******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETV1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:53552774-53552854 1.0000 80 chr1:51899450-51899530 1.0000 80 chr8:91013167-91013247 1.0000 80 chr12:89629567-89629647 1.0000 80 chr7:115851169-115851249 1.0000 80 chr8:108317527-108317607 1.0000 80 chr5:89953758-89953838 1.0000 80 chr11:3853197-3853277 1.0000 80 chr7:149473633-149473713 1.0000 80 chr5:95059381-95059461 1.0000 80 chrX:153192353-153192433 1.0000 80 chr10:72124377-72124457 1.0000 80 chr5:112267262-112267342 1.0000 80 chr17:71007389-71007469 1.0000 80 chr21:46255161-46255241 1.0000 80 chr9:95826784-95826864 1.0000 80 chr2:109883585-109883665 1.0000 80 chr10:74036824-74036904 1.0000 80 chr12:498459-498539 1.0000 80 chr5:141852028-141852108 1.0000 80 chr2:26074903-26074983 1.0000 80 chr11:46148868-46148948 1.0000 80 chr17:38593605-38593685 1.0000 80 chr11:63299135-63299215 1.0000 80 chr19:13345523-13345603 1.0000 80 chr17:47910308-47910388 1.0000 80 chr19:19256935-19257015 1.0000 80 chr11:126350743-12635082 1.0000 80 chr10:88648877-88648957 1.0000 80 chr11:46448298-46448378 1.0000 80 chr12:29396211-29396291 1.0000 80 chr11:67030320-67030400 1.0000 80 chrX:39710165-39710245 1.0000 80 chr6:36095454-36095534 1.0000 80 chr22:22875413-22875493 1.0000 80 chr20:35185046-35185126 1.0000 80 chr4:187124714-187124794 1.0000 80 chr9:95882311-95882391 1.0000 80 chr11:113464569-11346464 1.0000 80 chr9:99337350-99337430 1.0000 80 chr19:35453452-35453532 1.0000 80 chr7:66594235-66594315 1.0000 80 chr19:34818908-34818988 1.0000 80 chr7:632125-632205 1.0000 80 chr4:185276487-185276567 1.0000 80 chrX:49023741-49023821 1.0000 80 chr14:78914945-78915025 1.0000 80 chr12:47754643-47754723 1.0000 80 chr11:118979432-11897951 1.0000 80 chr3:128202094-128202174 1.0000 80 chr3:195837362-195837442 1.0000 80 chr7:106012184-106012264 1.0000 80 chr6:30650472-30650552 1.0000 80 chr11:67055899-67055979 1.0000 80 chr6:147092300-147092380 1.0000 80 chr13:41579134-41579214 1.0000 80 chr15:89618069-89618149 1.0000 80 chr6:20292068-20292148 1.0000 80 chr8:144371757-144371837 1.0000 80 chr6:31702597-31702677 1.0000 80 chr8:22926682-22926762 1.0000 80 chr4:15651718-15651798 1.0000 80 chr19:7702607-7702687 1.0000 80 chr3:10284163-10284243 1.0000 80 chr6:147271561-147271641 1.0000 80 chr1:23429976-23430056 1.0000 80 chr9:99019227-99019307 1.0000 80 chr12:11951965-11952045 1.0000 80 chr12:96795182-96795262 1.0000 80 chr12:9917538-9917618 1.0000 80 chr1:212687543-212687623 1.0000 80 chr19:45674697-45674777 1.0000 80 chr1:19835575-19835655 1.0000 80 chr12:40019920-40020000 1.0000 80 chr11:69064670-69064750 1.0000 80 chr5:139555332-139555412 1.0000 80 chr20:21599452-21599532 1.0000 80 chr1:142890987-142891067 1.0000 80 chr13:114103526-11410360 1.0000 80 chr14:21512582-21512662 1.0000 80 chr16:68113663-68113743 1.0000 80 chr19:16197370-16197450 1.0000 80 chr2:69076958-69077038 1.0000 80 chr12:50056937-50057017 1.0000 80 chr13:96090662-96090742 1.0000 80 chr1:182399940-182400020 1.0000 80 chr21:43472102-43472182 1.0000 80 chr9:136009308-136009388 1.0000 80 chr1:227015847-227015927 1.0000 80 chr1:26109416-26109496 1.0000 80 chr5:42876680-42876760 1.0000 80 chr16:70438359-70438439 1.0000 80 chr8:91986681-91986761 1.0000 80 chr12:123591725-12359180 1.0000 80 chr22:21213141-21213221 1.0000 80 chr7:135614613-135614693 1.0000 80 chr6:88441652-88441732 1.0000 80 chr4:8193308-8193388 1.0000 80 chr3:154745038-154745118 1.0000 80 chr2:209795024-209795104 1.0000 80 chr16:16092525-16092605 1.0000 80 chr5:60116676-60116756 1.0000 80 chr4:54775024-54775104 1.0000 80 chr10:69550820-69550900 1.0000 80 chr11:77010753-77010833 1.0000 80 chr1:167028492-167028572 1.0000 80 chr17:76123435-76123515 1.0000 80 chr7:76178499-76178579 1.0000 80 chr5:66300354-66300434 1.0000 80 chr5:141736612-141736692 1.0000 80 chr4:68389072-68389152 1.0000 80 chr21:30204574-30204654 1.0000 80 chr6:105153122-105153202 1.0000 80 chr17:3877666-3877746 1.0000 80 chr2:227637486-227637566 1.0000 80 chr11:108093748-10809382 1.0000 80 chr1:40525279-40525359 1.0000 80 chr5:148810003-148810083 1.0000 80 chr11:34831270-34831350 1.0000 80 chr1:161592059-161592139 1.0000 80 chr17:28054040-28054120 1.0000 80 chr12:102874361-10287444 1.0000 80 chr7:1105500-1105580 1.0000 80 chr7:72349796-72349876 1.0000 80 chr1:36181213-36181293 1.0000 80 chr8:107072704-107072784 1.0000 80 chr21:45627997-45628077 1.0000 80 chr3:4872971-4873051 1.0000 80 chr12:25104868-25104948 1.0000 80 chr14:71597502-71597582 1.0000 80 chr11:124746324-12474640 1.0000 80 chr5:141742480-141742560 1.0000 80 chr4:186123766-186123846 1.0000 80 chr5:131450420-131450500 1.0000 80 chr11:120215210-12021529 1.0000 80 chr3:155052788-155052868 1.0000 80 chr1:112864802-112864882 1.0000 80 chr19:610873-610953 1.0000 80 chr22:22417667-22417747 1.0000 80 chr1:16971117-16971197 1.0000 80 chr16:75109281-75109361 1.0000 80 chr20:42588001-42588081 1.0000 80 chr12:9519934-9520014 1.0000 80 chr2:48338494-48338574 1.0000 80 chr6:43855816-43855896 1.0000 80 chr2:65663473-65663553 1.0000 80 chr22:18403201-18403281 1.0000 80 chr12:124744408-12474448 1.0000 80 chr12:47670777-47670857 1.0000 80 chr2:11970473-11970553 1.0000 80 chr18:20840397-20840477 1.0000 80 chr14:91267758-91267838 1.0000 80 chr6:35265528-35265608 1.0000 80 chr4:140216959-140217039 1.0000 80 chr17:13210098-13210178 1.0000 80 chr2:65590795-65590875 1.0000 80 chr15:90944221-90944301 1.0000 80 chrX:40032114-40032194 1.0000 80 chr22:19976537-19976617 1.0000 80 chr6:26389611-26389691 1.0000 80 chr6:21987815-21987895 1.0000 80 chr7:73149201-73149281 1.0000 80 chrX:65235194-65235274 1.0000 80 chr1:85710570-85710650 1.0000 80 chr1:43222760-43222840 1.0000 80 chr20:45946112-45946192 1.0000 80 chr17:66434310-66434390 1.0000 80 chr1:40506397-40506477 1.0000 80 chr6:131314686-131314766 1.0000 80 chr17:45955136-45955216 1.0000 80 chr4:86501885-86501965 1.0000 80 chr20:49546014-49546094 1.0000 80 chr1:41341539-41341619 1.0000 80 chr6:33398777-33398857 1.0000 80 chr22:43355888-43355968 1.0000 80 chr3:16351241-16351321 1.0000 80 chr6:144263393-144263473 1.0000 80 chr22:21921888-21921968 1.0000 80 chr6:147235771-147235851 1.0000 80 chr12:93638088-93638168 1.0000 80 chr17:46555813-46555893 1.0000 80 chr8:22596898-22596978 1.0000 80 chr19:42954603-42954683 1.0000 80 chr11:32442505-32442585 1.0000 80 chr17:73854926-73855006 1.0000 80 chr20:31253262-31253342 1.0000 80 chr10:104359628-10435970 1.0000 80 chr6:33548009-33548089 1.0000 80 chr17:62502854-62502934 1.0000 80 chr1:36839537-36839617 1.0000 80 chr15:62411742-62411822 1.0000 80 chr17:27253196-27253276 1.0000 80 chr17:80158836-80158916 1.0000 80 chr3:5236592-5236672 1.0000 80 chr3:43435610-43435690 1.0000 80 chr1:22345650-22345730 1.0000 80 chr5:148941575-148941655 1.0000 80 chr17:60759097-60759177 1.0000 80 chr13:48736127-48736207 1.0000 80 chr8:30601870-30601950 1.0000 80 chr19:45927104-45927184 1.0000 80 chr20:46768370-46768450 1.0000 80 chr19:52160249-52160329 1.0000 80 chr2:11272914-11272994 1.0000 80 chr20:361525-361605 1.0000 80 chr7:99588737-99588817 1.0000 80 chr19:8258979-8259059 1.0000 80 chr5:175123610-175123690 1.0000 80 chr22:17847989-17848069 1.0000 80 chr3:152939731-152939811 1.0000 80 chr17:73068212-73068292 1.0000 80 chr2:209794305-209794385 1.0000 80 chr12:65066813-65066893 1.0000 80 chr4:170543510-170543590 1.0000 80 chr17:74176079-74176159 1.0000 80 chr2:38770137-38770217 1.0000 80 chr11:119312074-11931215 1.0000 80 chr2:191746777-191746857 1.0000 80 chr6:8064751-8064831 1.0000 80 chr1:110438602-110438682 1.0000 80 chr5:148608626-148608706 1.0000 80 chr6:158830617-158830697 1.0000 80 chr22:22378219-22378299 1.0000 80 chr17:65362654-65362734 1.0000 80 chr19:45927693-45927773 1.0000 80 chr6:99842014-99842094 1.0000 80 chr8:91658695-91658775 1.0000 80 chr19:1905745-1905825 1.0000 80 chr7:77464037-77464117 1.0000 80 chr5:5598866-5598946 1.0000 80 chr20:2082881-2082961 1.0000 80 chr5:43772995-43773075 1.0000 80 chr16:3018899-3018979 1.0000 80 chr5:159066169-159066249 1.0000 80 chr10:44094869-44094949 1.0000 80 chr1:19803523-19803603 1.0000 80 chr4:187112597-187112677 1.0000 80 chr11:82719098-82719178 1.0000 80 chr2:44105148-44105228 1.0000 80 chr6:74098990-74099070 1.0000 80 chr5:176038534-176038614 1.0000 80 chr18:812950-813030 1.0000 80 chr1:51895696-51895776 1.0000 80 chr17:72864748-72864828 1.0000 80 chr15:76050789-76050869 1.0000 80 chr2:178937433-178937513 1.0000 80 chr7:153120110-153120190 1.0000 80 chr17:72459800-72459880 1.0000 80 chr12:56584030-56584110 1.0000 80 chr3:128251952-128252032 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ETV1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETV1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.23 C 0.268 G 0.265 T 0.237 Background letter frequencies (from file dataset with add-one prior applied): A 0.23 C 0.268 G 0.265 T 0.237 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTTCCKGT MEME-1 width = 8 sites = 138 llr = 1046 E-value = 4.3e-101 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::::2 pos.