******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETV6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:89530713-89530793 1.0000 80 chr1:213005282-213005362 1.0000 80 chr17:58475835-58475915 1.0000 80 chr1:153917706-153917786 1.0000 80 chr2:9195768-9195848 1.0000 80 chr1:21501963-21502043 1.0000 80 chr5:10445619-10445699 1.0000 80 chr6:15087022-15087102 1.0000 80 chr16:81503640-81503720 1.0000 80 chr19:55538271-55538351 1.0000 80 chr1:154465935-154466015 1.0000 80 chr11:109940283-10994036 1.0000 80 chr5:10705162-10705242 1.0000 80 chr6:137612766-137612846 1.0000 80 chr2:159077716-159077796 1.0000 80 chr10:118997053-11899713 1.0000 80 chr7:5733220-5733300 1.0000 80 chr12:51019913-51019993 1.0000 80 chr4:190511252-190511332 1.0000 80 chr16:5610282-5610362 1.0000 80 chr16:89683226-89683306 1.0000 80 chr5:78056390-78056470 1.0000 80 chr6:25006922-25007002 1.0000 80 chr15:37404571-37404651 1.0000 80 chr11:74494731-74494811 1.0000 80 chr15:41199277-41199357 1.0000 80 chr19:54272516-54272596 1.0000 80 chr1:94282615-94282695 1.0000 80 chr2:219543987-219544067 1.0000 80 chr18:45526333-45526413 1.0000 80 chr4:184317699-184317779 1.0000 80 chr19:8791736-8791816 1.0000 80 chr10:81698757-81698837 1.0000 80 chr1:26158426-26158506 1.0000 80 chr5:141062743-141062823 1.0000 80 chr3:43431318-43431398 1.0000 80 chr3:138989655-138989735 1.0000 80 chr3:171046633-171046713 1.0000 80 chr2:178104912-178104992 1.0000 80 chr4:139228661-139228741 1.0000 80 chr7:100273532-100273612 1.0000 80 chr4:108631175-108631255 1.0000 80 chr2:47714468-47714548 1.0000 80 chr17:7746379-7746459 1.0000 80 chr6:158430674-158430754 1.0000 80 chr5:132109848-132109928 1.0000 80 chr11:75051875-75051955 1.0000 80 chrX:37614486-37614566 1.0000 80 chrX:153947699-153947779 1.0000 80 chr15:55514927-55515007 1.0000 80 chr12:57479994-57480074 1.0000 80 chr4:84540255-84540335 1.0000 80 chr9:129748244-129748324 1.0000 80 chr17:39723795-39723875 1.0000 80 chr1:154358165-154358245 1.0000 80 chr19:54523642-54523722 1.0000 80 chr5:544277-544357 1.0000 80 chr4:48214381-48214461 1.0000 80 chr17:75338571-75338651 1.0000 80 chr11:12907528-12907608 1.0000 80 chr19:46018524-46018604 1.0000 80 chr10:4191723-4191803 1.0000 80 chr2:69097511-69097591 1.0000 80 chr11:35080773-35080853 1.0000 80 chr2:64447545-64447625 1.0000 80 chr2:103035057-103035137 1.0000 80 chr2:103511959-103512039 1.0000 80 chr4:82329641-82329721 1.0000 80 chr3:197482709-197482789 1.0000 80 chr15:81400334-81400414 1.0000 80 chr6:137546185-137546265 1.0000 80 chr19:34761007-34761087 1.0000 80 chr5:141888319-141888399 1.0000 80 chr2:122368119-122368199 1.0000 80 chr19:55553355-55553435 1.0000 80 chr4:147432682-147432762 1.0000 80 chr10:104153805-10415388 1.0000 80 chr13:80022737-80022817 1.0000 80 chr16:87814447-87814527 1.0000 80 chr5:139991722-139991802 1.0000 80 chr22:30831858-30831938 1.0000 80 chr17:15340198-15340278 1.0000 80 chr8:67015835-67015915 1.0000 80 chr3:197482908-197482988 1.0000 80 chrX:118149572-118149652 1.0000 80 chr1:203256731-203256811 1.0000 80 chr10:15367767-15367847 1.0000 80 chr9:140610766-140610846 1.0000 80 chr17:70974298-70974378 1.0000 80 chr1:246187547-246187627 1.0000 80 chr16:81517175-81517255 1.0000 80 chr7:97762647-97762727 1.0000 80 chr15:67158538-67158618 1.0000 80 chr1:27112805-27112885 1.0000 80 chr1:42149843-42149923 1.0000 80 chr10:25201321-25201401 1.0000 80 chr4:185276470-185276550 1.0000 80 chr4:153320570-153320650 1.0000 80 chr5:108992666-108992746 1.0000 80 chr16:55786864-55786944 1.0000 80 chr14:81889913-81889993 1.0000 80 chr9:126597543-126597623 1.0000 80 chr10:129861491-12986157 1.0000 80 chr19:55428376-55428456 1.0000 80 chr12:89740283-89740363 1.0000 80 chr20:61317622-61317702 1.0000 80 chr18:23570604-23570684 1.0000 80 chr3:15342024-15342104 1.0000 80 chr20:61371714-61371794 1.0000 80 chr17:61524461-61524541 1.0000 80 chr15:91590904-91590984 1.0000 80 chr11:12111727-12111807 1.0000 80 chr12:1772043-1772123 1.0000 80 chr6:143419312-143419392 1.0000 80 chr22:32026471-32026551 1.0000 80 chr1:154462950-154463030 1.0000 80 chr5:42995194-42995274 1.0000 80 chr16:23914158-23914238 1.0000 80 chr8:29387484-29387564 1.0000 80 chr1:40525284-40525364 1.0000 80 chr20:48964738-48964818 1.0000 80 chr10:45899648-45899728 1.0000 80 chr1:92178761-92178841 1.0000 80 chr9:134391496-134391576 1.0000 80 chr20:56008156-56008236 1.0000 80 chr3:172230363-172230443 1.0000 80 chr6:30477093-30477173 1.0000 80 chr6:107297603-107297683 1.0000 80 chr10:12824613-12824693 1.0000 80 chr10:23305685-23305765 1.0000 80 chr21:46300947-46301027 1.0000 80 chr10:70975362-70975442 1.0000 80 chr20:21603853-21603933 1.0000 80 chr11:13112059-13112139 1.0000 80 chr19:18429159-18429239 1.0000 80 chr14:74210316-74210396 1.0000 80 chr16:71021155-71021235 1.0000 80 chr11:121979058-12197913 1.0000 80 chr17:79283169-79283249 1.0000 80 chr10:32266438-32266518 1.0000 80 chr14:20958863-20958943 1.0000 80 chr8:142183500-142183580 1.0000 80 chr11:46340330-46340410 1.0000 80 chr1:231113233-231113313 1.0000 80 chr12:50093165-50093245 1.0000 80 chr20:37433757-37433837 1.0000 80 chr4:73419411-73419491 1.0000 80 chr13:74339840-74339920 1.0000 80 chr2:69001940-69002020 1.0000 80 chr8:142424982-142425062 1.0000 80 chr16:23913954-23914034 1.0000 80 chr22:37309562-37309642 1.0000 80 chr5:141703507-141703587 1.0000 80 chr11:10603265-10603345 1.0000 80 chr5:134817203-134817283 1.0000 80 chr10:103454660-10345474 1.0000 80 chr7:106505683-106505763 1.0000 80 chr1:198526194-198526274 1.0000 80 chr1:51899433-51899513 1.0000 80 chr12:47754626-47754706 1.0000 80 chr2:149400811-149400891 1.0000 80 chr9:140388685-140388765 1.0000 80 chr5:10787133-10787213 1.0000 80 chr18:830567-830647 1.0000 80 chr12:51018940-51019020 1.0000 80 chr3:154745038-154745118 1.0000 80 chr3:142425649-142425729 1.0000 80 chr3:99564352-99564432 1.0000 80 chr20:1396796-1396876 1.0000 80 chr12:11951947-11952027 1.0000 80 chr2:122369472-122369552 1.0000 80 chr8:11314290-11314370 1.0000 80 chr15:81292164-81292244 1.0000 80 chr10:104561895-10456197 1.0000 80 chr19:55538650-55538730 1.0000 80 chr6:150614747-150614827 1.0000 80 chr3:42888796-42888876 1.0000 80 chr10:4375808-4375888 1.0000 80 chr10:6625541-6625621 1.0000 80 chr6:16858588-16858668 1.0000 80 chr19:42387215-42387295 1.0000 80 chr6:135628050-135628130 1.0000 80 chr15:90602841-90602921 1.0000 80 chr7:100485365-100485445 1.0000 80 chr20:54994214-54994294 1.0000 80 chr11:3853148-3853228 1.0000 80 chr6:147271560-147271640 1.0000 80 chr4:186123758-186123838 1.0000 80 chr1:160635448-160635528 1.0000 80 chr1:243428197-243428277 1.0000 80 chr2:16806630-16806710 1.0000 80 chr15:89560784-89560864 1.0000 80 chr14:55368925-55369005 1.0000 80 chr19:6892147-6892227 1.0000 80 chr16:20915933-20916013 1.0000 80 chr7:157283417-157283497 1.0000 80 chr12:6446470-6446550 1.0000 80 chrX:153946257-153946337 1.0000 80 chr2:230786093-230786173 1.0000 80 chr3:33049900-33049980 1.0000 80 chr12:93362384-93362464 1.0000 80 chr7:67383321-67383401 1.0000 80 chr6:41907424-41907504 1.0000 80 chr12:1771277-1771357 1.0000 80 chr11:56894370-56894450 1.0000 80 chr15:43398318-43398398 1.0000 80 chr2:103035256-103035336 1.0000 80 chr2:121010821-121010901 1.0000 80 chr2:179542427-179542507 1.0000 80 chr20:55004767-55004847 1.0000 80 chr16:55787135-55787215 1.0000 80 chr4:38320918-38320998 1.0000 80 chr1:113162869-113162949 1.0000 80 chr21:34673487-34673567 1.0000 80 chr2:47406602-47406682 1.0000 80 chr2:112813882-112813962 1.0000 80 chr14:81882684-81882764 1.0000 80 chr6:45463695-45463775 1.0000 80 chrX:2547642-2547722 1.0000 80 chr1:206845512-206845592 1.0000 80 chr3:15381551-15381631 1.0000 80 chr19:55538850-55538930 1.0000 80 chr9:101820338-101820418 1.0000 80 chr9:86237823-86237903 1.0000 80 chr19:35453455-35453535 1.0000 80 chr19:51631152-51631232 1.0000 80 chr3:151589556-151589636 1.0000 80 chr16:57834556-57834636 1.0000 80 chr10:5529631-5529711 1.0000 80 chr5:43040483-43040563 1.0000 80 chr8:130249987-130250067 1.0000 80 chr2:38893829-38893909 1.0000 80 chr1:203258745-203258825 1.0000 80 chr12:3206742-3206822 1.0000 80 chr10:89879994-89880074 1.0000 80 chr1:235460176-235460256 1.0000 80 chr16:78462229-78462309 1.0000 80 chr8:13082135-13082215 1.0000 80 chr16:20922214-20922294 1.0000 80 chr17:56416716-56416796 1.0000 80 chr17:57611230-57611310 1.0000 80 chr14:91668863-91668943 1.0000 80 chr12:131239134-13123921 1.0000 80 chr3:141401058-141401138 1.0000 80 chr1:160635648-160635728 1.0000 80 chr1:183962404-183962484 1.0000 80 chr15:90732332-90732412 1.0000 80 chr1:173657678-173657758 1.0000 80 chr6:154676270-154676350 1.0000 80 chr16:23838004-23838084 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ETV6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETV6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.254 G 0.251 T 0.251 Background letter frequencies (from file dataset with add-one prior applied): A 0.244 C 0.254 G 0.251 T 0.251 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACTTCCTS MEME-1 width = 8 sites = 145 llr = 1164 E-value = 1.4e-140 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7::::::: pos.-specific C 19::aa14 probability G 2::::::4 matrix T 11aa::91 bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ****** Entropy 1.0 ****** (11.6 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTTCCTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:23838004-23838084 39 3.19e-05 ACCCACGATT ACTTCCTG TTCAAGTTCC chr17:57611230-57611310 30 3.19e-05 TGACCCTCGT ACTTCCTC TCTTCCTCTT chr17:56416716-56416796 53 3.19e-05 TTAACCCCCC ACTTCCTG CTAGTGGCCC chr16:78462229-78462309 44 3.19e-05 CACCCTTGCC ACTTCCTG GAGGACTGTC chr1:235460176-235460256 10 3.19e-05 ggagAGAGt acttcctg tatctaaata chr12:3206742-3206822 34 3.19e-05 CTCTTCTGTG ACTTCCTG GAGGAGGGGT chr8:130249987-130250067 35 3.19e-05 gactcatcca acttcctc tcttctgtga chr10:5529631-5529711 56 3.19e-05 CCTCAGTGCC ACTTCCTG GAAGTCTGTC chr19:35453455-35453535 6 3.19e-05 ttttt acttcctg gattgtcagt chrX:2547642-2547722 58 3.19e-05 ACATTGCAAC ACTTCCTG GTTCATTCTG chr2:47406602-47406682 11 3.19e-05 GTGAGAATGT ACTTCCTC TCCACACCTC chr1:113162869-113162949 62 3.19e-05 AGGGCGAGTC ACTTCCTG GTCAGGATGG chr4:38320918-38320998 26 3.19e-05 CATTTCTGTT ACTTCCTG TTTGTGACCG chr2:179542427-179542507 61 3.19e-05 TTCAGGTAGA ACTTCCTC TTCTTCAGGT chr2:121010821-121010901 38 3.19e-05 CTCTGCTTCC ACTTCCTG CCGCGGGCCT chr7:157283417-157283497 51 3.19e-05 cctcaccaat acttcctg ttatctgact chr14:55368925-55369005 34 3.19e-05 AACTCCGGAA ACTTCCTG GAGCCGGCGC chr7:100485365-100485445 44 3.19e-05 TTTTTTAACA ACTTCCTC ACTGATGCTA chr6:135628050-135628130 46 3.19e-05 TGGGTTACCC ACTTCCTC TTTTGGGACT chr19:42387215-42387295 37 3.19e-05 AAACGCCCCG ACTTCCTG CCCCGCCAGA chr15:81292164-81292244 40 3.19e-05 TGTTTTAACC ACTTCCTG AAGAACAAgg chr12:11951947-11952027 42 3.19e-05 GATCTTGGGA ACTTCCTG TGGAGGAGTG chr3:99564352-99564432 22 3.19e-05 TTCCAGTGTC ACTTCCTC TTTCCTTCCT chr5:10787133-10787213 42 3.19e-05 CTGGCTTCCC ACTTCCTG CTTCCTGCTT chr1:51899433-51899513 44 3.19e-05 TGTGGCTTTA ACTTCCTG ATGTTCTTGC chr7:106505683-106505763 49 3.19e-05 TAACTGCAAC ACTTCCTC TGCATCTGGA chr1:231113233-231113313 29 3.19e-05 AGTGAGTGAC ACTTCCTC AAGGAAGTCA chr10:32266438-32266518 53 3.19e-05 ACAACCACCA ACTTCCTG TATTTCTAAC chr17:79283169-79283249 38 3.19e-05 CCAGGAGGAA ACTTCCTC TGAATCTTCC chr19:18429159-18429239 22 3.19e-05 GCCCAAGCCC ACTTCCTG CACCGGCTTC chr10:12824613-12824693 46 3.19e-05 GCTTCGTCCC ACTTCCTG GTGGAAGTTC chr9:134391496-134391576 68 3.19e-05 CACACGGAGC ACTTCCTC TAACA chr1:40525284-40525364 45 3.19e-05 TAACACAAGA ACTTCCTG CTTGTGCAAT chr6:143419312-143419392 1 3.19e-05 . acttcctc ttcctccatt chr11:12111727-12111807 61 3.19e-05 ATCCAAAACC ACTTCCTG CTTCAAAGAG chr4:185276470-185276550 43 3.19e-05 AGTGGACAGG ACTTCCTG GTGACTCTGG chr10:25201321-25201401 23 3.19e-05 ttcctatctg acttcctg gttataggca chr1:42149843-42149923 28 3.19e-05 CACCACTCTG ACTTCCTG GAGGTGACTC chr22:30831858-30831938 17 3.19e-05 CTGCTGGTGC ACTTCCTG GCTCTGCTGG chr13:80022737-80022817 28 3.19e-05 GCTTTTCCTC ACTTCCTG TTTATGACCT chr19:34761007-34761087 12 3.19e-05 TGCTTTGTGA ACTTCCTC CCCCACTTCC chr6:137546185-137546265 4 3.19e-05 CAT ACTTCCTC TTTCAGTGCA chr2:64447545-64447625 54 3.19e-05 TCTGATTGGA ACTTCCTC TTCCTCATTT