******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETS2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:22873020-22873100 1.0000 80 chr2:91792136-91792216 1.0000 80 chr22:22054112-22054192 1.0000 80 chr22:21961682-21961762 1.0000 80 chr22:23233309-23233389 1.0000 80 chr1:173444479-173444559 1.0000 80 chr22:22833301-22833381 1.0000 80 chr22:23119426-23119506 1.0000 80 chr22:20735861-20735941 1.0000 80 chr19:11675426-11675506 1.0000 80 chr22:19324248-19324328 1.0000 80 chr13:81349886-81349966 1.0000 80 chr18:580301-580381 1.0000 80 chr22:21219338-21219418 1.0000 80 chr22:22853212-22853292 1.0000 80 chr13:91837891-91837971 1.0000 80 chr22:23366769-23366849 1.0000 80 chr22:22492958-22493038 1.0000 80 chr22:22875584-22875664 1.0000 80 chr22:22710728-22710808 1.0000 80 chr6:3338674-3338754 1.0000 80 chr2:91768701-91768781 1.0000 80 chr19:16998807-16998887 1.0000 80 chr1:142794339-142794419 1.0000 80 chr22:19665448-19665528 1.0000 80 chr22:20058624-20058704 1.0000 80 chr22:19264217-19264297 1.0000 80 chr17:42086051-42086131 1.0000 80 chr22:20834700-20834780 1.0000 80 chr22:22140106-22140186 1.0000 80 chr13:90728044-90728124 1.0000 80 chr22:21203031-21203111 1.0000 80 chr22:20009943-20010023 1.0000 80 chr22:22561167-22561247 1.0000 80 chr22:21921640-21921720 1.0000 80 chr19:47397874-47397954 1.0000 80 chr13:90776679-90776759 1.0000 80 chr15:38544423-38544503 1.0000 80 chr22:22855637-22855717 1.0000 80 chr8:12439770-12439850 1.0000 80 chrX:1623765-1623845 1.0000 80 chr13:81247548-81247628 1.0000 80 chr22:20835942-20836022 1.0000 80 chr3:15633639-15633719 1.0000 80 chr1:156095871-156095951 1.0000 80 chr12:57635397-57635477 1.0000 80 chr6:150594449-150594529 1.0000 80 chr1:32421238-32421318 1.0000 80 chr22:22447209-22447289 1.0000 80 chr22:22163977-22164057 1.0000 80 chr22:22249887-22249967 1.0000 80 chr22:22305271-22305351 1.0000 80 chr1:228677941-228678021 1.0000 80 chr18:3598087-3598167 1.0000 80 chr22:17256607-17256687 1.0000 80 chr3:4498620-4498700 1.0000 80 chr22:20193278-20193358 1.0000 80 chr22:21930884-21930964 1.0000 80 chr22:22883821-22883901 1.0000 80 chr21:11039196-11039276 1.0000 80 chr13:93117708-93117788 1.0000 80 chr6:37611824-37611904 1.0000 80 chr1:142814848-142814928 1.0000 80 chr4:8480579-8480659 1.0000 80 chr21:11176954-11177034 1.0000 80 chr6:25027511-25027591 1.0000 80 chr7:150672176-150672256 1.0000 80 chr17:78230142-78230222 1.0000 80 chr22:22203888-22203968 1.0000 80 chr1:142837593-142837673 1.0000 80 chr1:173300115-173300195 1.0000 80 chr22:21276322-21276402 1.0000 80 chr22:19316635-19316715 1.0000 80 chr6:31693190-31693270 1.0000 80 chr5:131793325-131793405 1.0000 80 chr22:22359849-22359929 1.0000 80 chr1:55041451-55041531 1.0000 80 chr9:133323771-133323851 1.0000 80 chr7:138035200-138035280 1.0000 80 chr1:142808483-142808563 1.0000 80 chr22:20289637-20289717 1.0000 80 chr17:41400130-41400210 1.0000 80 chr22:21455964-21456044 1.0000 80 chr22:22730425-22730505 1.0000 80 chr18:9966152-9966232 1.0000 80 chr22:22193892-22193972 1.0000 80 chr22:21447666-21447746 1.0000 80 chr22:21294186-21294266 1.0000 80 chr22:20883633-20883713 1.0000 80 chr6:43337847-43337927 1.0000 80 chr3:9685971-9686051 1.0000 80 chr21:11136559-11136639 1.0000 80 chr3:125919514-125919594 1.0000 80 chr17:30334869-30334949 1.0000 80 chr22:19686228-19686308 1.0000 80 chr22:19800502-19800582 1.0000 80 chr6:150638240-150638320 1.0000 80 chr22:22367264-22367344 1.0000 80 chr22:21213129-21213209 1.0000 80 chr22:19929020-19929100 1.0000 80 chr22:20828620-20828700 1.0000 80 chr19:21777410-21777490 1.0000 80 chr22:20287350-20287430 1.0000 80 