-specific C 7::aa::2 probability G :::::491 matrix T 38a::615 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** * Relative 1.3 **** * Entropy 1.1 ****** (10.9 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTCCTGT consensus TA G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:812950-813030 44 1.61e-05 CCCCCAGGAG CTTCCTGT TGACTGTAGG chr7:77464037-77464117 63 1.61e-05 atctgctGTA CTTCCTGT ACCATATATT chr3:43435610-43435690 47 1.61e-05 agacaacatc cttcctgt ttggccTCCC chr3:5236592-5236672 53 1.61e-05 TGCCTCCTGA CTTCCTGT GAGCATTCTT chr17:80158836-80158916 61 1.61e-05 GTCCTCCTTC CTTCCTGT CTCCTCAAAC chr15:62411742-62411822 52 1.61e-05 TTGGTCCTGA CTTCCTGT TATTGCATCA chr19:42954603-42954683 48 1.61e-05 CTGACAGTTA CTTCCTGT CTTTGTGGGC chr6:147235771-147235851 39 1.61e-05 TTTTTAATCT CTTCCTGT CAGCTGGCCA chr2:11970473-11970553 57 1.61e-05 CAAGTGGCCT CTTCCTGT GACTCATTCT chr12:124744408-12474448 47 1.61e-05 TAAGTTCATC CTTCCTGT TCACCGTTCA chr2:227637486-227637566 52 1.61e-05 GTTACCACTG CTTCCTGT TTTAAGTATC chr17:3877666-3877746 17 1.61e-05 CTTGAGGCAA CTTCCTGT CCTCTCCCCG chr2:209795024-209795104 22 1.61e-05 TATGAGTTTC CTTCCTGT AATTAGGGCT chr3:154745038-154745118 5 1.61e-05 AATG CTTCCTGT CTCTCTCTTC chr6:88441652-88441732 27 1.61e-05 AGGAACAATA CTTCCTGT ATCCTCTTCT chr8:91986681-91986761 24 1.61e-05 cctttaagtg cttcctgt cctcgatgct chr13:96090662-96090742 35 1.61e-05 TCTTGACCAG CTTCCTGT GTTCCTGACT chr20:21599452-21599532 11 1.61e-05 ctactttgtg cttcctgt ttgtggtcaa chr1:212687543-212687623 20 1.61e-05 AGGAGGAGGA CTTCCTGT GGAGGGCGCA chr12:11951965-11952045 25 1.61e-05 ATCTTGGGAA CTTCCTGT GGAGGAGTGC chr6:31702597-31702677 42 1.61e-05 CTCCGGCTTC CTTCCTGT CAAGGATGTG chr6:30650472-30650552 44 1.61e-05 CCACCCCAGG CTTCCTGT TTGGGCGATC chr19:35453452-35453532 43 1.61e-05 agcaatctgg cttcctgt gggtctgaca chr17:47910308-47910388 45 1.61e-05 TAATAGCCTT CTTCCTGT GTGGTATCTG chr5:112267262-112267342 25 1.61e-05 TCTCTTAATG CTTCCTGT CTCTCCTCAG chr5:95059381-95059461 47 1.61e-05 CTCTCCTTTA CTTCCTGT CTCGCAGCCT chr12:56584030-56584110 41 3.41e-05 CGGTACCCTG CTTCCGGT TCCCGCACGC chr19:1905745-1905825 9 3.41e-05 TCCAGCTG CTTCCGGT GGCCCTTCCT chr2:65663473-65663553 24 3.41e-05 TTATCAGTTC CTTCCGGT CTCCCCGAGC chr7:72349796-72349876 49 3.41e-05 AGGAGGCGGA CTTCCGGT GCACTCCTGC chr7:76178499-76178579 68 3.41e-05 GGGAGGCGGA CTTCCGGT GCACT chr7:106012184-106012264 52 3.41e-05 tgcaatagca cttccggt ttccagggta chr11:126350743-12635082 40 3.41e-05 GTAATCCCAG CTTCCGGT TTCCTCACGT chr10:72124377-72124457 30 3.41e-05 CTGGGCTCGG CTTCCGGT CCTTGGCTTG chr1:51895696-51895776 28 6.39e-05 ACAGCTCTTC TTTCCTGT CTGGCTTGTG chr5:5598866-5598946 38 6.39e-05 ggctgtgtca cttcctga tgatgcaatt chr4:170543510-170543590 11 6.39e-05 AGGCTTTCCA TTTCCTGT TGTGACATGT chr3:16351241-16351321 14 6.39e-05 ctacaacttg tttcctgt gtgactcatt chr22:43355888-43355968 35 6.39e-05 CATTTCATCA TTTCCTGT TGGCTGCCGA chrX:65235194-65235274 53 6.39e-05 CTCATTTCTG TTTCCTGT TGAAGACACC chr20:42588001-42588081 26 6.39e-05 ACAAATACCA TTTCCTGT GTTATCTGGT chr3:155052788-155052868 38 6.39e-05 AACCTTTCTG TTTCCTGT CCAGGAAGCG chr11:34831270-34831350 59 6.39e-05 aacaggctgg cttcctga actgtttatt chr5:60116676-60116756 9 6.39e-05 GACTGCTA CTTCCTGA GCTTTATCAT chr12:50056937-50057017 55 6.39e-05 CCCCTTCTCA TTTCCTGT CTGAGTCTAT chr11:69064670-69064750 15 6.39e-05 ccctgctgtg cttccTGA GGAGCAGGCC chr6:36095454-36095534 38 6.39e-05 GCCTGAGTCA CTTCCTGA CCCTTGCTCA chr1:51899450-51899530 28 6.39e-05 GTGGCTTTAA CTTCCTGA TGTTCTTGCT chr19:610873-610953 68 8.21e-05 ggggaggatc cttcctgc ctctt chr1:40525279-40525359 51 8.21e-05 AACACAAGAA CTTCCTGC TTGTGCAATA chr16:70438359-70438439 45 8.21e-05 tcagatacca cttcctgc ccatcagggt chr9:99019227-99019307 73 8.21e-05 tcccccttct cttcctgc chrX:153192353-153192433 24 8.21e-05 GCGGTTACCA CTTCCTGC TGCCGGAAGA chr5:176038534-176038614 28 1.31e-04 CTTCCTCACA TTTCCGGT CCTGAAAATT chr6:99842014-99842094 64 1.31e-04 TCCCACCTCT TTTCCGGT CCCTCCCGA chr17:73068212-73068292 51 1.31e-04 AACACAGCCT CTTCCGGA GCCTAGTAAT chr8:30601870-30601950 66 1.31e-04 TGCCCCCCCA CTTCCGGA GCTGACT chr5:148941575-148941655 42 1.31e-04 CCTAAGAACA CATCCTGT TAACTCTTAA chr17:27253196-27253276 28 1.31e-04 TTAATCATCT CATCCTGT TTCTGCAACC chr6:144263393-144263473 18 1.31e-04 GAAGTCCTTG CATCCTGT GTGGACCACC chr1:41341539-41341619 66 1.31e-04 gctgctgctg cATCCTGt gtctgag chr20:49546014-49546094 36 1.31e-04 CTGTGAAGCA CATCCTGT TCTAGCTCGG chr1:161592059-161592139 54 1.31e-04 CCCTATCTGG TTTCCGGT CTTCAGCTCT chr5:148810003-148810083 27 1.31e-04 CGCCAGAGGG TTTCCGGT ACTTTTCAGG chr7:135614613-135614693 33 1.31e-04 GAGAGTCATT CTTCCGGA GTTATCAGTC chr9:136009308-136009388 38 1.31e-04 CTCGGCACCA CATCCTGT CCAGGAAGCA chr1:142890987-142891067 13 1.31e-04 GGGTGCCGCA CTTCCGGA GGAAAATGGC chr1:19835575-19835655 35 1.31e-04 ttctttacca catcctgt tttatcagca chr15:89618069-89618149 31 1.31e-04 ATCTTGCTGT CATCCTGT TTCCTGCCTC chr17:72459800-72459880 43 1.51e-04 GAATGTGCAA CTTCCGGC AAAAAACTCT chr15:76050789-76050869 38 1.51e-04 CTGTGGTCCG CTTCCGGC CTCACTCGAG chr19:45927104-45927184 67 1.51e-04 GCTCGCAGCA CTTCCGGC CTCTCT chr17:13210098-13210178 59 1.51e-04 GGTTACATAA CTTCCGGC CCACGGATGA chr3:4872971-4873051 33 1.51e-04 GGTCAGCCTG CTTCCGGC TGTGGCTTCA chr7:99588737-99588817 36 1.83e-04 AGATAACGGT CATCCGGT CTTCCTCGCA chr17:60759097-60759177 39 1.83e-04 TTCATTGCTG CATCCGGT GGAGGCCCAG chr11:32442505-32442585 9 1.83e-04 CTAATAGG TTTCCTGA GGCCAGAGAT chr20:45946112-45946192 50 1.83e-04 CCTGCCCCCA CATCCGGT GCCTGAGTCA chr6:35265528-35265608 48 1.83e-04 GCCGTTTGCA TTTCCTGA AACCGGATCT chr8:107072704-107072784 44 1.83e-04 tcgaagcaga catccggt ccagcatgac chr16:16092525-16092605 45 1.83e-04 TTGCTCAGCG TTTCCTGA CCTCTCCTTC chr17:74176079-74176159 52 2.13e-04 ACAGGAAGAG CTTCCTTT TCTGTCTTGC chr22:22417667-22417747 9 2.13e-04 AATTTCTG TTTCCTGC CATGATGCAA chr5:131450420-131450500 46 2.13e-04 aaaccacatc cttccttt ttccaaccac chr17:28054040-28054120 22 2.13e-04 GTCTATATCA TTTCCTGC CAGGCATCAA chr5:42876680-42876760 31 2.13e-04 TGTCATATTG CTTCCTTT CTAGCAGCGA chr13:41579134-41579214 73 2.13e-04 atgtcaagta tttcctgc chr12:29396211-29396291 42 2.13e-04 agcaatctgg tttcctgc aagtctgact chr19:45927693-45927773 33 2.31e-04 tccggaaggg cttcctgg aggaagggac chr1:110438602-110438682 70 2.31e-04 TTCCGGCCAG CTTCCTGG GTA chr11:119312074-11931215 33 2.31e-04 cgagggctta cttcctgg cttgtagact chr10:104359628-10435970 41 2.31e-04 CCCTTCCTTC CTTCCTGG AGCCTGGTCT chr12:47754643-47754723 38 2.31e-04 GGGGAGGTTC CTTCCTGG AGATGTTTTG chr4:185276487-185276567 27 2.31e-04 GTGGACAGGA CTTCCTGG TGACTCTGGG chr19:8258979-8259059 62 2.76e-04 CCCGCACTCA TTTCCGGA GGATGCCCCA chr20:46768370-46768450 32 2.76e-04 ccttctatct tatcctgt aactaagaat chr13:48736127-48736207 7 2.76e-04 AGACCA TTTCCGGA GACCAGCTTG chr17:46555813-46555893 32 2.76e-04 CACAGGCCAG TTTCCGGA AGTCTGCATG chrX:49023741-49023821 27 2.76e-04 GCTGTCACCA CATCCTGA GCACTCGGCC chr12:498459-498539 5 2.76e-04 GACT TTTCCGGA AGTTACCGTG chr7:149473633-149473713 43 2.76e-04 ACAGGCCGGA CATCCTGA GAGTGGGGAG chr3:128251952-128252032 31 3.27e-04 cagtttctga cttccgtt tcttatcttc chr8:22596898-22596978 47 3.27e-04 GCACCCAGTC TTTCCGGC TGGGTGGCTG chr18:20840397-20840477 69 3.27e-04 CACTCAGACG TTTCCGGC TTAG chr12:9519934-9520014 43 3.27e-04 CTATCAGCAG CTTCCGTT AATTCCGTTG chr7:1105500-1105580 36 3.27e-04 CCAGCCGCGG TTTCCGGC CTCAAGGGCA chr1:26109416-26109496 48 3.27e-04 CCCCAGGTTG CTTCCGTT CTGGGAACCG chr1:23429976-23430056 42 3.27e-04 agttactcag cttccgtt caaacacttc chr6:147092300-147092380 50 3.27e-04 GGATGCTGTG TTTCCGGC CCAGTTCCCT chr11:63299135-63299215 23 3.27e-04 gttctgacca catcctgc tccaatcaac chr8:108317527-108317607 57 3.27e-04 GTATATACCA CATCCTGC CCTCCCTTTT chr11:3853197-3853277 33 3.48e-04 GACAGCGTAG CTTCCGGG CTGGGAAGGG chr4:187112597-187112677 27 3.80e-04 CCTGACCCCG CATCCGGA GGCGGCCGGA chr15:90944221-90944301 34 3.80e-04 AAAGTGAGAA CATCCGGA AGTGATTCAT chr2:65590795-65590875 36 3.80e-04 ATAAACCACA CATCCGGA CAGCAAGGAC chr3:195837362-195837442 52 3.80e-04 cgagccacca catccggA TAAAGGAAGT chr11:46148868-46148948 46 3.80e-04 cattgccaaa tatccGGT GTGTACAGGG chr21:46255161-46255241 37 3.80e-04 CTCCCGGCCA CATCCGGA CACTCCCTGA chr2:44105148-44105228 23 4.26e-04 TGCTCAGCTA CATCCGGC CCAGGGTGCT chr12:65066813-65066893 19 4.26e-04 AGCCTGTTCA TTTCCTTT CTCCGGAAAC chr9:95882311-95882391 36 4.26e-04 TGTTGGCCAA CATCCGGC TGCTGGTGTG chr6:147271561-147271641 59 4.58e-04 TCAGAGCAAG TTTCCTGG ATAGAGCTGT chr7:66594235-66594315 19 4.58e-04 atgtcaaatg gttcctgt ttccctcccc chr17:72864748-72864828 69 4.88e-04 AGGtttcctc cttccttc cttc chr14:21512582-21512662 73 4.88e-04 GCTGCCAGAG CTTCCTTC chr22:17847989-17848069 29 6.00e-04 GTCTTGTTGA TTTCCGGG GCTTGGCAGT chr22:19976537-19976617 18 6.00e-04 TCCGAGGACA GTTCCGGT CTGGGAGGGT chr22:18403201-18403281 41 6.00e-04 GCTCAGACGC GTTCCGGT CTTATCTGGC chr11:67055899-67055979 64 6.00e-04 CTGCACCCTA GTTCCGGT GTGGGTGGA chr21:45627997-45628077 24 6.34e-04 CCGTCAGTGT CTTCCGTC CGCAGGAAGA chr1:167028492-167028572 37 6.34e-04 TAATTTCTGA TATCCGGA GAAAACTAAT chr21:43472102-43472182 65 6.34e-04 CCTACTCTTA TATCCGGA GCCAGCGG chr1:19803523-19803603 1 6.79e-04 . tttcctta tctgcaaaat chr3:128202094-128202174 55 6.79e-04 ATACACGAAG TTTCCTTA TCTTCAGGCT chr10:74036824-74036904 5 7.14e-04 agtg catccggg ccagggcccc chr12:89629567-89629647 52 7.28e-04 GGAAGGgagg tttccttc ttcaggaagc chr19:7702607-7702687 41 9.20e-04 ACCCCGGGGA GTTCCGGC CTCAGCTGCT chr19:19256935-19257015 44 9.49e-04 AATAGCTGCC CATCCGTA CCGGAAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:812950-813030 1.6e-05 43_[+1]_29 chr7:77464037-77464117 1.6e-05 62_[+1]_10 chr3:43435610-43435690 1.6e-05 46_[+1]_26 chr3:5236592-5236672 1.6e-05 52_[+1]_20 chr17:80158836-80158916 1.6e-05 60_[+1]_12 chr15:62411742-62411822 1.6e-05 51_[+1]_21 chr19:42954603-42954683 1.6e-05 47_[+1]_25 chr6:147235771-147235851 1.6e-05 38_[+1]_34 chr2:11970473-11970553 1.6e-05 56_[+1]_16 chr12:124744408-12474448 1.6e-05 46_[+1]_26 chr2:227637486-227637566 1.6e-05 51_[+1]_21 chr17:3877666-3877746 1.6e-05 16_[+1]_56 chr2:209795024-209795104 1.6e-05 21_[+1]_51 chr3:154745038-154745118 1.6e-05 4_[+1]_68 chr6:88441652-88441732 1.6e-05 26_[+1]_46 chr8:91986681-91986761 1.6e-05 23_[+1]_49 chr13:96090662-96090742 1.6e-05 34_[+1]_38 chr20:21599452-21599532 1.6e-05 10_[+1]_62 chr1:212687543-212687623 1.6e-05 19_[+1]_53 chr12:11951965-11952045 1.6e-05 24_[+1]_48 chr6:31702597-31702677 1.6e-05 41_[+1]_31 chr6:30650472-30650552 1.6e-05 43_[+1]_29 chr19:35453452-35453532 1.6e-05 42_[+1]_30 chr17:47910308-47910388 1.6e-05 44_[+1]_28 chr5:112267262-112267342 1.6e-05 24_[+1]_48 chr5:95059381-95059461 1.6e-05 46_[+1]_26 chr12:56584030-56584110 3.4e-05 40_[+1]_32 chr19:1905745-1905825 3.4e-05 8_[+1]_64 chr2:65663473-65663553 3.4e-05 23_[+1]_49 chr7:72349796-72349876 3.4e-05 48_[+1]_24 chr7:76178499-76178579 3.4e-05 67_[+1]_5 chr7:106012184-106012264 3.4e-05 51_[+1]_21 chr11:126350743-12635082 3.4e-05 39_[+1]_33 chr10:72124377-72124457 3.4e-05 29_[+1]_43 chr1:51895696-51895776 6.4e-05 27_[+1]_45 chr5:5598866-5598946 6.4e-05 37_[+1]_35 chr4:170543510-170543590 6.4e-05 10_[+1]_62 chr3:16351241-16351321 6.4e-05 13_[+1]_59 chr22:43355888-43355968 6.4e-05 34_[+1]_38 chrX:65235194-65235274 6.4e-05 52_[+1]_20 chr20:42588001-42588081 6.4e-05 25_[+1]_47 chr3:155052788-155052868 6.4e-05 37_[+1]_35 chr11:34831270-34831350 6.4e-05 58_[+1]_14 chr5:60116676-60116756 6.4e-05 8_[+1]_64 chr12:50056937-50057017 6.4e-05 54_[+1]_18 chr11:69064670-69064750 6.4e-05 14_[+1]_58 chr6:36095454-36095534 6.4e-05 37_[+1]_35 chr1:51899450-51899530 6.4e-05 27_[+1]_45 chr19:610873-610953 8.2e-05 67_[+1]_5 chr1:40525279-40525359 8.2e-05 50_[+1]_22 chr16:70438359-70438439 8.2e-05 44_[+1]_28 chr9:99019227-99019307 8.2e-05 