******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/FIP1L1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:49472645-49472725 1.0000 80 chr19:13266827-13266907 1.0000 80 chr17:77808829-77808909 1.0000 80 chr6:31696630-31696710 1.0000 80 chr17:56161008-56161088 1.0000 80 chr9:139567825-139567905 1.0000 80 chr17:79479399-79479479 1.0000 80 chr6:20402559-20402639 1.0000 80 chr5:137806340-137806420 1.0000 80 chr3:184033078-184033158 1.0000 80 chr8:145734821-145734901 1.0000 80 chr19:51298281-51298361 1.0000 80 chr19:10224803-10224883 1.0000 80 chr11:65658463-65658543 1.0000 80 chr5:137802796-137802876 1.0000 80 chr9:139617653-139617733 1.0000 80 chr6:32940590-32940670 1.0000 80 chr12:6976916-6976996 1.0000 80 chr19:13266478-13266558 1.0000 80 chr19:12903207-12903287 1.0000 80 chr17:56405238-56405318 1.0000 80 chr6:26033199-26033279 1.0000 80 chr12:57633000-57633080 1.0000 80 chr11:64036968-64037048 1.0000 80 chr12:46766098-46766178 1.0000 80 chr16:88836868-88836948 1.0000 80 chr5:137806575-137806655 1.0000 80 chr7:128045787-128045867 1.0000 80 chr2:232573462-232573542 1.0000 80 chr11:118965237-11896531 1.0000 80 chr7:127032316-127032396 1.0000 80 chr1:212782498-212782578 1.0000 80 chr6:24720581-24720661 1.0000 80 chr17:62223734-62223814 1.0000 80 chr16:88877843-88877923 1.0000 80 chr12:6977121-6977201 1.0000 80 chr1:185285872-185285952 1.0000 80 chr18:29672881-29672961 1.0000 80 chr22:20114997-20115077 1.0000 80 chr17:79825001-79825081 1.0000 80 chrX:153191605-153191685 1.0000 80 chr5:137803085-137803165 1.0000 80 chr19:18391201-18391281 1.0000 80 chr4:100867978-100868058 1.0000 80 chr11:65625026-65625106 1.0000 80 chr19:813435-813515 1.0000 80 chrX:24043063-24043143 1.0000 80 chr17:74733026-74733106 1.0000 80 chr6:34202749-34202829 1.0000 80 chr17:79827387-79827467 1.0000 80 chr1:28586341-28586421 1.0000 80 chr1:149859301-149859381 1.0000 80 chr16:85588562-85588642 1.0000 80 chr1:62902824-62902904 1.0000 80 chr19:10531637-10531717 1.0000 80 chr3:156877557-156877637 1.0000 80 chr1:87170427-87170507 1.0000 80 chr7:100027473-100027553 1.0000 80 chr9:139564369-139564449 1.0000 80 chr4:6675795-6675875 1.0000 80 chr8:146012596-146012676 1.0000 80 chr6:74230240-74230320 1.0000 80 chr7:95951116-95951196 1.0000 80 chr11:119210730-11921081 1.0000 80 chr19:18544096-18544176 1.0000 80 chr1:145589295-145589375 1.0000 80 chr6:26156943-26157023 1.0000 80 chr1:11845298-11845378 1.0000 80 chr1:1710391-1710471 1.0000 80 chr7:100033419-100033499 1.0000 80 chr1:226298304-226298384 1.0000 80 chr9:139565212-139565292 1.0000 80 chr19:39897643-39897723 1.0000 80 chr19:5691970-5692050 1.0000 80 chr22:31885972-31886052 1.0000 80 chr1:22109272-22109352 1.0000 80 chr6:90062392-90062472 1.0000 80 chr12:46765229-46765309 1.0000 80 chr10:17271557-17271637 1.0000 80 chr15:41245778-41245858 1.0000 80 chr1:36184460-36184540 1.0000 80 chr5:10441948-10442028 1.0000 80 chr6:27835137-27835217 1.0000 80 chr19:1592253-1592333 1.0000 80 chr7:5596025-5596105 1.0000 80 chr21:36259244-36259324 1.0000 80 chr19:12904363-12904443 1.0000 80 chr20:48808428-48808508 1.0000 80 chr5:176918624-176918704 1.0000 80 chr3:169482517-169482597 1.0000 80 chr17:56408460-56408540 1.0000 80 chr12:125348123-12534820 1.0000 80 chr19:813086-813166 1.0000 80 chr19:19144330-19144410 1.0000 80 chr2:85838869-85838949 1.0000 80 chr11:64880120-64880200 1.0000 80 chr2:172949691-172949771 1.0000 80 chr17:80189539-80189619 1.0000 80 chrX:41193749-41193829 1.0000 80 chr6:17706747-17706827 1.0000 80 chr7:5567974-5568054 1.0000 80 chr17:40464510-40464590 1.0000 80 chr9:139014900-139014980 1.0000 80 chr10:15139303-15139383 1.0000 80 chr6:20402787-20402867 1.0000 80 chr16:9184177-9184257 1.0000 80 chr1:35657864-35657944 1.0000 80 chr16:31191891-31191971 1.0000 80 chr16:2009519-2009599 1.0000 80 chr2:232328897-232328977 1.0000 80 chr19:13265742-13265822 1.0000 80 