chr1:202132586-202132666 1.0000 80 chr22:21372673-21372753 1.0000 80 chr1:16957389-16957469 1.0000 80 chr2:172101644-172101724 1.0000 80 chr22:20062544-20062624 1.0000 80 chr3:142838014-142838094 1.0000 80 chr22:23267321-23267401 1.0000 80 chr18:3622062-3622142 1.0000 80 chr21:11147228-11147308 1.0000 80 chr22:22130041-22130121 1.0000 80 chr18:3659713-3659793 1.0000 80 chr22:23250499-23250579 1.0000 80 chr5:74974195-74974275 1.0000 80 chr7:150778311-150778391 1.0000 80 chr19:13210096-13210176 1.0000 80 chr22:22145779-22145859 1.0000 80 chr20:347661-347741 1.0000 80 chr22:23340296-23340376 1.0000 80 chr20:353271-353351 1.0000 80 chr10:104214930-10421501 1.0000 80 chr9:131419788-131419868 1.0000 80 chr1:212519615-212519695 1.0000 80 chr7:123633109-123633189 1.0000 80 chr10:74079725-74079805 1.0000 80 chr22:21910093-21910173 1.0000 80 chr22:20255429-20255509 1.0000 80 chr1:142791505-142791585 1.0000 80 chr7:116594094-116594174 1.0000 80 chr22:21923495-21923575 1.0000 80 chr22:22158281-22158361 1.0000 80 chr1:224544836-224544916 1.0000 80 chr6:2765878-2765958 1.0000 80 chr1:142822534-142822614 1.0000 80 chr1:212659649-212659729 1.0000 80 chr3:45184981-45185061 1.0000 80 chr18:3012951-3013031 1.0000 80 chr13:90479879-90479959 1.0000 80 chr1:115053450-115053530 1.0000 80 chr22:20004171-20004251 1.0000 80 chr22:21274186-21274266 1.0000 80 chr4:57855707-57855787 1.0000 80 chr2:48346213-48346293 1.0000 80 chr22:17190879-17190959 1.0000 80 chr6:16044706-16044786 1.0000 80 chr1:52214557-52214637 1.0000 80 chr7:150019255-150019335 1.0000 80 chr8:54931982-54932062 1.0000 80 chr19:39903240-39903320 1.0000 80 chr22:21168047-21168127 1.0000 80 chr6:37396525-37396605 1.0000 80 chr7:106453754-106453834 1.0000 80 chr22:20761913-20761993 1.0000 80 chr15:34948370-34948450 1.0000 80 chr1:201548075-201548155 1.0000 80 chr17:26684286-26684366 1.0000 80 chr22:22307273-22307353 1.0000 80 chr3:14293101-14293181 1.0000 80 chr8:12422425-12422505 1.0000 80 chr1:231208420-231208500 1.0000 80 chr22:22994012-22994092 1.0000 80 chr16:11721476-11721556 1.0000 80 chr7:128170923-128171003 1.0000 80 chr6:33345573-33345653 1.0000 80 chr22:20746883-20746963 1.0000 80 chr5:177540460-177540540 1.0000 80 chr1:247273704-247273784 1.0000 80 chr10:88854413-88854493 1.0000 80 chr6:28655062-28655142 1.0000 80 chr8:131044779-131044859 1.0000 80 chr22:22139308-22139388 1.0000 80 chr1:142826062-142826142 1.0000 80 chr5:145559714-145559794 1.0000 80 chr5:81719348-81719428 1.0000 80 chr6:160389658-160389738 1.0000 80 chr22:22089946-22090026 1.0000 80 chr11:86648325-86648405 1.0000 80 chr1:52607865-52607945 1.0000 80 chr20:49125634-49125714 1.0000 80 chr11:71912717-71912797 1.0000 80 chr10:74021817-74021897 1.0000 80 chr1:15736417-15736497 1.0000 80 chr11:43974572-43974652 1.0000 80 chr4:100656063-100656143 1.0000 80 chr17:44215656-44215736 1.0000 80 chr6:28722227-28722307 1.0000 80 chr1:26810565-26810645 1.0000 80 chr14:31711890-31711970 1.0000 80 chr1:12140202-12140282 1.0000 80 chr12:116994352-11699443 1.0000 80 chr6:3339709-3339789 1.0000 80 chr5:1132001-1132081 1.0000 80 chr6:3055103-3055183 1.0000 80 chr16:81131908-81131988 1.0000 80 chr2:48127984-48128064 1.0000 80 chr22:19484495-19484575 1.0000 80 chr17:41400333-41400413 1.0000 80 chr1:228555804-228555884 1.0000 80 chr7:138776976-138777056 1.0000 80 chr10:29100690-29100770 1.0000 80 chr11:9341184-9341264 1.0000 80 chr10:3932898-3932978 1.0000 80 chr7:106301276-106301356 1.0000 80 chr2:238873271-238873351 1.0000 80 chr5:73887732-73887812 1.0000 80 chr4:128551491-128551571 1.0000 80 chr22:19278938-19279018 1.0000 80 chr7:148395651-148395731 1.0000 