72_[+1] chrX:153192353-153192433 8.2e-05 23_[+1]_49 chr5:176038534-176038614 0.00013 27_[+1]_45 chr6:99842014-99842094 0.00013 63_[+1]_9 chr17:73068212-73068292 0.00013 50_[+1]_22 chr8:30601870-30601950 0.00013 65_[+1]_7 chr5:148941575-148941655 0.00013 41_[+1]_31 chr17:27253196-27253276 0.00013 27_[+1]_45 chr6:144263393-144263473 0.00013 17_[+1]_55 chr1:41341539-41341619 0.00013 65_[+1]_7 chr20:49546014-49546094 0.00013 35_[+1]_37 chr1:161592059-161592139 0.00013 53_[+1]_19 chr5:148810003-148810083 0.00013 26_[+1]_46 chr7:135614613-135614693 0.00013 32_[+1]_40 chr9:136009308-136009388 0.00013 37_[+1]_35 chr1:142890987-142891067 0.00013 12_[+1]_60 chr1:19835575-19835655 0.00013 34_[+1]_38 chr15:89618069-89618149 0.00013 30_[+1]_42 chr17:72459800-72459880 0.00015 42_[+1]_30 chr15:76050789-76050869 0.00015 37_[+1]_35 chr19:45927104-45927184 0.00015 66_[+1]_6 chr17:13210098-13210178 0.00015 58_[+1]_14 chr3:4872971-4873051 0.00015 32_[+1]_40 chr7:99588737-99588817 0.00018 35_[+1]_37 chr17:60759097-60759177 0.00018 38_[+1]_34 chr11:32442505-32442585 0.00018 8_[+1]_64 chr20:45946112-45946192 0.00018 49_[+1]_23 chr6:35265528-35265608 0.00018 47_[+1]_25 chr8:107072704-107072784 0.00018 43_[+1]_29 chr16:16092525-16092605 0.00018 44_[+1]_28 chr17:74176079-74176159 0.00021 51_[+1]_21 chr22:22417667-22417747 0.00021 8_[+1]_64 chr5:131450420-131450500 0.00021 45_[+1]_27 chr17:28054040-28054120 0.00021 21_[+1]_51 chr5:42876680-42876760 0.00021 30_[+1]_42 chr13:41579134-41579214 0.00021 72_[+1] chr12:29396211-29396291 0.00021 41_[+1]_31 chr19:45927693-45927773 0.00023 32_[+1]_40 chr1:110438602-110438682 0.00023 69_[+1]_3 chr11:119312074-11931215 0.00023 32_[+1]_40 chr10:104359628-10435970 0.00023 40_[+1]_32 chr12:47754643-47754723 0.00023 37_[+1]_35 chr4:185276487-185276567 0.00023 26_[+1]_46 chr19:8258979-8259059 0.00028 61_[+1]_11 chr20:46768370-46768450 0.00028 31_[+1]_41 chr13:48736127-48736207 0.00028 6_[+1]_66 chr17:46555813-46555893 0.00028 31_[+1]_41 chrX:49023741-49023821 0.00028 26_[+1]_46 chr12:498459-498539 0.00028 4_[+1]_68 chr7:149473633-149473713 0.00028 42_[+1]_30 chr3:128251952-128252032 0.00033 30_[+1]_42 chr8:22596898-22596978 0.00033 46_[+1]_26 chr18:20840397-20840477 0.00033 68_[+1]_4 chr12:9519934-9520014 0.00033 42_[+1]_30 chr7:1105500-1105580 0.00033 35_[+1]_37 chr1:26109416-26109496 0.00033 47_[+1]_25 chr1:23429976-23430056 0.00033 41_[+1]_31 chr6:147092300-147092380 0.00033 49_[+1]_23 chr11:63299135-63299215 0.00033 22_[+1]_50 chr8:108317527-108317607 0.00033 56_[+1]_16 chr11:3853197-3853277 0.00035 32_[+1]_40 chr4:187112597-187112677 0.00038 26_[+1]_46 chr15:90944221-90944301 0.00038 33_[+1]_39 chr2:65590795-65590875 0.00038 35_[+1]_37 chr3:195837362-195837442 0.00038 51_[+1]_21 chr11:46148868-46148948 0.00038 45_[+1]_27 chr21:46255161-46255241 0.00038 36_[+1]_36 chr2:44105148-44105228 0.00043 22_[+1]_50 chr12:65066813-65066893 0.00043 18_[+1]_54 chr9:95882311-95882391 0.00043 35_[+1]_37 chr6:147271561-147271641 0.00046 58_[+1]_14 chr7:66594235-66594315 0.00046 18_[+1]_54 chr17:72864748-72864828 0.00049 68_[+1]_4 chr14:21512582-21512662 0.00049 72_[+1] chr22:17847989-17848069 0.0006 28_[+1]_44 chr22:19976537-19976617 0.0006 17_[+1]_55 chr22:18403201-18403281 0.0006 40_[+1]_32 chr11:67055899-67055979 0.0006 63_[+1]_9 chr21:45627997-45628077 0.00063 23_[+1]_49 chr1:167028492-167028572 0.00063 36_[+1]_36 chr21:43472102-43472182 0.00063 64_[+1]_8 chr1:19803523-19803603 0.00068 [+1]_72 chr3:128202094-128202174 0.00068 54_[+1]_18 chr10:74036824-74036904 0.00071 4_[+1]_68 chr12:89629567-89629647 0.00073 51_[+1]_21 chr19:7702607-7702687 0.00092 40_[+1]_32 chr19:19256935-19257015 0.00095 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCCKGT width=8 seqs=138 chr18:812950-813030 ( 44) CTTCCTGT 1 chr7:77464037-77464117 ( 63) CTTCCTGT 1 chr3:43435610-43435690 ( 47) CTTCCTGT 1 chr3:5236592-5236672 ( 53) CTTCCTGT 1 chr17:80158836-80158916 ( 61) CTTCCTGT 1 chr15:62411742-62411822 ( 52) CTTCCTGT 1 chr19:42954603-42954683 ( 48) CTTCCTGT 1 chr6:147235771-147235851 ( 39) CTTCCTGT 1 chr2:11970473-11970553 ( 57) CTTCCTGT 1 chr12:124744408-12474448 ( 47) CTTCCTGT 1 chr2:227637486-227637566 ( 52) CTTCCTGT 1 chr17:3877666-3877746 ( 17) CTTCCTGT 1 chr2:209795024-209795104 ( 22) CTTCCTGT 1 chr3:154745038-154745118 ( 5) CTTCCTGT 1 chr6:88441652-88441732 ( 27) CTTCCTGT 1 chr8:91986681-91986761 ( 24) CTTCCTGT 1 chr13:96090662-96090742 ( 35) CTTCCTGT 1 chr20:21599452-21599532 ( 11) CTTCCTGT 1 chr1:212687543-212687623 ( 20) CTTCCTGT 1 chr12:11951965-11952045 ( 25) CTTCCTGT 1 chr6:31702597-31702677 ( 42) CTTCCTGT 1 chr6:30650472-30650552 ( 44) CTTCCTGT 1 chr19:35453452-35453532 ( 43) CTTCCTGT 1 chr17:47910308-47910388 ( 45) CTTCCTGT 1 chr5:112267262-112267342 ( 25) CTTCCTGT 1 chr5:95059381-95059461 ( 47) CTTCCTGT 1 chr12:56584030-56584110 ( 41) CTTCCGGT 1 chr19:1905745-1905825 ( 9) CTTCCGGT 1 chr2:65663473-65663553 ( 24) CTTCCGGT 1 chr7:72349796-72349876 ( 49) CTTCCGGT 1 chr7:76178499-76178579 ( 68) CTTCCGGT 1 chr7:106012184-106012264 ( 52) CTTCCGGT 1 chr11:126350743-12635082 ( 40) CTTCCGGT 1 chr10:72124377-72124457 ( 30) CTTCCGGT 1 chr1:51895696-51895776 ( 28) TTTCCTGT 1 chr5:5598866-5598946 ( 38) CTTCCTGA 1 chr4:170543510-170543590 ( 11) TTTCCTGT 1 chr3:16351241-16351321 ( 14) TTTCCTGT 1 chr22:43355888-43355968 ( 35) TTTCCTGT 1 chrX:65235194-65235274 ( 53) TTTCCTGT 1 chr20:42588001-42588081 ( 26) TTTCCTGT 1 chr3:155052788-155052868 ( 38) TTTCCTGT 1 chr11:34831270-34831350 ( 59) CTTCCTGA 1 chr5:60116676-60116756 ( 9) CTTCCTGA 1 chr12:50056937-50057017 ( 55) TTTCCTGT 1 chr11:69064670-69064750 ( 15) CTTCCTGA 1 chr6:36095454-36095534 ( 38) CTTCCTGA 1 chr1:51899450-51899530 ( 28) CTTCCTGA 1 chr19:610873-610953 ( 68) CTTCCTGC 1 chr1:40525279-40525359 ( 51) CTTCCTGC 1 chr16:70438359-70438439 ( 45) CTTCCTGC 1 chr9:99019227-99019307 ( 73) CTTCCTGC 1 chrX:153192353-153192433 ( 24) CTTCCTGC 1 chr5:176038534-176038614 ( 28) TTTCCGGT 1 chr6:99842014-99842094 ( 64) TTTCCGGT 1 chr17:73068212-73068292 ( 51) CTTCCGGA 1 chr8:30601870-30601950 ( 66) CTTCCGGA 1 chr5:148941575-148941655 ( 42) CATCCTGT 1 chr17:27253196-27253276 ( 28) CATCCTGT 1 chr6:144263393-144263473 ( 18) CATCCTGT 1 chr1:41341539-41341619 ( 66) CATCCTGT 1 chr20:49546014-49546094 ( 36) CATCCTGT 1 chr1:161592059-161592139 ( 54) TTTCCGGT 1 chr5:148810003-148810083 ( 27) TTTCCGGT 1 chr7:135614613-135614693 ( 33) CTTCCGGA 1 chr9:136009308-136009388 ( 38) CATCCTGT 1 chr1:142890987-142891067 ( 13) CTTCCGGA 1 chr1:19835575-19835655 ( 35) CATCCTGT 1 chr15:89618069-89618149 ( 31) CATCCTGT 1 chr17:72459800-72459880 ( 43) CTTCCGGC 1 chr15:76050789-76050869 ( 38) CTTCCGGC 1 chr19:45927104-45927184 ( 67) CTTCCGGC 1 chr17:13210098-13210178 ( 59) CTTCCGGC 1 chr3:4872971-4873051 ( 33) CTTCCGGC 1 chr7:99588737-99588817 ( 36) CATCCGGT 1 chr17:60759097-60759177 ( 39) CATCCGGT 1 chr11:32442505-32442585 ( 9) TTTCCTGA 1 chr20:45946112-45946192 ( 50) CATCCGGT 1 chr6:35265528-35265608 ( 48) TTTCCTGA 1 chr8:107072704-107072784 ( 44) CATCCGGT 1 chr16:16092525-16092605 ( 45) TTTCCTGA 1 chr17:74176079-74176159 ( 52) CTTCCTTT 1 chr22:22417667-22417747 ( 9) TTTCCTGC 1 chr5:131450420-131450500 ( 46) CTTCCTTT 1 chr17:28054040-28054120 ( 22) TTTCCTGC 1 chr5:42876680-42876760 ( 31) CTTCCTTT 1 chr13:41579134-41579214 ( 73) TTTCCTGC 1 chr12:29396211-29396291 ( 42) TTTCCTGC 1 chr19:45927693-45927773 ( 33) CTTCCTGG 1 chr1:110438602-110438682 ( 70) CTTCCTGG 1 chr11:119312074-11931215 ( 33) CTTCCTGG 1 chr10:104359628-10435970 ( 41) CTTCCTGG 1 chr12:47754643-47754723 ( 38) CTTCCTGG 1 chr4:185276487-185276567 ( 27) CTTCCTGG 1 chr19:8258979-8259059 ( 62) TTTCCGGA 1 chr20:46768370-46768450 ( 32) TATCCTGT 1 chr13:48736127-48736207 ( 7) TTTCCGGA 1 chr17:46555813-46555893 ( 32) TTTCCGGA 1 chrX:49023741-49023821 ( 27) CATCCTGA 1 chr12:498459-498539 ( 5) TTTCCGGA 1 chr7:149473633-149473713 ( 43) CATCCTGA 1 chr3:128251952-128252032 ( 31) CTTCCGTT 1 chr8:22596898-22596978 ( 47) TTTCCGGC 1 chr18:20840397-20840477 ( 69) TTTCCGGC 1 chr12:9519934-9520014 ( 43) CTTCCGTT 1 chr7:1105500-1105580 ( 36) TTTCCGGC 1 chr1:26109416-26109496 ( 48) CTTCCGTT 1 chr1:23429976-23430056 ( 42) CTTCCGTT 1 chr6:147092300-147092380 ( 50) TTTCCGGC 1 chr11:63299135-63299215 ( 23) CATCCTGC 1 chr8:108317527-108317607 ( 57) CATCCTGC 1 chr11:3853197-3853277 ( 33) CTTCCGGG 1 chr4:187112597-187112677 ( 27) CATCCGGA 1 chr15:90944221-90944301 ( 34) CATCCGGA 1 chr2:65590795-65590875 ( 36) CATCCGGA 1 chr3:195837362-195837442 ( 52) CATCCGGA 1 chr11:46148868-46148948 ( 46) TATCCGGT 1 chr21:46255161-46255241 ( 37) CATCCGGA 1 chr2:44105148-44105228 ( 23) CATCCGGC 1 chr12:65066813-65066893 ( 19) TTTCCTTT 1 chr9:95882311-95882391 ( 36) CATCCGGC 1 chr6:147271561-147271641 ( 59) TTTCCTGG 1 chr7:66594235-66594315 ( 19) GTTCCTGT 1 chr17:72864748-72864828 ( 69) CTTCCTTC 1 chr14:21512582-21512662 ( 73) CTTCCTTC 1 chr22:17847989-17848069 ( 29) TTTCCGGG 1 chr22:19976537-19976617 ( 18) GTTCCGGT 1 chr22:18403201-18403281 ( 41) GTTCCGGT 1 chr11:67055899-67055979 ( 64) GTTCCGGT 1 chr21:45627997-45628077 ( 24) CTTCCGTC 1 chr1:167028492-167028572 ( 37) TATCCGGA 1 chr21:43472102-43472182 ( 65) TATCCGGA 1 chr1:19803523-19803603 ( 1) TTTCCTTA 1 chr3:128202094-128202174 ( 55) TTTCCTTA 1 chr10:74036824-74036904 ( 5) CATCCGGG 1 chr12:89629567-89629647 ( 52) TTTCCTTC 1 chr19:7702607-7702687 ( 41) GTTCCGGC 1 chr19:19256935-19257015 ( 44) CATCCGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.41804 E= 4.3e-101 -1375 138 -287 18 -13 -1375 -1375 174 -1375 -1375 -1375 208 -1375 190 -1375 -1375 -1375 190 -1375 -1375 -1375 -1375 62 132 -1375 -1375 175 -113 -13 -45 -187 114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 138 E= 4.3e-101 0.000000 0.695652 0.036232 0.268116 0.210145 0.000000 0.000000 0.789855 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.405797 0.594203 0.000000 0.000000 0.891304 0.108696 0.210145 0.195652 0.072464 0.521739 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCKGT MEME-1 regular expression -------------------------------------------------------------------------------- [CT][TA]TCC[TG]G[TA] -------------------------------------------------------------------------------- Time 4.71 secs. ******************************************************************************** ******************************************************************************** MOTIF CMGGAAGY MEME-2 width = 8 sites = 133 llr = 1002 E-value = 1.9e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 15::a821 pos.