******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/EWSR1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr20:52280857-52280937 1.0000 80 chr20:52339703-52339783 1.0000 80 chr20:52211730-52211810 1.0000 80 chr20:52482713-52482793 1.0000 80 chr17:56075785-56075865 1.0000 80 chr17:59722491-59722571 1.0000 80 chr20:52468728-52468808 1.0000 80 chr20:49382377-49382457 1.0000 80 chr17:59748175-59748255 1.0000 80 chr17:59436134-59436214 1.0000 80 chr20:52483447-52483527 1.0000 80 chr20:55734676-55734756 1.0000 80 chr20:52462672-52462752 1.0000 80 chr17:59434164-59434244 1.0000 80 chr20:46018822-46018902 1.0000 80 chr5:81571141-81571221 1.0000 80 chr20:52360304-52360384 1.0000 80 chr17:59806001-59806081 1.0000 80 chr5:10265533-10265613 1.0000 80 chr20:52216536-52216616 1.0000 80 chr17:59856061-59856141 1.0000 80 chr20:45948251-45948331 1.0000 80 chr17:57936991-57937071 1.0000 80 chr17:59491758-59491838 1.0000 80 chr17:59509301-59509381 1.0000 80 chr20:52299604-52299684 1.0000 80 chr20:52423280-52423360 1.0000 80 chr20:52340294-52340374 1.0000 80 chr20:49412435-49412515 1.0000 80 chr20:52438599-52438679 1.0000 80 chr17:59955351-59955431 1.0000 80 chr20:52284730-52284810 1.0000 80 chr8:146013359-146013439 1.0000 80 chr17:59313340-59313420 1.0000 80 chr20:52308168-52308248 1.0000 80 chr20:52364879-52364959 1.0000 80 chr17:59709904-59709984 1.0000 80 chr20:52293179-52293259 1.0000 80 chr17:59911198-59911278 1.0000 80 chr20:52566796-52566876 1.0000 80 chr20:52184052-52184132 1.0000 80 chr20:49358508-49358588 1.0000 80 chr20:52434120-52434200 1.0000 80 chr20:52441486-52441566 1.0000 80 chr20:52501749-52501829 1.0000 80 chr20:52273413-52273493 1.0000 80 chr17:59800761-59800841 1.0000 80 chr20:52229214-52229294 1.0000 80 chr20:55842295-55842375 1.0000 80 chr20:52420492-52420572 1.0000 80 chr20:46137118-46137198 1.0000 80 chr20:52345048-52345128 1.0000 80 chr20:52396608-52396688 1.0000 80 chr17:59488819-59488899 1.0000 80 chr11:34124756-34124836 1.0000 80 chr17:58392877-58392957 1.0000 80 chr6:16150436-16150516 1.0000 80 chr20:46064404-46064484 1.0000 80 chr17:57969531-57969611 1.0000 80 chr17:59358857-59358937 1.0000 80 chr20:52442023-52442103 1.0000 80 chr11:5265184-5265264 1.0000 80 chr20:52278343-52278423 1.0000 80 chr17:59398837-59398917 1.0000 80 chr2:55464275-55464355 1.0000 80 chr17:59397050-59397130 1.0000 80 chr17:57973975-57974055 1.0000 80 chr20:52456059-52456139 1.0000 80 chr17:58811938-58812018 1.0000 80 chr17:59941431-59941511 1.0000 80 chr20:55782563-55782643 1.0000 80 chr17:57067129-57067209 1.0000 80 chr1:8929234-8929314 1.0000 80 chr20:49380699-49380779 1.0000 80 chr20:52536677-52536757 1.0000 80 chr3:9427812-9427892 1.0000 80 chr2:150421677-150421757 1.0000 80 chr20:55763977-55764057 1.0000 80 chr20:52271222-52271302 1.0000 80 chr17:58155663-58155743 1.0000 80 chr20:52200811-52200891 1.0000 80 chr17:57919070-57919150 1.0000 80 chr1:245016139-245016219 1.0000 80 chr20:45872049-45872129 1.0000 80 chr20:45976553-45976633 1.0000 80 chr5:177578497-177578577 1.0000 80 chr17:60188430-60188510 1.0000 80 chr20:55693568-55693648 1.0000 80 chr20:49350590-49350670 1.0000 80 chr7:129244671-129244751 1.0000 80 chr20:52231430-52231510 1.0000 80 chr17:58754314-58754394 1.0000 80 chr20:52469290-52469370 1.0000 80 chr17:58686671-58686751 1.0000 80 chr17:59514495-59514575 1.0000 80 chr2:101624175-101624255 1.0000 80 chr20:52836409-52836489 1.0000 80 chr20:52261378-52261458 1.0000 80 chr20:52311388-52311468 1.0000 80 chr20:52305602-52305682 1.0000 80 chr17:57984062-57984142 1.0000 80 chr17:58373807-58373887 1.0000 80 chr17:59962377-59962457 1.0000 80 chr20:52575537-52575617 1.0000 80 chr17:59939849-59939929 1.0000 80 chr20:52581734-52581814 1.0000 80 chr20:55826055-55826135 1.0000 80 chr17:59345377-59345457 1.0000 80 chr17:59615970-59616050 1.0000 80 chr17:58847436-58847516 1.0000 80 chr17:59787108-59787188 1.0000 80 chr17:59519674-59519754 1.0000 80 chr17:59638904-59638984 1.0000 80 chr20:52368707-52368787 