chr2:69097511-69097591 49 3.19e-05 GGCCATCTAC ACTTCCTG GAAACTGTAA chr5:544277-544357 72 3.19e-05 TTCCACTTCC ACTTCCTG T chr17:39723795-39723875 54 3.19e-05 agctgcctcc acttcctc ccctggaccc chr11:75051875-75051955 22 3.19e-05 ATCTCTCCCC ACTTCCTC CTAGAGAATC chr2:47714468-47714548 23 3.19e-05 TAGAGCTACT ACTTCCTC TTATACTGCT chr4:139228661-139228741 49 3.19e-05 agacggactt acttcctc tttgccttct chr3:138989655-138989735 69 3.19e-05 gaagctacct acttcctc ttcc chr2:219543987-219544067 38 3.19e-05 ACTTCCCAGT ACTTCCTC TAAACTACTT chr15:41199277-41199357 7 3.19e-05 CCCCCA ACTTCCTC CCTCCACTTC chr5:78056390-78056470 16 3.19e-05 aaaaagagca acttcctc ctttatggca chr16:5610282-5610362 28 3.19e-05 GCACTTAGTC ACTTCCTC CAGGAAGCAC chr5:10705162-10705242 14 3.19e-05 tggaaacact acttcctg tatcctcctc chr16:81503640-81503720 60 3.19e-05 AGAACAAACC ACTTCCTC TACAACCTTC chr6:15087022-15087102 10 3.19e-05 cctggtgtt acttcctc tactatctat chr1:21501963-21502043 30 3.19e-05 ATGTCGGTGA ACTTCCTC TTCCTTTAAA chr2:9195768-9195848 55 3.19e-05 cttcctttct acttcctg tgtgacttac chr1:153917706-153917786 49 3.19e-05 AAGGGAGGTT ACTTCCTG AAACAGTGGA chr4:89530713-89530793 54 3.19e-05 aaaggagTAG ACTTCCTG TTCTAATCAG chr8:13082135-13082215 51 4.78e-05 TTGAGGAGCT ACTTCCTT CTAAACAATA chr19:55538850-55538930 6 4.78e-05 CTCCC ACTTCCTT CCCACTTATG chr3:15381551-15381631 53 4.78e-05 cacagccctc acttcctt atccatggct chr1:160635448-160635528 38 4.78e-05 TGGCCTGGCC ACTTCCTT CCTGTCCTCC chr10:129861491-12986157 26 4.78e-05 TGTTCTTACC ACTTCCTT TTCCTACTTC chr10:104153805-10415388 57 4.78e-05 CGCAAGAATA ACTTCCTT CCTCTTCCGC chr17:75338571-75338651 22 4.78e-05 tatcttcatt acttcctT CCTTGTACTT chr3:171046633-171046713 68 4.78e-05 GGAGAtggcc acttcctt cttcc chr4:184317699-184317779 32 4.78e-05 GACACTTCCC ACTTCCTT CCTGTTTCTG chr19:55538271-55538351 45 4.78e-05 CTGCCCTCCC ACTTCCTT CCCACCTCTG chr1:213005282-213005362 70 4.78e-05 tcggacattt acttcctt ttt chr1:173657678-173657758 40 8.06e-05 tctctctgcc gcttcctc tctctctctc chr14:91668863-91668943 57 8.06e-05 TTGGCTTCCA GCTTCCTG TTGGCTTCCA chr9:101820338-101820418 54 8.06e-05 gcagtttcac gcttcctc accacaaacc chr6:45463695-45463775 50 8.06e-05 CCTCCCCACA GCTTCCTG GGGAAGTTGC chr19:55538650-55538730 29 8.06e-05 GCAGCCCAGG GCTTCCTG CCCTCCCACT chr3:154745038-154745118 4 8.06e-05 AAT GCTTCCTG TCTCTCTCTT chr10:103454660-10345474 41 8.06e-05 cttccgcccc gcttcctc ttccgccttg chr22:37309562-37309642 44 8.06e-05 GGCCGGCACT GCTTCCTC TTTCTGCTTC chr4:73419411-73419491 13 8.06e-05 TCCTCATTCT GCTTCCTG GAAATGAGTC chr11:13112059-13112139 34 8.06e-05 acctgctgtg gcttcctg gaactccctc chr10:70975362-70975442 24 8.06e-05 acttccgtga gcttcctg tcttccagaa chr5:108992666-108992746 72 8.06e-05 ATGACTGGCA GCTTCCTG G chr19:55553355-55553435 13 8.06e-05 AGCCCAGAAC GCTTCCTG GAGATAGCGA chr5:141888319-141888399 63 8.06e-05 CTCTTCCTCT GCTTCCTC TCTTCTTGTA chr7:100273532-100273612 36 8.06e-05 TTTCCCCTGC GCTTCCTC TTGCACTTCC chr10:104561895-10456197 1 1.14e-04 . ccttcctC tttttgtgtg chr12:47754626-47754706 54 1.14e-04 AGGGGAGGTT CCTTCCTG GAGATGTTTT chr11:10603265-10603345 18 1.14e-04 CTATGTAGTT CCTTCCTG TGGCAAGGAG chr14:20958863-20958943 4 1.14e-04 CTT CCTTCCTG CTGAGCTAAT chr14:74210316-74210396 18 1.14e-04 ATCAAACTGC CCTTCCTC ACAGTGAGGA chr15:91590904-91590984 45 1.14e-04 tcccccttca ccttcctc ctccctcctc chr20:61317622-61317702 14 1.14e-04 TGGAAACGAG CCTTCCTC CCCCCAGCTG chr17:70974298-70974378 62 1.14e-04 ttccttcctt ccttcctc tttcccttct chr16:87814447-87814527 15 1.14e-04 CCTGTGTCTG CCTTCCTC CCTCCACCCA chr18:45526333-45526413 9 1.14e-04 ggttcctc ccttcctc ccttccATGT chr12:51019913-51019993 17 1.14e-04 TTTTTCCCTC CCTTCCTC ACCAGGGGAG chr10:6625541-6625621 2 1.45e-04 C ATTTCCTG GAGGGGATGA chr12:51018940-51019020 66 1.45e-04 GTTTCTCTGC ATTTCCTG TTCCTTT chr10:23305685-23305765 12 1.45e-04 ATAAGATTGC ATTTCCTG GAGGTGTATC chr10:81698757-81698837 49 1.45e-04 cagggtttcc atttcctc atctctaaaa chr11:74494731-74494811 58 1.45e-04 TTCACCCACA ATTTCCTC TTTTCGGGTG chr4:190511252-190511332 48 1.45e-04 GCTGGGAGAT ATTTCCTC ACAGCTCCTC chr15:90602841-90602921 11 1.78e-04 AGACTCTCGA ACTTCCCC TGCCCCTCCC chr1:92178761-92178841 55 1.78e-04 actcatttat acttCCCC CTTTGAAAAC chr22:32026471-32026551 8 1.78e-04 CCGCCTC ACTTCCCG TACGCTCTTC chr9:129748244-129748324 52 1.78e-04 TGGTGTAACC ACTTCCCG CAAAGCAAGG chr4:108631175-108631255 32 1.78e-04 ATCTTCTTCT ACTTCCCC TTTCCTTCCT chr19:54272516-54272596 73 1.78e-04 tttcctggtc acttcccc chr5:141703507-141703587 40 2.11e-04 ATTCGCAACC TCTTCCTC CAGCTCCCAC chr16:81517175-81517255 14 2.11e-04 ttcctcttcc tcttcctc ttcctcttcc chr8:67015835-67015915 53 2.11e-04 TTCCCCTTTT TCTTCCTC TCCCCGCTCC chr3:42888796-42888876 73 2.43e-04 AGCATCATTT CCTTCCTT chr2:112813882-112813962 19 2.91e-04 ATTTCTCTAC AGTTCCTG TCACAGTTCC chr6:41907424-41907504 72 2.91e-04 CAGCTGCTCC AGTTCCTC A chr12:50093165-50093245 29 2.91e-04 CACCAAGACC AGTTCCTG TTCTCACCAG chr10:45899648-45899728 62 2.91e-04 ACAATCTTGG AGTTCCTC TTTCTCAGAA chr9:86237823-86237903 21 3.39e-04 CGCGCGCTTC ACTTCCgg gaagaggaaa chr16:20915933-20916013 19 3.39e-04 GAGGCATTAC ACTTCCCT TTTTGGATTC chr9:140388685-140388765 56 3.39e-04 AGTGAGAGTC ACTTCCCT TTCCTCTGCC chr13:74339840-74339920 62 3.39e-04 AATACGCCCT ACTTCCGG CTGCCAGCTT chr4:147432682-147432762 52 3.39e-04 CCCACTGTCT ACTTCCCT GTGTGGAGAT chr17:61524461-61524541 50 3.54e-04 CCCAGCTCAG ACTTCCTA CAAGCTGGGA chr2:103035057-103035137 36 3.54e-04 TCTTCAGAGC ACTTCCTA CTGAAAGAGG chr6:147271560-147271640 59 3.87e-04 GTCAGAGCAA GTTTCCTG GATAGAGCTG chr15:81400334-81400414 7 3.87e-04 acttcc gtttcctc gtctgtgaaa chr15:43398318-43398398 48 4.20e-04 CTTCCGGCCC GCTTCCCG GAAGCAAGCG chr19:46018524-46018604 50 4.20e-04 GGAGAccagt gcttcccc ttcccctgtg chr12:57479994-57480074 24 4.69e-04 CTTCCGCCCA CTTTCCTC CCTTTCCTCG chr10:118997053-11899713 54 4.69e-04 GGACAGCATG CTTTCCTC CATGAGGAAA chr8:142183500-142183580 26 5.03e-04 CTGAAGCCTG CCTTCCCG CTCAGCTCAC chr14:81889913-81889993 50 5.03e-04 TTCTGAGAAT CCTTCCCC TCCCTCTTCC chr15:89560784-89560864 10 5.99e-04 TTCCCTGGC TTTTCCTG GAAGCGGAAG chr10:4375808-4375888 50 5.99e-04 tttctacctc acttccgt ttttctacct chr1:27112805-27112885 8 5.99e-04 TTCCTTG TTTTCCTG TCAGAGCAGA chr5:141062743-141062823 19 5.99e-04 GCCGGCTGTG TTTTCCTG TTTGTATGAG chr15:37404571-37404651 10 5.99e-04 GTATTGTCA TTTTCCTC TTGCTTCATA chr4:186123758-186123838 8 6.32e-04 CCTGCCA TCTTCCCC CACCCCTCCG chr7:97762647-97762727 57 6.80e-04 TTTTATTTGT GGTTCCTC AAGTCTAGAA chr1:206845512-206845592 46 7.30e-04 TCCCTCCCCC GCTTCCCT CCACTCCTAT chr20:56008156-56008236 65 7.30e-04 GCCTGCGGCT GCTTCCGG CTCTCGGG chr11:109940283-10994036 32 7.95e-04 tgtcatttcc ctttcctt ctggaggcag chrX:118149572-118149652 15 8.45e-04 TTCCCCTTCA CCTTCCGG GAAGCGTTCT chr15:55514927-55515007 67 9.40e-04 CACCATCTCT ATTTCCCT CCCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:23838004-23838084 3.2e-05 38_[+1]_34 chr17:57611230-57611310 3.2e-05 29_[+1]_43 chr17:56416716-56416796 3.2e-05 52_[+1]_20 chr16:78462229-78462309 3.2e-05 43_[+1]_29 chr1:235460176-235460256 3.2e-05 9_[+1]_63 chr12:3206742-3206822 3.2e-05 33_[+1]_39 chr8:130249987-130250067 3.2e-05 34_[+1]_38 chr10:5529631-5529711 3.2e-05 55_[+1]_17 chr19:35453455-35453535 3.2e-05 5_[+1]_67 chrX:2547642-2547722 3.2e-05 57_[+1]_15 chr2:47406602-47406682 3.2e-05 10_[+1]_62 chr1:113162869-113162949 3.2e-05 61_[+1]_11 chr4:38320918-38320998 3.2e-05 25_[+1]_47 chr2:179542427-179542507 3.2e-05 60_[+1]_12 chr2:121010821-121010901 3.2e-05 37_[+1]_35 chr7:157283417-157283497 3.2e-05 50_[+1]_22 chr14:55368925-55369005 3.2e-05 33_[+1]_39 chr7:100485365-100485445 3.2e-05 43_[+1]_29 chr6:135628050-135628130 3.2e-05 45_[+1]_27 chr19:42387215-42387295 3.2e-05 36_[+1]_36 chr15:81292164-81292244 3.2e-05 39_[+1]_33 chr12:11951947-11952027 3.2e-05 41_[+1]_31 chr3:99564352-99564432 3.2e-05 21_[+1]_51 chr5:10787133-10787213 3.2e-05 41_[+1]_31 chr1:51899433-51899513 3.2e-05 43_[+1]_29 chr7:106505683-106505763 3.2e-05 48_[+1]_24 chr1:231113233-231113313 3.2e-05 28_[+1]_44 chr10:32266438-32266518 3.2e-05 52_[+1]_20 chr17:79283169-79283249 3.2e-05 37_[+1]_35 chr19:18429159-18429239 3.2e-05 21_[+1]_51 chr10:12824613-12824693 3.2e-05 45_[+1]_27 chr9:134391496-134391576 3.2e-05 67_[+1]_5 chr1:40525284-40525364 3.2e-05 44_[+1]_28 chr6:143419312-143419392 3.2e-05 [+1]_72 chr11:12111727-12111807 3.2e-05 60_[+1]_12 chr4:185276470-185276550 3.2e-05 42_[+1]_30 chr10:25201321-25201401 3.2e-05 22_[+1]_50 chr1:42149843-42149923 3.2e-05 27_[+1]_45 chr22:30831858-30831938 3.2e-05 16_[+1]_56 chr13:80022737-80022817 3.2e-05 27_[+1]_45 chr19:34761007-34761087 3.2e-05 11_[+1]_61 chr6:137546185-137546265 3.2e-05 3_[+1]_69 chr2:64447545-64447625 3.2e-05 53_[+1]_19 chr2:69097511-69097591 3.2e-05 48_[+1]_24 chr5:544277-544357 3.2e-05 71_[+1]_1 chr17:39723795-39723875 3.2e-05 53_[+1]_19 chr11:75051875-75051955 3.2e-05 21_[+1]_51 chr2:47714468-47714548 3.2e-05 22_[+1]_50 chr4:139228661-139228741 3.2e-05 48_[+1]_24 chr3:138989655-138989735 3.2e-05 68_[+1]_4 chr2:219543987-219544067 3.2e-05 37_[+1]_35 chr15:41199277-41199357 3.2e-05 6_[+1]_66 chr5:78056390-78056470 3.2e-05 15_[+1]_57 chr16:5610282-5610362 3.2e-05 27_[+1]_45 chr5:10705162-10705242 3.2e-05 13_[+1]_59 chr16:81503640-81503720 3.2e-05 59_[+1]_13 chr6:15087022-15087102 3.2e-05 9_[+1]_63 chr1:21501963-21502043 3.2e-05 29_[+1]_43 chr2:9195768-9195848 3.2e-05 54_[+1]_18 chr1:153917706-153917786 3.2e-05 48_[+1]_24 chr4:89530713-89530793 3.2e-05 53_[+1]_19 chr8:13082135-13082215 4.8e-05 50_[+1]_22 chr19:55538850-55538930 4.8e-05 5_[+1]_67 chr3:15381551-15381631 4.8e-05 52_[+1]_20 chr1:160635448-160635528 4.8e-05 37_[+1]_35 chr10:129861491-12986157 4.8e-05 25_[+1]_47 chr10:104153805-10415388 4.8e-05 56_[+1]_16 chr17:75338571-75338651 4.8e-05 21_[+1]_51 chr3:171046633-171046713 4.8e-05 67_[+1]_5 chr4:184317699-184317779 4.8e-05 31_[+1]_41 chr19:55538271-55538351 4.8e-05 44_[+1]_28 chr1:213005282-213005362 4.8e-05 69_[+1]_3 chr1:173657678-173657758 8.1e-05 39_[+1]_33 chr14:91668863-91668943 8.1e-05 56_[+1]_16 chr9:101820338-101820418 8.1e-05 53_[+1]_19 chr6:45463695-45463775 8.1e-05 49_[+1]_23 chr19:55538650-55538730 8.1e-05 28_[+1]_44 chr3:154745038-154745118 8.1e-05 3_[+1]_69 chr10:103454660-10345474 8.1e-05 40_[+1]_32 chr22:37309562-37309642 8.1e-05 43_[+1]_29 chr4:73419411-73419491 8.1e-05 12_[+1]_60 chr11:13112059-13112139 8.1e-05 33_[+1]_39 chr10:70975362-70975442 8.1e-05 23_[+1]_49 chr5:108992666-108992746 8.1e-05 71_[+1]_1 chr19:55553355-55553435 8.1e-05 12_[+1]_60 chr5:141888319-141888399 8.1e-05 62_[+1]_10 chr7:100273532-100273612 8.1e-05 35_[+1]_37 chr10:104561895-10456197 0.00011 [+1]_72 chr12:47754626-47754706 0.00011 53_[+1]_19 chr11:10603265-10603345 0.00011 17_[+1]_55 chr14:20958863-20958943 0.00011 3_[+1]_69 chr14:74210316-74210396 0.00011 17_[+1]_55 chr15:91590904-91590984 0.00011 44_[+1]_28 chr20:61317622-61317702 0.00011 13_[+1]_59 chr17:70974298-70974378 0.00011 61_[+1]_11 chr16:87814447-87814527 0.00011 14_[+1]_58 chr18:45526333-45526413 0.00011 8_[+1]_64 chr12:51019913-51019993 0.00011 16_[+1]_56 chr10:6625541-6625621 0.00015 1_[+1]_71 chr12:51018940-51019020 0.00015 65_[+1]_7 chr10:23305685-23305765 0.00015 11_[+1]_61 chr10:81698757-81698837 0.00015 48_[+1]_24 chr11:74494731-74494811 0.00015 57_[+1]_15 chr4:190511252-190511332 0.00015 47_[+1]_25 chr15:90602841-90602921 0.00018 10_[+1]_62 chr1:92178761-92178841 0.00018 54_[+1]_18 chr22:32026471-32026551 0.00018 7_[+1]_65 chr9:129748244-129748324 0.00018 51_[+1]_21 chr4:108631175-108631255 0.00018 31_[+1]_41 chr19:54272516-54272596 0.00018 72_[+1] chr5:141703507-141703587 0.00021 39_[+1]_33 chr16:81517175-81517255 0.00021 13_[+1]_59 chr8:67015835-67015915 0.00021 52_[+1]_20 chr3:42888796-42888876 0.00024 72_[+1] chr2:112813882-112813962 0.00029 18_[+1]_54 chr6:41907424-41907504 0.00029 71_[+1]_1 chr12:50093165-50093245 0.00029 28_[+1]_44 chr10:45899648-45899728 0.00029 61_[+1]_11 chr9:86237823-86237903 0.00034 20_[+1]_52 chr16:20915933-20916013 0.00034 18_[+1]_54 chr9:140388685-140388765 0.00034 55_[+1]_17 chr13:74339840-74339920 0.00034 61_[+1]_11 chr4:147432682-147432762 0.00034 51_[+1]_21 chr17:61524461-61524541 0.00035 49_[+1]_23 chr2:103035057-103035137 0.00035 35_[+1]_37 chr6:147271560-147271640 0.00039 58_[+1]_14 chr15:81400334-81400414 0.00039 6_[+1]_66 chr15:43398318-43398398 