-specific C 85:::::3 probability G 2:aa::81 matrix T :::::2:5 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 ***** Entropy 1.1 ****** (10.9 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGAAGT consensus C T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:43772995-43773075 64 1.44e-05 TTATGTCAAA CAGGAAGT AGGCCCTTG chr6:158830617-158830697 38 1.44e-05 ATTTAGAGAA CAGGAAGT AAGCTACTGG chr5:175123610-175123690 68 1.44e-05 AGGGGCTCCG CAGGAAGT AGGGC chr22:21921888-21921968 73 1.44e-05 TCCCCCGCTC CAGGAAGT chr6:144263393-144263473 5 1.44e-05 GGCA CAGGAAGT CCTTGCATCC chr6:131314686-131314766 12 1.44e-05 ctgctgtaaa caggaagt gtctcagtct chr2:11970473-11970553 1 1.44e-05 . CAGGAAGT CCATTCAGCC chr12:47670777-47670857 33 1.44e-05 TTGTGCAAGA CAGGAAGT ATCCAGAGAG chr4:54775024-54775104 55 1.44e-05 TTTCATAACA CAGGAAGT GGGGAAGCAG chr12:123591725-12359180 9 1.44e-05 GACAATGG CAGGAAGT GCCCCTCCCT chr19:16197370-16197450 10 1.44e-05 GCGCAGCAG CAGGAAGT GGGAGGAAAT chr6:147271561-147271641 42 1.44e-05 CGACACCAGA CAGGAAGT CAGAGCAAGT chr11:118979432-11897951 22 1.44e-05 TCTGGCCTCC CAGGAAGT GGGGCAGGAA chr17:38593605-38593685 40 1.44e-05 agctaaggaa caggaagt ggtcacaaag chr7:115851169-115851249 5 1.44e-05 GGCT CAGGAAGT TGAATTTCAT chr4:187112597-187112677 40 3.11e-05 CCGGAGGCGG CCGGAAGT GTCGCCGGCC chr17:65362654-65362734 41 3.11e-05 GTCACCCACA CCGGAAGT TGCCCGCGCA chr17:62502854-62502934 18 3.11e-05 AAATAGCTCA CCGGAAGT GCGCTGCTCG chr1:43222760-43222840 35 3.11e-05 ACAAAAGAGA CCGGAAGT GCCATCTTAA chr7:73149201-73149281 51 3.11e-05 CTGGGCCTGG CCGGAAGT TTCTAGGATG chr6:21987815-21987895 32 3.11e-05 AGTTCACCGT CCGGAAGT GCTGTTGAGG chr4:140216959-140217039 52 3.11e-05 CACCTGGCGG CCGGAAGT GCGGGACTCG chr1:182399940-182400020 30 3.11e-05 gatgaggtaa ccggaagt gttgcagcca chr8:144371757-144371837 21 3.11e-05 AGGTTCAGTG CCGGAAGT TGGGCCTGGA chr11:67030320-67030400 35 3.11e-05 gcctgccact ccggaagt ggggaagggc chr19:19256935-19257015 52 3.11e-05 CCCATCCGTA CCGGAAGT GTGCGCAGTA chr4:170543510-170543590 51 4.74e-05 TCAGACGGCT CAGGAAGC CAGATTTGAT chr3:155052788-155052868 47 4.74e-05 GTTTCCTGTC CAGGAAGC GGTGCACACC chr2:227637486-227637566 29 4.74e-05 GATATTTACA CAGGAAGC AGTAAGTTAC chr9:136009308-136009388 47 4.74e-05 ACATCCTGTC CAGGAAGC AGATAGCAGA chr13:41579134-41579214 32 4.74e-05 gtttaactga caggaagc acagagtaag chr12:89629567-89629647 62 4.74e-05 tttccttctt caggaagc ctcctctgac chr2:11272914-11272994 43 6.64e-05 TGACGGGCTG CCGGAAGC AAGTGCAATA chr12:93638088-93638168 55 6.64e-05 cttaacaatt ccggaagc aaactttttt chr1:40506397-40506477 25 6.64e-05 GCGGTTCTTG CCGGAAGC GGAGAGCGGC chr19:610873-610953 3 6.64e-05 gg ccggaagc ccaacatcaa chr4:186123766-186123846 15 6.64e-05 CCCCACCCCT CCGGAAGC ACAAACCACA chr11:108093748-10809382 32 6.64e-05 AGGGTTTGAA CCGGAAGC GGGAGTAGGT chr2:69076958-69077038 36 6.64e-05 TGTGAGTCAG CCGGAAGC CAAGTCACAA chr7:66594235-66594315 40 6.64e-05 cctcccctta ccggaagc acaagggatt chrX:39710165-39710245 29 6.64e-05 GCAACTCACT CCGGAAGC ACCCCTCCCC chr8:91013167-91013247 36 6.64e-05 AGTCAAAACG CCGGAAGC TGCCCTTAGT chr14:71597502-71597582 52 8.12e-05 gccgataaaa caggatgt ggtaaagaag chr6:105153122-105153202 24 8.12e-05 ACAAGAACAG CAGGATGT GGTCAGAGGC chr21:30204574-30204654 18 8.12e-05 AGTCATGTTT CAGGATGT GGTTTTAGCC chr5:141736612-141736692 31 8.12e-05 CACAAAAGAA CAGGATGT TGTTGATTTG chr3:10284163-10284243 29 8.12e-05 CACACGGGCC CAGGATGT GGCTGATTTT chr9:95826784-95826864 39 8.12e-05 GCTGAGAACA CAGGATGT GGCTTTTGGC chr5:89953758-89953838 26 8.12e-05 AGGTCTGATG CAGGATGT GAGGTCCTAT chr1:51899450-51899530 12 8.12e-05 ACAGGCCTGA CAGGATGT GGCTTTAACT chr16:53552774-53552854 24 8.12e-05 GAAAGGCAGG CAGGATGT GGGAAGGGAA chr16:3018899-3018979 9 9.84e-05 GGGGCGTA CCGGATGT AGGCCGGACC chr2:38770137-38770217 11 9.84e-05 agataaaagg ccggatgt ctccacagtc chr11:77010753-77010833 25 9.84e-05 ctCTGCCTCA CCGGATGT CTGTTCATAT chr22:21213141-21213221 73 9.84e-05 GTTGCGCGCG CCGGATGT chr11:69064670-69064750 31 9.84e-05 GAGGAGCAGG CCGGATGT AAGTTATCAA chr12:96795182-96795262 41 9.84e-05 AGAGTAGGGA CCGGATGT AGACAACATA chr14:78914945-78915025 23 9.84e-05 TTCACGGACA CCGGATGT TGTGCAATAT chr22:22875413-22875493 54 9.84e-05 CCTTTCTGgg ccggatgt ggtgactcac chr1:85710570-85710650 20 1.11e-04 TACAGACACA CAGGAAAT GACTCTTCAA chr14:91267758-91267838 40 1.11e-04 acagcagcca caggaaat gagcacacag chr1:112864802-112864882 15 1.11e-04 GGGAAGGAGA CAGGAAAT GTCTTATCAG chr1:110438602-110438682 34 1.54e-04 TCATTGTTGA CAGGAAGA GGGGTCAGAC chr17:74176079-74176159 43 1.54e-04 TATCCGGAAA CAGGAAGA GCTTCCTTTT chr22:17847989-17848069 59 1.54e-04 GCGGAGGAGG CAGGAAGA CAATGGCTCA chr1:22345650-22345730 24 1.54e-04 GGGAGGTGGG GAGGAAGT TCTGAAACCA chr1:36839537-36839617 17 1.54e-04 TGCAGCCAGA GAGGAAGT GACTCAGCCC chr6:33548009-33548089 29 1.54e-04 GCTCCCTCTA GAGGAAGT TGCTCTGTGG chr17:73854926-73855006 17 1.54e-04 atgacaagaa gaggaagt tgcagtgcag chr17:66434310-66434390 33 1.54e-04 ATAGCTACGG GAGGAAGT GGCTGAGCCC chr6:26389611-26389691 4 1.54e-04 gta caggaaga gcatatgcaa chr11:120215210-12021529 32 1.54e-04 GGTTTACTGA GAGGAAGT GGTTCTTGTG chr21:45627997-45628077 34 1.54e-04 CTTCCGTCCG CAGGAAGA ACCCAGGCCT chr10:69550820-69550900 22 1.54e-04 TATCACAGAA CCGGAAAT TGAAGGGAAT chr12:11951965-11952045 6 1.54e-04 CTGTT CAGGAAGA GATCTTGGGA chr4:15651718-15651798 28 1.54e-04 gttgtcacca ccggaaat gtactactga chr11:113464569-11346464 28 1.54e-04 ACAGAGCAGA GAGGAAGT GGTGGTGGCC chr5:141852028-141852108 29 1.54e-04 gctcaCAGCT CCGGAAAT GCTCATAGGC chr11:82719098-82719178 39 2.03e-04 CTTGGCTGGA CCGGAAGA ACCTTCTTAT chr1:227015847-227015927 37 2.03e-04 CCCAGTCAAA CCGGAAGA GAGCCAGAGG chr5:139555332-139555412 11 2.03e-04 TGGGAGCGGA GCGGAAGT AACTAGTGAC chr12:9917538-9917618 22 2.03e-04 GCTGCAGCAG CAGGATGC TTTTGGGTAC chr19:13345523-13345603 29 2.03e-04 ACGTCCCCTA CCGGAAGA GAAGGGCACG chrX:153192353-153192433 34 2.03e-04 CTTCCTGCTG CCGGAAGA GACTGCTCTG chr17:27253196-27253276 46 2.16e-04 TTCTGCAACC AAGGAAGT CATCATTCAT chr20:42588001-42588081 52 2.16e-04 GTACTGACAG AAGGAAGT GAACCTGGCA chr5:60116676-60116756 44 2.16e-04 CCACACACAG AAGGAAGT GAACTAATAA chr16:68113663-68113743 28 2.16e-04 CTTGGGGCGG AAGGAAGT GGCAGATTCT chr3:195837362-195837442 62 2.16e-04 catccggATA AAGGAAGT CCCTGTCCGG chrX:40032114-40032194 65 2.51e-04 GACGTGACCG CCGGATGC TATGCAGC chr6:147092300-147092380 38 2.51e-04 CAGCTTGTTC CCGGATGC TGTGTTTCCG chr12:47754643-47754723 18 2.51e-04 ACGTACACAG CAGGAAGG AAGGGGAGGT chr17:71007389-71007469 32 2.51e-04 gcagggggga caggaagg aaaccggaag chr12:102874361-10287444 33 2.80e-04 ACACTGTAGA CAGGAAAC AGCTGGGGGA chr12:498459-498539 46 2.80e-04 CCGCCCCCTG CAGGAAAC GGAATCCTTC chr19:45927693-45927773 24 2.98e-04 gccccggagt ccggaagg gcttcctgga chr4:86501885-86501965 38 2.98e-04 TTGCCTGTAG CCGGAAGG GGAGGACAGA chr2:48338494-48338574 35 2.98e-04 GTTTCCAGCT CCGGAAGG ACTGCCCCCG chr13:114103526-11410360 18 2.98e-04 AGAGGCTCAC CCGGAAGG AGGCAGCCCC chr12:40019920-40020000 28 2.98e-04 CCTATCAGGA CCGGAAGG AACACGCAGA chr2:178937433-178937513 3 3.31e-04 tt ccggaaac ccgagctatc chr1:51895696-51895776 54 3.31e-04 TGGAGGAAGA GAGGAAGC AGAGGCTCTT chr5:148608626-148608706 58 3.31e-04 CAGAGAGGAA CCGGAAAC GCTCTCTCTA chr2:191746777-191746857 12 3.31e-04 ATCTGGGGCA CCGGAAAC AATGTTTCAG chr12:65066813-65066893 29 3.31e-04 TTTCCTTTCT CCGGAAAC TGTCCTTATC chr20:31253262-31253342 29 3.31e-04 AGTGACCAGG CCGGAAAC ACTGTAGGAG chr3:4872971-4873051 72 3.31e-04 TGCTCCGAGA GAGGAAGC A chr17:3877666-3877746 59 3.31e-04 AGACCGAGGA GAGGAAGC TGTCCTCTCC chr3:128202094-128202174 35 3.31e-04 CTCGCAGAGT CCGGAAAC AGATACACGA chr7:149473633-149473713 67 3.31e-04 GGAGGCTCTG GAGGAAGC AGGCAT chr7:153120110-153120190 71 3.44e-04 AGTGGTGAAA CAGGATAT GG chr4:68389072-68389152 48 3.44e-04 ctgttttcca caggatat gagtcaacaa chr17:76123435-76123515 32 3.63e-04 CCAGCCCCAG GCGGAAGC AGCACAGGGG chr19:34818908-34818988 2 3.63e-04 G GCGGAAGC CCAGCAGACG chr11:46448298-46448378 10 3.63e-04 ATAATTGCA GCGGAAGC AGCTTTTAAT chr17:72864748-72864828 14 4.21e-04 GCTAAGTCTG CCGGATAT TCTTACCCCT chr20:35185046-35185126 29 4.21e-04 CCCATTCCTG CCGGATAT GATGTTGCCA chr5:159066169-159066249 39 4.71e-04 ttatcataaa acggaagc tacagcccta chr19:45674697-45674777 13 4.71e-04 TACACACAGA CCGGATGA AAGGAAAGGT chr2:209794305-209794385 21 5.08e-04 gctgatgcaa gaggaaat aatccaagct chr6:31702597-31702677 51 5.08e-04 CCTTCCTGTC AAGGATGT GGGGGAAGGG chr2:44105148-44105228 61 5.24e-04 AGACCAGCCA CAGGATGG CAGTAGAATA chr2:109883585-109883665 13 5.24e-04 GGTGGTCAAA CAGGATGG GAGTTGCTTC chr10:44094869-44094949 59 5.96e-04 gccagagcag gaggaaga gagagagagg chr8:107072704-107072784 8 5.96e-04 aaggaaa acggatgt gctgcggtca chr9:99337350-99337430 13 5.96e-04 gtgatttaca acggatgt ttatttcttg chr2:26074903-26074983 22 5.96e-04 TCTTCCACAA GCGGAAAT GACTACAGTA chr7:632125-632205 54 6.90e-04 CCGAGTCACT CCGGATAC TGGTCAGCGG chr3:154745038-154745118 59 7.14e-04 ACACAACCAT AAGGAAGA GCTCTCTAAA chr6:8064751-8064831 66 7.66e-04 CTGGATCAGG GCGGATGC TGCTAGA chr1:19803523-19803603 19 8.08e-04 tctgcaaaat gaggaaac agacctcaca chr5:141742480-141742560 58 8.73e-04 TGAAATCACA AAGGAAGG CAGGCTTGGA chr11:3853197-3853277 71 1.06e-03 GACACTGGAA AAGGATGA TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:43772995-43773075 1.4e-05 63_[+2]_9 chr6:158830617-158830697 1.4e-05 37_[+2]_35 chr5:175123610-175123690 1.4e-05 67_[+2]_5 chr22:21921888-21921968 1.4e-05 72_[+2] chr6:144263393-144263473 1.4e-05 4_[+2]_68 chr6:131314686-131314766 1.4e-05 11_[+2]_61 chr2:11970473-11970553 1.4e-05 [+2]_72 chr12:47670777-47670857 1.4e-05 32_[+2]_40 chr4:54775024-54775104 1.4e-05 54_[+2]_18 chr12:123591725-12359180 1.4e-05 8_[+2]_64 chr19:16197370-16197450 1.4e-05 9_[+2]_63 chr6:147271561-147271641 1.4e-05 41_[+2]_31 chr11:118979432-11897951 1.4e-05 21_[+2]_51 chr17:38593605-38593685 1.4e-05 39_[+2]_33 chr7:115851169-115851249 1.4e-05 4_[+2]_68 chr4:187112597-187112677 3.1e-05 39_[+2]_33 chr17:65362654-65362734 3.1e-05 40_[+2]_32 chr17:62502854-62502934 3.1e-05 17_[+2]_55 chr1:43222760-43222840 3.1e-05 34_[+2]_38 chr7:73149201-73149281 3.1e-05 50_[+2]_22 chr6:21987815-21987895 3.1e-05 31_[+2]_41 chr4:140216959-140217039 3.1e-05 51_[+2]_21 chr1:182399940-182400020 3.1e-05 29_[+2]_43 chr8:144371757-144371837 3.1e-05 20_[+2]_52 chr11:67030320-67030400 3.1e-05 34_[+2]_38 chr19:19256935-19257015 3.1e-05 51_[+2]_21 chr4:170543510-170543590 4.7e-05 50_[+2]_22 