1.0000 80 chr17:58770405-58770485 1.0000 80 chr17:58212205-58212285 1.0000 80 chr17:58699734-58699814 1.0000 80 chr20:52740312-52740392 1.0000 80 chr20:52618892-52618972 1.0000 80 chr20:52410552-52410632 1.0000 80 chrX:48437286-48437366 1.0000 80 chr20:52213806-52213886 1.0000 80 chr17:59956657-59956737 1.0000 80 chr17:59663694-59663774 1.0000 80 chr17:58563096-58563176 1.0000 80 chr12:57056120-57056200 1.0000 80 chr20:52457229-52457309 1.0000 80 chr20:54152215-54152295 1.0000 80 chr17:58448949-58449029 1.0000 80 chr17:59577791-59577871 1.0000 80 chr20:52360875-52360955 1.0000 80 chr17:59894948-59895028 1.0000 80 chr20:52394645-52394725 1.0000 80 chr20:52351617-52351697 1.0000 80 chr20:52392428-52392508 1.0000 80 chr17:59824070-59824150 1.0000 80 chr17:58717886-58717966 1.0000 80 chr20:52341657-52341737 1.0000 80 chr17:59315839-59315919 1.0000 80 chr17:58240921-58241001 1.0000 80 chr20:53263696-53263776 1.0000 80 chr20:49309682-49309762 1.0000 80 chr17:59624634-59624714 1.0000 80 chr20:52300804-52300884 1.0000 80 chr17:59872404-59872484 1.0000 80 chr20:46134099-46134179 1.0000 80 chr20:52380161-52380241 1.0000 80 chr20:52497969-52498049 1.0000 80 chr17:59896967-59897047 1.0000 80 chr17:59598433-59598513 1.0000 80 chr17:57168130-57168210 1.0000 80 chr7:30102417-30102497 1.0000 80 chr20:45870807-45870887 1.0000 80 chr20:55843718-55843798 1.0000 80 chr20:52250874-52250954 1.0000 80 chr20:52318994-52319074 1.0000 80 chr17:59476078-59476158 1.0000 80 chr5:10266338-10266418 1.0000 80 chr17:58031491-58031571 1.0000 80 chr17:58303578-58303658 1.0000 80 chr20:52504384-52504464 1.0000 80 chr3:39451912-39451992 1.0000 80 chr20:52390752-52390832 1.0000 80 chr20:52714734-52714814 1.0000 80 chr20:52265557-52265637 1.0000 80 chr17:59775793-59775873 1.0000 80 chr17:59816550-59816630 1.0000 80 chr17:59652266-59652346 1.0000 80 chr17:59794964-59795044 1.0000 80 chr17:59964508-59964588 1.0000 80 chr17:59731118-59731198 1.0000 80 chr20:52383252-52383332 1.0000 80 chr20:46189249-46189329 1.0000 80 chr20:52271927-52272007 1.0000 80 chr20:52530062-52530142 1.0000 80 chr20:49403926-49404006 1.0000 80 chr20:52376818-52376898 1.0000 80 chr17:59483752-59483832 1.0000 80 chr17:59773326-59773406 1.0000 80 chr17:59815750-59815830 1.0000 80 chr20:46159668-46159748 1.0000 80 chr1:113453620-113453700 1.0000 80 chr17:59761672-59761752 1.0000 80 chr7:120597590-120597670 1.0000 80 chr17:57125670-57125750 1.0000 80 chr1:153633606-153633686 1.0000 80 chr12:53847282-53847362 1.0000 80 chr20:52266171-52266251 1.0000 80 chr17:59876771-59876851 1.0000 80 chr17:59697464-59697544 1.0000 80 chr20:45998401-45998481 1.0000 80 chr17:58040256-58040336 1.0000 80 chr20:52508316-52508396 1.0000 80 chr20:52205282-52205362 1.0000 80 chr1:46781521-46781601 1.0000 80 chr17:58032329-58032409 1.0000 80 chr20:52217747-52217827 1.0000 80 chr20:52391761-52391841 1.0000 80 chr20:55847216-55847296 1.0000 80 chr17:57188522-57188602 1.0000 80 chr2:183649716-183649796 1.0000 80 chr20:55829359-55829439 1.0000 80 chr20:47900932-47901012 1.0000 80 chr20:52382553-52382633 1.0000 80 chr7:102719890-102719970 1.0000 80 chr17:58368320-58368400 1.0000 80 chr20:52276246-52276326 1.0000 80 chr20:45862326-45862406 1.0000 80 chr20:55794263-55794343 1.0000 80 chr17:57932241-57932321 1.0000 80 chr20:52302615-52302695 1.0000 80 chr3:195775174-195775254 1.0000 80 chr20:46067603-46067683 1.0000 80 chr7:111123251-111123331 1.0000 80 chr20:46166603-46166683 1.0000 80 chr20:52447879-52447959 1.0000 80 chr17:59885942-59886022 1.0000 80 chr17:58698655-58698735 1.0000 80 chr17:57934527-57934607 1.0000 80 chr20:52252847-52252927 1.0000 80 chr20:52512125-52512205 1.0000 80 chr17:59825919-59825999 1.0000 80 chr5:170839423-170839503 1.0000 80 chr17:59552646-59552726 1.0000 80 chr17:59771632-59771712 1.0000 80 chr1:67874635-67874715 1.0000 80 chr20:49343838-49343918 1.0000 80 chr20:46207834-46207914 1.0000 80 chr17:59642517-59642597 1.0000 80 chr17:59566503-59566583 1.0000 80 