0.00042 47_[+1]_25 chr19:46018524-46018604 0.00042 49_[+1]_23 chr12:57479994-57480074 0.00047 23_[+1]_49 chr10:118997053-11899713 0.00047 53_[+1]_19 chr8:142183500-142183580 0.0005 25_[+1]_47 chr14:81889913-81889993 0.0005 49_[+1]_23 chr15:89560784-89560864 0.0006 9_[+1]_63 chr10:4375808-4375888 0.0006 49_[+1]_23 chr1:27112805-27112885 0.0006 7_[+1]_65 chr5:141062743-141062823 0.0006 18_[+1]_54 chr15:37404571-37404651 0.0006 9_[+1]_63 chr4:186123758-186123838 0.00063 7_[+1]_65 chr7:97762647-97762727 0.00068 56_[+1]_16 chr1:206845512-206845592 0.00073 45_[+1]_27 chr20:56008156-56008236 0.00073 64_[+1]_8 chr11:109940283-10994036 0.00079 31_[+1]_41 chrX:118149572-118149652 0.00084 14_[+1]_58 chr15:55514927-55515007 0.00094 66_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTTCCTS width=8 seqs=145 chr16:23838004-23838084 ( 39) ACTTCCTG 1 chr17:57611230-57611310 ( 30) ACTTCCTC 1 chr17:56416716-56416796 ( 53) ACTTCCTG 1 chr16:78462229-78462309 ( 44) ACTTCCTG 1 chr1:235460176-235460256 ( 10) ACTTCCTG 1 chr12:3206742-3206822 ( 34) ACTTCCTG 1 chr8:130249987-130250067 ( 35) ACTTCCTC 1 chr10:5529631-5529711 ( 56) ACTTCCTG 1 chr19:35453455-35453535 ( 6) ACTTCCTG 1 chrX:2547642-2547722 ( 58) ACTTCCTG 1 chr2:47406602-47406682 ( 11) ACTTCCTC 1 chr1:113162869-113162949 ( 62) ACTTCCTG 1 chr4:38320918-38320998 ( 26) ACTTCCTG 1 chr2:179542427-179542507 ( 61) ACTTCCTC 1 chr2:121010821-121010901 ( 38) ACTTCCTG 1 chr7:157283417-157283497 ( 51) ACTTCCTG 1 chr14:55368925-55369005 ( 34) ACTTCCTG 1 chr7:100485365-100485445 ( 44) ACTTCCTC 1 chr6:135628050-135628130 ( 46) ACTTCCTC 1 chr19:42387215-42387295 ( 37) ACTTCCTG 1 chr15:81292164-81292244 ( 40) ACTTCCTG 1 chr12:11951947-11952027 ( 42) ACTTCCTG 1 chr3:99564352-99564432 ( 22) ACTTCCTC 1 chr5:10787133-10787213 ( 42) ACTTCCTG 1 chr1:51899433-51899513 ( 44) ACTTCCTG 1 chr7:106505683-106505763 ( 49) ACTTCCTC 1 chr1:231113233-231113313 ( 29) ACTTCCTC 1 chr10:32266438-32266518 ( 53) ACTTCCTG 1 chr17:79283169-79283249 ( 38) ACTTCCTC 1 chr19:18429159-18429239 ( 22) ACTTCCTG 1 chr10:12824613-12824693 ( 46) ACTTCCTG 1 chr9:134391496-134391576 ( 68) ACTTCCTC 1 chr1:40525284-40525364 ( 45) ACTTCCTG 1 chr6:143419312-143419392 ( 1) ACTTCCTC 1 chr11:12111727-12111807 ( 61) ACTTCCTG 1 chr4:185276470-185276550 ( 43) ACTTCCTG 1 chr10:25201321-25201401 ( 23) ACTTCCTG 1 chr1:42149843-42149923 ( 28) ACTTCCTG 1 chr22:30831858-30831938 ( 17) ACTTCCTG 1 chr13:80022737-80022817 ( 28) ACTTCCTG 1 chr19:34761007-34761087 ( 12) ACTTCCTC 1 chr6:137546185-137546265 ( 4) ACTTCCTC 1 chr2:64447545-64447625 ( 54) ACTTCCTC 1 chr2:69097511-69097591 ( 49) ACTTCCTG 1 chr5:544277-544357 ( 72) ACTTCCTG 1 chr17:39723795-39723875 ( 54) ACTTCCTC 1 chr11:75051875-75051955 ( 22) ACTTCCTC 1 chr2:47714468-47714548 ( 23) ACTTCCTC 1 chr4:139228661-139228741 ( 49) ACTTCCTC 1 chr3:138989655-138989735 ( 69) ACTTCCTC 1 chr2:219543987-219544067 ( 38) ACTTCCTC 1 chr15:41199277-41199357 ( 7) ACTTCCTC 1 chr5:78056390-78056470 ( 16) ACTTCCTC 1 chr16:5610282-5610362 ( 28) ACTTCCTC 1 chr5:10705162-10705242 ( 14) ACTTCCTG 1 chr16:81503640-81503720 ( 60) ACTTCCTC 1 chr6:15087022-15087102 ( 10) ACTTCCTC 1 chr1:21501963-21502043 ( 30) ACTTCCTC 1 chr2:9195768-9195848 ( 55) ACTTCCTG 1 chr1:153917706-153917786 ( 49) ACTTCCTG 1 chr4:89530713-89530793 ( 54) ACTTCCTG 1 chr8:13082135-13082215 ( 51) ACTTCCTT 1 chr19:55538850-55538930 ( 6) ACTTCCTT 1 chr3:15381551-15381631 ( 53) ACTTCCTT 1 chr1:160635448-160635528 ( 38) ACTTCCTT 1 chr10:129861491-12986157 ( 26) ACTTCCTT 1 chr10:104153805-10415388 ( 57) ACTTCCTT 1 chr17:75338571-75338651 ( 22) ACTTCCTT 1 chr3:171046633-171046713 ( 68) ACTTCCTT 1 chr4:184317699-184317779 ( 32) ACTTCCTT 1 chr19:55538271-55538351 ( 45) ACTTCCTT 1 chr1:213005282-213005362 ( 70) ACTTCCTT 1 chr1:173657678-173657758 ( 40) GCTTCCTC 1 chr14:91668863-91668943 ( 57) GCTTCCTG 1 chr9:101820338-101820418 ( 54) GCTTCCTC 1 chr6:45463695-45463775 ( 50) GCTTCCTG 1 chr19:55538650-55538730 ( 29) GCTTCCTG 1 chr3:154745038-154745118 ( 4) GCTTCCTG 1 chr10:103454660-10345474 ( 41) GCTTCCTC 1 chr22:37309562-37309642 ( 44) GCTTCCTC 1 chr4:73419411-73419491 ( 13) GCTTCCTG 1 chr11:13112059-13112139 ( 34) GCTTCCTG 1 chr10:70975362-70975442 ( 24) GCTTCCTG 1 chr5:108992666-108992746 ( 72) GCTTCCTG 1 chr19:55553355-55553435 ( 13) GCTTCCTG 1 chr5:141888319-141888399 ( 63) GCTTCCTC 1 chr7:100273532-100273612 ( 36) GCTTCCTC 1 chr10:104561895-10456197 ( 1) CCTTCCTC 1 chr12:47754626-47754706 ( 54) CCTTCCTG 1 chr11:10603265-10603345 ( 18) CCTTCCTG 1 chr14:20958863-20958943 ( 4) CCTTCCTG 1 chr14:74210316-74210396 ( 18) CCTTCCTC 1 chr15:91590904-91590984 ( 45) CCTTCCTC 1 chr20:61317622-61317702 ( 14) CCTTCCTC 1 chr17:70974298-70974378 ( 62) CCTTCCTC 1 chr16:87814447-87814527 ( 15) CCTTCCTC 1 chr18:45526333-45526413 ( 9) CCTTCCTC 1 chr12:51019913-51019993 ( 17) CCTTCCTC 1 chr10:6625541-6625621 ( 2) ATTTCCTG 1 chr12:51018940-51019020 ( 66) ATTTCCTG 1 chr10:23305685-23305765 ( 12) ATTTCCTG 1 chr10:81698757-81698837 ( 49) ATTTCCTC 1 chr11:74494731-74494811 ( 58) ATTTCCTC 1 chr4:190511252-190511332 ( 48) ATTTCCTC 1 chr15:90602841-90602921 ( 11) ACTTCCCC 1 chr1:92178761-92178841 ( 55) ACTTCCCC 1 chr22:32026471-32026551 ( 8) ACTTCCCG 1 chr9:129748244-129748324 ( 52) ACTTCCCG 1 chr4:108631175-108631255 ( 32) ACTTCCCC 1 chr19:54272516-54272596 ( 73) ACTTCCCC 1 chr5:141703507-141703587 ( 40) TCTTCCTC 1 chr16:81517175-81517255 ( 14) TCTTCCTC 1 chr8:67015835-67015915 ( 53) TCTTCCTC 1 chr3:42888796-42888876 ( 73) CCTTCCTT 1 chr2:112813882-112813962 ( 19) AGTTCCTG 1 chr6:41907424-41907504 ( 72) AGTTCCTC 1 chr12:50093165-50093245 ( 29) AGTTCCTG 1 chr10:45899648-45899728 ( 62) AGTTCCTC 1 chr9:86237823-86237903 ( 21) ACTTCCGG 1 chr16:20915933-20916013 ( 19) ACTTCCCT 1 chr9:140388685-140388765 ( 56) ACTTCCCT 1 chr13:74339840-74339920 ( 62) ACTTCCGG 1 chr4:147432682-147432762 ( 52) ACTTCCCT 1 chr17:61524461-61524541 ( 50) ACTTCCTA 1 chr2:103035057-103035137 ( 36) ACTTCCTA 1 chr6:147271560-147271640 ( 59) GTTTCCTG 1 chr15:81400334-81400414 ( 7) GTTTCCTC 1 chr15:43398318-43398398 ( 48) GCTTCCCG 1 chr19:46018524-46018604 ( 50) GCTTCCCC 1 chr12:57479994-57480074 ( 24) CTTTCCTC 1 chr10:118997053-11899713 ( 54) CTTTCCTC 1 chr8:142183500-142183580 ( 26) CCTTCCCG 1 chr14:81889913-81889993 ( 50) CCTTCCCC 1 chr15:89560784-89560864 ( 10) TTTTCCTG 1 chr10:4375808-4375888 ( 50) ACTTCCGT 1 chr1:27112805-27112885 ( 8) TTTTCCTG 1 chr5:141062743-141062823 ( 19) TTTTCCTG 1 chr15:37404571-37404651 ( 10) TTTTCCTC 1 chr4:186123758-186123838 ( 8) TCTTCCCC 1 chr7:97762647-97762727 ( 57) GGTTCCTC 1 chr1:206845512-206845592 ( 46) GCTTCCCT 1 chr20:56008156-56008236 ( 65) GCTTCCGG 1 chr11:109940283-10994036 ( 32) CTTTCCTT 1 chrX:118149572-118149652 ( 15) CCTTCCGG 1 chr15:55514927-55515007 ( 67) ATTTCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.38046 E= 1.4e-140 146 -103 -73 -218 -1382 175 -287 -118 -1382 -1382 -1382 200 -1382 -1382 -1382 200 -1382 198 -1382 -1382 -1382 198 -1382 -1382 -1382 -120 -287 177 -414 73 79 -94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 145 E= 1.4e-140 0.668966 0.124138 0.151724 0.055172 0.000000 0.855172 0.034483 0.110345 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.110345 0.034483 0.855172 0.013793 0.420690 0.434483 0.131034 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTS MEME-1 regular expression -------------------------------------------------------------------------------- ACTTCCT[GC] -------------------------------------------------------------------------------- Time 4.79 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAAGTR MEME-2 width = 8 sites = 117 llr = 931 E-value = 2.0e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8::aa223 pos.-specific C ::::::11 probability G 2aa::815 matrix T ::::::61 bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ****** Entropy 1.0 ****** (11.5 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAAGTG consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:90732332-90732412 42 1.45e-05 aaggaaaagg aggaagtg agcgagggca chr1:183962404-183962484 29 1.45e-05 CTTATCTAAG AGGAAGTG GGGAATGCAA chr12:131239134-13123921 39 1.45e-05 gtgaatgaac aggaagtg aggcaggagc chr14:81882684-81882764 1 1.45e-05 . AGGAAGTG AAAGTGCAAA chr7:67383321-67383401 71 1.45e-05 ATTCTGAAAC AGGAAGTG AG chrX:153946257-153946337 48 1.45e-05 GTGTGACAGC AGGAAGTG TGGGGTTCTG chr2:16806630-16806710 48 1.45e-05 AAGAAAAAAC AGGAAGTG AAGTGGGGGA chr7:100485365-100485445 11 1.45e-05 GAGAAAATTG AGGAAGTG AAAAAGGAAG chr3:42888796-42888876 41 1.45e-05 GCACAGAAAG AGGAAGTG GAAGAGGTGA chr2:149400811-149400891 47 1.45e-05 gggggagggg aggaagtg gaggagggga chr1:198526194-198526274 15 1.45e-05 CTTAAGAAAA AGGAAGTG CAGAAGTGAG chr8:29387484-29387564 24 1.45e-05 CCTAAGCCAG AGGAAGTG CTTGAGGAAG chr22:32026471-32026551 64 1.45e-05 TAAGATGTGG AGGAAGTG AGCTCACGC chr17:61524461-61524541 14 1.45e-05 CCCCCGGTCC AGGAAGTG CTGTGGGTAG chr9:126597543-126597623 23 1.45e-05 AATAACGAAG AGGAAGTG GTCAGGGTAG chr1:42149843-42149923 67 1.45e-05 CAGCAGAGGA AGGAAGTG GGAAAG chr10:15367767-15367847 8 1.45e-05 TTGGACC AGGAAGTG AATGACGGGA chr17:15340198-15340278 68 1.45e-05 aggaggaagt aggaagtg gcccc chr4:84540255-84540335 28 1.45e-05 TAACCACAAG AGGAAGTG GCGAGGCCCT chr2:178104912-178104992 70 1.45e-05 CAGGGCTTTG AGGAAGTG CAA chr3:43431318-43431398 34 1.45e-05 CCGGGCTGGG AGGAAGTG ATGGCTGACC chr19:8791736-8791816 21 1.45e-05 TGAGTCAGTG AGGAAGTG GCCAGGAATA chr15:41199277-41199357 45 1.45e-05 CTGTGTGAAC AGGAAGTG GAGAGGAAAA chr16:89683226-89683306 44 1.45e-05 ggaagcaggc aggaagtg ggcaggaagc chr11:109940283-10994036 48 1.45e-05 ttctggaggc aggaagtg gctctgggcc chr1:203258745-203258825 1 2.85e-05 . AGGAAGTA GACCTTAGAT chr3:151589556-151589636 22 2.85e-05 CGGAGGAAAC AGGAAGTA GGACTTGGGA chr20:21603853-21603933 65 2.85e-05 gctcaggaac aggaagta ttcaggag chr4:153320570-153320650 69 2.85e-05 agacaagaaa aggaagta aaag chr11:35080773-35080853 57 2.85e-05 ggaaacagga aggaagta aattgggtag chr15:37404571-37404651 30 2.85e-05 GCTTCATACC AGGAAGTA GTTTTGCAAC chr6:25006922-25007002 66 2.85e-05 CATTTGGAAT AGGAAGTA AGACTGA chr7:5733220-5733300 46 2.85e-05 CTCTTTTTAG AGGAAGTA AGAAGGGAAC chr2:122369472-122369552 43 4.26e-05 TTGTTACAGG AGGAAGAG GAACTGGAGA chr12:11951947-11952027 25 4.26e-05 TTTCCTGTTC AGGAAGAG ATCTTGGGAA chr3:154745038-154745118 60 4.26e-05 CACAACCATA AGGAAGAG CTCTCTAAAA chr14:74210316-74210396 32 4.26e-05 CCTCACAGTG AGGAAGAG GAAGGACGAC chr16:55786864-55786944 24 4.26e-05 TTTGCAAAAA AGGAAGAG AGCCCTCACC chr1:246187547-246187627 62 4.26e-05 GACAGCATCT AGGAAGAG AGATACAGGA chr2:122368119-122368199 67 4.26e-05 gagttgcagg aggaagag gaactg chr1:154358165-154358245 16 4.26e-05 GTGGAGCTCC AGGAAGAG GATGGGGCGT chr5:10445619-10445699 21 4.26e-05 AGAGGATTCC AGGAAGAG GAAGCAGCAC chr16:55787135-55787215 11 5.67e-05 aggcctcacc aggaaatg agtcagcTTA chr12:93362384-93362464 25 5.67e-05 gaaggaaggg aggAAATG AATCAGCATG chr3:33049900-33049980 22 5.67e-05 ACCACTGGGC AGGAAATG AGGTTGGAGG chr1:243428197-243428277 5 5.67e-05 GAAG AGGAAATG AGTGTGTTCT chr20:37433757-37433837 35 5.67e-05 TTCCAGAAAG AGGAAATG ATGCGAGTCC chr6:30477093-30477173 6 5.67e-05 CAACT AGGAAATG TTTTTGTGAC chr19:34761007-34761087 50 5.67e-05 GCAGTTGCAC AGGAAATG AGGCGGCTCC chrX:37614486-37614566 3 5.67e-05 aa aggaaatg gaaaccacaa chr12:51019913-51019993 60 5.67e-05 GAAAGAAAGG AGGAAATG AATCttaatg chr16:57834556-57834636 16 8.52e-05 TTATCAGGAA GGGAAGTG GAGGAGGCAG chr19:55538850-55538930 64 8.52e-05 ATAAAGGCTG AGGAAGAA AGGTTTGGT chr2:103035256-103035336 8 8.52e-05 TCTGGAT AGGAAGAA ATATAGTAGA chr8:11314290-11314370 59 8.52e-05 ggctgggtta gggaagtg ggcagggctg chr3:172230363-172230443 55 8.52e-05 TTACGGGAAG GGGAAGTG AGAGGAAACC chr3:15342024-15342104 2 8.52e-05 G AGGAAGAA AACAGGAAGT chr15:67158538-67158618 6 8.52e-05 TCAAG GGGAAGTG AGACGAGAGG chr2:103511959-103512039 24 8.52e-05 TTCCAGGAAC AGGAAGAA AGGGGAAGTA chr11:12907528-12907608 40 8.52e-05 acttctagga aggaagaa tactgaacgc chrX:153947699-153947779 12 8.52e-05 ggaggcttcc aggaagaa gtggtgacta chr17:7746379-7746459 55 8.52e-05 AGTGGCAGAG GGGAAGTG TCATCATCGC chr1:26158426-26158506 60 8.52e-05 TTTGCTCTAA AGGAAGAA GATATCAGTA chr6:137612766-137612846 2 8.52e-05 T GGGAAGTG GTTTGTGTGG chr16:81503640-81503720 46 8.52e-05 CATGAGCAGG AGGAAGAA CAAACCACTT