chr3:47204912-47204992 1.0000 80 chr6:26123736-26123816 1.0000 80 chr19:13264350-13264430 1.0000 80 chr11:65658263-65658343 1.0000 80 chr2:3522747-3522827 1.0000 80 chr19:1040032-1040112 1.0000 80 chr5:179248276-179248356 1.0000 80 chr21:46495032-46495112 1.0000 80 chr4:56413108-56413188 1.0000 80 chr22:19949971-19950051 1.0000 80 chr19:47729887-47729967 1.0000 80 chr1:46050078-46050158 1.0000 80 chr2:220406498-220406578 1.0000 80 chr11:61348936-61349016 1.0000 80 chr2:95787600-95787680 1.0000 80 chr19:6531120-6531200 1.0000 80 chr7:39989885-39989965 1.0000 80 chr6:30710578-30710658 1.0000 80 chr17:73201665-73201745 1.0000 80 chr14:88237679-88237759 1.0000 80 chr1:45266240-45266320 1.0000 80 chr22:19950174-19950254 1.0000 80 chr7:148395601-148395681 1.0000 80 chr9:139736902-139736982 1.0000 80 chr12:53297329-53297409 1.0000 80 chr11:189753-189833 1.0000 80 chr11:65194810-65194890 1.0000 80 chr9:130661398-130661478 1.0000 80 chr1:205718620-205718700 1.0000 80 chr17:73852063-73852143 1.0000 80 chr6:27101653-27101733 1.0000 80 chrX:41193979-41194059 1.0000 80 chr19:33183278-33183358 1.0000 80 chr2:220083273-220083353 1.0000 80 chr7:75947616-75947696 1.0000 80 chr18:47013591-47013671 1.0000 80 chr3:49059465-49059545 1.0000 80 chr15:40803861-40803941 1.0000 80 chr2:131130182-131130262 1.0000 80 chr1:21113241-21113321 1.0000 80 chr19:14628890-14628970 1.0000 80 chr1:25573367-25573447 1.0000 80 chr1:165796923-165797003 1.0000 80 chr16:88700978-88701058 1.0000 80 chr1:937322-937402 1.0000 80 chr1:150551726-150551806 1.0000 80 chr1:162531670-162531750 1.0000 80 chr7:138145476-138145556 1.0000 80 chr16:85587161-85587241 1.0000 80 chr19:6199602-6199682 1.0000 80 chr2:159314445-159314525 1.0000 80 chr11:65195025-65195105 1.0000 80 chr12:7053633-7053713 1.0000 80 chr16:47071838-47071918 1.0000 80 chr12:7053361-7053441 1.0000 80 chr7:97501580-97501660 1.0000 80 chr8:145137712-145137792 1.0000 80 chr17:27052990-27053070 1.0000 80 chr17:34838942-34839022 1.0000 80 chr16:88878707-88878787 1.0000 80 chr16:69599797-69599877 1.0000 80 chr10:22610317-22610397 1.0000 80 chr6:30615033-30615113 1.0000 80 chr22:18121783-18121863 1.0000 80 chr19:17008536-17008616 1.0000 80 chr1:44440934-44441014 1.0000 80 chr14:68141411-68141491 1.0000 80 chr5:137801594-137801674 1.0000 80 chr6:108582194-108582274 1.0000 80 chr6:157802108-157802188 1.0000 80 chr3:183735325-183735405 1.0000 80 chr12:96793946-96794026 1.0000 80 chr5:95067019-95067099 1.0000 80 chr7:129074490-129074570 1.0000 80 chr19:10025408-10025488 1.0000 80 chr19:13953371-13953451 1.0000 80 chr11:46403872-46403952 1.0000 80 chr1:225615555-225615635 1.0000 80 chr19:38893733-38893813 1.0000 80 chr19:2783127-2783207 1.0000 80 chr11:34073074-34073154 1.0000 80 chr17:49338114-49338194 1.0000 80 chr11:9594766-9594846 1.0000 80 chr1:6673895-6673975 1.0000 80 chr11:9482927-9483007 1.0000 80 chr1:16939980-16940060 1.0000 80 chr19:17346501-17346581 1.0000 80 chr22:20286664-20286744 1.0000 80 chr22:17652429-17652509 1.0000 80 chr22:39097107-39097187 1.0000 80 chr7:33102299-33102379 1.0000 80 chr13:48612086-48612166 1.0000 80 chr3:47891379-47891459 1.0000 80 chr6:26197297-26197377 1.0000 80 chr22:39925329-39925409 1.0000 80 chr9:139617854-139617934 1.0000 80 chr8:124408432-124408512 1.0000 80 chr2:74374980-74375060 1.0000 80 chr19:13207574-13207654 1.0000 80 chr11:747594-747674 1.0000 80 chr4:83294790-83294870 1.0000 80 chr19:18392208-18392288 1.0000 80 chr16:12009565-12009645 1.0000 80 chr16:69364224-69364304 1.0000 80 chr5:118604461-118604541 1.0000 80 chr9:131591945-131592025 1.0000 80 chr14:75745655-75745735 1.0000 80 chr9:128003371-128003451 1.0000 80 chr17:8076349-8076429 1.0000 80 chr17:56405924-56406004 1.0000 80 chr7:75987925-75988005 1.0000 80 chr16:53088898-53088978 1.0000 80 chr20:62670103-62670183 1.0000 80 chr6:27834846-27834926 1.0000 80 chr17:80055716-80055796 1.0000 80 