chr3:155052788-155052868 4.7e-05 46_[+2]_26 chr2:227637486-227637566 4.7e-05 28_[+2]_44 chr9:136009308-136009388 4.7e-05 46_[+2]_26 chr13:41579134-41579214 4.7e-05 31_[+2]_41 chr12:89629567-89629647 4.7e-05 61_[+2]_11 chr2:11272914-11272994 6.6e-05 42_[+2]_30 chr12:93638088-93638168 6.6e-05 54_[+2]_18 chr1:40506397-40506477 6.6e-05 24_[+2]_48 chr19:610873-610953 6.6e-05 2_[+2]_70 chr4:186123766-186123846 6.6e-05 14_[+2]_58 chr11:108093748-10809382 6.6e-05 31_[+2]_41 chr2:69076958-69077038 6.6e-05 35_[+2]_37 chr7:66594235-66594315 6.6e-05 39_[+2]_33 chrX:39710165-39710245 6.6e-05 28_[+2]_44 chr8:91013167-91013247 6.6e-05 35_[+2]_37 chr14:71597502-71597582 8.1e-05 51_[+2]_21 chr6:105153122-105153202 8.1e-05 23_[+2]_49 chr21:30204574-30204654 8.1e-05 17_[+2]_55 chr5:141736612-141736692 8.1e-05 30_[+2]_42 chr3:10284163-10284243 8.1e-05 28_[+2]_44 chr9:95826784-95826864 8.1e-05 38_[+2]_34 chr5:89953758-89953838 8.1e-05 25_[+2]_47 chr1:51899450-51899530 8.1e-05 11_[+2]_61 chr16:53552774-53552854 8.1e-05 23_[+2]_49 chr16:3018899-3018979 9.8e-05 8_[+2]_64 chr2:38770137-38770217 9.8e-05 10_[+2]_62 chr11:77010753-77010833 9.8e-05 24_[+2]_48 chr22:21213141-21213221 9.8e-05 72_[+2] chr11:69064670-69064750 9.8e-05 30_[+2]_42 chr12:96795182-96795262 9.8e-05 40_[+2]_32 chr14:78914945-78915025 9.8e-05 22_[+2]_50 chr22:22875413-22875493 9.8e-05 53_[+2]_19 chr1:85710570-85710650 0.00011 19_[+2]_53 chr14:91267758-91267838 0.00011 39_[+2]_33 chr1:112864802-112864882 0.00011 14_[+2]_58 chr1:110438602-110438682 0.00015 33_[+2]_39 chr17:74176079-74176159 0.00015 42_[+2]_30 chr22:17847989-17848069 0.00015 58_[+2]_14 chr1:22345650-22345730 0.00015 23_[+2]_49 chr1:36839537-36839617 0.00015 16_[+2]_56 chr6:33548009-33548089 0.00015 28_[+2]_44 chr17:73854926-73855006 0.00015 16_[+2]_56 chr17:66434310-66434390 0.00015 32_[+2]_40 chr6:26389611-26389691 0.00015 3_[+2]_69 chr11:120215210-12021529 0.00015 31_[+2]_41 chr21:45627997-45628077 0.00015 33_[+2]_39 chr10:69550820-69550900 0.00015 21_[+2]_51 chr12:11951965-11952045 0.00015 5_[+2]_67 chr4:15651718-15651798 0.00015 27_[+2]_45 chr11:113464569-11346464 0.00015 27_[+2]_45 chr5:141852028-141852108 0.00015 28_[+2]_44 chr11:82719098-82719178 0.0002 38_[+2]_34 chr1:227015847-227015927 0.0002 36_[+2]_36 chr5:139555332-139555412 0.0002 10_[+2]_62 chr12:9917538-9917618 0.0002 21_[+2]_51 chr19:13345523-13345603 0.0002 28_[+2]_44 chrX:153192353-153192433 0.0002 33_[+2]_39 chr17:27253196-27253276 0.00022 45_[+2]_27 chr20:42588001-42588081 0.00022 51_[+2]_21 chr5:60116676-60116756 0.00022 43_[+2]_29 chr16:68113663-68113743 0.00022 27_[+2]_45 chr3:195837362-195837442 0.00022 61_[+2]_11 chrX:40032114-40032194 0.00025 64_[+2]_8 chr6:147092300-147092380 0.00025 37_[+2]_35 chr12:47754643-47754723 0.00025 17_[+2]_55 chr17:71007389-71007469 0.00025 31_[+2]_41 chr12:102874361-10287444 0.00028 32_[+2]_40 chr12:498459-498539 0.00028 45_[+2]_27 chr19:45927693-45927773 0.0003 23_[+2]_49 chr4:86501885-86501965 0.0003 37_[+2]_35 chr2:48338494-48338574 0.0003 34_[+2]_38 chr13:114103526-11410360 0.0003 17_[+2]_55 chr12:40019920-40020000 0.0003 27_[+2]_45 chr2:178937433-178937513 0.00033 2_[+2]_70 chr1:51895696-51895776 0.00033 53_[+2]_19 chr5:148608626-148608706 0.00033 57_[+2]_15 chr2:191746777-191746857 0.00033 11_[+2]_61 chr12:65066813-65066893 0.00033 28_[+2]_44 chr20:31253262-31253342 0.00033 28_[+2]_44 chr3:4872971-4873051 0.00033 71_[+2]_1 chr17:3877666-3877746 0.00033 58_[+2]_14 chr3:128202094-128202174 0.00033 34_[+2]_38 chr7:149473633-149473713 0.00033 66_[+2]_6 chr7:153120110-153120190 0.00034 70_[+2]_2 chr4:68389072-68389152 0.00034 47_[+2]_25 chr17:76123435-76123515 0.00036 31_[+2]_41 chr19:34818908-34818988 0.00036 1_[+2]_71 chr11:46448298-46448378 0.00036 9_[+2]_63 chr17:72864748-72864828 0.00042 13_[+2]_59 chr20:35185046-35185126 0.00042 28_[+2]_44 chr5:159066169-159066249 0.00047 38_[+2]_34 chr19:45674697-45674777 0.00047 12_[+2]_60 chr2:209794305-209794385 0.00051 20_[+2]_52 chr6:31702597-31702677 0.00051 50_[+2]_22 chr2:44105148-44105228 0.00052 60_[+2]_12 chr2:109883585-109883665 0.00052 12_[+2]_60 chr10:44094869-44094949 0.0006 58_[+2]_14 chr8:107072704-107072784 0.0006 7_[+2]_65 chr9:99337350-99337430 0.0006 12_[+2]_60 chr2:26074903-26074983 0.0006 21_[+2]_51 chr7:632125-632205 0.00069 53_[+2]_19 chr3:154745038-154745118 0.00071 58_[+2]_14 chr6:8064751-8064831 0.00077 65_[+2]_7 chr1:19803523-19803603 0.00081 18_[+2]_54 chr5:141742480-141742560 0.00087 57_[+2]_15 chr11:3853197-3853277 0.0011 70_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMGGAAGY width=8 seqs=133 chr5:43772995-43773075 ( 64) CAGGAAGT 1 chr6:158830617-158830697 ( 38) CAGGAAGT 1 chr5:175123610-175123690 ( 68) CAGGAAGT 1 chr22:21921888-21921968 ( 73) CAGGAAGT 1 chr6:144263393-144263473 ( 5) CAGGAAGT 1 chr6:131314686-131314766 ( 12) CAGGAAGT 1 chr2:11970473-11970553 ( 1) CAGGAAGT 1 chr12:47670777-47670857 ( 33) CAGGAAGT 1 chr4:54775024-54775104 ( 55) CAGGAAGT 1 chr12:123591725-12359180 ( 9) CAGGAAGT 1 chr19:16197370-16197450 ( 10) CAGGAAGT 1 chr6:147271561-147271641 ( 42) CAGGAAGT 1 chr11:118979432-11897951 ( 22) CAGGAAGT 1 chr17:38593605-38593685 ( 40) CAGGAAGT 1 chr7:115851169-115851249 ( 5) CAGGAAGT 1 chr4:187112597-187112677 ( 40) CCGGAAGT 1 chr17:65362654-65362734 ( 41) CCGGAAGT 1 chr17:62502854-62502934 ( 18) CCGGAAGT 1 chr1:43222760-43222840 ( 35) CCGGAAGT 1 chr7:73149201-73149281 ( 51) CCGGAAGT 1 chr6:21987815-21987895 ( 32) CCGGAAGT 1 chr4:140216959-140217039 ( 52) CCGGAAGT 1 chr1:182399940-182400020 ( 30) CCGGAAGT 1 chr8:144371757-144371837 ( 21) CCGGAAGT 1 chr11:67030320-67030400 ( 35) CCGGAAGT 1 chr19:19256935-19257015 ( 52) CCGGAAGT 1 chr4:170543510-170543590 ( 51) CAGGAAGC 1 chr3:155052788-155052868 ( 47) CAGGAAGC 1 chr2:227637486-227637566 ( 29) CAGGAAGC 1 chr9:136009308-136009388 ( 47) CAGGAAGC 1 chr13:41579134-41579214 ( 32) CAGGAAGC 1 chr12:89629567-89629647 ( 62) CAGGAAGC 1 chr2:11272914-11272994 ( 43) CCGGAAGC 1 chr12:93638088-93638168 ( 55) CCGGAAGC 1 chr1:40506397-40506477 ( 25) CCGGAAGC 1 chr19:610873-610953 ( 3) CCGGAAGC 1 chr4:186123766-186123846 ( 15) CCGGAAGC 1 chr11:108093748-10809382 ( 32) CCGGAAGC 1 chr2:69076958-69077038 ( 36) CCGGAAGC 1 chr7:66594235-66594315 ( 40) CCGGAAGC 1 chrX:39710165-39710245 ( 29) CCGGAAGC 1 chr8:91013167-91013247 ( 36) CCGGAAGC 1 chr14:71597502-71597582 ( 52) CAGGATGT 1 chr6:105153122-105153202 ( 24) CAGGATGT 1 chr21:30204574-30204654 ( 18) CAGGATGT 1 chr5:141736612-141736692 ( 31) CAGGATGT 1 chr3:10284163-10284243 ( 29) CAGGATGT 1 chr9:95826784-95826864 ( 39) CAGGATGT 1 chr5:89953758-89953838 ( 26) CAGGATGT 1 chr1:51899450-51899530 ( 12) CAGGATGT 1 chr16:53552774-53552854 ( 24) CAGGATGT 1 chr16:3018899-3018979 ( 9) CCGGATGT 1 chr2:38770137-38770217 ( 11) CCGGATGT 1 chr11:77010753-77010833 ( 25) CCGGATGT 1 chr22:21213141-21213221 ( 73) CCGGATGT 1 chr11:69064670-69064750 ( 31) CCGGATGT 1 chr12:96795182-96795262 ( 41) CCGGATGT 1 chr14:78914945-78915025 ( 23) CCGGATGT 1 chr22:22875413-22875493 ( 54) CCGGATGT 1 chr1:85710570-85710650 ( 20) CAGGAAAT 1 chr14:91267758-91267838 ( 40) CAGGAAAT 1 chr1:112864802-112864882 ( 15) CAGGAAAT 1 chr1:110438602-110438682 ( 34) CAGGAAGA 1 chr17:74176079-74176159 ( 43) CAGGAAGA 1 chr22:17847989-17848069 ( 59) CAGGAAGA 1 chr1:22345650-22345730 ( 24) GAGGAAGT 1 chr1:36839537-36839617 ( 17) GAGGAAGT 1 chr6:33548009-33548089 ( 29) GAGGAAGT 1 chr17:73854926-73855006 ( 17) GAGGAAGT 1 chr17:66434310-66434390 ( 33) GAGGAAGT 1 chr6:26389611-26389691 ( 4) CAGGAAGA 1 chr11:120215210-12021529 ( 32) GAGGAAGT 1 chr21:45627997-45628077 ( 34) CAGGAAGA 1 chr10:69550820-69550900 ( 22) CCGGAAAT 1 chr12:11951965-11952045 ( 6) CAGGAAGA 1 chr4:15651718-15651798 ( 28) CCGGAAAT 1 chr11:113464569-11346464 ( 28) GAGGAAGT 1 chr5:141852028-141852108 ( 29) CCGGAAAT 1 chr11:82719098-82719178 ( 39) CCGGAAGA 1 chr1:227015847-227015927 ( 37) CCGGAAGA 1 chr5:139555332-139555412 ( 11) GCGGAAGT 1 chr12:9917538-9917618 ( 22) CAGGATGC 1 chr19:13345523-13345603 ( 29) CCGGAAGA 1 chrX:153192353-153192433 ( 34) CCGGAAGA 1 chr17:27253196-27253276 ( 46) AAGGAAGT 1 chr20:42588001-42588081 ( 52) AAGGAAGT 1 chr5:60116676-60116756 ( 44) AAGGAAGT 1 chr16:68113663-68113743 ( 28) AAGGAAGT 1 chr3:195837362-195837442 ( 62) AAGGAAGT 1 chrX:40032114-40032194 ( 65) CCGGATGC 1 chr6:147092300-147092380 ( 38) CCGGATGC 1 chr12:47754643-47754723 ( 18) CAGGAAGG 1 chr17:71007389-71007469 ( 32) CAGGAAGG 1 chr12:102874361-10287444 ( 33) CAGGAAAC 1 chr12:498459-498539 ( 46) CAGGAAAC 1 chr19:45927693-45927773 ( 24) CCGGAAGG 1 chr4:86501885-86501965 ( 38) CCGGAAGG 1 chr2:48338494-48338574 ( 35) CCGGAAGG 1 chr13:114103526-11410360 ( 18) CCGGAAGG 1 chr12:40019920-40020000 ( 28) CCGGAAGG 1 chr2:178937433-178937513 ( 3) CCGGAAAC 1 chr1:51895696-51895776 ( 54) GAGGAAGC 1 chr5:148608626-148608706 ( 58) CCGGAAAC 1 chr2:191746777-191746857 ( 12) CCGGAAAC 1 chr12:65066813-65066893 ( 29) CCGGAAAC 1 chr20:31253262-31253342 ( 29) CCGGAAAC 1 chr3:4872971-4873051 ( 72) GAGGAAGC 1 chr17:3877666-3877746 ( 59) GAGGAAGC 1 chr3:128202094-128202174 ( 35) CCGGAAAC 1 chr7:149473633-149473713 ( 67) GAGGAAGC 1 chr7:153120110-153120190 ( 71) CAGGATAT 1 chr4:68389072-68389152 ( 48) CAGGATAT 1 chr17:76123435-76123515 ( 32) GCGGAAGC 1 chr19:34818908-34818988 ( 2) GCGGAAGC 1 chr11:46448298-46448378 ( 10) GCGGAAGC 1 chr17:72864748-72864828 ( 14) CCGGATAT 1 chr20:35185046-35185126 ( 29) CCGGATAT 1 chr5:159066169-159066249 ( 39) ACGGAAGC 1 chr19:45674697-45674777 ( 13) CCGGATGA 1 chr2:209794305-209794385 ( 21) GAGGAAAT 1 chr6:31702597-31702677 ( 51) AAGGATGT 1 chr2:44105148-44105228 ( 61) CAGGATGG 1 chr2:109883585-109883665 ( 13) CAGGATGG 1 chr10:44094869-44094949 ( 59) GAGGAAGA 1 chr8:107072704-107072784 ( 8) ACGGATGT 1 chr9:99337350-99337430 ( 13) ACGGATGT 1 chr2:26074903-26074983 ( 22) GCGGAAAT 1 chr7:632125-632205 ( 54) CCGGATAC 1 chr3:154745038-154745118 ( 59) AAGGAAGA 1 chr6:8064751-8064831 ( 66) GCGGATGC 1 chr1:19803523-19803603 ( 19) GAGGAAAC 1 chr5:141742480-141742560 ( 58) AAGGAAGG 1 chr11:3853197-3853277 ( 71) AAGGATGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.25601 E= 1.9e-091 -135 150 -82 -1370 121 80 -1370 -1370 -1370 -1370 192 -1370 -1370 -1370 192 -1370 212 -1370 -1370 -1370 171 -1370 -1370 6 -48 -1370 166 -1370 -113 9 -182 117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 1.9e-091 0.090226 0.759398 0.150376 0.000000 0.533835 0.466165 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.751880 0.000000 0.000000 0.248120 0.165414 0.000000 0.834586 0.000000 0.105263 0.285714 0.075188 0.533835 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGGAAGY MEME-2 regular expression -------------------------------------------------------------------------------- C[AC]GGA[AT]G[TC] -------------------------------------------------------------------------------- Time 8.11 secs. ******************************************************************************** ******************************************************************************** MOTIF TTATCWBY MEME-3 width = 8 sites = 38 llr = 325 E-value = 7.6e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::5:2 pos.