chr6:147271560-147271640 44 9.99e-05 GACACCAGAC AGGAAGTC AGAGCAAGTT chr5:134817203-134817283 40 9.99e-05 ctggcacgtt AGGAAGTC AAATCTGCAA chr1:231113233-231113313 38 9.99e-05 CACTTCCTCA AGGAAGTC AGACTGTACT chr6:107297603-107297683 26 9.99e-05 TCCTATCTTA AGGAAGTC ACACATCTCA chr6:143419312-143419392 47 9.99e-05 gccccagtga aggaagtc taatcaaggt chr5:139991722-139991802 3 9.99e-05 aa aggaagtc ctacaaccac chr4:48214381-48214461 9 9.99e-05 ACTGTTTA AGGAAGTC CCCCTTTGTG chr6:158430674-158430754 12 9.99e-05 CGTGGGAGAC AGGAAGTC TGTGTATTTC chr3:171046633-171046713 24 9.99e-05 TGGCTGTGGC AGGAAGTC ACTAAGGAAA chr6:15087022-15087102 34 9.99e-05 ctattcatca aggaagtc ccaaaggtcc chr16:20915933-20916013 63 1.14e-04 AATCTGAAAC AGGAAATA AGTCTGTGGT chr10:118997053-11899713 66 1.14e-04 TTCCTCCATG AGGAAATA ACTAGAA chr19:42387215-42387295 58 1.43e-04 CGCCAGAGCC AGGAAGCG GGAGCCGGGA chr9:140610766-140610846 65 1.43e-04 atggtggggg aggaagtt gtgttggt chr5:141062743-141062823 37 1.43e-04 TTTGTATGAG AGGAAGTT GGCTGTGAGT chr17:58475835-58475915 50 1.43e-04 TGTAAGAAAG AGGAAGTT GGCAAGCCCC chr21:34673487-34673567 13 1.57e-04 AAAAACAAAC GGGAAGTA AAAAACAAAG chr3:197482908-197482988 52 1.57e-04 CTGTGATTAC GGGAAGTA GGTAGGAAAT chr3:197482709-197482789 66 1.57e-04 CTGCGATTAT GGGAAGTA GGTAGGA chr5:132109848-132109928 10 1.57e-04 CGCTTCTTG GGGAAGTA TCAAGATTGC chr9:86237823-86237903 56 1.85e-04 gggaggggag aggaaaag aaggggcagg chr12:47754626-47754706 40 1.85e-04 CACAGCAGGA AGGAAGGG GAGGTTCCTT chr20:61371714-61371794 32 1.85e-04 ACAGGCCGGA AGGAAAAG GGTTGTGGGG chr18:23570604-23570684 51 1.85e-04 ACTGCCTTCC AGGAAGGG CGAGGTATTC chr2:69001940-69002020 61 2.00e-04 CGCAGGAAAA AGGAAGCA CCTTTTGTCA chr5:108992666-108992746 55 2.00e-04 CGCAAACCAC AGGAAGCA TGACTGGCAG chr16:5610282-5610362 13 2.00e-04 cacctcctcc aggAAGCA CTTAGTCACT chr6:41907424-41907504 29 2.14e-04 GGGCTAAGGG GGGAAGAG GGAGCTGTTT chr3:141401058-141401138 64 2.70e-04 agaaagagga aggaagga ggggaggaa chr10:89879994-89880074 68 2.70e-04 gagggggagc aggaagga ggGTG chr19:46018524-46018604 9 2.70e-04 CCCATTTC AGGAAAAA GCCTGGTGTG chr2:159077716-159077796 7 2.70e-04 GGTGGG AGGAAGGA GGAAAAGAAC chr11:13112059-13112139 72 2.98e-04 ttctggccta aggaagat a chr19:18429159-18429239 59 3.12e-04 CCAGATAAGG GGGAAGAA AGGGCCATGT chr16:20922214-20922294 46 3.70e-04 TGTACCTCAC AGGAACTG ACTCATGTAT chr2:38893829-38893909 60 3.70e-04 CTTCTGAAGA AGGAAATT CAAATACTTG chr18:830567-830647 21 3.70e-04 GAGGGGAAAA AGGAAACG GGAAACGGAA chr16:23913954-23914034 60 3.70e-04 TAATGCGTTC AGGAACTG AGCTCAAAAG chr20:54994214-54994294 14 3.85e-04 GGGCCTGAAG GGGAAATA GCTTAAAAGG chr4:82329641-82329721 8 3.85e-04 GAGCCCT GGGAAATA GCCACGGTGG chr6:45463695-45463775 58 4.29e-04 CAGCTTCCTG GGGAAGTT GCTTCCTCTA chr1:21501963-21502043 61 4.29e-04 GTCAAAGACA GGGAAGCG TCCGGCGTCA chr10:45899648-45899728 24 4.71e-04 GCTTCCGTTC AGGAAACA CTGAACTTTG chr1:27112805-27112885 42 4.71e-04 AAAATGAAAC AGGAAACA GAGCGGAAGA chr17:75338571-75338651 68 4.71e-04 gggcccagtc aggaaaca aaaac chr1:153917706-153917786 36 5.00e-04 TGCTTCAGAG GGGAAGGG AGGTTACTTC chr19:6892147-6892227 32 5.44e-04 CAGATGAAAG AGGAAGCT GGAAATGAGA chr8:142424982-142425062 41 6.29e-04 CCTGGACTGC AGGAACAG CCCCTCCTCC chr11:3853148-3853228 66 6.57e-04 CAAAGGAGAG GGGAAGGA CAGCGTA chr8:142183500-142183580 72 6.87e-04 GCCTGTGACT CGGAAGTG A chr1:92178761-92178841 18 6.87e-04 ggtagtttag gggaaatc taatctggaa chr11:46340330-46340410 16 7.01e-04 GGTCAGAGGA GGGAAGAT TAAGGAGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:90732332-90732412 1.4e-05 41_[+2]_31 chr1:183962404-183962484 1.4e-05 28_[+2]_44 chr12:131239134-13123921 1.4e-05 38_[+2]_34 chr14:81882684-81882764 1.4e-05 [+2]_72 chr7:67383321-67383401 1.4e-05 70_[+2]_2 chrX:153946257-153946337 1.4e-05 47_[+2]_25 chr2:16806630-16806710 1.4e-05 47_[+2]_25 chr7:100485365-100485445 1.4e-05 10_[+2]_62 chr3:42888796-42888876 1.4e-05 40_[+2]_32 chr2:149400811-149400891 1.4e-05 46_[+2]_26 chr1:198526194-198526274 1.4e-05 14_[+2]_58 chr8:29387484-29387564 1.4e-05 23_[+2]_49 chr22:32026471-32026551 1.4e-05 63_[+2]_9 chr17:61524461-61524541 1.4e-05 13_[+2]_59 chr9:126597543-126597623 1.4e-05 22_[+2]_50 chr1:42149843-42149923 1.4e-05 66_[+2]_6 chr10:15367767-15367847 1.4e-05 7_[+2]_65 chr17:15340198-15340278 1.4e-05 67_[+2]_5 chr4:84540255-84540335 1.4e-05 27_[+2]_45 chr2:178104912-178104992 1.4e-05 69_[+2]_3 chr3:43431318-43431398 1.4e-05 33_[+2]_39 chr19:8791736-8791816 1.4e-05 20_[+2]_52 chr15:41199277-41199357 1.4e-05 44_[+2]_28 chr16:89683226-89683306 1.4e-05 43_[+2]_29 chr11:109940283-10994036 1.4e-05 47_[+2]_25 chr1:203258745-203258825 2.9e-05 [+2]_72 chr3:151589556-151589636 2.9e-05 21_[+2]_51 chr20:21603853-21603933 2.9e-05 64_[+2]_8 chr4:153320570-153320650 2.9e-05 68_[+2]_4 chr11:35080773-35080853 2.9e-05 56_[+2]_16 chr15:37404571-37404651 2.9e-05 29_[+2]_43 chr6:25006922-25007002 2.9e-05 65_[+2]_7 chr7:5733220-5733300 2.9e-05 45_[+2]_27 chr2:122369472-122369552 4.3e-05 42_[+2]_30 chr12:11951947-11952027 4.3e-05 24_[+2]_48 chr3:154745038-154745118 4.3e-05 59_[+2]_13 chr14:74210316-74210396 4.3e-05 31_[+2]_41 chr16:55786864-55786944 4.3e-05 23_[+2]_49 chr1:246187547-246187627 4.3e-05 61_[+2]_11 chr2:122368119-122368199 4.3e-05 66_[+2]_6 chr1:154358165-154358245 4.3e-05 15_[+2]_57 chr5:10445619-10445699 4.3e-05 20_[+2]_52 chr16:55787135-55787215 5.7e-05 10_[+2]_62 chr12:93362384-93362464 5.7e-05 24_[+2]_48 chr3:33049900-33049980 5.7e-05 21_[+2]_51 chr1:243428197-243428277 5.7e-05 4_[+2]_68 chr20:37433757-37433837 5.7e-05 34_[+2]_38 chr6:30477093-30477173 5.7e-05 5_[+2]_67 chr19:34761007-34761087 5.7e-05 49_[+2]_23 chrX:37614486-37614566 5.7e-05 2_[+2]_70 chr12:51019913-51019993 5.7e-05 59_[+2]_13 chr16:57834556-57834636 8.5e-05 15_[+2]_57 chr19:55538850-55538930 8.5e-05 63_[+2]_9 chr2:103035256-103035336 8.5e-05 7_[+2]_65 chr8:11314290-11314370 8.5e-05 58_[+2]_14 chr3:172230363-172230443 8.5e-05 54_[+2]_18 chr3:15342024-15342104 8.5e-05 1_[+2]_71 chr15:67158538-67158618 8.5e-05 5_[+2]_67 chr2:103511959-103512039 8.5e-05 23_[+2]_49 chr11:12907528-12907608 8.5e-05 39_[+2]_33 chrX:153947699-153947779 8.5e-05 11_[+2]_61 chr17:7746379-7746459 8.5e-05 54_[+2]_18 chr1:26158426-26158506 8.5e-05 59_[+2]_13 chr6:137612766-137612846 8.5e-05 1_[+2]_71 chr16:81503640-81503720 8.5e-05 45_[+2]_27 chr6:147271560-147271640 0.0001 43_[+2]_29 chr5:134817203-134817283 0.0001 39_[+2]_33 chr1:231113233-231113313 0.0001 37_[+2]_35 chr6:107297603-107297683 0.0001 25_[+2]_47 chr6:143419312-143419392 0.0001 46_[+2]_26 chr5:139991722-139991802 0.0001 2_[+2]_70 chr4:48214381-48214461 0.0001 8_[+2]_64 chr6:158430674-158430754 0.0001 11_[+2]_61 chr3:171046633-171046713 0.0001 23_[+2]_49 chr6:15087022-15087102 0.0001 33_[+2]_39 chr16:20915933-20916013 0.00011 62_[+2]_10 chr10:118997053-11899713 0.00011 65_[+2]_7 chr19:42387215-42387295 0.00014 57_[+2]_15 chr9:140610766-140610846 0.00014 64_[+2]_8 chr5:141062743-141062823 0.00014 36_[+2]_36 chr17:58475835-58475915 0.00014 49_[+2]_23 chr21:34673487-34673567 0.00016 12_[+2]_60 chr3:197482908-197482988 0.00016 51_[+2]_21 chr3:197482709-197482789 0.00016 65_[+2]_7 chr5:132109848-132109928 0.00016 9_[+2]_63 chr9:86237823-86237903 0.00019 55_[+2]_17 chr12:47754626-47754706 0.00019 39_[+2]_33 chr20:61371714-61371794 0.00019 31_[+2]_41 chr18:23570604-23570684 0.00019 50_[+2]_22 chr2:69001940-69002020 0.0002 60_[+2]_12 chr5:108992666-108992746 0.0002 54_[+2]_18 chr16:5610282-5610362 0.0002 12_[+2]_60 chr6:41907424-41907504 0.00021 28_[+2]_44 chr3:141401058-141401138 0.00027 63_[+2]_9 chr10:89879994-89880074 0.00027 67_[+2]_5 chr19:46018524-46018604 0.00027 8_[+2]_64 chr2:159077716-159077796 0.00027 6_[+2]_66 chr11:13112059-13112139 0.0003 71_[+2]_1 chr19:18429159-18429239 0.00031 58_[+2]_14 chr16:20922214-20922294 0.00037 45_[+2]_27 chr2:38893829-38893909 0.00037 59_[+2]_13 chr18:830567-830647 0.00037 20_[+2]_52 chr16:23913954-23914034 0.00037 59_[+2]_13 chr20:54994214-54994294 0.00038 13_[+2]_59 chr4:82329641-82329721 0.00038 7_[+2]_65 chr6:45463695-45463775 0.00043 57_[+2]_15 chr1:21501963-21502043 0.00043 60_[+2]_12 chr10:45899648-45899728 0.00047 23_[+2]_49 chr1:27112805-27112885 0.00047 41_[+2]_31 chr17:75338571-75338651 0.00047 67_[+2]_5 chr1:153917706-153917786 0.0005 35_[+2]_37 chr19:6892147-6892227 0.00054 31_[+2]_41 chr8:142424982-142425062 0.00063 40_[+2]_32 chr11:3853148-3853228 0.00066 65_[+2]_7 chr8:142183500-142183580 0.00069 71_[+2]_1 chr1:92178761-92178841 0.00069 17_[+2]_55 chr11:46340330-46340410 0.0007 15_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAAGTR width=8 seqs=117 chr15:90732332-90732412 ( 42) AGGAAGTG 1 chr1:183962404-183962484 ( 29) AGGAAGTG 1 chr12:131239134-13123921 ( 39) AGGAAGTG 1 chr14:81882684-81882764 ( 1) AGGAAGTG 1 chr7:67383321-67383401 ( 71) AGGAAGTG 1 chrX:153946257-153946337 ( 48) AGGAAGTG 1 chr2:16806630-16806710 ( 48) AGGAAGTG 1 chr7:100485365-100485445 ( 11) AGGAAGTG 1 chr3:42888796-42888876 ( 41) AGGAAGTG 1 chr2:149400811-149400891 ( 47) AGGAAGTG 1 chr1:198526194-198526274 ( 15) AGGAAGTG 1 chr8:29387484-29387564 ( 24) AGGAAGTG 1 chr22:32026471-32026551 ( 64) AGGAAGTG 1 chr17:61524461-61524541 ( 14) AGGAAGTG 1 chr9:126597543-126597623 ( 23) AGGAAGTG 1 chr1:42149843-42149923 ( 67) AGGAAGTG 1 chr10:15367767-15367847 ( 8) AGGAAGTG 1 chr17:15340198-15340278 ( 68) AGGAAGTG 1 chr4:84540255-84540335 ( 28) AGGAAGTG 1 chr2:178104912-178104992 ( 70) AGGAAGTG 1 chr3:43431318-43431398 ( 34) AGGAAGTG 1 chr19:8791736-8791816 ( 21) AGGAAGTG 1 chr15:41199277-41199357 ( 45) AGGAAGTG 1 chr16:89683226-89683306 ( 44) AGGAAGTG 1 chr11:109940283-10994036 ( 48) AGGAAGTG 1 chr1:203258745-203258825 ( 1) AGGAAGTA 1 chr3:151589556-151589636 ( 22) AGGAAGTA 1 chr20:21603853-21603933 ( 65) AGGAAGTA 1 chr4:153320570-153320650 ( 69) AGGAAGTA 1 chr11:35080773-35080853 ( 57) AGGAAGTA 1 chr15:37404571-37404651 ( 30) AGGAAGTA 1 chr6:25006922-25007002 ( 66) AGGAAGTA 1 chr7:5733220-5733300 ( 46) AGGAAGTA 1 chr2:122369472-122369552 ( 43) AGGAAGAG 1 chr12:11951947-11952027 ( 25) AGGAAGAG 1 chr3:154745038-154745118 ( 60) AGGAAGAG 1 chr14:74210316-74210396 ( 32) AGGAAGAG 1 chr16:55786864-55786944 ( 24) AGGAAGAG 1 chr1:246187547-246187627 ( 62) AGGAAGAG 1 chr2:122368119-122368199 ( 67) AGGAAGAG 1 chr1:154358165-154358245 ( 16) AGGAAGAG 1 chr5:10445619-10445699 ( 21) AGGAAGAG 1 chr16:55787135-55787215 ( 11) AGGAAATG 1 chr12:93362384-93362464 ( 25) AGGAAATG 1 chr3:33049900-33049980 ( 22) AGGAAATG 1 chr1:243428197-243428277 ( 5) AGGAAATG 1 chr20:37433757-37433837 ( 35) AGGAAATG 1 chr6:30477093-30477173 ( 6) AGGAAATG 1 chr19:34761007-34761087 ( 50) AGGAAATG 1 chrX:37614486-37614566 ( 3) AGGAAATG 1 chr12:51019913-51019993 ( 60) AGGAAATG 1 chr16:57834556-57834636 ( 16) GGGAAGTG 1 chr19:55538850-55538930 ( 64) AGGAAGAA 1 chr2:103035256-103035336 ( 8) AGGAAGAA 1 chr8:11314290-11314370 ( 59) GGGAAGTG 1 chr3:172230363-172230443 ( 55) GGGAAGTG 1 chr3:15342024-15342104 ( 2) AGGAAGAA 1 chr15:67158538-67158618 ( 6) GGGAAGTG 1 chr2:103511959-103512039 ( 24) AGGAAGAA 1 chr11:12907528-12907608 ( 40) AGGAAGAA 1 chrX:153947699-153947779 ( 12) AGGAAGAA 1 chr17:7746379-7746459 ( 55) GGGAAGTG 1 chr1:26158426-26158506 ( 60) AGGAAGAA 1 chr6:137612766-137612846 ( 2) GGGAAGTG 1 chr16:81503640-81503720 ( 46) AGGAAGAA 1 chr6:147271560-147271640 ( 44) AGGAAGTC 1 chr5:134817203-134817283 ( 40) AGGAAGTC 1 chr1:231113233-231113313 ( 38) AGGAAGTC 1 chr6:107297603-107297683 ( 26) AGGAAGTC 1 chr6:143419312-143419392 ( 47) AGGAAGTC 1 chr5:139991722-139991802 ( 3) AGGAAGTC 1 chr4:48214381-48214461 ( 9) AGGAAGTC 1 chr6:158430674-158430754 ( 12) AGGAAGTC 1 chr3:171046633-171046713 ( 24) AGGAAGTC 1 chr6:15087022-15087102 ( 34) AGGAAGTC 1 chr16:20915933-20916013 ( 63) AGGAAATA 1 chr10:118997053-11899713 ( 66) AGGAAATA 1 chr19:42387215-42387295 ( 58) AGGAAGCG 1 chr9:140610766-140610846 ( 65) AGGAAGTT 1 chr5:141062743-141062823 ( 37) AGGAAGTT 1 chr17:58475835-58475915 ( 50) AGGAAGTT 1 chr21:34673487-34673567 ( 13) GGGAAGTA 1 chr3:197482908-197482988 ( 52) GGGAAGTA 1 chr3:197482709-197482789 ( 66) GGGAAGTA 1 chr5:132109848-132109928 ( 10) GGGAAGTA 1 chr9:86237823-86237903 ( 56) AGGAAAAG 1 chr12:47754626-47754706 ( 40) AGGAAGGG 1 chr20:61371714-61371794 ( 32) AGGAAAAG 1 chr18:23570604-23570684 ( 51) AGGAAGGG 1 chr2:69001940-69002020 ( 61) AGGAAGCA 