chr8:124169172-124169252 1.0000 80 chr5:134240451-134240531 1.0000 80 chr1:169454952-169455032 1.0000 80 chr1:150207464-150207544 1.0000 80 chr11:65547532-65547612 1.0000 80 chr6:27861511-27861591 1.0000 80 chr6:27101337-27101417 1.0000 80 chr16:3020141-3020221 1.0000 80 chr6:139694830-139694910 1.0000 80 chr7:56132013-56132093 1.0000 80 chr7:156432752-156432832 1.0000 80 chr7:75831165-75831245 1.0000 80 chr11:77531611-77531691 1.0000 80 chr19:12903416-12903496 1.0000 80 chr1:114301716-114301796 1.0000 80 chr6:26033488-26033568 1.0000 80 chr6:151187190-151187270 1.0000 80 chr10:30723219-30723299 1.0000 80 chr9:139562595-139562675 1.0000 80 chr16:3074006-3074086 1.0000 80 chr16:577225-577305 1.0000 80 chr11:6633145-6633225 1.0000 80 chr19:12904563-12904643 1.0000 80 chr6:30457566-30457646 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_FIP1L1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/FIP1L1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.145 C 0.355 G 0.362 T 0.138 Background letter frequencies (from file dataset with add-one prior applied): A 0.145 C 0.355 G 0.362 T 0.138 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGCWGCC MEME-1 width = 8 sites = 34 llr = 279 E-value = 2.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::4::1 pos.-specific C 9::a::a6 probability G ::a::9:: matrix T :a::61:3 bits 2.9 2.6 * 2.3 * 2.0 * Relative 1.7 * * Entropy 1.4 **** * (11.9 bits) 1.1 ******* 0.9 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CTGCTGCC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:27861511-27861591 30 1.54e-05 GGCCGTGCGC CTGCTGCT GCCCGGGGAG chr17:56405924-56406004 58 1.54e-05 CTGCTCTCTG CTGCTGCT CTTTCGCTTG chr19:33183278-33183358 3 1.54e-05 TG CTGCTGCT GCGGCCCAGG chr11:64880120-64880200 1 1.54e-05 . CTGCTGCT GTGGCTCGCC chr12:125348123-12534820 27 1.54e-05 CCTTAAGGAC CTGCTGCT TGATGAGCGA chr11:65658463-65658543 31 1.54e-05 TGCGCGACCT CTGCTGCT TCCTGGACTC chr7:56132013-56132093 13 5.50e-05 TGGGTTACCG CTGCTGCC CCTGCTGTCG chr6:108582194-108582274 1 5.50e-05 . ctgctgcc cgccgTGGGG chr7:138145476-138145556 25 5.50e-05 GGCGCCCAAG CTGCTGCC CTGCCTGCAC chr9:139736902-139736982 29 5.50e-05 AGGATCCGCG CTGCTGCC TGGAAGCTTC chr6:24720581-24720661 52 5.50e-05 ACCGCCCGCG CTGCTGCC GCCGCTCAGC chr9:139617653-139617733 28 5.50e-05 GTTGCGCCCA CTGCTGCC GCCTGCCCTG chr19:51298281-51298361 13 7.12e-05 CGTGTTCTCC CTGCAGCT CCAGTGGTGC chr10:30723219-30723299 11 1.13e-04 TCCCACAGGC CTGCAGCC AGCATCGCAC chr6:27834846-27834926 23 1.13e-04 TTTTTCGCCC CTGCAGCC TTCTTGGCCT chr3:49059465-49059545 24 1.13e-04 GCAGGGGGCG CTGCAGCC ACGCTGGGTC chr22:19950174-19950254 2 1.13e-04 C CTGCAGCC CATCCACAAC chr17:40464510-40464590 3 1.13e-04 GG CTGCAGCC AGTCCCTGCT chr5:176918624-176918704 38 1.13e-04 GGCCCTGTGC CTGCAGCC CCACCCCGGC chr15:41245778-41245858 17 1.13e-04 AAGCAGGAGT CTGCAGCC CCGAACACCC chrX:153191605-153191685 10 1.13e-04 ATACTCAGC CTGCAGCC CCCGCTCCCG chr6:20402787-20402867 10 1.35e-04 AGAGCCGGG CTGCTGCA GCAGCCACCA chr1:226298304-226298384 31 1.50e-04 GCAAGCCGAC CTGCTTCC GGAGCCACGC chr19:813435-813515 53 1.50e-04 CCAGGCTCTT CTGCTTCC ACTCGCTGAT chr9:139617854-139617934 22 1.80e-04 GATGGCCGAC CTGCAGCA GGTGGCACCC chr1:35657864-35657944 22 1.80e-04 gccccTGGTG ATGCTGCT GGTGGTAGGG chr19:813086-813166 27 1.80e-04 TGGCGATGAC CTGCAGCA GCCGCGGAGG chr9:131591945-131592025 42 2.12e-04 CGCCTCCACC ATGCTGCC CTGCACGGGG chr2:220083273-220083353 63 2.12e-04 TCAGGCCATC CTGCATCC AGGCCGGACC chr16:31191891-31191971 17 2.12e-04 TGTCGCAGTG CTGCATCC GGGCACTCGC chr2:74374980-74375060 12 2.35e-04 GCCGGGCTCC ATGCAGCC ATGCCCGGCC chr17:80189539-80189619 10 2.35e-04 CGGCGGCAC ATGCAGCC TTCCTTTCCC chr2:85838869-85838949 13 2.41e-04 CCTTGGCCGC CTGCTTCA CCTTCTTGTC chr1:44440934-44441014 19 3.00e-04 CCCGGATTTC CAGCTGCT TGAGGAGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27861511-27861591 1.5e-05 29_[+1]_43 chr17:56405924-56406004 