chr17:58369857-58369937 1.0000 80 chr17:59871080-59871160 1.0000 80 chr20:52448473-52448553 1.0000 80 chr17:58528565-58528645 1.0000 80 chr1:52255231-52255311 1.0000 80 chr3:64924975-64925055 1.0000 80 chr20:46093270-46093350 1.0000 80 chr17:57160329-57160409 1.0000 80 chr20:45923380-45923460 1.0000 80 chr20:52326533-52326613 1.0000 80 chr10:79801099-79801179 1.0000 80 chr20:52374025-52374105 1.0000 80 chr17:59646078-59646158 1.0000 80 chr20:45924906-45924986 1.0000 80 chr20:46147530-46147610 1.0000 80 chr2:91769983-91770063 1.0000 80 chr20:52208769-52208849 1.0000 80 chr17:59909859-59909939 1.0000 80 chr3:170583200-170583280 1.0000 80 chr20:45800138-45800218 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_EWSR1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/EWSR1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.208 G 0.216 T 0.289 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.208 G 0.216 T 0.289 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSCCAGGC MEME-1 width = 8 sites = 25 llr = 223 E-value = 5.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::8::: pos.-specific C :4aa::39 probability G 76::2a71 matrix T ::::1::: bits 2.3 * * 2.0 ** * 1.8 ** * * 1.6 ** * * Relative 1.4 *** *** Entropy 1.1 **** *** (12.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCAGGC consensus AC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:52382553-52382633 50 5.60e-06 tcaccatgtt ggccaggc tggtctcgaa chr17:59964508-59964588 54 5.60e-06 ACTAAAGTAA ggccaggc aaagtggctc chr17:57168130-57168210 62 5.60e-06 tcactatgtt ggccaggc tggtgtcgaa chr12:57056120-57056200 9 5.60e-06 accatgtt ggccaggc tagttttgaa chr17:58770405-58770485 37 5.60e-06 tcaccatgtt ggccaggc tgatcttgaa chr20:52438599-52438679 7 1.10e-05 cttgtc gcccaggc tggagtgtaa chr20:52276246-52276326 10 2.58e-05 agccaccgc gcccagcc gaatcagtga chr20:55829359-55829439 12 2.58e-05 gagccaccgc gcccagcc TCTTTTGGTT chr20:52265557-52265637 61 2.58e-05 aaTCAAAATA ggccgggc aacatggctc chr17:58754314-58754394 50 2.58e-05 gagccaccac gcccagcc CACCACGCCT chr20:55693568-55693648 71 2.58e-05 AATGTCTCAG ggccgggc gc chr20:55843718-55843798 30 3.32e-05 ACAATTCAGA AGCCAGGC AGAGGAGGAC chr17:59896967-59897047 11 3.32e-05 aagtaaaata agccaggc acagaaagac chr20:52457229-52457309 37 3.32e-05 aaaatggtga agccaggC AGGTCAGACT chr17:59315839-59315919 35 4.45e-05 gagccaccac acccagGC ACAAGAGTAT chr20:45862326-45862406 56 5.42e-05 cactctctag ggcctggc tgctatcatt chr17:59491758-59491838 67 5.42e-05 CAATCCCTTG GGCCTGGC CCTTGG chr17:59434164-59434244 67 6.13e-05 CATTGCATGC AGCCAGCC ATGGCC chr10:79801099-79801179 37 6.72e-05 TGGGCCTGCT GGCCAGGG GGTGGTTGGA chr20:52374025-52374105 52 7.65e-05 gagccaccgc gcccggcc TTAAGTTTGT chr20:45870807-45870887 46 7.65e-05 gagccgctgc gcccggcc TATGTCTGTC chr20:52326533-52326613 6 8.90e-05 accac acccagcc cagaattcta chr17:58240921-58241001 68 9.46e-05 GATGTCCAAG GCCCAGGG AGGGG chr20:52360304-52360384 42 1.13e-04 gcataccagg tgccaggc actgccctgt chr20:49412435-49412515 26 1.77e-04 ATCTGTATCT GCCTAGGC AGAGTATtgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52382553-52382633 5.6e-06 49_[+1]_23 chr17:59964508-59964588 5.6e-06 53_[+1]_19 chr17:57168130-57168210 5.6e-06 61_[+1]_11 chr12:57056120-57056200 5.6e-06 8_[+1]_64 chr17:58770405-58770485 5.6e-06 36_[+1]_36 chr20:52438599-52438679 1.1e-05 6_[+1]_66 chr20:52276246-52276326 2.6e-05 9_[+1]_63 chr20:55829359-55829439 2.6e-05 11_[+1]_61 chr20:52265557-52265637 2.6e-05 60_[+1]_12 chr17:58754314-58754394 2.6e-05 49_[+1]_23 chr20:55693568-55693648 2.6e-05 70_[+1]_2 chr20:55843718-55843798 3.3e-05 29_[+1]_43 chr17:59896967-59897047 3.3e-05 10_[+1]_62 chr20:52457229-52457309 3.3e-05 36_[+1]_36 chr17:59315839-59315919 4.4e-05 34_[+1]_38 chr20:45862326-45862406 5.4e-05 55_[+1]_17 chr17:59491758-59491838 5.4e-05 66_[+1]_6 chr17:59434164-59434244 6.1e-05 66_[+1]_6 chr10:79801099-79801179 6.7e-05 36_[+1]_36 chr20:52374025-52374105 7.7e-05 51_[+1]_21 chr20:45870807-45870887 7.7e-05 45_[+1]_27 