-specific C ::::a:33 probability G ::::::4: matrix T aa:a:525 bits 2.1 **** 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ****** (12.3 bits) 0.8 ****** 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTATCAGT consensus TCC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:38770137-38770217 47 1.19e-05 tatgttcacc ttatcagt gatcagtgct chr2:65663473-65663553 14 1.19e-05 TAGCGCTCGG TTATCAGT TCCTTCCGGT chr1:112864802-112864882 26 1.19e-05 AGGAAATGTC TTATCAGT TTAGGAGGGA chr5:131450420-131450500 5 1.19e-05 atct ttatcagt tactcccact chr7:135614613-135614693 42 1.19e-05 TCTTCCGGAG TTATCAGT CCATCCATCC chr19:45674697-45674777 43 1.19e-05 AAGGGAAGTC TTATCAGT GTCGGTGCTA chr3:16351241-16351321 58 2.41e-05 cctgctttcc ttatctgt cgctgtgggt chr2:227637486-227637566 70 2.41e-05 TTTAAGTATC TTATCTGT AAG chr13:96090662-96090742 15 2.41e-05 TTTTTCCCCC TTATCTGT TATCTTGACC chr5:95059381-95059461 14 2.41e-05 AGTCTGCAGC TTATCTGT GTTGCTTTTC chr12:65066813-65066893 42 3.61e-05 GAAACTGTCC TTATCACT GAGGTTCAAA chr17:66434310-66434390 7 3.61e-05 GTCCTC TTATCACT TGCCATGCAT chr6:43855816-43855896 15 3.61e-05 taagctctTG TTATCACT GTAGTgtctc chr14:78914945-78915025 65 3.61e-05 AGGTGGCGCA TTATCACT AATTTCAT chr5:112267262-112267342 1 3.61e-05 . TTATCACT TAGCAGTCTC chr17:72864748-72864828 31 4.84e-05 TTCTTACCCC TTATCTCT CGTGGCTGAC chr18:20840397-20840477 51 4.84e-05 GCTGAGTTCT TTATCTCT CACTCAGACG chr20:21599452-21599532 60 4.84e-05 gctgctgacc ttatctct gtcttcatag chr1:22345650-22345730 49 5.90e-05 CCACACACAT TTATCATT GTTATTGAGT chr5:43772995-43773075 24 6.99e-05 ACAAGTTTTT TTATCTTT TCATGAATGA chr11:82719098-82719178 53 8.33e-05 AAGAACCTTC TTATCAGC TTATTCAGTC chr1:19835575-19835655 44 8.33e-05 acatcctgtt ttatcagc aaggtctttg chr7:77464037-77464117 51 9.71e-05 tcattgcttt ttatctgc tGTACTTCCT chr4:186123766-186123846 42 9.71e-05 AACTATGCCT TTATCTGC ATTTCCATGA chr8:91658695-91658775 33 1.22e-04 CAGTAACCTC TTATCAGA GCGGGCAGCT chr17:80158836-80158916 36 1.22e-04 ATGGAAGAGC TTATCAGA GAAGCCTGTC chr12:9917538-9917618 2 1.22e-04 C TTATCAGA CAGCTGCAGC chr17:3877666-3877746 35 1.48e-04 CCTCTCCCCG TTATCTCC CCAACCAGAC chr1:26109416-26109496 32 1.48e-04 AGTTTCTCGC TTATCTCC CCAGGTTGCT chr5:60116676-60116756 20 1.60e-04 TTCCTGAGCT TTATCATC TCTTGGCCAC chr3:128251952-128252032 41 1.84e-04 cttccgtttc ttatcttc tcaggaccat chr11:119312074-11931215 52 1.84e-04 ttgtagactc ttatcttc gccctgtgtc chrX:65235194-65235274 35 1.84e-04 AACCTCAGTC TTATCTTC CTCATTTCTG chr17:28054040-28054120 1 1.84e-04 . TTATCACA CATGTCTATA chr2:26074903-26074983 9 1.84e-04 CCATTACA TTATCTTC CACAAGCGGA chr10:104359628-10435970 7 1.96e-04 CCCTCC TTATCTCA GTCTTGGCCA chr5:159066169-159066249 29 2.06e-04 cattgccttg ttatcata aaacggaagc chr10:44094869-44094949 37 2.17e-04 ggaagcaggc ttatctta catggccaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:38770137-38770217 1.2e-05 46_[+3]_26 chr2:65663473-65663553 1.2e-05 13_[+3]_59 chr1:112864802-112864882 1.2e-05 25_[+3]_47 chr5:131450420-131450500 1.2e-05 4_[+3]_68 chr7:135614613-135614693 1.2e-05 41_[+3]_31 chr19:45674697-45674777 1.2e-05 42_[+3]_30 chr3:16351241-16351321 2.4e-05 57_[+3]_15 chr2:227637486-227637566 2.4e-05 69_[+3]_3 chr13:96090662-96090742 2.4e-05 14_[+3]_58 chr5:95059381-95059461 2.4e-05 13_[+3]_59 chr12:65066813-65066893 3.6e-05 41_[+3]_31 chr17:66434310-66434390 3.6e-05 6_[+3]_66 chr6:43855816-43855896 3.6e-05 14_[+3]_58 chr14:78914945-78915025 3.6e-05 64_[+3]_8 chr5:112267262-112267342 3.6e-05 [+3]_72 chr17:72864748-72864828 4.8e-05 30_[+3]_42 chr18:20840397-20840477 4.8e-05 50_[+3]_22 chr20:21599452-21599532 4.8e-05 59_[+3]_13 chr1:22345650-22345730 5.9e-05 48_[+3]_24 chr5:43772995-43773075 7e-05 23_[+3]_49 chr11:82719098-82719178 8.3e-05 52_[+3]_20 chr1:19835575-19835655 8.3e-05 43_[+3]_29 chr7:77464037-77464117 9.7e-05 50_[+3]_22 chr4:186123766-186123846 9.7e-05 41_[+3]_31 chr8:91658695-91658775 0.00012 32_[+3]_40 chr17:80158836-80158916 0.00012 35_[+3]_37 chr12:9917538-9917618 0.00012 1_[+3]_71 chr17:3877666-3877746 0.00015 34_[+3]_38 chr1:26109416-26109496 0.00015 31_[+3]_41 chr5:60116676-60116756 0.00016 19_[+3]_53 chr3:128251952-128252032 0.00018 40_[+3]_32 chr11:119312074-11931215 0.00018 51_[+3]_21 chrX:65235194-65235274 0.00018 34_[+3]_38 chr17:28054040-28054120 0.00018 [+3]_72 chr2:26074903-26074983 0.00018 8_[+3]_64 chr10:104359628-10435970 0.0002 6_[+3]_66 chr5:159066169-159066249 0.00021 28_[+3]_44 chr10:44094869-44094949 0.00022 36_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTATCWBY width=8 seqs=38 chr2:38770137-38770217 ( 47) TTATCAGT 1 chr2:65663473-65663553 ( 14) TTATCAGT 1 chr1:112864802-112864882 ( 26) TTATCAGT 1 chr5:131450420-131450500 ( 5) TTATCAGT 1 chr7:135614613-135614693 ( 42) TTATCAGT 1 chr19:45674697-45674777 ( 43) TTATCAGT 1 chr3:16351241-16351321 ( 58) TTATCTGT 1 chr2:227637486-227637566 ( 70) TTATCTGT 1 chr13:96090662-96090742 ( 15) TTATCTGT 1 chr5:95059381-95059461 ( 14) TTATCTGT 1 chr12:65066813-65066893 ( 42) TTATCACT 1 chr17:66434310-66434390 ( 7) TTATCACT 1 chr6:43855816-43855896 ( 15) TTATCACT 1 chr14:78914945-78915025 ( 65) TTATCACT 1 chr5:112267262-112267342 ( 1) TTATCACT 1 chr17:72864748-72864828 ( 31) TTATCTCT 1 chr18:20840397-20840477 ( 51) TTATCTCT 1 chr20:21599452-21599532 ( 60) TTATCTCT 1 chr1:22345650-22345730 ( 49) TTATCATT 1 chr5:43772995-43773075 ( 24) TTATCTTT 1 chr11:82719098-82719178 ( 53) TTATCAGC 1 chr1:19835575-19835655 ( 44) TTATCAGC 1 chr7:77464037-77464117 ( 51) TTATCTGC 1 chr4:186123766-186123846 ( 42) TTATCTGC 1 chr8:91658695-91658775 ( 33) TTATCAGA 1 chr17:80158836-80158916 ( 36) TTATCAGA 1 chr12:9917538-9917618 ( 2) TTATCAGA 1 chr17:3877666-3877746 ( 35) TTATCTCC 1 chr1:26109416-26109496 ( 32) TTATCTCC 1 chr5:60116676-60116756 ( 20) TTATCATC 1 chr3:128251952-128252032 ( 41) TTATCTTC 1 chr11:119312074-11931215 ( 52) TTATCTTC 1 chrX:65235194-65235274 ( 35) TTATCTTC 1 chr17:28054040-28054120 ( 1) TTATCACA 1 chr2:26074903-26074983 ( 9) TTATCTTC 1 chr10:104359628-10435970 ( 7) TTATCTCA 1 chr5:159066169-159066249 ( 29) TTATCATA 1 chr10:44094869-44094949 ( 37) TTATCTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.27321 E= 7.6e-009 -1189 -1189 -1189 208 -1189 -1189 -1189 208 212 -1189 -1189 -1189 -1189 -1189 -1189 208 -1189 190 -1189 -1189 119 -1189 -1189 100 -1189 24 76 0 -32 11 -1189 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 7.6e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.526316 0.000000 0.000000 0.473684 0.000000 0.315789 0.447368 0.236842 0.184211 0.289474 0.000000 0.526316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWBY MEME-3 regular expression -------------------------------------------------------------------------------- TTATC[AT][GCT][TC] -------------------------------------------------------------------------------- Time 11.34 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAKARGR MEME-4 width = 8 sites = 29 llr = 251 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:a:a5:6 pos.-specific C ::::::3: probability G :a:4:574 matrix T :::6:::: bits 2.1 * * * 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATAGGA consensus G ACG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:32442505-32442585 23 2.31e-05 CTGAGGCCAG AGATAGGA TCAGAGCACA chr12:124744408-12474448 27 2.31e-05 CTTTCTCTGG AGATAAGA AATAAGTTCA chr14:71597502-71597582 2 2.31e-05 g agatagga ggtcagcaca chr9:99337350-99337430 52 2.31e-05 tgtcctccgg agataaga gggtggagga chr6:158830617-158830697 57 4.96e-05 AGCTACTGGG AGATAAGG CTGCAGCTGT chr20:31253262-31253342 56 4.96e-05 GGTGGGAGGG AGATAAGG CCCTGCCCAA chr17:46555813-46555893 63 4.96e-05 CACAGAGTAT AGATAAGG AACAACCGCA chr22:43355888-43355968 52 4.96e-05 TTGGCTGCCG AGATAAGG TCATTCCCAT chr21:43472102-43472182 14 4.96e-05 TGTGTGGTGC AGATAAGG GGAGTGAGAG chr19:16197370-16197450 38 4.96e-05 GCATCTGCTG AGATAGGG AGGACACCGG chr11:118979432-11897951 57 4.96e-05 CATGAGATGG AGATAAGG TGGGAGGTAG chr10:44094869-44094949 70 7.54e-05 aggaagagag agagagga ggt chr5:148608626-148608706 49 7.54e-05 GAAGCAACTC AGAGAGGA ACCGGAAACG chr3:5236592-5236672 25 7.54e-05 CCTGAATCTC AGAGAGGA GATGACTCAC chr12:47670777-47670857 47 7.54e-05 AAGTATCCAG AGAGAAGA AGGAAAGGTA chr21:30204574-30204654 65 7.54e-05 AGCTGGGTTG AGAGAGGA AATAACAA chr5:141736612-141736692 61 7.54e-05 ACCAAACCAC AGAGAGGA AATGATTGTA chr17:73068212-73068292 37 9.87e-05 TTGGGCTGGA AGATAACA CAGCCTCTTC chr17:73854926-73855006 35 9.87e-05 tgcagtgcag agataaca agcttgacca chr11:34831270-34831350 14 9.87e-05 ttgtcattaa agatagca atctggcttc chr9:136009308-136009388 55 9.87e-05 TCCAGGAAGC AGATAGCA GAGGCCGAGG chr19:35453452-35453532 29 9.87e-05 ttgtcagtcc agatagca atctggcttc chr12:29396211-29396291 28 9.87e-05 ttgtcactgg agatagca atctggtttc chr12:25104868-25104948 73 1.28e-04 agctttcagc agagaggg chr22:21213141-21213221 37 1.28e-04 GCTGCAGGGG AGAGAGGG GATGGACAGT chr4:185276487-185276567 64 1.28e-04 TGTTGCTGGA AGAGAAGG GAAATGCAT chr19:13345523-13345603 6 1.28e-04 TCGGA AGAGAAGG CCGGCACGTC chr7:99588737-99588817 26 1.55e-04 AAAGGCCATG AGATAACG GTCATCCGGT chr3:152939731-152939811 43 1.81e-04 TCTACTATCC AGAGAGCA GGAATGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:32442505-32442585 2.3e-05 22_[+4]_50 chr12:124744408-12474448 2.3e-05 26_[+4]_46 chr14:71597502-71597582 2.3e-05 1_[+4]_71 chr9:99337350-99337430 2.3e-05 51_[+4]_21 chr6:158830617-158830697 5e-05 56_[+4]_16 chr20:31253262-31253342 5e-05 55_[+4]_17 chr17:46555813-46555893 5e-05 62_[+4]_10 chr22:43355888-43355968 5e-05 51_[+4]_21 chr21:43472102-43472182 5e-05 13_[+4]_59 chr19:16197370-16197450 5e-05 37_[+4]_35 chr11:118979432-11897951 5e-05 56_[+4]_16 chr10:44094869-44094949 7.5e-05 69_[+4]_3 chr5:148608626-148608706 