1 chr5:108992666-108992746 ( 55) AGGAAGCA 1 chr16:5610282-5610362 ( 13) AGGAAGCA 1 chr6:41907424-41907504 ( 29) GGGAAGAG 1 chr3:141401058-141401138 ( 64) AGGAAGGA 1 chr10:89879994-89880074 ( 68) AGGAAGGA 1 chr19:46018524-46018604 ( 9) AGGAAAAA 1 chr2:159077716-159077796 ( 7) AGGAAGGA 1 chr11:13112059-13112139 ( 72) AGGAAGAT 1 chr19:18429159-18429239 ( 59) GGGAAGAA 1 chr16:20922214-20922294 ( 46) AGGAACTG 1 chr2:38893829-38893909 ( 60) AGGAAATT 1 chr18:830567-830647 ( 21) AGGAAACG 1 chr16:23913954-23914034 ( 60) AGGAACTG 1 chr20:54994214-54994294 ( 14) GGGAAATA 1 chr4:82329641-82329721 ( 8) GGGAAATA 1 chr6:45463695-45463775 ( 58) GGGAAGTT 1 chr1:21501963-21502043 ( 61) GGGAAGCG 1 chr10:45899648-45899728 ( 24) AGGAAACA 1 chr1:27112805-27112885 ( 42) AGGAAACA 1 chr17:75338571-75338651 ( 68) AGGAAACA 1 chr1:153917706-153917786 ( 36) GGGAAGGG 1 chr19:6892147-6892227 ( 32) AGGAAGCT 1 chr8:142424982-142425062 ( 41) AGGAACAG 1 chr11:3853148-3853228 ( 66) GGGAAGGA 1 chr8:142183500-142183580 ( 72) CGGAAGTG 1 chr1:92178761-92178841 ( 18) GGGAAATC 1 chr11:46340330-46340410 ( 16) GGGAAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.53702 E= 2.0e-091 175 -489 -56 -1351 -1351 -1351 199 -1351 -1351 -1351 199 -1351 204 -1351 -1351 -1351 204 -1351 -1351 -1351 -37 -331 164 -1351 -19 -157 -207 135 34 -143 108 -187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 2.0e-091 0.820513 0.008547 0.170940 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.188034 0.025641 0.786325 0.000000 0.213675 0.085470 0.059829 0.641026 0.307692 0.094017 0.529915 0.068376 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAGTR MEME-2 regular expression -------------------------------------------------------------------------------- AGGAAG[TA][GA] -------------------------------------------------------------------------------- Time 8.28 secs. ******************************************************************************** ******************************************************************************** MOTIF RRGAGGAA MEME-3 width = 8 sites = 62 llr = 507 E-value = 6.8e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 661a::a8 pos.-specific C 1:2::::: probability G 346:aa:2 matrix T :::::::: bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ***** Entropy 1.0 * ***** (11.8 bits) 0.8 * ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGAGGAA consensus GGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:57834556-57834636 54 1.37e-05 ATCGGGAAGA AAGAGGAA GGGCGTGTGC chr9:86237823-86237903 30 1.37e-05 CACTTCCggg aagaggaa agagggaggg chr2:16806630-16806710 32 1.37e-05 GGGGTGGAGA AAGAGGAA GAAAAAACAG chr2:122369472-122369552 7 1.37e-05 AGAAGG AAGAGGAA CTGGAGGTTG chr2:149400811-149400891 17 1.37e-05 agaaaagggg aagaggaa caggaggaaa chr20:21603853-21603933 11 1.37e-05 tgcagacaat aagaggaa gtattcagga chr1:246187547-246187627 1 1.37e-05 . AAGAGGAA CCTCATTCTG chr2:122368119-122368199 31 1.37e-05 ttacaggagg aagaggaa ctggagaagg chrX:37614486-37614566 20 1.37e-05 ggaaaccaca aagaggaa gtccctcacc chr6:25006922-25007002 47 1.37e-05 TCCCCACAGG AAGAGGAA GCATTTGGAA chr6:15087022-15087102 67 1.37e-05 agttcacagt aagaggaa ataaac chr17:58475835-58475915 23 1.37e-05 GTTTCTTAGA AAGAGGAA GGAAATTCAT chr20:54994214-54994294 29 2.77e-05 ATAGCTTAAA AGGAGGAA GGTGGGAGGC chr17:79283169-79283249 30 2.77e-05 CACGGCCACC AGGAGGAA ACTTCCTCTG chr17:15340198-15340278 58 2.77e-05 gctaggctaa aggaggaa gtaggaagtg chrX:153947699-153947779 50 2.77e-05 aaagtggggc aggagGAA GCAGCGTGCA chr2:178104912-178104992 4 2.77e-05 GAC AGGAGGAA AGGGAAGTGC chr1:26158426-26158506 41 2.77e-05 TGAGGTCCTA AGGAGGAA GTTTGCTCTA chr2:38893829-38893909 5 4.18e-05 GCTG GAGAGGAA AGAGCAGGCA chr5:134817203-134817283 73 4.18e-05 GATGAGTGGA GAGAGGAA chr3:15342024-15342104 73 4.18e-05 TCAGGAAGGT GAGAGGAA chr15:41199277-41199357 53 4.18e-05 ACAGGAAGTG GAGAGGAA AAGGCTCTGA chr15:90732332-90732412 26 7.01e-05 ggaagtgggg gggaggaa ggaaaaggag chr3:141401058-141401138 73 7.01e-05 aaggaaggag gggaggaa chr12:131239134-13123921 3 7.01e-05 gg aacaggaa gtaaaccaga chr10:89879994-89880074 49 7.01e-05 aggagagggg aacaggaa ggagggggag chr2:179542427-179542507 12 7.01e-05 ATTCTTCTTC GGGAGGAA CTTCCTCTTC chr7:67383321-67383401 2 7.01e-05 A AACAGGAA GTGAGATGGT chr6:30477093-30477173 31 7.01e-05 GACCACAAAG GGGAGGAA CCAGGAAGTT chr9:140610766-140610846 36 7.01e-05 gtcatggtgg gggaggaa gttgtggtgt chr11:12907528-12907608 65 7.01e-05 cgctgtgagt aacaggaa acagggca chr7:100273532-100273612 73 7.01e-05 TCCGGGGGGC GGGAGGAA chr19:8791736-8791816 65 7.01e-05 ATGGTAGGTA AACAGGAA GGTAAACA chr1:94282615-94282695 64 7.01e-05 CTGTTCTGGT AACAGGAA TCCCTGCTT chr3:33049900-33049980 55 9.86e-05 AGATAAGTCT GACAGGAA GCTGAGGGAA chr16:89683226-89683306 19 9.86e-05 ccaggaagcg gacaggaa gtggccagga chr5:10445619-10445699 56 9.86e-05 AGGGGGTGGA GACAGGAA AAAGAAAAAC chr6:154676270-154676350 31 1.26e-04 TGCACGAGTC AAAAGGAA AGTCTCAGGC chr14:81882684-81882764 49 1.26e-04 TTTCGGGAAA AAAAGGAA GTAGTGGTGT chr7:100485365-100485445 20 1.26e-04 GAGGAAGTGA AAAAGGAA GTCGCGTTTT chr1:231113233-231113313 56 1.26e-04 AGACTGTACT AAAAGGAA ATCAGATTGT chr1:27112805-27112885 56 1.26e-04 AACAGAGCGG AAGAGGAG GGGGTTGGGT chr21:46300947-46301027 55 1.40e-04 GCTTCAAGCT CAGAGGAA TGACCCAAAC chr3:43431318-43431398 53 1.40e-04 TGGCTGACCA CAGAGGAA AGCACGTACT chr12:93362384-93362464 10 1.55e-04 agggaggga ggcaggaa ggaagggagg chr5:108992666-108992746 24 1.83e-04 GTTTCACACA AGAAGGAA TGAACATGTT chr1:203256731-203256811 27 1.83e-04 GCGGTGGGGG AGGAGGAG AGGGTAGGGT chr11:35080773-35080853 73 1.83e-04 taaattgggt aggagGAG chr3:151589556-151589636 12 2.26e-04 TGAGAGCATT CGGAGGAA ACAGGAAGTA chr3:42888796-42888876 57 2.26e-04 TGGAAGAGGT GAGAGGAG CATCATTTCC chr12:1772043-1772123 51 2.69e-04 GGCCCTGGCC GGGAGGAG GGCCTCTAAC chr15:67158538-67158618 45 2.69e-04 TTGAAGAGCA GGGAGGAG CCTGGAGCCT chr19:46018524-46018604 36 2.69e-04 GGGTGGGGTG GGGAGGAG Accagtgctt chr12:51019913-51019993 45 2.69e-04 AGAAAAAAAC GGAAGGAA AGAAAGGAGG chr12:11951947-11952027 6 2.83e-04 TGGAC CACAGGAA ATTTCCTGTT chr5:141062743-141062823 62 2.83e-04 AGTCAGCAGA CACAGGAA CTGTCAGTAG chr5:141703507-141703587 7 2.98e-04 AGGGAA AGCAGGAG CCTTATCTCT chr2:69001940-69002020 51 3.27e-04 CTGACTCCCA CGCAGGAA AAAGGAAGCA chr4:89530713-89530793 43 3.41e-04 cctttcctgt aaaaggag TAGACTTCCT chr12:6446470-6446550 67 3.70e-04 CAATTTCCGC CAGAGGAG GCTTTA chr22:32026471-32026551 45 3.85e-04 ACCCGCGCCC GGCAGGAG ATAAGATGTG chr11:46340330-46340410 40 3.99e-04 GTGAGTTTCA AGAAGGAG GGATATAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:57834556-57834636 1.4e-05 53_[+3]_19 chr9:86237823-86237903 1.4e-05 29_[+3]_43 chr2:16806630-16806710 1.4e-05 31_[+3]_41 chr2:122369472-122369552 1.4e-05 6_[+3]_66 chr2:149400811-149400891 1.4e-05 16_[+3]_56 chr20:21603853-21603933 1.4e-05 10_[+3]_62 chr1:246187547-246187627 1.4e-05 [+3]_72 chr2:122368119-122368199 1.4e-05 30_[+3]_42 chrX:37614486-37614566 1.4e-05 19_[+3]_53 chr6:25006922-25007002 1.4e-05 46_[+3]_26 chr6:15087022-15087102 1.4e-05 66_[+3]_6 chr17:58475835-58475915 1.4e-05 22_[+3]_50 chr20:54994214-54994294 2.8e-05 28_[+3]_44 chr17:79283169-79283249 2.8e-05 29_[+3]_43 chr17:15340198-15340278 2.8e-05 57_[+3]_15 chrX:153947699-153947779 2.8e-05 49_[+3]_23 chr2:178104912-178104992 2.8e-05 3_[+3]_69 chr1:26158426-26158506 2.8e-05 40_[+3]_32 chr2:38893829-38893909 4.2e-05 4_[+3]_68 chr5:134817203-134817283 4.2e-05 72_[+3] chr3:15342024-15342104 4.2e-05 72_[+3] chr15:41199277-41199357 4.2e-05 52_[+3]_20 chr15:90732332-90732412 7e-05 25_[+3]_47 chr3:141401058-141401138 7e-05 72_[+3] chr12:131239134-13123921 7e-05 2_[+3]_70 chr10:89879994-89880074 7e-05 48_[+3]_24 chr2:179542427-179542507 7e-05 11_[+3]_61 chr7:67383321-67383401 7e-05 1_[+3]_71 chr6:30477093-30477173 7e-05 30_[+3]_42 chr9:140610766-140610846 7e-05 35_[+3]_37 chr11:12907528-12907608 7e-05 64_[+3]_8 chr7:100273532-100273612 7e-05 72_[+3] chr19:8791736-8791816 7e-05 64_[+3]_8 chr1:94282615-94282695 7e-05 63_[+3]_9 chr3:33049900-33049980 9.9e-05 54_[+3]_18 chr16:89683226-89683306 9.9e-05 18_[+3]_54 chr5:10445619-10445699 9.9e-05 55_[+3]_17 chr6:154676270-154676350 0.00013 30_[+3]_42 chr14:81882684-81882764 0.00013 48_[+3]_24 chr7:100485365-100485445 0.00013 19_[+3]_53 chr1:231113233-231113313 0.00013 55_[+3]_17 chr1:27112805-27112885 0.00013 55_[+3]_17 chr21:46300947-46301027 0.00014 54_[+3]_18 chr3:43431318-43431398 0.00014 52_[+3]_20 chr12:93362384-93362464 0.00015 9_[+3]_63 chr5:108992666-108992746 0.00018 23_[+3]_49 chr1:203256731-203256811 0.00018 26_[+3]_46 chr11:35080773-35080853 0.00018 72_[+3] chr3:151589556-151589636 0.00023 11_[+3]_61 chr3:42888796-42888876 0.00023 56_[+3]_16 chr12:1772043-1772123 0.00027 50_[+3]_22 chr15:67158538-67158618 0.00027 44_[+3]_28 chr19:46018524-46018604 0.00027 35_[+3]_37 chr12:51019913-51019993 0.00027 44_[+3]_28 chr12:11951947-11952027 0.00028 5_[+3]_67 chr5:141062743-141062823 0.00028 61_[+3]_11 chr5:141703507-141703587 0.0003 6_[+3]_66 chr2:69001940-69002020 0.00033 50_[+3]_22 chr4:89530713-89530793 0.00034 42_[+3]_30 chr12:6446470-6446550 0.00037 66_[+3]_6 chr22:32026471-32026551 0.00038 44_[+3]_28 chr11:46340330-46340410 0.0004 39_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGAGGAA width=8 seqs=62 chr16:57834556-57834636 ( 54) AAGAGGAA 1 chr9:86237823-86237903 ( 30) AAGAGGAA 1 chr2:16806630-16806710 ( 32) AAGAGGAA 1 chr2:122369472-122369552 ( 7) AAGAGGAA 1 chr2:149400811-149400891 ( 17) AAGAGGAA 1 chr20:21603853-21603933 ( 11) AAGAGGAA 1 chr1:246187547-246187627 ( 1) AAGAGGAA 1 chr2:122368119-122368199 ( 31) AAGAGGAA 1 chrX:37614486-37614566 ( 20) AAGAGGAA 1 chr6:25006922-25007002 ( 47) AAGAGGAA 1 chr6:15087022-15087102 ( 67) AAGAGGAA 1 chr17:58475835-58475915 ( 23) AAGAGGAA 1 chr20:54994214-54994294 ( 29) AGGAGGAA 1 chr17:79283169-79283249 ( 30) AGGAGGAA 1 chr17:15340198-15340278 ( 58) AGGAGGAA 1 chrX:153947699-153947779 ( 50) AGGAGGAA 1 chr2:178104912-178104992 ( 4) AGGAGGAA 1 chr1:26158426-26158506 ( 41) AGGAGGAA 1 chr2:38893829-38893909 ( 5) GAGAGGAA 1 chr5:134817203-134817283 ( 73) GAGAGGAA 1 chr3:15342024-15342104 ( 73) GAGAGGAA 1 chr15:41199277-41199357 ( 53) GAGAGGAA 1 chr15:90732332-90732412 ( 26) GGGAGGAA 1 chr3:141401058-141401138 ( 73) GGGAGGAA 1 chr12:131239134-13123921 ( 3) AACAGGAA 1 chr10:89879994-89880074 ( 49) AACAGGAA 1 chr2:179542427-179542507 ( 12) GGGAGGAA 1 chr7:67383321-67383401 ( 2) AACAGGAA 1 chr6:30477093-30477173 ( 31) GGGAGGAA 1 chr9:140610766-140610846 ( 36) GGGAGGAA 1 chr11:12907528-12907608 ( 65) AACAGGAA 1 chr7:100273532-100273612 ( 73) GGGAGGAA 1 chr19:8791736-8791816 ( 65) AACAGGAA 1 chr1:94282615-94282695 ( 64) AACAGGAA 1 chr3:33049900-33049980 ( 55) GACAGGAA 1 chr16:89683226-89683306 ( 19) GACAGGAA 1 chr5:10445619-10445699 ( 56) GACAGGAA 1 chr6:154676270-154676350 ( 31) AAAAGGAA 1 chr14:81882684-81882764 ( 49) AAAAGGAA 1 chr7:100485365-100485445 ( 20) AAAAGGAA 1 chr1:231113233-231113313 ( 56) AAAAGGAA 1 chr1:27112805-27112885 ( 56) AAGAGGAG 1 chr21:46300947-46301027 ( 55) CAGAGGAA 1 chr3:43431318-43431398 ( 53) CAGAGGAA 1 chr12:93362384-93362464 ( 10) GGCAGGAA 1 chr5:108992666-108992746 ( 24) AGAAGGAA 1 chr1:203256731-203256811 ( 27) AGGAGGAG 1 chr11:35080773-35080853 ( 73) AGGAGGAG 1 chr3:151589556-151589636 ( 12) CGGAGGAA 1 chr3:42888796-42888876 ( 57) GAGAGGAG 1 chr12:1772043-1772123 ( 51) GGGAGGAG 1 chr15:67158538-67158618 ( 45) GGGAGGAG 1 chr19:46018524-46018604 ( 36) GGGAGGAG 1 chr12:51019913-51019993 ( 45) GGAAGGAA 1 chr12:11951947-11952027 ( 6) CACAGGAA 1 chr5:141062743-141062823 ( 62) CACAGGAA 1 chr5:141703507-141703587 ( 7) AGCAGGAG 1 chr2:69001940-69002020 ( 51) CGCAGGAA 1 chr4:89530713-89530793 ( 43) AAAAGGAG 1 chr12:6446470-6446550 ( 67) CAGAGGAG 1 chr22:32026471-32026551 ( 45) GGCAGGAG 1 chr11:46340330-46340410 ( 40) AGAAGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 6.8e-026 121 -117 36 -1260 129 -1260 68 -1260 -92 -7 132 -1260 204 -1260 -1260 -1260 -1260 -1260 199 -1260 -1260 -1260 199 -1260 204 -1260 -1260 -1260 173 -1260 -38 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 6.8e-026 0.564516 0.112903 0.322581 0.000000 0.596774 0.000000 0.403226 0.000000 0.129032 0.241935 0.629032 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.806452 0.000000 0.193548 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGGAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AG][GC]AGGAA -------------------------------------------------------------------------------- Time 11.