chr20:52326533-52326613 8.9e-05 5_[+1]_67 chr17:58240921-58241001 9.5e-05 67_[+1]_5 chr20:52360304-52360384 0.00011 41_[+1]_31 chr20:49412435-49412515 0.00018 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCCAGGC width=8 seqs=25 chr20:52382553-52382633 ( 50) GGCCAGGC 1 chr17:59964508-59964588 ( 54) GGCCAGGC 1 chr17:57168130-57168210 ( 62) GGCCAGGC 1 chr12:57056120-57056200 ( 9) GGCCAGGC 1 chr17:58770405-58770485 ( 37) GGCCAGGC 1 chr20:52438599-52438679 ( 7) GCCCAGGC 1 chr20:52276246-52276326 ( 10) GCCCAGCC 1 chr20:55829359-55829439 ( 12) GCCCAGCC 1 chr20:52265557-52265637 ( 61) GGCCGGGC 1 chr17:58754314-58754394 ( 50) GCCCAGCC 1 chr20:55693568-55693648 ( 71) GGCCGGGC 1 chr20:55843718-55843798 ( 30) AGCCAGGC 1 chr17:59896967-59897047 ( 11) AGCCAGGC 1 chr20:52457229-52457309 ( 37) AGCCAGGC 1 chr17:59315839-59315919 ( 35) ACCCAGGC 1 chr20:45862326-45862406 ( 56) GGCCTGGC 1 chr17:59491758-59491838 ( 67) GGCCTGGC 1 chr17:59434164-59434244 ( 67) AGCCAGCC 1 chr10:79801099-79801179 ( 37) GGCCAGGG 1 chr20:52374025-52374105 ( 52) GCCCGGCC 1 chr20:45870807-45870887 ( 46) GCCCGGCC 1 chr20:52326533-52326613 ( 6) ACCCAGCC 1 chr17:58240921-58241001 ( 68) GCCCAGGG 1 chr20:52360304-52360384 ( 42) TGCCAGGC 1 chr20:49412435-49412515 ( 26) GCCTAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 5.4e-002 -26 -1129 173 -285 -1129 94 147 -1129 -1129 226 -1129 -1129 -1129 221 -1129 -285 141 -1129 -44 -185 -1129 -1129 221 -1129 -1129 43 173 -1129 -1129 214 -143 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.4e-002 0.240000 0.000000 0.720000 0.040000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.760000 0.000000 0.160000 0.080000 0.000000 0.000000 1.000000 0.000000 0.000000 0.280000 0.720000 0.000000 0.000000 0.920000 0.080000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCAGGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GC]CCAG[GC]C -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGCCAC MEME-2 width = 8 sites = 8 llr = 92 E-value = 2.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C ::::aa:a probability G :a:a:::: matrix T a::::::: bits 2.3 * *** * 2.0 * *** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGAGCCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:52374025-52374105 41 9.92e-06 atcacaggtg tgagccac cgcgcccggc chr20:46166603-46166683 4 9.92e-06 gca tgagccac tgtgcctggc chr20:55829359-55829439 1 9.92e-06 . tgagccac cgcgcccagc chr17:59315839-59315919 24 9.92e-06 attacagttg tgagccac cacacccagG chr17:58686671-58686751 64 9.92e-06 attacaggtg tgagccac cgtgcccag chr17:58754314-58754394 39 9.92e-06 attgcaggcg tgagccac cacgcccagc chr20:52442023-52442103 27 9.92e-06 ATTTGGTCTA TGAGCCAC AAAACCTTGT chr17:59436134-59436214 4 9.92e-06 gtg tgagccac cgcgtctggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52374025-52374105 9.9e-06 40_[+2]_32 chr20:46166603-46166683 9.9e-06 3_[+2]_69 chr20:55829359-55829439 9.9e-06 [+2]_72 chr17:59315839-59315919 9.9e-06 23_[+2]_49 chr17:58686671-58686751 9.9e-06 63_[+2]_9 chr17:58754314-58754394 9.9e-06 38_[+2]_34 chr20:52442023-52442103 9.9e-06 26_[+2]_46 chr17:59436134-59436214 9.9e-06 3_[+2]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGCCAC width=8 seqs=8 chr20:52374025-52374105 ( 41) TGAGCCAC 1 chr20:46166603-46166683 ( 4) TGAGCCAC 1 chr20:55829359-55829439 ( 1) TGAGCCAC 1 chr17:59315839-59315919 ( 24) TGAGCCAC 1 chr17:58686671-58686751 ( 64) TGAGCCAC 1 chr17:58754314-58754394 ( 39) TGAGCCAC 1 chr20:52442023-52442103 ( 27) TGAGCCAC 1 chr17:59436134-59436214 ( 4) TGAGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 2.5e+000 -965 -965 -965 179 -965 -965 221 -965 180 -965 -965 -965 -965 -965 221 -965 -965 226 -965 -965 -965 226 -965 -965 180 -965 -965 -965 -965 226 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.5e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGCCAC MEME-2 regular expression -------------------------------------------------------------------------------- TGAGCCAC -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAGCAC MEME-3 width = 8 sites = 9 llr = 98 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:a:2a: pos.