7.5e-05 48_[+4]_24 chr3:5236592-5236672 7.5e-05 24_[+4]_48 chr12:47670777-47670857 7.5e-05 46_[+4]_26 chr21:30204574-30204654 7.5e-05 64_[+4]_8 chr5:141736612-141736692 7.5e-05 60_[+4]_12 chr17:73068212-73068292 9.9e-05 36_[+4]_36 chr17:73854926-73855006 9.9e-05 34_[+4]_38 chr11:34831270-34831350 9.9e-05 13_[+4]_59 chr9:136009308-136009388 9.9e-05 54_[+4]_18 chr19:35453452-35453532 9.9e-05 28_[+4]_44 chr12:29396211-29396291 9.9e-05 27_[+4]_45 chr12:25104868-25104948 0.00013 72_[+4] chr22:21213141-21213221 0.00013 36_[+4]_36 chr4:185276487-185276567 0.00013 63_[+4]_9 chr19:13345523-13345603 0.00013 5_[+4]_67 chr7:99588737-99588817 0.00016 25_[+4]_47 chr3:152939731-152939811 0.00018 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAKARGR width=8 seqs=29 chr11:32442505-32442585 ( 23) AGATAGGA 1 chr12:124744408-12474448 ( 27) AGATAAGA 1 chr14:71597502-71597582 ( 2) AGATAGGA 1 chr9:99337350-99337430 ( 52) AGATAAGA 1 chr6:158830617-158830697 ( 57) AGATAAGG 1 chr20:31253262-31253342 ( 56) AGATAAGG 1 chr17:46555813-46555893 ( 63) AGATAAGG 1 chr22:43355888-43355968 ( 52) AGATAAGG 1 chr21:43472102-43472182 ( 14) AGATAAGG 1 chr19:16197370-16197450 ( 38) AGATAGGG 1 chr11:118979432-11897951 ( 57) AGATAAGG 1 chr10:44094869-44094949 ( 70) AGAGAGGA 1 chr5:148608626-148608706 ( 49) AGAGAGGA 1 chr3:5236592-5236672 ( 25) AGAGAGGA 1 chr12:47670777-47670857 ( 47) AGAGAAGA 1 chr21:30204574-30204654 ( 65) AGAGAGGA 1 chr5:141736612-141736692 ( 61) AGAGAGGA 1 chr17:73068212-73068292 ( 37) AGATAACA 1 chr17:73854926-73855006 ( 35) AGATAACA 1 chr11:34831270-34831350 ( 14) AGATAGCA 1 chr9:136009308-136009388 ( 55) AGATAGCA 1 chr19:35453452-35453532 ( 29) AGATAGCA 1 chr12:29396211-29396291 ( 28) AGATAGCA 1 chr12:25104868-25104948 ( 73) AGAGAGGG 1 chr22:21213141-21213221 ( 37) AGAGAGGG 1 chr4:185276487-185276567 ( 64) AGAGAAGG 1 chr19:13345523-13345603 ( 6) AGAGAAGG 1 chr7:99588737-99588817 ( 26) AGATAACG 1 chr3:152939731-152939811 ( 43) AGAGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.5e-001 212 -1150 -1150 -1150 -1150 -1150 192 -1150 212 -1150 -1150 -1150 -1150 -1150 52 139 212 -1150 -1150 -1150 107 -1150 97 -1150 -1150 4 145 -1150 135 -1150 64 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.5e-001 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.379310 0.620690 1.000000 0.000000 0.000000 0.000000 0.482759 0.000000 0.517241 0.000000 0.000000 0.275862 0.724138 0.000000 0.586207 0.000000 0.413793 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKARGR MEME-4 regular expression -------------------------------------------------------------------------------- AGA[TG]A[GA][GC][AG] -------------------------------------------------------------------------------- Time 14.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAGGRA MEME-5 width = 8 sites = 27 llr = 230 E-value = 3.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7a1:47 pos.-specific C ::1::::: probability G aa2:9a62 matrix T :::::::1 bits 2.1 * 1.9 ** * * 1.7 ** * * 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 ** ***** (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGGGA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:2082881-2082961 10 1.59e-05 CCGCGCTTG GGAAGGGA AATCGGGTCC chr19:45927693-45927773 42 1.59e-05 gcttcctgga ggaaggga catctgagca chr19:45674697-45674777 31 1.59e-05 AAGGAAAGGT GGAAGGGA AGTCTTATCA chr8:22926682-22926762 31 1.59e-05 GGAGGGGAGG GGAAGGGA CCGGAACTAA chr6:31702597-31702677 62 1.59e-05 AGGATGTGGG GGAAGGGA CAGTGAGGAT chr11:3853197-3853277 44 1.59e-05 TTCCGGGCTG GGAAGGGA ACGAGGACCG chr12:89629567-89629647 42 1.59e-05 CTAAAGTACA GGAAGGga ggtttccttc chr16:53552774-53552854 33 1.59e-05 GCAGGATGTG GGAAGGGA ACGGAAGGAA chr12:123591725-12359180 47 2.97e-05 CGGGGAGTCC GGAAGGAA GCCACTGCCT chr1:51899450-51899530 61 2.97e-05 GACAGAGACA GGAAGGAA ATGGAAGCTA chr7:73149201-73149281 21 4.80e-05 GGTGAAGGGA GGAAGGGG GCTGAGTGTG chr11:124746324-12474640 64 6.63e-05 GGACGGATCC GGGAGGGA GCCAGGCGG chr17:71007389-71007469 68 6.63e-05 gagataagca gggaggga ccagG chr6:26389611-26389691 31 8.22e-05 aaaggcctga ggaaggag cttgtctggc chr1:112864802-112864882 6 8.22e-05 GAAGG GGAAGGAG ACAGGAAATG chr13:114103526-11410360 54 8.22e-05 AGGCTCACCG GGAAGGAG GGACCCTGTT chr11:46448298-46448378 73 8.22e-05 CAAAATTTTA GGAAGGAG chr18:812950-813030 15 1.17e-04 CTCCTTCCGA GGCAGGGA TCCTGTCCCT chr5:175123610-175123690 42 1.17e-04 GGAAGTGGAT GGCAGGGA GGTGGGGGAG chr17:28054040-28054120 53 1.17e-04 TACAGCATTA GGGAGGAA CAGCTGCAGA chr19:16197370-16197450 18 1.17e-04 AGCAGGAAGT GGGAGGAA ATGCATCTGC chr19:7702607-7702687 4 1.33e-04 GGG GGAAGGGT GGAGGGCGCC chr14:91267758-91267838 63 1.63e-04 cacaggatga ggaaagga gagggttgaa chr11:118979432-11897951 32 1.63e-04 CAGGAAGTGG GGCAGGAA GCGTGGTCAT chr7:149473633-149473713 22 1.63e-04 CTGCCAGGCA GGAAAGGA GTGACAGGCC chr6:158830617-158830697 22 1.77e-04 CAAATAGGCT GGAAGGAT TTAGAGAACA chr1:36839537-36839617 45 1.98e-04 AGTGGGAAGT GGGAGGGG CGGTCAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:2082881-2082961 1.6e-05 9_[+5]_63 chr19:45927693-45927773 1.6e-05 41_[+5]_31 chr19:45674697-45674777 1.6e-05 30_[+5]_42 chr8:22926682-22926762 1.6e-05 30_[+5]_42 chr6:31702597-31702677 1.6e-05 61_[+5]_11 chr11:3853197-3853277 1.6e-05 43_[+5]_29 chr12:89629567-89629647 1.6e-05 41_[+5]_31 chr16:53552774-53552854 1.6e-05 32_[+5]_40 chr12:123591725-12359180 3e-05 46_[+5]_26 chr1:51899450-51899530 3e-05 60_[+5]_12 chr7:73149201-73149281 4.8e-05 20_[+5]_52 chr11:124746324-12474640 6.6e-05 63_[+5]_9 chr17:71007389-71007469 6.6e-05 67_[+5]_5 chr6:26389611-26389691 8.2e-05 30_[+5]_42 chr1:112864802-112864882 8.2e-05 5_[+5]_67 chr13:114103526-11410360 8.2e-05 53_[+5]_19 chr11:46448298-46448378 8.2e-05 72_[+5] chr18:812950-813030 0.00012 14_[+5]_58 chr5:175123610-175123690 0.00012 41_[+5]_31 chr17:28054040-28054120 0.00012 52_[+5]_20 chr19:16197370-16197450 0.00012 17_[+5]_55 chr19:7702607-7702687 0.00013 3_[+5]_69 chr14:91267758-91267838 0.00016 62_[+5]_10 chr11:118979432-11897951 0.00016 31_[+5]_41 chr7:149473633-149473713 0.00016 21_[+5]_51 chr6:158830617-158830697 0.00018 21_[+5]_51 chr1:36839537-36839617 0.0002 44_[+5]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGGRA width=8 seqs=27 chr20:2082881-2082961 ( 10) GGAAGGGA 1 chr19:45927693-45927773 ( 42) GGAAGGGA 1 chr19:45674697-45674777 ( 31) GGAAGGGA 1 chr8:22926682-22926762 ( 31) GGAAGGGA 1 chr6:31702597-31702677 ( 62) GGAAGGGA 1 chr11:3853197-3853277 ( 44) GGAAGGGA 1 chr12:89629567-89629647 ( 42) GGAAGGGA 1 chr16:53552774-53552854 ( 33) GGAAGGGA 1 chr12:123591725-12359180 ( 47) GGAAGGAA 1 chr1:51899450-51899530 ( 61) GGAAGGAA 1 chr7:73149201-73149281 ( 21) GGAAGGGG 1 chr11:124746324-12474640 ( 64) GGGAGGGA 1 chr17:71007389-71007469 ( 68) GGGAGGGA 1 chr6:26389611-26389691 ( 31) GGAAGGAG 1 chr1:112864802-112864882 ( 6) GGAAGGAG 1 chr13:114103526-11410360 ( 54) GGAAGGAG 1 chr11:46448298-46448378 ( 73) GGAAGGAG 1 chr18:812950-813030 ( 15) GGCAGGGA 1 chr5:175123610-175123690 ( 42) GGCAGGGA 1 chr17:28054040-28054120 ( 53) GGGAGGAA 1 chr19:16197370-16197450 ( 18) GGGAGGAA 1 chr19:7702607-7702687 ( 4) GGAAGGGT 1 chr14:91267758-91267838 ( 63) GGAAAGGA 1 chr11:118979432-11897951 ( 32) GGCAGGAA 1 chr7:149473633-149473713 ( 22) GGAAAGGA 1 chr6:158830617-158830697 ( 22) GGAAGGAT 1 chr1:36839537-36839617 ( 45) GGGAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 3.8e+001 -1140 -1140 192 -1140 -1140 -1140 192 -1140 161 -127 -52 -1140 212 -1140 -1140 -1140 -163 -1140 181 -1140 -1140 -1140 192 -1140 69 -1140 125 -1140 161 -1140 -25 -168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.8e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.703704 0.111111 0.185185 0.000000 1.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.925926 0.000000 0.000000 0.000000 1.000000 0.000000 0.370370 0.000000 0.629630 0.000000 0.703704 0.000000 0.222222 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGRA MEME-5 regular expression -------------------------------------------------------------------------------- GGAAGG[GA][AG] -------------------------------------------------------------------------------- Time 17.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:53552774-53552854 1.03e-03 23_[+2(8.12e-05)]_1_[+5(1.59e-05)]_\ 2_[+5(2.97e-05)]_30 chr1:51899450-51899530 4.15e-06 11_[+2(8.12e-05)]_8_[+1(6.39e-05)]_\ 25_[+5(2.97e-05)]_12 chr8:91013167-91013247 4.43e-02 35_[+2(6.64e-05)]_37 chr12:89629567-89629647 1.07e-04 41_[+5(1.59e-05)]_12_[+2(4.74e-05)]_\ 11 chr7:115851169-115851249 3.34e-02 4_[+2(1.44e-05)]_68 chr8:108317527-108317607 6.32e-03 80 chr5:89953758-89953838 1.29e-01 25_[+2(8.12e-05)]_47 chr11:3853197-3853277 7.16e-04 43_[+5(1.59e-05)]_29 chr7:149473633-149473713 1.72e-03 80 chr5:95059381-95059461 3.43e-03 13_[+3(2.41e-05)]_25_[+1(1.61e-05)]_\ 26 chrX:153192353-153192433 6.02e-04 23_[+1(8.21e-05)]_49 chr10:72124377-72124457 1.13e-01 29_[+1(3.41e-05)]_43 chr5:112267262-112267342 3.25e-03 [+3(3.61e-05)]_16_[+1(1.61e-05)]_48 chr17:71007389-71007469 1.68e-03 33_[+5(2.97e-05)]_26_[+5(6.63e-05)]_\ 5 chr21:46255161-46255241 2.20e-01 80 chr9:95826784-95826864 1.31e-01 38_[+2(8.12e-05)]_34 chr2:109883585-109883665 3.72e-02 80 chr10:74036824-74036904 1.04e-01 80 chr12:498459-498539 7.68e-03 7_[+2(3.11e-05)]_65 chr5:141852028-141852108 9.72e-02 80 chr2:26074903-26074983 2.41e-02 80 chr11:46148868-46148948 1.23e-01 80 chr17:38593605-38593685 8.10e-03 39_[+2(1.44e-05)]_33 chr11:63299135-63299215 6.38e-02 80 chr19:13345523-13345603 3.21e-03 80 chr17:47910308-47910388 9.27e-03 44_[+1(1.61e-05)]_28 chr19:19256935-19257015 8.55e-03 51_[+2(3.11e-05)]_21 chr11:126350743-12635082 1.16e-01 39_[+1(3.41e-05)]_33 chr10:88648877-88648957 9.76e-02 80 chr11:46448298-46448378 1.82e-02 72_[+5(8.22e-05)] chr12:29396211-29396291 1.60e-03 27_[+4(9.87e-05)]_45 chr11:67030320-67030400 2.18e-02 34_[+2(3.11e-05)]_38 chrX:39710165-39710245 2.60e-02 28_[+2(6.64e-05)]_44 chr6:36095454-36095534 2.33e-01 37_[+1(6.39e-05)]_35 chr22:22875413-22875493 6.34e-02 53_[+2(9.84e-05)]_19 chr20:35185046-35185126 1.39e-01 80 chr4:187124714-187124794 3.30e-01 80 chr9:95882311-95882391 6.58e-02 80 chr11:113464569-11346464 6.51e-03 24_[+4(7.54e-05)]_48 chr9:99337350-99337430 7.44e-04 51_[+4(2.31e-05)]_21 chr19:35453452-35453532 6.10e-04 28_[+4(9.87e-05)]_6_[+1(1.61e-05)]_\ 30 chr7:66594235-66594315 3.22e-02 39_[+2(6.64e-05)]_33 chr19:34818908-34818988 2.26e-01 