1.5e-05 57_[+1]_15 chr19:33183278-33183358 1.5e-05 2_[+1]_70 chr11:64880120-64880200 1.5e-05 [+1]_72 chr12:125348123-12534820 1.5e-05 26_[+1]_46 chr11:65658463-65658543 1.5e-05 30_[+1]_42 chr7:56132013-56132093 5.5e-05 12_[+1]_60 chr6:108582194-108582274 5.5e-05 [+1]_72 chr7:138145476-138145556 5.5e-05 24_[+1]_48 chr9:139736902-139736982 5.5e-05 28_[+1]_44 chr6:24720581-24720661 5.5e-05 51_[+1]_21 chr9:139617653-139617733 5.5e-05 27_[+1]_45 chr19:51298281-51298361 7.1e-05 12_[+1]_60 chr10:30723219-30723299 0.00011 10_[+1]_62 chr6:27834846-27834926 0.00011 22_[+1]_50 chr3:49059465-49059545 0.00011 23_[+1]_49 chr22:19950174-19950254 0.00011 1_[+1]_71 chr17:40464510-40464590 0.00011 2_[+1]_70 chr5:176918624-176918704 0.00011 37_[+1]_35 chr15:41245778-41245858 0.00011 16_[+1]_56 chrX:153191605-153191685 0.00011 9_[+1]_63 chr6:20402787-20402867 0.00013 9_[+1]_63 chr1:226298304-226298384 0.00015 30_[+1]_42 chr19:813435-813515 0.00015 52_[+1]_20 chr9:139617854-139617934 0.00018 21_[+1]_51 chr1:35657864-35657944 0.00018 21_[+1]_51 chr19:813086-813166 0.00018 26_[+1]_46 chr9:131591945-131592025 0.00021 41_[+1]_31 chr2:220083273-220083353 0.00021 62_[+1]_10 chr16:31191891-31191971 0.00021 16_[+1]_56 chr2:74374980-74375060 0.00024 11_[+1]_61 chr17:80189539-80189619 0.00024 9_[+1]_63 chr2:85838869-85838949 0.00024 12_[+1]_60 chr1:44440934-44441014 0.0003 18_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCWGCC width=8 seqs=34 chr6:27861511-27861591 ( 30) CTGCTGCT 1 chr17:56405924-56406004 ( 58) CTGCTGCT 1 chr19:33183278-33183358 ( 3) CTGCTGCT 1 chr11:64880120-64880200 ( 1) CTGCTGCT 1 chr12:125348123-12534820 ( 27) CTGCTGCT 1 chr11:65658463-65658543 ( 31) CTGCTGCT 1 chr7:56132013-56132093 ( 13) CTGCTGCC 1 chr6:108582194-108582274 ( 1) CTGCTGCC 1 chr7:138145476-138145556 ( 25) CTGCTGCC 1 chr9:139736902-139736982 ( 29) CTGCTGCC 1 chr6:24720581-24720661 ( 52) CTGCTGCC 1 chr9:139617653-139617733 ( 28) CTGCTGCC 1 chr19:51298281-51298361 ( 13) CTGCAGCT 1 chr10:30723219-30723299 ( 11) CTGCAGCC 1 chr6:27834846-27834926 ( 23) CTGCAGCC 1 chr3:49059465-49059545 ( 24) CTGCAGCC 1 chr22:19950174-19950254 ( 2) CTGCAGCC 1 chr17:40464510-40464590 ( 3) CTGCAGCC 1 chr5:176918624-176918704 ( 38) CTGCAGCC 1 chr15:41245778-41245858 ( 17) CTGCAGCC 1 chrX:153191605-153191685 ( 10) CTGCAGCC 1 chr6:20402787-20402867 ( 10) CTGCTGCA 1 chr1:226298304-226298384 ( 31) CTGCTTCC 1 chr19:813435-813515 ( 53) CTGCTTCC 1 chr9:139617854-139617934 ( 22) CTGCAGCA 1 chr1:35657864-35657944 ( 22) ATGCTGCT 1 chr19:813086-813166 ( 27) CTGCAGCA 1 chr9:131591945-131592025 ( 42) ATGCTGCC 1 chr2:220083273-220083353 ( 63) CTGCATCC 1 chr16:31191891-31191971 ( 17) CTGCATCC 1 chr2:74374980-74375060 ( 12) ATGCAGCC 1 chr17:80189539-80189619 ( 10) ATGCAGCC 1 chr2:85838869-85838949 ( 13) CTGCTTCA 1 chr1:44440934-44441014 ( 19) CAGCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.86128 E= 2.3e+001 -30 131 -1173 -1173 -230 -1173 -1173 282 -1173 -1173 147 -1173 -1173 149 -1173 -1173 161 -1173 -1173 202 -1173 -1173 124 9 -1173 149 -1173 -1173 -30 80 -1173 94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.3e+001 0.117647 0.882353 0.000000 0.000000 0.029412 0.000000 0.000000 0.970588 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.441176 0.000000 0.000000 0.558824 0.000000 0.000000 0.852941 0.147059 0.000000 1.000000 0.000000 0.000000 0.117647 0.617647 0.000000 0.264706 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCC MEME-1 regular expression -------------------------------------------------------------------------------- CTGC[TA]GC[CT] -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF ATSTWTWT MEME-2 width = 8 sites = 3 llr = 39 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::3:7: pos.