-specific C a9a::8:a probability G ::::a::: matrix T :::::::: bits 2.3 * * * * 2.0 * * * * 1.8 ***** ** 1.6 ***** ** Relative 1.4 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:45998401-45998481 59 6.88e-06 cgccagtaat cccagcac tttaggaggc chr17:59483752-59483832 27 6.88e-06 ACCTTGAGTT CCCAGCAC CCCCAGCCAC chr20:52383252-52383332 63 6.88e-06 tgcctgtaat cccagcac tttgggaggc chr20:55826055-55826135 14 6.88e-06 TGCTCTGGAC CCCAGCAC AAACCAGCAG chr20:52271222-52271302 25 6.88e-06 ggcctgtaat cccagcac tttgggaggc chr20:52299604-52299684 38 6.88e-06 cggttgtaat cccagcac tttgggaggc chr20:52447879-52447959 54 1.63e-05 ctcctgtcat cccagaac tttgggaggc chr17:59815750-59815830 73 1.63e-05 CTCCCCTCTA CCCAGAAC chr17:56075785-56075865 9 2.58e-05 CTCTAATA CACAGCAC CTGAGGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:45998401-45998481 6.9e-06 58_[+3]_14 chr17:59483752-59483832 6.9e-06 26_[+3]_46 chr20:52383252-52383332 6.9e-06 62_[+3]_10 chr20:55826055-55826135 6.9e-06 13_[+3]_59 chr20:52271222-52271302 6.9e-06 24_[+3]_48 chr20:52299604-52299684 6.9e-06 37_[+3]_35 chr20:52447879-52447959 1.6e-05 53_[+3]_19 chr17:59815750-59815830 1.6e-05 72_[+3] chr17:56075785-56075865 2.6e-05 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAGCAC width=8 seqs=9 chr20:45998401-45998481 ( 59) CCCAGCAC 1 chr17:59483752-59483832 ( 27) CCCAGCAC 1 chr20:52383252-52383332 ( 63) CCCAGCAC 1 chr20:55826055-55826135 ( 14) CCCAGCAC 1 chr20:52271222-52271302 ( 25) CCCAGCAC 1 chr20:52299604-52299684 ( 38) CCCAGCAC 1 chr20:52447879-52447959 ( 54) CCCAGAAC 1 chr17:59815750-59815830 ( 73) CCCAGAAC 1 chr17:56075785-56075865 ( 9) CACAGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 2.4e+001 -982 226 -982 -982 -136 209 -982 -982 -982 226 -982 -982 180 -982 -982 -982 -982 -982 221 -982 -37 190 -982 -982 180 -982 -982 -982 -982 226 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.4e+001 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCAC MEME-3 regular expression -------------------------------------------------------------------------------- CCCAG[CA]AC -------------------------------------------------------------------------------- Time 12.64 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGCTGG MEME-4 width = 8 sites = 9 llr = 97 E-value = 1.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:::::2: pos.-specific C ::::a::: probability G :a:a::8a matrix T ::a::a:: bits 2.3 * ** * 2.0 * ** * 1.8 ****** * 1.6 ****** * Relative 1.4 ******** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGTGCTGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:52374025-52374105 22 1.08e-05 ggcttcccaa agtgctgg gatcacaggt chr20:45870807-45870887 16 1.08e-05 ggcctcccaa agtgctgg gattacaggc chr17:59315839-59315919 5 1.08e-05 ccaa agtgctgg gattacagtt chr17:59514495-59514575 52 1.08e-05 tcttctttcc agtgctgg ctgatatcct chr17:59488819-59488899 36 1.08e-05 CAGGAGGGCC AGTGCTGG GACGATGGCG chr20:55734676-55734756 66 1.08e-05 ggaatgcttc agtgctgg ctgtgaa chr20:52339703-52339783 73 1.08e-05 ctctgttgtc agtgctgg chr12:57056120-57056200 66 2.51e-05 agcctcccaa agtgctag gattaca chr17:58686671-58686751 45 2.51e-05 ggcctcccaa agtgctag gattacaggt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52374025-52374105 1.1e-05 21_[+4]_51 chr20:45870807-45870887 1.1e-05 15_[+4]_57 chr17:59315839-59315919 1.1e-05 4_[+4]_68 chr17:59514495-59514575 1.1e-05 51_[+4]_21 chr17:59488819-59488899 1.1e-05 35_[+4]_37 chr20:55734676-55734756 1.1e-05 65_[+4]_7 chr20:52339703-52339783 1.1e-05 72_[+4] chr12:57056120-57056200 2.5e-05 65_[+4]_7 chr17:58686671-58686751 2.5e-05 44_[+4]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGCTGG width=8 seqs=9 chr20:52374025-52374105 ( 22) AGTGCTGG 1 chr20:45870807-45870887 ( 16) AGTGCTGG 1 chr17:59315839-59315919 ( 5) AGTGCTGG 1 chr17:59514495-59514575 ( 52) AGTGCTGG 1 chr17:59488819-59488899 ( 36) AGTGCTGG 1 