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CWCTTCCY MEME-4 width = 8 sites = 70 llr = 539 E-value = 3.1e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6:::::: pos.-specific C 7191:aa3 probability G :::::::1 matrix T 3319a::6 bits 2.0 *** 1.8 *** 1.6 *** 1.4 ***** Relative 1.2 ***** Entropy 1.0 * ***** (11.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTTCCT consensus TT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:13082135-13082215 30 1.61e-05 CTGTACTGGC CACTTCCT TCCTTGAGGA chrX:2547642-2547722 29 1.61e-05 GACATTGCAA CACTTCCT GTTTCACAGA chr2:121010821-121010901 72 1.61e-05 CGGGACCGTC CACTTCCT C chr5:10787133-10787213 20 1.61e-05 TCCCACTTCC CACTTCCT GCTTCTGGCT chr8:142424982-142425062 73 1.61e-05 GTGGAGTTCC CACTTCCT chr9:134391496-134391576 27 1.61e-05 TCACACGGAA CACTTCCT CTAACACAGG chr20:48964738-48964818 73 1.61e-05 gccatccccc cacttcct chr22:30831858-30831938 37 1.61e-05 TCTGCTGGCG CACTTCCT GCCCCTGCTG chr19:34761007-34761087 23 1.61e-05 CTTCCTCCCC CACTTCCT ATTTTTACCG chr17:39723795-39723875 71 1.61e-05 cccctggacc cacttcct cc chr1:173657678-173657758 61 3.26e-05 ctctctctgc ctcttcct ctctctctct chr17:57611230-57611310 43 3.26e-05 TCCTCTCTTC CTCTTCCT CTTTTTCCCT chr12:3206742-3206822 18 3.26e-05 AGACGATTTC CTCTTCCT CTTCTGTGAC chr2:47406602-47406682 26 3.26e-05 CTCTCCACAC CTCTTCCT CAATTTGCAG chr2:179542427-179542507 24 3.26e-05 GAGGAACTTC CTCTTCCT CAGGTGGAAT chr16:81517175-81517255 1 3.26e-05 . ctcttcct cttcctcttc chr17:70974298-70974378 49 3.26e-05 cttcctcttc ctcttcct tccttccttc chr5:141888319-141888399 53 3.26e-05 GCTTTCTTTC CTCTTCCT CTGCTTCCTC chr3:154745038-154745118 35 4.88e-05 TTGTACGTAA CACTTCCC TCATCTACAC chr22:32026471-32026551 25 4.88e-05 GTACGCTCTT CACTTCCC GTACCCGCGC chr20:61317622-61317702 44 4.88e-05 AAGTGACAGG CACTTCCC TGTTTACTGA chr4:147432682-147432762 37 4.88e-05 TTAGTCTCAT CACTTCCC ACTGTCTACT chr7:100273532-100273612 47 4.88e-05 CTTCCTCTTG CACTTCCC GCTCCGTTTC chr3:138989655-138989735 14 4.88e-05 aaaagtgtgg cacttccc ctttgctcac chr10:81698757-81698837 27 4.88e-05 aagggaaagt cacttccc ttttcagggt chr4:184317699-184317779 24 4.88e-05 AAGAAGCTGA CACTTCCC ACTTCCTTCC chr2:219543987-219544067 62 4.88e-05 ACTTCCCTTT CACTTCCC CGACCATCTA chr15:41199277-41199357 19 4.88e-05 TTCCTCCCTC CACTTCCC GCCCCCCCCT chr4:38320918-38320998 58 6.47e-05 TTCCTTGCCC TACTTCCT TTTTTAGGGG chr10:32266438-32266518 73 6.47e-05 TTTCTAACCT TACTTCCT chr6:137546185-137546265 42 6.47e-05 CCAGTCTCCG TACTTCCT TCACCACACA chr5:78056390-78056470 49 6.47e-05 tccctatagg tacttcct tttctgcatt chr2:9195768-9195848 31 6.47e-05 acttcctgtc tacttcct atatgacttc chr14:81889913-81889993 61 8.14e-05 CTTCCCCTCC CTCTTCCC CCAACAAAAC chr4:89530713-89530793 7 9.77e-05 gcaagt ttcttcct atttctgagt chr11:10603265-10603345 53 1.14e-04 GGCCACTGGT TACTTCCC TAAAGCCTCT chr10:129861491-12986157 38 1.14e-04 TTCCTTTTCC TACTTCCC TCCCTTCCTC chr10:4375808-4375888 9 1.46e-04 TCATAACT CACTTCCG TTTTCTGTGA chr9:140388685-140388765 6 1.46e-04 CCCTG CACTTCCG AGCAGCCCGC chr2:38893829-38893909 43 1.62e-04 TGGCTCCCAC TTCTTCCC TTCTGAAGAA chr14:20958863-20958943 67 1.62e-04 CCTCCCTCCC TTCTTCCC TAtttc chr11:121979058-12197913 16 2.12e-04 CAGTAAAGCC CTTTTCCT AAAGCAATGA chr13:80022737-80022817 19 2.12e-04 GTTCCTGCTG CTTTTCCT CACTTCCTGT chr10:104153805-10415388 66 2.12e-04 AACTTCCTTC CTCTTCCG CTAACTT chr12:57479994-57480074 12 2.12e-04 CTCTGCACTC CTCTTCCG CCCACTTTCC chr11:56894370-56894450 27 2.28e-04 actcacattt catttccc agagcaggtt chr6:135628050-135628130 68 2.76e-04 GGGACTAAAC TATTTCCT AATCT chr10:70975362-70975442 13 2.76e-04 actaagcaat tacttccg tgagcttcct chr1:40525284-40525364 62 2.76e-04 GCTTGTGCAA TATTTCCT GCTCTTTCTT chr9:129748244-129748324 71 2.76e-04 AAAGCAAGGG TATTTCCT GG chr16:5610282-5610362 51 2.76e-04 AGCACTTAGT CACCTCCT CTAGGAACCA chr8:67015835-67015915 40 2.93e-04 CCACTCCTTC CCCTTCCC CTTTTTCTTC chr9:101820338-101820418 71 3.57e-04 caccacaaac cacatcct ct chr7:157283417-157283497 36 3.57e-04 ctgatttctt cacatcct caccaatact chr3:99564352-99564432 32 3.57e-04 ACTTCCTCTT TCCTTCCT GGTTTTTGGG chr7:106505683-106505763 29 3.57e-04 GGTTAAAACT TCCTTCCT GGTAACTGCA chr10:103454660-10345474 70 3.57e-04 cccgctctcg cttttccc ttc chr5:544277-544357 59 3.57e-04 GGGCTGGTCT CACTTCCA CTTCCACTTC chr4:108631175-108631255 42 3.57e-04 ACTTCCCCTT TCCTTCCT TCTGCACCCA chr1:94282615-94282695 34 3.57e-04 CTGATCCCCC CACATCCT GTTCAACCAA chr8:130249987-130250067 56 4.06e-04 tctgtgaaaa ctcctcct aaccccacag chr20:55004767-55004847 28 4.06e-04 CCTTATCTAA CTCCTCCT TACCCCCAGA chr11:12111727-12111807 20 4.06e-04 TCCCCTATCA TTTTTCCT TTTAGACCAC chr15:91590904-91590984 57 4.06e-04 ttcctcctcc ctcctcct GTGGTTTTAG chr10:4191723-4191803 21 4.06e-04 cctctgtgtc ttcttccg cccagctgcc chr20:37433757-37433837 13 4.38e-04 TCCAGCGCTT CACCTCCC TTCTTTCCAG chr2:230786093-230786173 38 5.02e-04 CCCCTCGTCC CATTTCCG GGGAACCCTT chr4:73419411-73419491 49 5.02e-04 GGTACATGTT CTCTTCCA CTCAGCCAGG chr10:12824613-12824693 8 5.35e-04 CTGGTGT TCCTTCCC CCACCAGCAG chr12:51019913-51019993 7 5.99e-04 TTCCTG TTTTTCCC TCCCTTCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:13082135-13082215 1.6e-05 29_[+4]_43 chrX:2547642-2547722 1.6e-05 28_[+4]_44 chr2:121010821-121010901 1.6e-05 71_[+4]_1 chr5:10787133-10787213 1.6e-05 19_[+4]_53 chr8:142424982-142425062 1.6e-05 72_[+4] chr9:134391496-134391576 1.6e-05 26_[+4]_46 chr20:48964738-48964818 1.6e-05 72_[+4] chr22:30831858-30831938 1.6e-05 36_[+4]_36 chr19:34761007-34761087 1.6e-05 22_[+4]_50 chr17:39723795-39723875 1.6e-05 70_[+4]_2 chr1:173657678-173657758 3.3e-05 60_[+4]_12 chr17:57611230-57611310 3.3e-05 42_[+4]_30 chr12:3206742-3206822 3.3e-05 17_[+4]_55 chr2:47406602-47406682 3.3e-05 25_[+4]_47 chr2:179542427-179542507 3.3e-05 23_[+4]_49 chr16:81517175-81517255 3.3e-05 [+4]_72 chr17:70974298-70974378 3.3e-05 48_[+4]_24 chr5:141888319-141888399 3.3e-05 52_[+4]_20 chr3:154745038-154745118 4.9e-05 34_[+4]_38 chr22:32026471-32026551 4.9e-05 24_[+4]_48 chr20:61317622-61317702 4.9e-05 43_[+4]_29 chr4:147432682-147432762 4.9e-05 36_[+4]_36 chr7:100273532-100273612 4.9e-05 46_[+4]_26 chr3:138989655-138989735 4.9e-05 13_[+4]_59 chr10:81698757-81698837 4.9e-05 26_[+4]_46 chr4:184317699-184317779 4.9e-05 23_[+4]_49 chr2:219543987-219544067 4.9e-05 61_[+4]_11 chr15:41199277-41199357 4.9e-05 18_[+4]_54 chr4:38320918-38320998 6.5e-05 57_[+4]_15 chr10:32266438-32266518 6.5e-05 72_[+4] chr6:137546185-137546265 6.5e-05 41_[+4]_31 chr5:78056390-78056470 6.5e-05 48_[+4]_24 chr2:9195768-9195848 6.5e-05 30_[+4]_42 chr14:81889913-81889993 8.1e-05 60_[+4]_12 chr4:89530713-89530793 9.8e-05 6_[+4]_66 chr11:10603265-10603345 0.00011 52_[+4]_20 chr10:129861491-12986157 0.00011 37_[+4]_35 chr10:4375808-4375888 0.00015 8_[+4]_64 chr9:140388685-140388765 0.00015 5_[+4]_67 chr2:38893829-38893909 0.00016 42_[+4]_30 chr14:20958863-20958943 0.00016 66_[+4]_6 chr11:121979058-12197913 0.00021 15_[+4]_57 chr13:80022737-80022817 0.00021 18_[+4]_54 chr10:104153805-10415388 0.00021 65_[+4]_7 chr12:57479994-57480074 0.00021 11_[+4]_61 chr11:56894370-56894450 0.00023 26_[+4]_46 chr6:135628050-135628130 0.00028 67_[+4]_5 chr10:70975362-70975442 0.00028 12_[+4]_60 chr1:40525284-40525364 0.00028 61_[+4]_11 chr9:129748244-129748324 0.00028 70_[+4]_2 chr16:5610282-5610362 0.00028 50_[+4]_22 chr8:67015835-67015915 0.00029 39_[+4]_33 chr9:101820338-101820418 0.00036 70_[+4]_2 chr7:157283417-157283497 0.00036 35_[+4]_37 chr3:99564352-99564432 0.00036 31_[+4]_41 chr7:106505683-106505763 0.00036 28_[+4]_44 chr10:103454660-10345474 0.00036 69_[+4]_3 chr5:544277-544357 0.00036 58_[+4]_14 chr4:108631175-108631255 0.00036 41_[+4]_31 chr1:94282615-94282695 0.00036 33_[+4]_39 chr8:130249987-130250067 0.00041 55_[+4]_17 chr20:55004767-55004847 0.00041 27_[+4]_45 chr11:12111727-12111807 0.00041 19_[+4]_53 chr15:91590904-91590984 0.00041 56_[+4]_16 chr10:4191723-4191803 0.00041 20_[+4]_52 chr20:37433757-37433837 0.00044 12_[+4]_60 chr2:230786093-230786173 0.0005 37_[+4]_35 chr4:73419411-73419491 0.0005 48_[+4]_24 chr10:12824613-12824693 0.00053 7_[+4]_65 chr12:51019913-51019993 0.0006 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWCTTCCY width=8 seqs=70 chr8:13082135-13082215 ( 30) CACTTCCT 1 chrX:2547642-2547722 ( 29) CACTTCCT 1 chr2:121010821-121010901 ( 72) CACTTCCT 1 chr5:10787133-10787213 ( 20) CACTTCCT 1 chr8:142424982-142425062 ( 73) CACTTCCT 1 chr9:134391496-134391576 ( 27) CACTTCCT 1 chr20:48964738-48964818 ( 73) CACTTCCT 1 chr22:30831858-30831938 ( 37) CACTTCCT 1 chr19:34761007-34761087 ( 23) CACTTCCT 1 chr17:39723795-39723875 ( 71) CACTTCCT 1 chr1:173657678-173657758 ( 61) CTCTTCCT 1 chr17:57611230-57611310 ( 43) CTCTTCCT 1 chr12:3206742-3206822 ( 18) CTCTTCCT 1 chr2:47406602-47406682 ( 26) CTCTTCCT 1 chr2:179542427-179542507 ( 24) CTCTTCCT 1 chr16:81517175-81517255 ( 1) CTCTTCCT 1 chr17:70974298-70974378 ( 49) CTCTTCCT 1 chr5:141888319-141888399 ( 53) CTCTTCCT 1 chr3:154745038-154745118 ( 35) CACTTCCC 1 chr22:32026471-32026551 ( 25) CACTTCCC 1 chr20:61317622-61317702 ( 44) CACTTCCC 1 chr4:147432682-147432762 ( 37) CACTTCCC 1 chr7:100273532-100273612 ( 47) CACTTCCC 1 chr3:138989655-138989735 ( 14) CACTTCCC 1 chr10:81698757-81698837 ( 27) CACTTCCC 1 chr4:184317699-184317779 ( 24) CACTTCCC 1 chr2:219543987-219544067 ( 62) CACTTCCC 1 chr15:41199277-41199357 ( 19) CACTTCCC 1 chr4:38320918-38320998 ( 58) TACTTCCT 1 chr10:32266438-32266518 ( 73) TACTTCCT 1 chr6:137546185-137546265 ( 42) TACTTCCT 1 chr5:78056390-78056470 ( 49) TACTTCCT 1 chr2:9195768-9195848 ( 31) TACTTCCT 1 chr14:81889913-81889993 ( 61) CTCTTCCC 1 chr4:89530713-89530793 ( 7) TTCTTCCT 1 chr11:10603265-10603345 ( 53) TACTTCCC 1 chr10:129861491-12986157 ( 38) TACTTCCC 1 chr10:4375808-4375888 ( 9) CACTTCCG 1 chr9:140388685-140388765 ( 6) CACTTCCG 1 chr2:38893829-38893909 ( 43) TTCTTCCC 1 chr14:20958863-20958943 ( 67) TTCTTCCC 1 chr11:121979058-12197913 ( 16) CTTTTCCT 1 chr13:80022737-80022817 ( 19) CTTTTCCT 1 chr10:104153805-10415388 ( 66) CTCTTCCG 1 chr12:57479994-57480074 ( 12) CTCTTCCG 1 chr11:56894370-56894450 ( 27) CATTTCCC 1 chr6:135628050-135628130 ( 68) TATTTCCT 1 chr10:70975362-70975442 ( 13) TACTTCCG 1 chr1:40525284-40525364 ( 62) TATTTCCT 1 chr9:129748244-129748324 ( 71) TATTTCCT 1 chr16:5610282-5610362 ( 51) CACCTCCT 1 chr8:67015835-67015915 ( 40) CCCTTCCC 1 chr9:101820338-101820418 ( 71) CACATCCT 1 chr7:157283417-157283497 ( 36) CACATCCT 1 chr3:99564352-99564432 ( 32) TCCTTCCT 1 chr7:106505683-106505763 ( 29) TCCTTCCT 1 chr10:103454660-10345474 ( 70) CTTTTCCC 1 chr5:544277-544357 ( 59) CACTTCCA 1 chr4:108631175-108631255 ( 42) TCCTTCCT 1 chr1:94282615-94282695 ( 34) CACATCCT 1 chr8:130249987-130250067 ( 56) CTCCTCCT 1 chr20:55004767-55004847 ( 28) CTCCTCCT 1 chr11:12111727-12111807 ( 20) TTTTTCCT 1 chr15:91590904-91590984 ( 57) CTCCTCCT 1 chr10:4191723-4191803 ( 21) TTCTTCCG 1 chr20:37433757-37433837 ( 13) CACCTCCC 1 chr2:230786093-230786173 ( 38) CATTTCCG 1 chr4:73419411-73419491 ( 49) CTCTTCCA 1 chr10:12824613-12824693 ( 8) TCCTTCCC 1 chr12:51019913-51019993 ( 7) TTTTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.40933 E= 3.1e-021 -1277 146 -1277 26 126 -183 -1277 45 -1277 175 -1277 -81 -251 -183 -1277 182 -1277 -1277 -1277 199 -1277 198 -1277 -1277 -1277 198 -1277 -1277 -309 24 -133 119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 3.1e-021 0.000000 0.700000 0.000000 0.300000 0.585714 0.071429 0.000000 0.342857 0.000000 0.857143 0.000000 0.142857 0.042857 0.071429 0.000000 0.885714 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.300000 0.100000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTTCCY MEME-4 regular expression -------------------------------------------------------------------------------- [CT][AT]CTTCC[TC] -------------------------------------------------------------------------------- Time 14.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRAGKRR MEME-5 width = 8 sites = 58 llr = 424 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3:58::34 pos.-specific C :::::::: probability G 7a5:a576 matrix T :::2:5:: bits 2.0 * * 1.8 * * 1.6 * * 1.4 * * Relative 1.2 ** ** Entropy 1.0 ******** (10.