-specific C ::7::::: probability G ::3::::: matrix T :a:a7a3a bits 2.9 ** * * * 2.6 ** * * * 2.3 ** * * * 2.0 ** ***** Relative 1.7 ** ***** Entropy 1.4 ** ***** (18.6 bits) 1.1 ** ***** 0.9 ** ***** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ATCTTTAT consensus G A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:26033199-26033279 70 3.74e-07 CCTCAAAAAC ATCTTTAT GGG chr6:27101337-27101417 58 7.29e-07 TAAATTACCC ATCTTTTT GAAAACAGTG chr17:8076349-8076429 6 2.64e-06 tatcc atgtatat acatCTgcgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26033199-26033279 3.7e-07 69_[+2]_3 chr6:27101337-27101417 7.3e-07 57_[+2]_15 chr17:8076349-8076429 2.6e-06 5_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATSTWTWT width=8 seqs=3 chr6:26033199-26033279 ( 70) ATCTTTAT 1 chr6:27101337-27101417 ( 58) ATCTTTTT 1 chr17:8076349-8076429 ( 6) ATGTATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 1.5e+003 278 -823 -823 -823 -823 -823 -823 285 -823 91 -12 -823 -823 -823 -823 285 120 -823 -823 227 -823 -823 -823 285 220 -823 -823 127 -823 -823 -823 285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSTWTWT MEME-2 regular expression -------------------------------------------------------------------------------- AT[CG]T[TA]T[AT]T -------------------------------------------------------------------------------- Time 8.67 secs. ******************************************************************************** ******************************************************************************** MOTIF WCTWATTT MEME-3 width = 8 sites = 3 llr = 40 E-value = 6.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::7a::: pos.-specific C :7:::::: probability G :::::::: matrix T 73a3:aaa bits 2.9 * **** 2.6 * **** 2.3 * **** 2.0 * ****** Relative 1.7 * ****** Entropy 1.4 * ****** (19.1 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TCTAATTT consensus AT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:10025408-10025488 57 1.45e-07 CCGGGCTAGT TTTAATTT CCTCTGTTTT chr6:26033199-26033279 4 5.19e-07 GGA TCTAATTT CTGCAGGACA chr19:6199602-6199682 28 2.08e-06 cctgcgcgcc acttattt cacctcctgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:10025408-10025488 1.5e-07 56_[+3]_16 chr6:26033199-26033279 5.2e-07 3_[+3]_69 chr19:6199602-6199682 2.1e-06 27_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WCTWATTT width=8 seqs=3 chr19:10025408-10025488 ( 57) TTTAATTT 1 chr6:26033199-26033279 ( 4) TCTAATTT 1 chr19:6199602-6199682 ( 28) ACTTATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 6.0e+002 120 -823 -823 227 -823 91 -823 127 -823 -823 -823 285 220 -823 -823 127 278 -823 -823 -823 -823 -823 -823 285 -823 -823 -823 285 -823 -823 -823 285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 6.0e+002 0.333333 0.000000 0.000000 0.666667 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTWATTT MEME-3 regular expression -------------------------------------------------------------------------------- [TA][CT]T[AT]ATTT -------------------------------------------------------------------------------- Time 12.26 secs. ******************************************************************************** ******************************************************************************** MOTIF WAAAAWCA MEME-4 width = 8 sites = 3 llr = 40 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3aaaa7:a pos.-specific C ::::::a: probability G :::::::: matrix T 7::::3:: bits 2.9 **** * 2.6 **** * 2.3 **** * 2.0 ****** * Relative 1.7 ****** * Entropy 1.4 ******** (19.2 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TAAAAACA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:26033199-26033279 52 4.55e-07 TCAAAGCCAT TAAAAACA CCTCAAAAAC chr7:33102299-33102379 50 1.37e-06 CCAAGCAGGA AAAAAACA GGCAGCTCGC chr5:137806340-137806420 53 1.37e-06 TTCTGACCCC TAAAATCA GAGGAACAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26033199-26033279 4.6e-07 51_[+4]_21 chr7:33102299-33102379 1.4e-06 49_[+4]_23 chr5:137806340-137806420 1.4e-06 