chr20:55734676-55734756 ( 66) AGTGCTGG 1 chr20:52339703-52339783 ( 73) AGTGCTGG 1 chr12:57056120-57056200 ( 66) AGTGCTAG 1 chr17:58686671-58686751 ( 45) AGTGCTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 1.7e+002 180 -982 -982 -982 -982 -982 221 -982 -982 -982 -982 179 -982 -982 221 -982 -982 226 -982 -982 -982 -982 -982 179 -37 -982 184 -982 -982 -982 221 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.7e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGG MEME-4 regular expression -------------------------------------------------------------------------------- AGTGCT[GA]G -------------------------------------------------------------------------------- Time 16.41 secs. ******************************************************************************** ******************************************************************************** MOTIF MCTCCTGR MEME-5 width = 8 sites = 14 llr = 133 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4::::1:4 pos.-specific C 6a:8a::: probability G :::2::a6 matrix T ::a::9:: bits 2.3 * * * 2.0 * * * 1.8 ** * * 1.6 **** * Relative 1.4 ****** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCTGG consensus A G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:52441486-52441566 12 7.29e-06 CTGTCCTGAC CCTCCtgg acatgttgag chr20:52434120-52434200 18 7.29e-06 gcaacctcag cctcctgg gttcaaccga chr20:52566796-52566876 61 7.29e-06 gctgtcccct cctcctgg aagaaagagc chr8:146013359-146013439 13 7.29e-06 GAAACACCGC CCTCCTGG ATTCTTTCTC chr20:52266171-52266251 17 2.70e-05 cctgccttag cctcctga gtagctggaa chr20:52438599-52438679 55 2.70e-05 gcaacctcta actcctgg gttcaagcaa chr20:52394645-52394725 21 3.46e-05 GAGATGAATG CCTGCTGG AAACTAGAAC chr17:59488819-59488899 57 3.46e-05 GATGGCGATA CCTGCTGG CGGCCTAGCC chr17:59911198-59911278 40 3.46e-05 cagaGATTTT CCTGCTGG CTGAACATGA chr12:57056120-57056200 26 4.78e-05 ctagttttga actcctga tctcaggcga chr17:58770405-58770485 54 4.78e-05 ctgatcttga actcctga cctcaggtca chr17:58686671-58686751 7 4.78e-05 tctcga actcctga cctcgtgatc chr1:245016139-245016219 33 4.78e-05 CTACAGTTTG ACTCCTGA TTCCTCACTT chr17:59956657-59956737 19 7.55e-05 TTGAAACTTT CCTCCAGG TGGTCCCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52441486-52441566 7.3e-06 11_[+5]_61 chr20:52434120-52434200 7.3e-06 17_[+5]_55 chr20:52566796-52566876 7.3e-06 60_[+5]_12 chr8:146013359-146013439 7.3e-06 12_[+5]_60 chr20:52266171-52266251 2.7e-05 16_[+5]_56 chr20:52438599-52438679 2.7e-05 54_[+5]_18 chr20:52394645-52394725 3.5e-05 20_[+5]_52 chr17:59488819-59488899 3.5e-05 56_[+5]_16 chr17:59911198-59911278 3.5e-05 39_[+5]_33 chr12:57056120-57056200 4.8e-05 25_[+5]_47 chr17:58770405-58770485 4.8e-05 53_[+5]_19 chr17:58686671-58686751 4.8e-05 6_[+5]_66 chr1:245016139-245016219 4.8e-05 32_[+5]_40 chr17:59956657-59956737 7.5e-05 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCTCCTGR width=8 seqs=14 chr20:52441486-52441566 ( 12) CCTCCTGG 1 chr20:52434120-52434200 ( 18) CCTCCTGG 1 chr20:52566796-52566876 ( 61) CCTCCTGG 1 chr8:146013359-146013439 ( 13) CCTCCTGG 1 chr20:52266171-52266251 ( 17) CCTCCTGA 1 chr20:52438599-52438679 ( 55) ACTCCTGG 1 chr20:52394645-52394725 ( 21) CCTGCTGG 1 chr17:59488819-59488899 ( 57) CCTGCTGG 1 chr17:59911198-59911278 ( 40) CCTGCTGG 1 chr12:57056120-57056200 ( 26) ACTCCTGA 1 chr17:58770405-58770485 ( 54) ACTCCTGA 1 chr17:58686671-58686751 ( 7) ACTCCTGA 1 chr1:245016139-245016219 ( 33) ACTCCTGA 1 chr17:59956657-59956737 ( 19) CCTCCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.5e+004 32 163 -1045 -1045 -1045 226 -1045 -1045 -1045 -1045 -1045 179 -1045 192 -1 -1045 -1045 226 -1045 -1045 -200 -1045 -1045 168 -1045 -1045 221 -1045 32 -1045 157 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.5e+004 0.357143 0.642857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.785714 0.214286 0.000000 0.000000 1.000000 0.000000 0.000000 0.071429 0.000000 0.000000 0.928571 0.000000 0.000000 1.000000 0.000000 0.357143 0.000000 0.642857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCTCCTGR MEME-5 regular expression -------------------------------------------------------------------------------- [CA]CT[CG]CTG[GA] -------------------------------------------------------------------------------- Time 20.