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGTGG consensus A AT GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:75051875-75051955 62 1.53e-05 GGGGCCAGAG GGGAGTGG CGCCAGCAGC chr15:90732332-90732412 16 3.02e-05 aatgaaAgaa ggaagtgg gggggaggaa chr3:15342024-15342104 37 3.02e-05 GGCAGCATCT GGAAGTGG ACATCGCCCC chr17:7746379-7746459 42 3.02e-05 GTGGGAAAGG GGAAGTGG CAGAGGGGAA chr16:89683226-89683306 1 3.02e-05 . ggaagtgg ccaggaagcg chr9:86237823-86237903 46 4.55e-05 aaagagggag gggagggg agaggaaaag chr2:149400811-149400891 39 4.55e-05 aggaaaaagg gggagggg aggaagtgga chr8:142424982-142425062 9 4.55e-05 CCTGATGG GGGAGGGG CAAGTGACCC chr8:29387484-29387564 63 4.55e-05 AAGAATGTGG GGGAGGGG AGCTTACATT chr12:1772043-1772123 70 4.55e-05 GCCTCTAACC GGGAGGGG CTG chr5:544277-544357 44 4.55e-05 GTGAGGCCGT GGGAGGGG CTGGTCTCAC chr7:100273532-100273612 18 4.55e-05 CTGTGTCCGA GGGAGGGG TTTCCCCTGC chr10:118997053-11899713 23 4.55e-05 GGGTTTATAA GGGAGGGG CCTGTCTGAT chr15:81292164-81292244 16 9.02e-05 GCGTTTTGCT GGGAGTAG CCCAGGTGTT chr4:82329641-82329721 58 9.02e-05 AAGAAGGGCG GGGAGTAG ATGGAGGCAG chr12:131239134-13123921 25 1.19e-04 accagaagca ggaagtga atgaacagga chr7:67383321-67383401 39 1.19e-04 TTCTGAAACA GGAAGTGA GATGGTGGGA chr8:11314290-11314370 14 1.19e-04 GCTGGCTAAG GGAAGtga gtggggctgg chr15:67158538-67158618 26 1.19e-04 ACGAGAGGAC GGAAGTGA GTTGAAGAGC chr3:197482908-197482988 16 1.19e-04 TGTGATTATG GGAAGTAG GTAGGAAATT chr11:35080773-35080853 5 1.19e-04 aagt ggaagtag ctatcatcat chr4:48214381-48214461 27 1.19e-04 CCCCTTTGTG GGAAGTAG AACAGTGTGG chr5:132109848-132109928 40 1.19e-04 GGGTGACAAC GGAAGTGA CAGATGGTGC chr3:151589556-151589636 36 1.49e-04 AGTAGGACTT GGGAGGGA AACAAGGCTA chr12:93362384-93362464 2 1.49e-04 a gggaggga ggcaggaagg chr2:16806630-16806710 62 1.49e-04 AGTGAAGTGG GGGAGGAG GGAAGGAAAT chr10:89879994-89880074 20 1.78e-04 ggggaaaaca ggaaggag ggggaacaag chr15:43398318-43398398 30 1.93e-04 CGCAGACTCG AGGAGTGG CTTCCGGCCC chr12:89740283-89740363 55 2.07e-04 TATTAATTTC AGAAGTGG ACTGACAAAC chr14:91668863-91668943 7 2.52e-04 GGCTGT GGGTGTGG TGCACACAGT chr12:3206742-3206822 43 2.52e-04 GACTTCCTGG AGGAGGGG TGGCAAGTAC chr2:38893829-38893909 28 2.52e-04 AGGCAAGAGG GGGTGTGG CTCCCACTTC chr20:56008156-56008236 43 2.52e-04 GGCCAGGGCT GGGTGTGG CGGGGCCTGC chr1:51899433-51899513 31 2.96e-04 AGGCCTGACA GGATGTGG CTTTAACTTC chr9:126597543-126597623 72 2.96e-04 CTGGTTTCCA GGAAGTAA G chr3:197482709-197482789 30 2.96e-04 TGTGTTTTTG GGAAGTAA GTAGGAAAAT chr2:103511959-103512039 35 2.96e-04 GGAAGAAAGG GGAAGTAA GTCGTCATGG chr5:10445619-10445699 43 2.96e-04 CAGCACAGGA AGAAGGGG GTGGAGACAG chr9:140610766-140610846 7 3.26e-04 tggtgg gggaggaa gttgtggtgg chr19:46018524-46018604 26 3.26e-04 AGCCTGGTGT GGGTGGGG TGGGGAGGAG chr19:51631152-51631232 67 3.85e-04 AAGCCACATC AGGAGTGA CTCAGG chr11:46340330-46340410 26 3.85e-04 GGGAAGATTA AGGAGTGA GTTTCAAGAA chr1:198526194-198526274 24 4.13e-04 AAGGAAGTGC AGAAGTGA GAATGTGTGT chr20:61317622-61317702 32 4.13e-04 CCCCCAGCTG AGAAGTGA CAGGCACTTC chr1:203258745-203258825 50 4.72e-04 TAAGCACTGT GGGTGTGA AGGGATGGTT chr14:81882684-81882764 21 4.72e-04 AGTGCAAAGA AGGAGGAG ACCTTAGAAA chr10:25201321-25201401 47 4.72e-04 ggcatcctct gggtgtga ggcggtatct chr2:122369472-122369552 58 5.30e-04 GAGGAACTGG AGAAGGAG GCATTGGAGG chr7:5733220-5733300 54 5.30e-04 AGAGGAAGTA AGAAGGGA ACTGTAGGTC chr18:830567-830647 71 5.61e-04 CATTTGGAGT GGGTGGAG AG chr1:154358165-154358245 4 5.61e-04 TGT GGGTGGAG CTCCAGGAAG chr11:74494731-74494811 71 5.61e-04 TCCTCTTTTC GGGTGGAG GA chr4:190511252-190511332 30 5.91e-04 GGGAGGGTGA GGATGGAG GCTGGGAGAT chr22:32026471-32026551 56 6.49e-04 GCAGGAGATA AGATGTGG AGGAAGTGAG chr2:112813882-112813962 57 6.93e-04 GTGTGTGTGT AGGTGGGG CGGGACTTGT chr1:26158426-26158506 3 6.93e-04 GA AGGAGGAA GACCCTGCTG chr17:15340198-15340278 37 7.36e-04 agggggagct agaaggaa tctgctaggc chr6:158430674-158430754 50 7.65e-04 AAGAAAGGGG GGATGgaa gttgcaaatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:75051875-75051955 1.5e-05 61_[+5]_11 chr15:90732332-90732412 3e-05 15_[+5]_57 chr3:15342024-15342104 3e-05 36_[+5]_36 chr17:7746379-7746459 3e-05 41_[+5]_31 chr16:89683226-89683306 3e-05 [+5]_72 chr9:86237823-86237903 4.6e-05 45_[+5]_27 chr2:149400811-149400891 4.6e-05 38_[+5]_34 chr8:142424982-142425062 4.6e-05 8_[+5]_64 chr8:29387484-29387564 4.6e-05 62_[+5]_10 chr12:1772043-1772123 4.6e-05 69_[+5]_3 chr5:544277-544357 4.6e-05 43_[+5]_29 chr7:100273532-100273612 4.6e-05 17_[+5]_55 chr10:118997053-11899713 4.6e-05 22_[+5]_50 chr15:81292164-81292244 9e-05 15_[+5]_57 chr4:82329641-82329721 9e-05 57_[+5]_15 chr12:131239134-13123921 0.00012 24_[+5]_48 chr7:67383321-67383401 0.00012 38_[+5]_34 chr8:11314290-11314370 0.00012 13_[+5]_59 chr15:67158538-67158618 0.00012 25_[+5]_47 chr3:197482908-197482988 0.00012 15_[+5]_57 chr11:35080773-35080853 0.00012 4_[+5]_68 chr4:48214381-48214461 0.00012 26_[+5]_46 chr5:132109848-132109928 0.00012 39_[+5]_33 chr3:151589556-151589636 0.00015 35_[+5]_37 chr12:93362384-93362464 0.00015 1_[+5]_71 chr2:16806630-16806710 0.00015 61_[+5]_11 chr10:89879994-89880074 0.00018 19_[+5]_53 chr15:43398318-43398398 0.00019 29_[+5]_43 chr12:89740283-89740363 0.00021 54_[+5]_18 chr14:91668863-91668943 0.00025 6_[+5]_66 chr12:3206742-3206822 0.00025 42_[+5]_30 chr2:38893829-38893909 0.00025 27_[+5]_45 chr20:56008156-56008236 0.00025 42_[+5]_30 chr1:51899433-51899513 0.0003 30_[+5]_42 chr9:126597543-126597623 0.0003 71_[+5]_1 chr3:197482709-197482789 0.0003 29_[+5]_43 chr2:103511959-103512039 0.0003 34_[+5]_38 chr5:10445619-10445699 0.0003 42_[+5]_30 chr9:140610766-140610846 0.00033 6_[+5]_66 chr19:46018524-46018604 0.00033 25_[+5]_47 chr19:51631152-51631232 0.00038 66_[+5]_6 chr11:46340330-46340410 0.00038 25_[+5]_47 chr1:198526194-198526274 0.00041 23_[+5]_49 chr20:61317622-61317702 0.00041 31_[+5]_41 chr1:203258745-203258825 0.00047 49_[+5]_23 chr14:81882684-81882764 0.00047 20_[+5]_52 chr10:25201321-25201401 0.00047 46_[+5]_26 chr2:122369472-122369552 0.00053 57_[+5]_15 chr7:5733220-5733300 0.00053 53_[+5]_19 chr18:830567-830647 0.00056 70_[+5]_2 chr1:154358165-154358245 0.00056 3_[+5]_69 chr11:74494731-74494811 0.00056 70_[+5]_2 chr4:190511252-190511332 0.00059 29_[+5]_43 chr22:32026471-32026551 0.00065 55_[+5]_17 chr2:112813882-112813962 0.00069 56_[+5]_16 chr1:26158426-26158506 0.00069 2_[+5]_70 chr17:15340198-15340278 0.00074 36_[+5]_36 chr6:158430674-158430754 0.00077 49_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRAGKRR width=8 seqs=58 chr11:75051875-75051955 ( 62) GGGAGTGG 1 chr15:90732332-90732412 ( 16) GGAAGTGG 1 chr3:15342024-15342104 ( 37) GGAAGTGG 1 chr17:7746379-7746459 ( 42) GGAAGTGG 1 chr16:89683226-89683306 ( 1) GGAAGTGG 1 chr9:86237823-86237903 ( 46) GGGAGGGG 1 chr2:149400811-149400891 ( 39) GGGAGGGG 1 chr8:142424982-142425062 ( 9) GGGAGGGG 1 chr8:29387484-29387564 ( 63) GGGAGGGG 1 chr12:1772043-1772123 ( 70) GGGAGGGG 1 chr5:544277-544357 ( 44) GGGAGGGG 1 chr7:100273532-100273612 ( 18) GGGAGGGG 1 chr10:118997053-11899713 ( 23) GGGAGGGG 1 chr15:81292164-81292244 ( 16) GGGAGTAG 1 chr4:82329641-82329721 ( 58) GGGAGTAG 1 chr12:131239134-13123921 ( 25) GGAAGTGA 1 chr7:67383321-67383401 ( 39) GGAAGTGA 1 chr8:11314290-11314370 ( 14) GGAAGTGA 1 chr15:67158538-67158618 ( 26) GGAAGTGA 1 chr3:197482908-197482988 ( 16) GGAAGTAG 1 chr11:35080773-35080853 ( 5) GGAAGTAG 1 chr4:48214381-48214461 ( 27) GGAAGTAG 1 chr5:132109848-132109928 ( 40) GGAAGTGA 1 chr3:151589556-151589636 ( 36) GGGAGGGA 1 chr12:93362384-93362464 ( 2) GGGAGGGA 1 chr2:16806630-16806710 ( 62) GGGAGGAG 1 chr10:89879994-89880074 ( 20) GGAAGGAG 1 chr15:43398318-43398398 ( 30) AGGAGTGG 1 chr12:89740283-89740363 ( 55) AGAAGTGG 1 chr14:91668863-91668943 ( 7) GGGTGTGG 1 chr12:3206742-3206822 ( 43) AGGAGGGG 1 chr2:38893829-38893909 ( 28) GGGTGTGG 1 chr20:56008156-56008236 ( 43) GGGTGTGG 1 chr1:51899433-51899513 ( 31) GGATGTGG 1 chr9:126597543-126597623 ( 72) GGAAGTAA 1 chr3:197482709-197482789 ( 30) GGAAGTAA 1 chr2:103511959-103512039 ( 35) GGAAGTAA 1 chr5:10445619-10445699 ( 43) AGAAGGGG 1 chr9:140610766-140610846 ( 7) GGGAGGAA 1 chr19:46018524-46018604 ( 26) GGGTGGGG 1 chr19:51631152-51631232 ( 67) AGGAGTGA 1 chr11:46340330-46340410 ( 26) AGGAGTGA 1 chr1:198526194-198526274 ( 24) AGAAGTGA 1 chr20:61317622-61317702 ( 32) AGAAGTGA 1 chr1:203258745-203258825 ( 50) GGGTGTGA 1 chr14:81882684-81882764 ( 21) AGGAGGAG 1 chr10:25201321-25201401 ( 47) GGGTGTGA 1 chr2:122369472-122369552 ( 58) AGAAGGAG 1 chr7:5733220-5733300 ( 54) AGAAGGGA 1 chr18:830567-830647 ( 71) GGGTGGAG 1 chr1:154358165-154358245 ( 4) GGGTGGAG 1 chr11:74494731-74494811 ( 71) GGGTGGAG 1 chr4:190511252-190511332 ( 30) GGATGGAG 1 chr22:32026471-32026551 ( 56) AGATGTGG 1 chr2:112813882-112813962 ( 57) AGGTGGGG 1 chr1:26158426-26158506 ( 3) AGGAGGAA 1 chr17:15340198-15340278 ( 37) AGAAGGAA 1 chr6:158430674-158430754 ( 50) GGATGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 3.1e+001 9 -1250 156 -1250 -1250 -1250 199 -1250 93 -1250 109 -1250 164 -1250 -1250 -6 -1250 -1250 199 -1250 -1250 -1250 89 109 50 -1250 138 -1250 57 -1250 134 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 3.1e+001 0.258621 0.000000 0.741379 0.000000 0.000000 0.000000 1.000000 0.000000 0.465517 0.000000 0.534483 0.000000 0.758621 0.000000 0.000000 0.241379 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.465517 0.534483 0.344828 0.000000 0.655172 0.000000 0.362069 0.000000 0.637931 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRAGKRR MEME-5 regular expression -------------------------------------------------------------------------------- [GA]G[GA][AT]G[TG][GA][GA] -------------------------------------------------------------------------------- Time 17.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:89530713-89530793 6.09e-05 6_[+4(9.77e-05)]_39_[+1(3.19e-05)]_\ 19 chr1:213005282-213005362 1.29e-02 69_[+1(4.78e-05)]_3 chr17:58475835-58475915 3.91e-04 22_[+3(1.37e-05)]_16_[+3(1.37e-05)]_\ 26 chr1:153917706-153917786 4.96e-06 48_[+1(3.19e-05)]_24 chr2:9195768-9195848 1.12e-02 20_[+1(3.19e-05)]_2_[+4(6.47e-05)]_\ 5_[+1(4.78e-05)]_3_[+1(3.19e-05)]_18 chr1:21501963-21502043 9.04e-05 29_[+1(3.19e-05)]_43 chr5:10445619-10445699 2.51e-04 23_[+3(1.37e-05)]_7_[+2(8.52e-05)]_\ 9_[+3(9.86e-05)]_17 chr6:15087022-15087102 4.93e-07 9_[+1(3.19e-05)]_16_[+2(9.99e-05)]_\ 25_[+3(1.37e-05)]_6 chr16:81503640-81503720 4.43e-08 42_[+3(2.77e-05)]_8_[+4(1.61e-05)]_\ 14 chr19:55538271-55538351 5.58e-03 29_[+1(8.06e-05)]_6_[+4(1.61e-05)]_\ 29 chr1:154465935-154466015 4.52e-01 80 chr11:109940283-10994036 4.29e-07 47_[+2(1.45e-05)]_25 chr5:10705162-10705242 4.99e-03 13_[+1(3.19e-05)]_59 chr6:137612766-137612846 1.10e-03 2_[+5(3.02e-05)]_70 chr2:159077716-159077796 8.28e-04 10_[+3(2.77e-05)]_62 chr10:118997053-11899713 3.23e-05 22_[+5(4.55e-05)]_50 chr7:5733220-5733300 1.84e-04 45_[+2(2.85e-05)]_27 chr12:51019913-51019993 4.09e-07 56_[+3(2.77e-05)]_16 chr4:190511252-190511332 1.14e-03 80 chr16:5610282-5610362 8.09e-05 26_[+4(1.61e-05)]_46 chr16:89683226-89683306 9.03e-05 [+5(3.02e-05)]_13_[+2(1.45e-05)]_14_\ [+2(1.45e-05)]_29 chr5:78056390-78056470 1.07e-03 15_[+1(3.19e-05)]_26_[+1(4.78e-05)]_\ 23 chr6:25006922-25007002 6.00e-05 46_[+3(1.37e-05)]_11_[+2(2.85e-05)]_\ 7 chr15:37404571-37404651 6.75e-05 29_[+2(2.85e-05)]_43 chr11:74494731-74494811 9.40e-03 80 chr15:41199277-41199357 2.41e-09 6_[+1(3.19e-05)]_4_[+4(4.88e-05)]_\ 18_[+2(1.45e-05)]_[+3(4.18e-05)]_20 chr19:54272516-54272596 2.59e-02 71_[+4(4.88e-05)]_1 chr1:94282615-94282695 6.90e-03 63_[+3(7.01e-05)]_9 chr2:219543987-219544067 9.33e-03 37_[+1(3.19e-05)]_16_[+4(4.88e-05)]_\ 11 chr18:45526333-45526413 1.42e-02 80 chr4:184317699-184317779 2.21e-03 23_[+4(4.88e-05)]_[+1(4.78e-05)]_33_\ [+4(9.77e-05)] chr19:8791736-8791816 5.87e-05 20_[+2(1.45e-05)]_36_[+3(7.01e-05)]_\ 8 chr10:81698757-81698837 9.63e-04 26_[+4(4.88e-05)]_46 chr1:26158426-26158506 6.22e-04 2_[+3(2.77e-05)]_30_[+3(2.77e-05)]_\ 11_[+2(8.52e-05)]_13 chr5:141062743-141062823 1.50e-04 33_[+3(4.18e-05)]_39 chr3:43431318-43431398 3.22e-05 33_[+2(1.45e-05)]_39 chr3:138989655-138989735 1.91e-03 13_[+4(4.88e-05)]_47_[+1(3.19e-05)]_\ 4 chr3:171046633-171046713 8.14e-07 23_[+2(9.99e-05)]_35_[+4(1.61e-05)]_\ 6 