52_[+4]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAAAAWCA width=8 seqs=3 chr6:26033199-26033279 ( 52) TAAAAACA 1 chr7:33102299-33102379 ( 50) AAAAAACA 1 chr5:137806340-137806420 ( 53) TAAAATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 2.7e+003 120 -823 -823 227 278 -823 -823 -823 278 -823 -823 -823 278 -823 -823 -823 278 -823 -823 -823 220 -823 -823 127 -823 149 -823 -823 278 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.7e+003 0.333333 0.000000 0.000000 0.666667 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAAAWCA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]AAAA[AT]CA -------------------------------------------------------------------------------- Time 16.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AYAAATTA MEME-5 width = 8 sites = 2 llr = 29 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:aaa::a pos.-specific C :5:::::: probability G :::::::: matrix T :5:::aa: bits 2.9 * ****** 2.6 * ****** 2.3 * ****** 2.0 * ****** Relative 1.7 * ****** Entropy 1.4 * ****** (20.8 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ACAAATTA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:27101337-27101417 47 1.68e-07 GACTCTAGTC ATAAATTA CCCATCTTTT chr6:26033199-26033279 19 6.02e-07 TTTCTGCAGG ACAAATTA CTAAAAGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27101337-27101417 1.7e-07 46_[+5]_26 chr6:26033199-26033279 6e-07 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYAAATTA width=8 seqs=2 chr6:27101337-27101417 ( 47) ATAAATTA 1 chr6:26033199-26033279 ( 19) ACAAATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.7e+003 278 -765 -765 -765 -765 49 -765 185 278 -765 -765 -765 278 -765 -765 -765 278 -765 -765 -765 -765 -765 -765 285 -765 -765 -765 285 278 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.7e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYAAATTA MEME-5 regular expression -------------------------------------------------------------------------------- A[CT]AAATTA -------------------------------------------------------------------------------- Time 19.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49472645-49472725 6.88e-01 80 chr19:13266827-13266907 2.89e-01 80 chr17:77808829-77808909 9.91e-01 80 chr6:31696630-31696710 8.17e-01 80 chr17:56161008-56161088 1.00e+00 80 chr9:139567825-139567905 3.73e-01 80 chr17:79479399-79479479 5.57e-01 80 chr6:20402559-20402639 4.43e-01 80 chr5:137806340-137806420 2.74e-05 52_[+4(1.37e-06)]_20 chr3:184033078-184033158 9.72e-01 80 chr8:145734821-145734901 8.39e-01 80 chr19:51298281-51298361 1.20e-01 12_[+1(7.12e-05)]_60 chr19:10224803-10224883 7.16e-02 80 chr11:65658463-65658543 9.85e-02 30_[+1(1.54e-05)]_42 chr5:137802796-137802876 3.25e-01 80 chr9:139617653-139617733 3.19e-01 27_[+1(5.50e-05)]_45 chr6:32940590-32940670 9.37e-01 80 chr12:6976916-6976996 9.23e-01 80 chr19:13266478-13266558 7.97e-01 80 chr19:12903207-12903287 4.59e-01 80 chr17:56405238-56405318 4.08e-01 80 chr6:26033199-26033279 4.23e-14 3_[+3(5.19e-07)]_7_[+5(6.02e-07)]_\ 25_[+4(4.55e-07)]_10_[+2(3.74e-07)]_3 chr12:57633000-57633080 9.99e-01 80 chr11:64036968-64037048 1.05e-01 80 chr12:46766098-46766178 9.98e-01 80 chr16:88836868-88836948 6.78e-01 80 chr5:137806575-137806655 6.63e-01 80 chr7:128045787-128045867 1.28e-01 80 chr2:232573462-232573542 4.20e-01 80 chr11:118965237-11896531 7.94e-01 80 chr7:127032316-127032396 9.96e-01 80 chr1:212782498-212782578 4.54e-01 80 chr6:24720581-24720661 3.38e-01 51_[+1(5.50e-05)]_21 chr17:62223734-62223814 3.48e-02 80 chr16:88877843-88877923 7.19e-01 80 chr12:6977121-6977201 9.99e-01 80 chr1:185285872-185285952 9.88e-01 80 chr18:29672881-29672961 7.77e-01 80 chr22:20114997-20115077 3.07e-02 41_[+2(6.59e-05)]_31 chr17:79825001-79825081 7.31e-01 80 chrX:153191605-153191685 3.59e-01 80 chr5:137803085-137803165 6.62e-01 80 chr19:18391201-18391281 4.63e-01 80 chr4:100867978-100868058 9.81e-01 80 chr11:65625026-65625106 