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52280857-52280937 1.86e-01 80 chr20:52339703-52339783 3.65e-02 72_[+4(1.08e-05)] chr20:52211730-52211810 8.48e-01 80 chr20:52482713-52482793 6.00e-03 80 chr17:56075785-56075865 4.15e-02 8_[+3(2.58e-05)]_64 chr17:59722491-59722571 9.75e-01 80 chr20:52468728-52468808 3.64e-01 80 chr20:49382377-49382457 9.76e-01 80 chr17:59748175-59748255 2.47e-01 80 chr17:59436134-59436214 3.77e-02 3_[+2(9.92e-06)]_69 chr20:52483447-52483527 2.43e-01 80 chr20:55734676-55734756 2.40e-02 65_[+4(1.08e-05)]_7 chr20:52462672-52462752 9.82e-01 80 chr17:59434164-59434244 8.07e-02 66_[+1(6.13e-05)]_6 chr20:46018822-46018902 3.40e-01 80 chr5:81571141-81571221 7.06e-01 80 chr20:52360304-52360384 9.66e-03 80 chr17:59806001-59806081 6.62e-02 80 chr5:10265533-10265613 5.11e-01 80 chr20:52216536-52216616 1.90e-02 29_[+5(8.93e-05)]_43 chr17:59856061-59856141 2.46e-01 80 chr20:45948251-45948331 1.83e-01 80 chr17:57936991-57937071 9.52e-01 80 chr17:59491758-59491838 8.62e-02 66_[+1(5.42e-05)]_6 chr17:59509301-59509381 8.72e-01 80 chr20:52299604-52299684 3.63e-02 37_[+3(6.88e-06)]_35 chr20:52423280-52423360 1.37e-01 80 chr20:52340294-52340374 7.85e-01 80 chr20:49412435-49412515 1.17e-02 80 chr20:52438599-52438679 4.08e-04 6_[+1(1.10e-05)]_40_[+5(2.70e-05)]_\ 18 chr17:59955351-59955431 9.51e-01 80 chr20:52284730-52284810 7.27e-01 80 chr8:146013359-146013439 2.01e-03 12_[+5(7.29e-06)]_60 chr17:59313340-59313420 8.39e-01 80 chr20:52308168-52308248 4.58e-01 80 chr20:52364879-52364959 5.87e-01 80 chr17:59709904-59709984 8.54e-03 80 chr20:52293179-52293259 9.98e-01 80 chr17:59911198-59911278 1.40e-02 39_[+5(3.46e-05)]_33 chr20:52566796-52566876 5.36e-04 60_[+5(7.29e-06)]_12 chr20:52184052-52184132 1.98e-01 80 chr20:49358508-49358588 5.17e-01 80 chr20:52434120-52434200 7.19e-03 17_[+5(7.29e-06)]_24_[+5(2.70e-05)]_\ 23 chr20:52441486-52441566 5.74e-03 11_[+5(7.29e-06)]_61 chr20:52501749-52501829 7.59e-01 80 chr20:52273413-52273493 9.32e-01 80 chr17:59800761-59800841 8.11e-01 80 chr20:52229214-52229294 6.75e-01 80 chr20:55842295-55842375 4.71e-01 80 chr20:52420492-52420572 2.32e-01 80 chr20:46137118-46137198 2.53e-01 80 chr20:52345048-52345128 5.15e-01 80 chr20:52396608-52396688 6.14e-01 80 chr17:59488819-59488899 1.91e-06 35_[+4(1.08e-05)]_13_[+5(3.46e-05)]_\ 16 chr11:34124756-34124836 5.11e-01 80 chr17:58392877-58392957 3.46e-01 80 chr6:16150436-16150516 9.22e-02 80 chr20:46064404-46064484 6.73e-02 80 chr17:57969531-57969611 8.87e-01 80 chr17:59358857-59358937 9.94e-01 80 chr20:52442023-52442103 4.30e-04 26_[+2(9.92e-06)]_46 chr11:5265184-5265264 1.91e-01 80 chr20:52278343-52278423 5.56e-01 80 chr17:59398837-59398917 5.86e-01 80 chr2:55464275-55464355 8.84e-01 80 chr17:59397050-59397130 2.30e-01 80 chr17:57973975-57974055 9.11e-01 80 chr20:52456059-52456139 1.22e-01 80 chr17:58811938-58812018 7.89e-01 80 chr17:59941431-59941511 5.54e-01 80 chr20:55782563-55782643 6.07e-01 80 chr17:57067129-57067209 8.17e-01 80 chr1:8929234-8929314 5.15e-01 80 chr20:49380699-49380779 8.61e-03 80 chr20:52536677-52536757 1.93e-01 80 chr3:9427812-9427892 7.56e-01 80 chr2:150421677-150421757 9.04e-01 80 chr20:55763977-55764057 1.20e-01 80 chr20:52271222-52271302 1.28e-03 24_[+3(6.88e-06)]_48 chr17:58155663-58155743 7.56e-01 80 chr20:52200811-52200891 8.38e-01 80 chr17:57919070-57919150 2.11e-01 80 chr1:245016139-245016219 1.04e-01 32_[+5(4.78e-05)]_40 chr20:45872049-45872129 7.71e-01 80 chr20:45976553-45976633 3.18e-01 80 chr5:177578497-177578577 6.91e-03 80 chr17:60188430-60188510 3.94e-01 80 chr20:55693568-55693648 5.93e-03 70_[+1(2.58e-05)]_2 chr20:49350590-49350670 6.50e-01 80 chr7:129244671-129244751 5.08e-03 80 chr20:52231430-52231510 8.95e-01 80 