chr2:178104912-178104992 1.21e-04 3_[+3(2.77e-05)]_1_[+2(8.52e-05)]_4_\ [+2(8.52e-05)]_37_[+2(1.45e-05)]_3 chr4:139228661-139228741 4.85e-03 48_[+1(3.19e-05)]_24 chr7:100273532-100273612 1.44e-06 17_[+5(4.55e-05)]_10_[+1(8.06e-05)]_\ 3_[+4(4.88e-05)]_18_[+3(7.01e-05)] chr4:108631175-108631255 3.43e-02 80 chr2:47714468-47714548 2.47e-03 22_[+1(3.19e-05)]_50 chr17:7746379-7746459 6.13e-05 41_[+5(3.02e-05)]_5_[+2(8.52e-05)]_\ 18 chr6:158430674-158430754 2.73e-03 8_[+3(9.86e-05)]_64 chr5:132109848-132109928 8.51e-03 80 chr11:75051875-75051955 2.24e-06 20_[+4(1.61e-05)]_33_[+5(1.53e-05)]_\ 11 chrX:37614486-37614566 2.51e-04 2_[+2(5.67e-05)]_9_[+3(1.37e-05)]_\ 53 chrX:153947699-153947779 1.66e-04 11_[+2(8.52e-05)]_30_[+3(2.77e-05)]_\ 23 chr15:55514927-55515007 1.76e-01 80 chr12:57479994-57480074 4.75e-02 80 chr4:84540255-84540335 7.64e-06 24_[+3(1.37e-05)]_48 chr9:129748244-129748324 4.11e-04 50_[+4(4.88e-05)]_22 chr17:39723795-39723875 3.84e-03 28_[+4(1.61e-05)]_16_[+4(1.61e-05)]_\ 10_[+4(1.61e-05)]_2 chr1:154358165-154358245 3.79e-03 15_[+2(4.26e-05)]_57 chr19:54523642-54523722 2.15e-01 80 chr5:544277-544357 1.17e-05 43_[+5(4.55e-05)]_19_[+4(1.61e-05)]_\ 2 chr4:48214381-48214461 1.46e-02 8_[+2(9.99e-05)]_64 chr17:75338571-75338651 2.54e-04 21_[+1(4.78e-05)]_51 chr11:12907528-12907608 1.61e-03 39_[+2(8.52e-05)]_17_[+3(7.01e-05)]_\ 8 chr19:46018524-46018604 2.06e-05 80 chr10:4191723-4191803 2.68e-01 80 chr2:69097511-69097591 6.54e-05 47_[+4(1.61e-05)]_25 chr11:35080773-35080853 3.38e-04 56_[+2(2.85e-05)]_16 chr2:64447545-64447625 3.27e-03 53_[+1(3.19e-05)]_19 chr2:103035057-103035137 5.84e-04 34_[+4(1.61e-05)]_38 chr2:103511959-103512039 6.78e-04 20_[+3(7.01e-05)]_52 chr4:82329641-82329721 1.36e-02 57_[+5(9.02e-05)]_15 chr3:197482709-197482789 3.53e-03 80 chr15:81400334-81400414 2.94e-02 80 chr6:137546185-137546265 1.09e-02 3_[+1(3.19e-05)]_31_[+1(4.78e-05)]_\ 30 chr19:34761007-34761087 8.35e-07 11_[+1(3.19e-05)]_3_[+4(1.61e-05)]_\ 19_[+2(5.67e-05)]_23 chr5:141888319-141888399 1.18e-02 18_[+1(8.06e-05)]_26_[+4(3.26e-05)]_\ 2_[+1(8.06e-05)]_10 chr2:122368119-122368199 3.73e-04 6_[+3(2.77e-05)]_16_[+3(1.37e-05)]_\ 31_[+3(1.37e-05)]_3 chr19:55553355-55553435 4.58e-02 12_[+1(8.06e-05)]_60 chr4:147432682-147432762 1.53e-02 36_[+4(4.88e-05)]_36 chr10:104153805-10415388 7.50e-03 56_[+1(4.78e-05)]_16 chr13:80022737-80022817 3.97e-03 26_[+4(1.61e-05)]_46 chr16:87814447-87814527 1.17e-01 80 chr5:139991722-139991802 2.19e-01 2_[+2(9.99e-05)]_70 chr22:30831858-30831938 4.16e-03 15_[+4(1.61e-05)]_13_[+4(1.61e-05)]_\ 36 chr17:15340198-15340278 1.88e-05 57_[+3(2.77e-05)]_2_[+2(1.45e-05)]_\ 5 chr8:67015835-67015915 5.08e-02 51_[+4(9.77e-05)]_21 chr3:197482908-197482988 7.17e-03 80 chrX:118149572-118149652 2.38e-02 80 chr1:203256731-203256811 1.11e-02 80 chr10:15367767-15367847 1.17e-03 7_[+2(1.45e-05)]_30_[+2(8.52e-05)]_\ 27 chr9:140610766-140610846 2.41e-03 6_[+3(7.01e-05)]_21_[+3(7.01e-05)]_\ 18_[+3(7.01e-05)]_11 chr17:70974298-70974378 1.69e-02 10_[+4(8.14e-05)]_24_[+4(3.26e-05)]_\ 30 chr1:246187547-246187627 1.47e-04 [+3(1.37e-05)]_53_[+2(4.26e-05)]_11 chr16:81517175-81517255 2.45e-02 [+4(3.26e-05)]_4_[+4(3.26e-05)]_4_\ [+4(3.26e-05)]_48 chr7:97762647-97762727 2.18e-01 80 chr15:67158538-67158618 7.27e-04 5_[+2(8.52e-05)]_67 chr1:27112805-27112885 1.70e-04 38_[+3(7.01e-05)]_34 chr1:42149843-42149923 1.79e-07 27_[+1(3.19e-05)]_31_[+2(1.45e-05)]_\ 6 chr10:25201321-25201401 8.35e-03 22_[+1(3.19e-05)]_50 chr4:185276470-185276550 1.42e-02 42_[+1(3.19e-05)]_30 chr4:153320570-153320650 3.00e-04 68_[+2(2.85e-05)]_4 chr5:108992666-108992746 2.19e-04 71_[+1(8.06e-05)]_1 chr16:55786864-55786944 3.16e-03 23_[+2(4.26e-05)]_10_[+2(5.67e-05)]_\ 31 chr14:81889913-81889993 1.29e-02 60_[+4(8.14e-05)]_12 chr9:126597543-126597623 8.19e-06 19_[+3(1.37e-05)]_43_[+2(2.85e-05)]_\ 2 chr10:129861491-12986157 7.29e-04 24_[+4(1.61e-05)]_48 chr19:55428376-55428456 8.56e-01 80 chr12:89740283-89740363 2.96e-01 80 chr20:61317622-61317702 1.16e-04 43_[+4(4.88e-05)]_29 chr18:23570604-23570684 2.41e-02 80 chr3:15342024-15342104 1.31e-04 1_[+2(8.52e-05)]_[+3(7.01e-05)]_19_\ [+5(3.02e-05)]_28_[+3(4.18e-05)] chr20:61371714-61371794 4.74e-03 80 chr17:61524461-61524541 1.92e-04 13_[+2(1.45e-05)]_59 chr15:91590904-91590984 8.09e-02 80 chr11:12111727-12111807 4.22e-03 59_[+4(1.61e-05)]_13 chr12:1772043-1772123 3.34e-03 69_[+5(4.55e-05)]_3 chr6:143419312-143419392 1.67e-05 [+1(3.19e-05)]_38_[+2(9.99e-05)]_26 chr22:32026471-32026551 2.29e-07 6_[+4(4.88e-05)]_10_[+4(4.88e-05)]_\ 31_[+2(1.45e-05)]_9 chr1:154462950-154463030 1.87e-01 80 chr5:42995194-42995274 3.63e-01 80 chr16:23914158-23914238 8.50e-01 80 chr8:29387484-29387564 1.23e-04 23_[+2(1.45e-05)]_4_[+2(2.85e-05)]_\ 19_[+5(4.55e-05)]_10 chr1:40525284-40525364 6.31e-03 44_[+1(3.19e-05)]_28 chr20:48964738-48964818 7.12e-03 72_[+4(1.61e-05)] chr10:45899648-45899728 3.82e-02 80 chr1:92178761-92178841 1.95e-03 80 chr9:134391496-134391576 2.97e-04 9_[+4(1.61e-05)]_9_[+4(1.61e-05)]_\ 32_[+4(1.61e-05)]_6 chr20:56008156-56008236 8.91e-02 80 chr3:172230363-172230443 1.24e-05 49_[+5(6.04e-05)]_4_[+3(4.18e-05)]_\ 11 chr6:30477093-30477173 1.23e-03 5_[+2(5.67e-05)]_17_[+3(7.01e-05)]_\ 42 chr6:107297603-107297683 1.62e-02 25_[+2(9.99e-05)]_47 chr10:12824613-12824693 5.72e-05 44_[+4(1.61e-05)]_28 chr10:23305685-23305765 2.39e-02 80 chr21:46300947-46301027 1.84e-01 80 chr10:70975362-70975442 4.70e-02 23_[+1(8.06e-05)]_49 chr20:21603853-21603933 8.95e-04 10_[+3(1.37e-05)]_46_[+2(2.85e-05)]_\ 8 chr11:13112059-13112139 4.03e-03 33_[+1(8.06e-05)]_39 chr19:18429159-18429239 1.04e-05 20_[+4(1.61e-05)]_6_[+1(8.06e-05)]_\ 38 chr14:74210316-74210396 4.26e-07 34_[+3(1.37e-05)]_38 chr16:71021155-71021235 5.96e-01 80 chr11:121979058-12197913 3.11e-02 80 chr17:79283169-79283249 1.85e-05 29_[+3(2.77e-05)]_[+1(3.19e-05)]_35 chr10:32266438-32266518 8.73e-03 52_[+1(3.19e-05)]_12_[+4(6.47e-05)] chr14:20958863-20958943 4.69e-02 80 chr8:142183500-142183580 6.13e-03 80 chr11:46340330-46340410 2.53e-02 80 chr1:231113233-231113313 4.88e-07 27_[+4(1.61e-05)]_2_[+2(9.99e-05)]_\ 35 chr12:50093165-50093245 1.25e-01 80 chr20:37433757-37433837 6.13e-05 31_[+3(1.37e-05)]_41 chr4:73419411-73419491 5.23e-03 12_[+1(8.06e-05)]_60 chr13:74339840-74339920 7.30e-02 80 chr2:69001940-69002020 3.17e-03 80 chr8:142424982-142425062 1.81e-05 8_[+5(4.55e-05)]_56_[+4(1.61e-05)] chr16:23913954-23914034 1.81e-01 80 chr22:37309562-37309642 8.88e-02 43_[+1(8.06e-05)]_29 chr5:141703507-141703587 1.24e-04 38_[+4(3.26e-05)]_34 chr11:10603265-10603345 2.81e-03 80 chr5:134817203-134817283 1.16e-03 39_[+2(9.99e-05)]_25_[+3(4.18e-05)] chr10:103454660-10345474 4.52e-02 40_[+1(8.06e-05)]_32 chr7:106505683-106505763 2.78e-04 25_[+1(4.78e-05)]_14_[+4(1.61e-05)]_\ 25 chr1:198526194-198526274 3.19e-04 14_[+2(1.45e-05)]_58 chr1:51899433-51899513 5.11e-04 43_[+1(3.19e-05)]_29 chr12:47754626-47754706 1.13e-06 32_[+3(8.44e-05)]_[+5(6.04e-05)]_32 chr2:149400811-149400891 1.87e-05 16_[+3(1.37e-05)]_1_[+3(2.77e-05)]_\ 5_[+5(4.55e-05)]_[+2(1.45e-05)]_26 chr9:140388685-140388765 2.83e-02 54_[+4(4.88e-05)]_18 chr5:10787133-10787213 4.01e-03 12_[+4(4.88e-05)]_[+1(3.19e-05)]_12_\ [+4(1.61e-05)]_32 chr18:830567-830647 1.05e-02 80 chr12:51018940-51019020 5.15e-02 80 chr3:154745038-154745118 2.76e-05 3_[+1(8.06e-05)]_23_[+4(4.88e-05)]_\ 17_[+2(4.26e-05)]_13 chr3:142425649-142425729 1.02e-01 80 chr3:99564352-99564432 1.19e-03 20_[+4(1.61e-05)]_52 chr20:1396796-1396876 4.33e-01 80 chr12:11951947-11952027 2.31e-05 24_[+2(4.26e-05)]_9_[+1(3.19e-05)]_\ 31 chr2:122369472-122369552 4.13e-04 6_[+3(1.37e-05)]_31_[+3(1.37e-05)]_\ 27 chr8:11314290-11314370 1.06e-02 12_[+2(8.52e-05)]_39_[+5(3.02e-05)]_\ 13 chr15:81292164-81292244 2.28e-05 15_[+5(9.02e-05)]_15_[+4(1.61e-05)]_\ 34 chr10:104561895-10456197 1.40e-01 80 chr19:55538650-55538730 1.22e-01 28_[+1(8.06e-05)]_44 chr6:150614747-150614827 2.54e-01 80 chr3:42888796-42888876 1.37e-08 37_[+3(1.37e-05)]_35 chr10:4375808-4375888 1.18e-01 80 chr10:6625541-6625621 5.25e-03 80 chr6:16858588-16858668 5.52e-01 80 chr19:42387215-42387295 1.56e-04 36_[+1(3.19e-05)]_36 chr6:135628050-135628130 1.28e-03 44_[+4(1.61e-05)]_28 chr15:90602841-90602921 1.55e-01 80 chr7:100485365-100485445 5.19e-07 10_[+2(1.45e-05)]_4_[+2(9.99e-05)]_\ 13_[+1(3.19e-05)]_29 chr20:54994214-54994294 4.10e-03 28_[+3(2.77e-05)]_44 chr11:3853148-3853228 8.16e-02 80 chr6:147271560-147271640 3.13e-04 40_[+3(9.86e-05)]_32 chr4:186123758-186123838 6.45e-02 80 chr1:160635448-160635528 1.67e-03 36_[+4(1.61e-05)]_36 chr1:243428197-243428277 1.60e-03 1_[+3(1.37e-05)]_71 chr2:16806630-16806710 5.61e-05 31_[+3(1.37e-05)]_8_[+2(1.45e-05)]_\ 17_[+2(5.67e-05)] chr15:89560784-89560864 8.90e-04 80 chr14:55368925-55369005 1.20e-02 [+1(8.06e-05)]_25_[+1(3.19e-05)]_39 chr19:6892147-6892227 4.67e-03 28_[+3(1.37e-05)]_44 chr16:20915933-20916013 1.18e-05 17_[+4(4.88e-05)]_34_[+3(7.01e-05)]_\ 13 chr7:157283417-157283497 2.54e-03 50_[+1(3.19e-05)]_22 chr12:6446470-6446550 1.15e-02 80 chrX:153946257-153946337 1.81e-04 47_[+2(1.45e-05)]_25 chr2:230786093-230786173 7.77e-02 80 chr3:33049900-33049980 6.55e-03 21_[+2(5.67e-05)]_25_[+3(9.86e-05)]_\ 18 chr12:93362384-93362464 4.86e-04 24_[+2(5.67e-05)]_48 chr7:67383321-67383401 1.89e-04 4_[+2(1.45e-05)]_25_[+2(1.45e-05)]_\ 25_[+2(1.45e-05)]_2 chr6:41907424-41907504 6.73e-04 80 chr12:1771277-1771357 5.68e-01 80 chr11:56894370-56894450 8.01e-03 80 chr15:43398318-43398398 3.53e-03 80 chr2:103035256-103035336 2.49e-02 7_[+2(8.52e-05)]_65 chr2:121010821-121010901 3.73e-03 36_[+4(1.61e-05)]_27_[+4(1.61e-05)]_\ 1 chr2:179542427-179542507 6.77e-07 18_[+1(3.19e-05)]_34_[+1(3.19e-05)]_\ 12 chr20:55004767-55004847 3.03e-02 80 chr16:55787135-55787215 1.51e-02 10_[+2(5.67e-05)]_62 chr4:38320918-38320998 5.97e-03 25_[+1(3.19e-05)]_25_[+1(4.78e-05)]_\ 14 chr1:113162869-113162949 1.10e-03 60_[+4(1.61e-05)]_12 chr21:34673487-34673567 2.07e-03 80 chr2:47406602-47406682 5.81e-03 10_[+1(3.19e-05)]_7_[+4(3.26e-05)]_\ 47 chr2:112813882-112813962 3.97e-02 80 chr14:81882684-81882764 1.41e-04 [+2(1.45e-05)]_43_[+2(2.85e-05)]_21 chr6:45463695-45463775 3.53e-03 49_[+1(8.06e-05)]_8_[+1(8.06e-05)]_\ 7 chrX:2547642-2547722 3.78e-03 28_[+4(1.61e-05)]_20_[+4(1.61e-05)]_\ 16 chr1:206845512-206845592 3.89e-01 80 chr3:15381551-15381631 2.57e-03 51_[+4(1.61e-05)]_21 chr19:55538850-55538930 5.02e-06 4_[+4(1.61e-05)]_51_[+2(8.52e-05)]_\ 9 chr9:101820338-101820418 5.92e-02 53_[+1(8.06e-05)]_19 chr9:86237823-86237903 2.28e-07 29_[+3(1.37e-05)]_3_[+5(4.55e-05)]_\ 4_[+3(4.18e-05)]_20 chr19:35453455-35453535 3.02e-03 5_[+1(3.19e-05)]_25_[+1(8.06e-05)]_\ 23_[+1(8.06e-05)]_3 chr19:51631152-51631232 1.24e-01 80 chr3:151589556-151589636 3.23e-04 21_[+2(2.85e-05)]_51 chr16:57834556-57834636 3.65e-05 16_[+5(3.02e-05)]_29_[+3(1.37e-05)]_\ 19 chr10:5529631-5529711 6.47e-04 54_[+4(1.61e-05)]_18 chr5:43040483-43040563 2.00e-01 80 chr8:130249987-130250067 6.18e-03 34_[+1(3.19e-05)]_38 chr2:38893829-38893909 1.23e-05 4_[+3(4.18e-05)]_68 chr1:203258745-203258825 3.60e-03 [+2(2.85e-05)]_72 chr12:3206742-3206822 2.91e-05 17_[+4(3.26e-05)]_8_[+1(3.19e-05)]_\ 39 chr10:89879994-89880074 2.49e-03 15_[+3(7.01e-05)]_25_[+3(7.01e-05)]_\ 8_[+3(8.44e-05)]_8 chr1:235460176-235460256 1.28e-03 9_[+1(3.19e-05)]_63 chr16:78462229-78462309 1.32e-03 42_[+4(1.61e-05)]_30 chr8:13082135-13082215 2.18e-03 29_[+4(1.61e-05)]_13_[+1(4.78e-05)]_\ 22 chr16:20922214-20922294 1.26e-02 80 chr17:56416716-56416796 2.46e-04 51_[+4(1.61e-05)]_21 chr17:57611230-57611310 7.06e-03 29_[+1(3.19e-05)]_5_[+4(3.26e-05)]_\ 30 chr14:91668863-91668943 4.64e-02 38_[+1(8.06e-05)]_10_[+1(8.06e-05)]_\ 16 chr12:131239134-13123921 2.03e-04 5_[+2(2.85e-05)]_10_[+2(1.45e-05)]_\ 7_[+2(1.45e-05)]_7_[+3(8.44e-05)]_10_[+2(2.85e-05)]_1 chr3:141401058-141401138 6.74e-04 56_[+3(1.37e-05)]_8_[+3(7.01e-05)] chr1:160635648-160635728 4.47e-01 80 chr1:183962404-183962484 9.53e-06 25_[+3(1.37e-05)]_47 chr15:90732332-90732412 3.30e-05 14_[+2(1.45e-05)]_3_[+3(7.01e-05)]_\ 8_[+2(1.45e-05)]_9_[+2(8.52e-05)]_14 chr1:173657678-173657758 1.34e-02 16_[+4(3.26e-05)]_15_[+1(8.06e-05)]_\ 13_[+4(3.26e-05)]_12 chr6:154676270-154676350 4.44e-02 80 chr16:23838004-23838084 1.07e-02 38_[+1(3.19e-05)]_34 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************