5.58e-01 80 chr19:813435-813515 1.35e-01 80 chrX:24043063-24043143 7.59e-01 80 chr17:74733026-74733106 8.47e-01 80 chr6:34202749-34202829 9.72e-01 80 chr17:79827387-79827467 9.82e-01 80 chr1:28586341-28586421 7.11e-01 80 chr1:149859301-149859381 8.36e-01 80 chr16:85588562-85588642 3.02e-01 80 chr1:62902824-62902904 8.87e-02 80 chr19:10531637-10531717 9.53e-01 80 chr3:156877557-156877637 7.51e-01 80 chr1:87170427-87170507 3.25e-01 80 chr7:100027473-100027553 8.25e-01 80 chr9:139564369-139564449 6.25e-01 80 chr4:6675795-6675875 1.96e-01 80 chr8:146012596-146012676 9.14e-01 80 chr6:74230240-74230320 5.44e-01 80 chr7:95951116-95951196 1.65e-01 80 chr11:119210730-11921081 9.98e-01 80 chr19:18544096-18544176 9.17e-01 80 chr1:145589295-145589375 1.66e-01 80 chr6:26156943-26157023 2.15e-01 80 chr1:11845298-11845378 4.16e-01 80 chr1:1710391-1710471 6.87e-02 80 chr7:100033419-100033499 9.99e-01 80 chr1:226298304-226298384 2.26e-01 80 chr9:139565212-139565292 3.32e-01 80 chr19:39897643-39897723 7.52e-01 80 chr19:5691970-5692050 3.89e-01 80 chr22:31885972-31886052 1.00e+00 80 chr1:22109272-22109352 7.62e-01 80 chr6:90062392-90062472 8.04e-01 80 chr12:46765229-46765309 6.21e-02 80 chr10:17271557-17271637 8.30e-01 80 chr15:41245778-41245858 3.96e-02 80 chr1:36184460-36184540 8.11e-01 80 chr5:10441948-10442028 9.93e-01 80 chr6:27835137-27835217 4.90e-02 80 chr19:1592253-1592333 5.11e-01 80 chr7:5596025-5596105 1.09e-02 80 chr21:36259244-36259324 8.86e-01 80 chr19:12904363-12904443 9.99e-01 80 chr20:48808428-48808508 5.72e-01 80 chr5:176918624-176918704 4.42e-01 80 chr3:169482517-169482597 9.76e-01 80 chr17:56408460-56408540 8.17e-01 80 chr12:125348123-12534820 1.36e-02 26_[+1(1.54e-05)]_46 chr19:813086-813166 2.53e-01 80 chr19:19144330-19144410 6.58e-01 80 chr2:85838869-85838949 8.23e-02 80 chr11:64880120-64880200 5.97e-02 [+1(1.54e-05)]_72 chr2:172949691-172949771 4.36e-01 80 chr17:80189539-80189619 1.33e-01 80 chrX:41193749-41193829 3.58e-01 80 chr6:17706747-17706827 8.13e-01 80 chr7:5567974-5568054 4.29e-02 80 chr17:40464510-40464590 3.98e-01 80 chr9:139014900-139014980 6.31e-01 80 chr10:15139303-15139383 7.16e-01 80 chr6:20402787-20402867 1.87e-01 80 chr16:9184177-9184257 4.61e-01 80 chr1:35657864-35657944 4.03e-01 80 chr16:31191891-31191971 2.93e-01 80 chr16:2009519-2009599 8.06e-01 80 chr2:232328897-232328977 3.24e-01 80 chr19:13265742-13265822 8.06e-01 80 chr3:47204912-47204992 8.23e-01 80 chr6:26123736-26123816 1.57e-02 11_[+2(5.22e-05)]_61 chr19:13264350-13264430 2.86e-01 80 chr11:65658263-65658343 7.97e-01 80 chr2:3522747-3522827 9.48e-01 80 chr19:1040032-1040112 4.10e-01 80 chr5:179248276-179248356 9.94e-01 80 chr21:46495032-46495112 9.34e-01 80 chr4:56413108-56413188 6.30e-01 80 chr22:19949971-19950051 3.88e-01 80 chr19:47729887-47729967 9.50e-01 80 chr1:46050078-46050158 6.69e-01 80 chr2:220406498-220406578 5.81e-01 80 chr11:61348936-61349016 8.50e-01 80 chr2:95787600-95787680 7.04e-01 80 chr19:6531120-6531200 4.62e-02 29_[+1(1.54e-05)]_1_[+1(1.54e-05)]_\ 34 chr7:39989885-39989965 9.99e-01 80 chr6:30710578-30710658 6.30e-01 80 chr17:73201665-73201745 7.53e-01 80 chr14:88237679-88237759 1.91e-02 80 chr1:45266240-45266320 8.79e-01 80 chr22:19950174-19950254 6.63e-02 80 chr7:148395601-148395681 2.72e-01 80 chr9:139736902-139736982 1.78e-01 28_[+1(5.50e-05)]_44 chr12:53297329-53297409 8.80e-01 80 chr11:189753-189833 1.02e-01 80 chr11:65194810-65194890 1.90e-01 80 chr9:130661398-130661478 9.87e-01 80 chr1:205718620-205718700 9.98e-01 80 chr17:73852063-73852143 9.85e-01 80 chr6:27101653-27101733 4.49e-01 80 chrX:41193979-41194059 6.27e-01 80 chr19:33183278-33183358 9.99e-02 2_[+1(1.54e-05)]_70 chr2:220083273-220083353 8.97e-02 80 chr7:75947616-75947696 4.03e-01 80 chr18:47013591-47013671 7.09e-01 80 chr3:49059465-49059545 3.44e-01 80 chr15:40803861-40803941 9.81e-01 80 chr2:131130182-131130262 