chr17:58754314-58754394 2.52e-06 38_[+2(9.92e-06)]_3_[+1(2.58e-05)]_\ 23 chr20:52469290-52469370 4.97e-01 80 chr17:58686671-58686751 1.12e-06 6_[+5(4.78e-05)]_30_[+4(2.51e-05)]_\ 11_[+2(9.92e-06)]_9 chr17:59514495-59514575 2.13e-02 51_[+4(1.08e-05)]_21 chr2:101624175-101624255 4.87e-01 80 chr20:52836409-52836489 1.00e+00 80 chr20:52261378-52261458 5.16e-03 80 chr20:52311388-52311468 9.30e-01 80 chr20:52305602-52305682 6.06e-01 80 chr17:57984062-57984142 3.42e-02 80 chr17:58373807-58373887 4.89e-01 80 chr17:59962377-59962457 9.74e-01 80 chr20:52575537-52575617 9.50e-01 80 chr17:59939849-59939929 6.06e-01 80 chr20:52581734-52581814 8.41e-01 80 chr20:55826055-55826135 5.47e-03 13_[+3(6.88e-06)]_59 chr17:59345377-59345457 3.25e-01 80 chr17:59615970-59616050 2.15e-01 80 chr17:58847436-58847516 2.29e-01 80 chr17:59787108-59787188 8.28e-01 80 chr17:59519674-59519754 4.17e-01 80 chr17:59638904-59638984 7.59e-03 80 chr20:52368707-52368787 8.56e-01 80 chr17:58770405-58770485 1.05e-03 36_[+1(5.60e-06)]_9_[+5(4.78e-05)]_\ 19 chr17:58212205-58212285 1.11e-01 80 chr17:58699734-58699814 9.89e-01 80 chr20:52740312-52740392 2.05e-01 80 chr20:52618892-52618972 9.80e-01 80 chr20:52410552-52410632 9.99e-01 80 chrX:48437286-48437366 3.06e-01 80 chr20:52213806-52213886 2.02e-01 80 chr17:59956657-59956737 1.12e-02 18_[+5(7.55e-05)]_54 chr17:59663694-59663774 9.05e-01 80 chr17:58563096-58563176 7.96e-01 80 chr12:57056120-57056200 2.19e-06 8_[+1(5.60e-06)]_9_[+5(4.78e-05)]_\ 32_[+4(2.51e-05)]_7 chr20:52457229-52457309 2.98e-03 36_[+1(3.32e-05)]_36 chr20:54152215-54152295 5.35e-01 80 chr17:58448949-58449029 7.25e-01 80 chr17:59577791-59577871 3.98e-01 80 chr20:52360875-52360955 5.75e-03 42_[+2(8.38e-05)]_30 chr17:59894948-59895028 4.38e-01 80 chr20:52394645-52394725 1.48e-02 20_[+5(3.46e-05)]_52 chr20:52351617-52351697 6.10e-01 80 chr20:52392428-52392508 1.60e-01 80 chr17:59824070-59824150 9.74e-01 80 chr17:58717886-58717966 9.98e-01 80 chr20:52341657-52341737 5.17e-02 80 chr17:59315839-59315919 3.99e-07 4_[+4(1.08e-05)]_11_[+2(9.92e-06)]_\ 3_[+1(4.45e-05)]_38 chr17:58240921-58241001 4.69e-02 67_[+1(9.46e-05)]_5 chr20:53263696-53263776 6.50e-01 80 chr20:49309682-49309762 4.70e-01 80 chr17:59624634-59624714 6.97e-01 80 chr20:52300804-52300884 1.22e-01 80 chr17:59872404-59872484 6.95e-01 80 chr20:46134099-46134179 6.28e-01 80 chr20:52380161-52380241 2.93e-01 80 chr20:52497969-52498049 1.36e-01 80 chr17:59896967-59897047 8.36e-03 10_[+1(3.32e-05)]_62 chr17:59598433-59598513 5.48e-01 80 chr17:57168130-57168210 1.01e-03 61_[+1(5.60e-06)]_11 chr7:30102417-30102497 1.00e+00 80 chr20:45870807-45870887 1.23e-05 15_[+4(1.08e-05)]_11_[+2(8.38e-05)]_\ 3_[+1(7.65e-05)]_27 chr20:55843718-55843798 3.25e-02 29_[+1(3.32e-05)]_43 chr20:52250874-52250954 6.22e-01 80 chr20:52318994-52319074 2.73e-01 80 chr17:59476078-59476158 1.03e-01 80 chr5:10266338-10266418 1.99e-01 6_[+2(8.38e-05)]_66 chr17:58031491-58031571 3.20e-01 80 chr17:58303578-58303658 5.69e-01 80 chr20:52504384-52504464 4.46e-01 80 chr3:39451912-39451992 3.69e-01 80 chr20:52390752-52390832 2.67e-01 80 chr20:52714734-52714814 2.19e-01 80 chr20:52265557-52265637 6.12e-03 60_[+1(2.58e-05)]_12 chr17:59775793-59775873 6.10e-01 80 chr17:59816550-59816630 4.89e-01 80 chr17:59652266-59652346 7.53e-02 80 chr17:59794964-59795044 4.00e-01 80 chr17:59964508-59964588 1.18e-02 53_[+1(5.60e-06)]_19 chr17:59731118-59731198 5.11e-02 80 chr20:52383252-52383332 2.44e-03 62_[+3(6.88e-06)]_10 chr20:46189249-46189329 8.65e-01 80 chr20:52271927-52272007 2.12e-01 80 chr20:52530062-52530142 8.36e-01 80 chr20:49403926-49404006 6.77e-01 80 chr20:52376818-52376898 4.88e-01 80 chr17:59483752-59483832 4.13e-03 26_[+3(6.88e-06)]_46 chr17:59773326-59773406 3.63e-01 80 chr17:59815750-59815830 2.16e-02 72_[+3(1.63e-05)] chr20:46159668-46159748 9.95e-01 80 chr1:113453620-113453700 7.10e-01 80 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requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************