80 chr7:632125-632205 4.72e-01 80 chr4:185276487-185276567 2.86e-03 80 chrX:49023741-49023821 6.19e-02 80 chr14:78914945-78915025 8.72e-03 22_[+2(9.84e-05)]_34_[+3(3.61e-05)]_\ 8 chr12:47754643-47754723 5.87e-05 19_[+5(2.97e-05)]_53 chr11:118979432-11897951 8.26e-05 21_[+2(1.44e-05)]_4_[+2(4.74e-05)]_\ 15_[+4(4.96e-05)]_16 chr3:128202094-128202174 5.38e-03 80 chr3:195837362-195837442 9.97e-03 80 chr7:106012184-106012264 1.50e-02 51_[+1(3.41e-05)]_21 chr6:30650472-30650552 1.68e-01 43_[+1(1.61e-05)]_29 chr11:67055899-67055979 1.57e-01 80 chr6:147092300-147092380 5.82e-02 80 chr13:41579134-41579214 2.56e-04 31_[+2(4.74e-05)]_41 chr15:89618069-89618149 1.87e-02 80 chr6:20292068-20292148 1.81e-01 80 chr8:144371757-144371837 7.37e-03 20_[+2(3.11e-05)]_52 chr6:31702597-31702677 6.05e-06 41_[+1(1.61e-05)]_12_[+5(1.59e-05)]_\ 11 chr8:22926682-22926762 3.52e-02 30_[+5(1.59e-05)]_42 chr4:15651718-15651798 8.75e-02 80 chr19:7702607-7702687 6.79e-02 80 chr3:10284163-10284243 2.16e-02 28_[+2(8.12e-05)]_44 chr6:147271561-147271641 2.21e-04 41_[+2(1.44e-05)]_31 chr1:23429976-23430056 8.02e-02 80 chr9:99019227-99019307 2.62e-02 72_[+1(8.21e-05)] chr12:11951965-11952045 9.54e-04 24_[+1(1.61e-05)]_48 chr12:96795182-96795262 4.24e-02 40_[+2(9.84e-05)]_32 chr12:9917538-9917618 7.12e-03 80 chr1:212687543-212687623 1.29e-03 19_[+1(1.61e-05)]_53 chr19:45674697-45674777 5.30e-05 30_[+5(1.59e-05)]_4_[+3(1.19e-05)]_\ 30 chr1:19835575-19835655 9.06e-03 43_[+3(8.33e-05)]_29 chr12:40019920-40020000 3.92e-03 29_[+5(2.97e-05)]_43 chr11:69064670-69064750 4.12e-04 14_[+1(6.39e-05)]_8_[+2(9.84e-05)]_\ 42 chr5:139555332-139555412 7.55e-02 80 chr20:21599452-21599532 5.70e-03 10_[+1(1.61e-05)]_41_[+3(4.84e-05)]_\ 13 chr1:142890987-142891067 8.95e-03 80 chr13:114103526-11410360 4.23e-03 19_[+5(8.22e-05)]_26_[+5(8.22e-05)]_\ 19 chr14:21512582-21512662 2.58e-01 80 chr16:68113663-68113743 9.57e-04 25_[+5(2.97e-05)]_47 chr19:16197370-16197450 1.09e-04 9_[+2(1.44e-05)]_20_[+4(4.96e-05)]_\ 35 chr2:69076958-69077038 3.81e-02 35_[+2(6.64e-05)]_37 chr12:50056937-50057017 1.25e-01 13_[+1(6.39e-05)]_33_[+1(6.39e-05)]_\ 18 chr13:96090662-96090742 3.12e-03 14_[+3(2.41e-05)]_12_[+1(1.61e-05)]_\ 38 chr1:182399940-182400020 1.54e-02 29_[+2(3.11e-05)]_43 chr21:43472102-43472182 2.37e-03 13_[+4(4.96e-05)]_59 chr9:136009308-136009388 1.30e-04 46_[+2(4.74e-05)]_[+4(9.87e-05)]_18 chr1:227015847-227015927 2.85e-02 80 chr1:26109416-26109496 3.21e-02 80 chr5:42876680-42876760 7.41e-02 80 chr16:70438359-70438439 2.18e-02 44_[+1(8.21e-05)]_28 chr8:91986681-91986761 7.13e-02 23_[+1(1.61e-05)]_49 chr12:123591725-12359180 1.01e-03 8_[+2(1.44e-05)]_30_[+5(2.97e-05)]_\ 26 chr22:21213141-21213221 8.01e-03 72_[+2(9.84e-05)] chr7:135614613-135614693 5.36e-04 41_[+3(1.19e-05)]_31 chr6:88441652-88441732 9.82e-02 26_[+1(1.61e-05)]_46 chr4:8193308-8193388 3.36e-01 80 chr3:154745038-154745118 8.62e-03 4_[+1(1.61e-05)]_68 chr2:209795024-209795104 4.29e-03 21_[+1(1.61e-05)]_51 chr16:16092525-16092605 2.00e-01 80 chr5:60116676-60116756 4.90e-05 8_[+1(6.39e-05)]_64 chr4:54775024-54775104 7.61e-04 54_[+2(1.44e-05)]_18 chr10:69550820-69550900 1.16e-02 80 chr11:77010753-77010833 2.74e-01 24_[+2(9.84e-05)]_48 chr1:167028492-167028572 4.64e-02 80 chr17:76123435-76123515 2.45e-01 80 chr7:76178499-76178579 4.30e-02 67_[+1(3.41e-05)]_5 chr5:66300354-66300434 3.57e-01 80 chr5:141736612-141736692 1.81e-03 30_[+2(8.12e-05)]_22_[+4(7.54e-05)]_\ 12 chr4:68389072-68389152 2.79e-01 80 chr21:30204574-30204654 2.27e-03 17_[+2(8.12e-05)]_39_[+4(7.54e-05)]_\ 8 chr6:105153122-105153202 5.15e-02 23_[+2(8.12e-05)]_49 chr17:3877666-3877746 4.08e-05 16_[+1(1.61e-05)]_56 chr2:227637486-227637566 1.34e-06 28_[+2(4.74e-05)]_15_[+1(1.61e-05)]_\ 10_[+3(2.41e-05)]_3 chr11:108093748-10809382 8.32e-03 31_[+2(6.64e-05)]_41 chr1:40525279-40525359 4.66e-02 50_[+1(8.21e-05)]_22 chr5:148810003-148810083 1.22e-01 80 chr11:34831270-34831350 3.08e-03 13_[+4(9.87e-05)]_6_[+1(8.21e-05)]_\ 23_[+1(6.39e-05)]_14 chr1:161592059-161592139 3.19e-01 80 chr17:28054040-28054120 3.74e-04 80 chr12:102874361-10287444 3.47e-03 80 chr7:1105500-1105580 2.91e-01 80 chr7:72349796-72349876 3.47e-02 48_[+1(3.41e-05)]_24 chr1:36181213-36181293 6.34e-01 80 chr8:107072704-107072784 5.50e-02 80 chr21:45627997-45628077 4.36e-02 80 chr3:4872971-4873051 1.00e-04 68_[+4(7.54e-05)]_4 chr12:25104868-25104948 5.12e-02 80 chr14:71597502-71597582 3.18e-03 1_[+4(2.31e-05)]_42_[+2(8.12e-05)]_\ 21 chr11:124746324-12474640 5.09e-02 63_[+5(6.63e-05)]_9 chr5:141742480-141742560 4.81e-02 80 chr4:186123766-186123846 1.01e-03 14_[+2(6.64e-05)]_19_[+3(9.71e-05)]_\ 31 chr5:131450420-131450500 3.71e-03 4_[+3(1.19e-05)]_68 chr11:120215210-12021529 5.91e-03 80 chr3:155052788-155052868 1.55e-03 37_[+1(6.39e-05)]_1_[+2(4.74e-05)]_\ 26 chr1:112864802-112864882 7.18e-06 5_[+5(8.22e-05)]_12_[+3(1.19e-05)]_\ 47 chr19:610873-610953 1.34e-03 2_[+2(6.64e-05)]_57_[+1(8.21e-05)]_\ 5 chr22:22417667-22417747 1.82e-01 80 chr1:16971117-16971197 9.97e-01 80 chr16:75109281-75109361 3.70e-01 80 chr20:42588001-42588081 7.87e-05 25_[+1(6.39e-05)]_47 chr12:9519934-9520014 1.44e-01 80 chr2:48338494-48338574 2.34e-02 80 chr6:43855816-43855896 1.17e-01 14_[+3(3.61e-05)]_58 chr2:65663473-65663553 2.90e-03 13_[+3(1.19e-05)]_2_[+1(3.41e-05)]_\ 49 chr22:18403201-18403281 6.03e-02 80 chr12:124744408-12474448 3.26e-04 26_[+4(2.31e-05)]_12_[+1(1.61e-05)]_\ 26 chr12:47670777-47670857 2.61e-04 32_[+2(1.44e-05)]_6_[+4(7.54e-05)]_\ 26 chr2:11970473-11970553 8.62e-04 [+2(1.44e-05)]_48_[+1(1.61e-05)]_16 chr18:20840397-20840477 6.88e-03 50_[+3(4.84e-05)]_22 chr14:91267758-91267838 8.87e-03 80 chr6:35265528-35265608 2.29e-01 80 chr4:140216959-140217039 9.17e-02 51_[+2(3.11e-05)]_21 chr17:13210098-13210178 1.60e-02 80 chr2:65590795-65590875 8.64e-02 80 chr15:90944221-90944301 4.43e-04 36_[+2(3.11e-05)]_36 chrX:40032114-40032194 7.34e-02 80 chr22:19976537-19976617 9.78e-02 80 chr6:26389611-26389691 4.81e-03 30_[+5(8.22e-05)]_42 chr6:21987815-21987895 2.77e-02 31_[+2(3.11e-05)]_41 chr7:73149201-73149281 1.69e-03 20_[+5(4.80e-05)]_22_[+2(3.11e-05)]_\ 22 chrX:65235194-65235274 1.79e-02 52_[+1(6.39e-05)]_20 chr1:85710570-85710650 1.42e-02 80 chr1:43222760-43222840 4.61e-02 34_[+2(3.11e-05)]_38 chr20:45946112-45946192 4.37e-01 80 chr17:66434310-66434390 2.57e-04 6_[+3(3.61e-05)]_66 chr1:40506397-40506477 2.12e-02 24_[+2(6.64e-05)]_48 chr6:131314686-131314766 1.23e-02 11_[+2(1.44e-05)]_61 chr17:45955136-45955216 1.43e-01 80 chr4:86501885-86501965 1.13e-03 39_[+5(4.80e-05)]_33 chr20:49546014-49546094 2.70e-01 80 chr1:41341539-41341619 5.70e-03 80 chr6:33398777-33398857 2.02e-01 80 chr22:43355888-43355968 2.83e-03 34_[+1(6.39e-05)]_9_[+4(4.96e-05)]_\ 21 chr3:16351241-16351321 2.66e-03 13_[+1(6.39e-05)]_36_[+3(2.41e-05)]_\ 15 chr6:144263393-144263473 6.86e-03 4_[+2(1.44e-05)]_68 chr22:21921888-21921968 4.85e-02 72_[+2(1.44e-05)] chr6:147235771-147235851 9.98e-03 38_[+1(1.61e-05)]_34 chr12:93638088-93638168 5.18e-03 54_[+2(6.64e-05)]_18 chr17:46555813-46555893 3.25e-04 34_[+2(3.11e-05)]_20_[+4(4.96e-05)]_\ 10 chr8:22596898-22596978 4.32e-02 80 chr19:42954603-42954683 3.77e-02 47_[+1(1.61e-05)]_25 chr11:32442505-32442585 5.77e-03 22_[+4(2.31e-05)]_50 chr17:73854926-73855006 8.81e-03 34_[+4(9.87e-05)]_38 chr20:31253262-31253342 1.04e-03 55_[+4(4.96e-05)]_17 chr10:104359628-10435970 2.39e-02 80 chr6:33548009-33548089 1.41e-01 80 chr17:62502854-62502934 6.36e-02 17_[+2(3.11e-05)]_55 chr1:36839537-36839617 1.70e-03 13_[+4(7.54e-05)]_59 chr15:62411742-62411822 3.41e-02 51_[+1(1.61e-05)]_21 chr17:27253196-27253276 8.47e-03 80 chr17:80158836-80158916 1.18e-04 60_[+1(1.61e-05)]_12 chr3:5236592-5236672 1.21e-03 24_[+4(7.54e-05)]_20_[+1(1.61e-05)]_\ 20 chr3:43435610-43435690 2.88e-03 46_[+1(1.61e-05)]_26 chr1:22345650-22345730 4.04e-04 48_[+3(5.90e-05)]_24 chr5:148941575-148941655 9.44e-02 80 chr17:60759097-60759177 4.16e-01 80 chr13:48736127-48736207 1.54e-01 80 chr8:30601870-30601950 3.74e-01 80 chr19:45927104-45927184 3.84e-01 80 chr20:46768370-46768450 1.49e-01 80 chr19:52160249-52160329 5.32e-01 80 chr2:11272914-11272994 3.80e-02 42_[+2(6.64e-05)]_30 chr20:361525-361605 8.10e-01 80 chr7:99588737-99588817 1.14e-02 80 chr19:8258979-8259059 9.01e-02 80 chr5:175123610-175123690 4.14e-03 29_[+2(1.44e-05)]_30_[+2(1.44e-05)]_\ 5 chr22:17847989-17848069 2.21e-03 80 chr3:152939731-152939811 5.48e-02 80 chr17:73068212-73068292 6.48e-04 36_[+4(9.87e-05)]_36 chr2:209794305-209794385 3.27e-02 80 chr12:65066813-65066893 1.34e-03 41_[+3(3.61e-05)]_31 chr4:170543510-170543590 6.54e-04 10_[+1(6.39e-05)]_32_[+2(4.74e-05)]_\ 22 chr17:74176079-74176159 2.50e-03 80 chr2:38770137-38770217 9.58e-05 10_[+2(9.84e-05)]_28_[+3(1.19e-05)]_\ 26 chr11:119312074-11931215 3.68e-02 80 chr2:191746777-191746857 3.97e-02 80 chr6:8064751-8064831 4.08e-01 80 chr1:110438602-110438682 6.15e-03 80 chr5:148608626-148608706 1.93e-03 48_[+4(7.54e-05)]_24 chr6:158830617-158830697 1.56e-04 37_[+2(1.44e-05)]_11_[+4(4.96e-05)]_\ 16 chr22:22378219-22378299 9.77e-01 80 chr17:65362654-65362734 5.77e-02 40_[+2(3.11e-05)]_32 chr19:45927693-45927773 3.59e-04 41_[+5(1.59e-05)]_31 chr6:99842014-99842094 1.23e-01 80 chr8:91658695-91658775 9.66e-02 80 chr19:1905745-1905825 2.31e-01 8_[+1(3.41e-05)]_64 chr7:77464037-77464117 8.41e-03 50_[+3(9.71e-05)]_4_[+1(1.61e-05)]_\ 10 chr5:5598866-5598946 2.62e-02 37_[+1(6.39e-05)]_35 chr20:2082881-2082961 2.42e-02 9_[+5(1.59e-05)]_63 chr5:43772995-43773075 2.59e-04 23_[+3(6.99e-05)]_32_[+2(1.44e-05)]_\ 9 chr16:3018899-3018979 1.11e-01 8_[+2(9.84e-05)]_64 chr5:159066169-159066249 3.81e-02 80 chr10:44094869-44094949 6.38e-04 69_[+4(7.54e-05)]_3 chr1:19803523-19803603 4.24e-03 5_[+3(9.71e-05)]_67 chr4:187112597-187112677 9.37e-03 39_[+2(3.11e-05)]_33 chr11:82719098-82719178 1.08e-02 52_[+3(8.33e-05)]_20 chr2:44105148-44105228 7.35e-02 80 chr6:74098990-74099070 6.85e-01 80 chr5:176038534-176038614 3.27e-01 80 chr18:812950-813030 3.15e-03 43_[+1(1.61e-05)]_29 chr1:51895696-51895776 8.20e-06 27_[+1(6.39e-05)]_15_[+4(7.54e-05)]_\ 22 chr17:72864748-72864828 5.13e-03 30_[+3(4.84e-05)]_42 chr15:76050789-76050869 4.22e-01 80 chr2:178937433-178937513 2.75e-01 80 chr7:153120110-153120190 3.50e-02 80 chr17:72459800-72459880 1.04e-01 80 chr12:56584030-56584110 1.40e-01 40_[+1(3.41e-05)]_32 chr3:128251952-128252032 5.21e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************