7.76e-01 80 chr1:21113241-21113321 1.00e+00 80 chr19:14628890-14628970 1.01e-01 80 chr1:25573367-25573447 2.24e-01 80 chr1:165796923-165797003 9.90e-01 80 chr16:88700978-88701058 5.34e-01 80 chr1:937322-937402 1.00e+00 80 chr1:150551726-150551806 1.00e+00 80 chr1:162531670-162531750 8.82e-01 80 chr7:138145476-138145556 7.99e-03 24_[+1(5.50e-05)]_48 chr16:85587161-85587241 9.42e-01 80 chr19:6199602-6199682 6.66e-04 27_[+3(2.08e-06)]_45 chr2:159314445-159314525 5.28e-01 80 chr11:65195025-65195105 3.43e-01 80 chr12:7053633-7053713 9.23e-01 80 chr16:47071838-47071918 9.58e-01 80 chr12:7053361-7053441 2.93e-01 80 chr7:97501580-97501660 8.68e-01 80 chr8:145137712-145137792 1.00e+00 80 chr17:27052990-27053070 9.96e-01 80 chr17:34838942-34839022 9.92e-01 80 chr16:88878707-88878787 6.53e-01 80 chr16:69599797-69599877 5.77e-01 80 chr10:22610317-22610397 1.00e+00 80 chr6:30615033-30615113 9.99e-01 80 chr22:18121783-18121863 6.65e-01 80 chr19:17008536-17008616 7.59e-01 80 chr1:44440934-44441014 9.65e-02 80 chr14:68141411-68141491 9.84e-01 80 chr5:137801594-137801674 3.75e-01 80 chr6:108582194-108582274 1.30e-01 [+1(5.50e-05)]_72 chr6:157802108-157802188 1.00e+00 80 chr3:183735325-183735405 9.13e-01 80 chr12:96793946-96794026 9.82e-01 80 chr5:95067019-95067099 6.10e-01 80 chr7:129074490-129074570 9.70e-01 80 chr19:10025408-10025488 2.59e-05 56_[+3(1.45e-07)]_16 chr19:13953371-13953451 9.99e-01 80 chr11:46403872-46403952 3.53e-01 80 chr1:225615555-225615635 8.63e-01 80 chr19:38893733-38893813 2.24e-01 80 chr19:2783127-2783207 5.48e-01 80 chr11:34073074-34073154 4.95e-01 80 chr17:49338114-49338194 9.14e-01 80 chr11:9594766-9594846 9.80e-01 80 chr1:6673895-6673975 4.89e-01 80 chr11:9482927-9483007 8.78e-01 80 chr1:16939980-16940060 9.84e-01 80 chr19:17346501-17346581 7.89e-01 80 chr22:20286664-20286744 1.00e+00 80 chr22:17652429-17652509 1.00e+00 80 chr22:39097107-39097187 9.93e-01 80 chr7:33102299-33102379 2.83e-03 49_[+4(1.37e-06)]_23 chr13:48612086-48612166 2.15e-01 80 chr3:47891379-47891459 6.40e-01 80 chr6:26197297-26197377 5.94e-01 80 chr22:39925329-39925409 5.63e-01 80 chr9:139617854-139617934 9.30e-02 80 chr8:124408432-124408512 6.40e-01 80 chr2:74374980-74375060 1.57e-01 80 chr19:13207574-13207654 7.38e-01 80 chr11:747594-747674 8.83e-01 80 chr4:83294790-83294870 2.08e-01 80 chr19:18392208-18392288 5.96e-01 80 chr16:12009565-12009645 6.03e-01 80 chr16:69364224-69364304 9.99e-01 80 chr5:118604461-118604541 7.10e-01 80 chr9:131591945-131592025 1.74e-01 80 chr14:75745655-75745735 2.68e-01 80 chr9:128003371-128003451 2.72e-02 80 chr17:8076349-8076429 4.97e-06 5_[+2(2.64e-06)]_53_[+4(7.65e-05)]_\ 6 chr17:56405924-56406004 1.23e-03 54_[+1(1.54e-05)]_18 chr7:75987925-75988005 1.00e+00 80 chr16:53088898-53088978 9.71e-01 80 chr20:62670103-62670183 8.92e-01 80 chr6:27834846-27834926 9.77e-03 80 chr17:80055716-80055796 9.42e-01 80 chr8:124169172-124169252 9.97e-01 80 chr5:134240451-134240531 4.79e-01 80 chr1:169454952-169455032 8.59e-01 80 chr1:150207464-150207544 6.27e-01 80 chr11:65547532-65547612 5.53e-01 80 chr6:27861511-27861591 1.17e-01 29_[+1(1.54e-05)]_43 chr6:27101337-27101417 2.72e-10 [+3(6.73e-05)]_38_[+5(1.68e-07)]_3_\ [+2(7.29e-07)]_15 chr16:3020141-3020221 6.70e-01 80 chr6:139694830-139694910 9.51e-02 80 chr7:56132013-56132093 4.28e-02 12_[+1(5.50e-05)]_60 chr7:156432752-156432832 2.21e-01 80 chr7:75831165-75831245 7.16e-01 80 chr11:77531611-77531691 2.53e-01 80 chr19:12903416-12903496 6.61e-01 80 chr1:114301716-114301796 7.67e-01 80 chr6:26033488-26033568 1.68e-02 80 chr6:151187190-151187270 9.92e-01 80 chr10:30723219-30723299 4.21e-01 80 chr9:139562595-139562675 3.39e-01 80 chr16:3074006-3074086 8.96e-01 80 chr16:577225-577305 9.73e-01 80 chr11:6633145-6633225 9.71e-01 80 chr19:12904563-12904643 9.00e-01 80 chr6:30457566-30457646 1.11e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************