80 chr22:21213332-21213412 1.0000 80 chr6:149568710-149568790 1.0000 80 chr10:3710159-3710239 1.0000 80 chr22:19166070-19166150 1.0000 80 chr6:16077608-16077688 1.0000 80 chr17:62502832-62502912 1.0000 80 chr10:80733216-80733296 1.0000 80 chr20:56964571-56964651 1.0000 80 chr3:44482875-44482955 1.0000 80 chr22:20185430-20185510 1.0000 80 chr1:15562204-15562284 1.0000 80 chr1:47799744-47799824 1.0000 80 chr15:64386888-64386968 1.0000 80 chr16:10837702-10837782 1.0000 80 chr13:91056237-91056317 1.0000 80 chr7:116726662-116726742 1.0000 80 chr15:64085270-64085350 1.0000 80 chr3:195871916-195871996 1.0000 80 chr1:241860193-241860273 1.0000 80 chr6:31702667-31702747 1.0000 80 chr5:140018352-140018432 1.0000 80 chr17:46903273-46903353 1.0000 80 chr22:21166224-21166304 1.0000 80 chr13:90914102-90914182 1.0000 80 chr7:6626221-6626301 1.0000 80 chr2:97587554-97587634 1.0000 80 chr1:26453428-26453508 1.0000 80 chr17:37170472-37170552 1.0000 80 chr22:20841452-20841532 1.0000 80 chr3:45102813-45102893 1.0000 80 chr1:32475011-32475091 1.0000 80 chr7:143067411-143067491 1.0000 80 chr22:22862590-22862670 1.0000 80 chr7:75473189-75473269 1.0000 80 chr5:141736623-141736703 1.0000 80 chr7:138040089-138040169 1.0000 80 chr17:25902677-25902757 1.0000 80 chr22:23259325-23259405 1.0000 80 chr9:66458446-66458526 1.0000 80 chr3:13937764-13937844 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ETS2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETS2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.238 C 0.262 G 0.259 T 0.241 Background letter frequencies (from file dataset with add-one prior applied): A 0.238 C 0.262 G 0.259 T 0.241 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DSCTGGSM MEME-1 width = 8 sites = 84 llr = 592 E-value = 1.3e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4::::::4 pos.-specific C :5a2::35 probability G 45::aa7: matrix T 3::8:::1 bits 2.1 1.9 * ** 1.7 * ** 1.4 * ** Relative 1.2 **** Entropy 1.0 ****** (10.2 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCTGGGC consensus AG C CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:26453428-26453508 5 7.14e-05 acca gcctgggc aacatggtga chr6:31702667-31702747 13 7.14e-05 TGAGGATGAG GCCTGGGC AGCTAAGGCT chr10:80733216-80733296 38 7.14e-05 TCAAAGACAG GCCTGGGA ACTGGGGTCC chr6:16077608-16077688 53 7.14e-05 ccgtactcca gcctgggc tgggcgacaa chr1:115053450-115053530 18 7.14e-05 AGATGAAGCA GCCTGGGC CGAGCCCGAG chr22:19929020-19929100 10 7.14e-05 AGTTTCCCC ACCTGGGA AGGGGGCTAC chr22:20834700-20834780 57 7.14e-05 tactgctggt gcctggga cctccaggat chr22:22873020-22873100 29 7.14e-05 aatctcttga acctggga ggtggaggtt chr7:138040089-138040169 40 1.42e-04 actgcactct agctgggc aatagagtgg chr7:6626221-6626301 15 1.42e-04 tctcccgtgt agctggga ttacaggcat chr1:15562204-15562284 35 1.42e-04 cctccagagt agctggga ttacaggcac chr6:28722227-28722307 54 1.42e-04 tctcccgagt ggctggga ctacaggcgc chr1:52607865-52607945 31 1.42e-04 GCGCCGATGC GGCTGGGC GGGTGCCGGG chr19:39903240-39903320 44 1.42e-04 CCCGCCTCAC AGCTGGGA TCGGACTCTC chr22:21923495-21923575 43 1.42e-04 tataaaaatt agctgggc gtggttgcat chr19:21777410-21777490 42 1.42e-04 gtgacatata agctgggc acagccatga chr22:20883633-20883713 31 1.42e-04 cttcccaagt agctggga ttatggccgc chr22:21294186-21294266 20 1.42e-04 cctcctgagt agctggga ttacaggcac chr6:31693190-31693270 44 1.42e-04 gctcctgagt agctggga ctacaggcgc chr22:19316635-19316715 72 1.42e-04 cctcccgagt agctggga t chr1:173300115-173300195 38 1.42e-04 cctcctgagt agctggga ttacaggcgc chr17:78230142-78230222 17 1.42e-04 cctccagagt agctggga ttgcaggcat chr22:19665448-19665528 2 1.42e-04 t agctgggc atggtgacgg chr6:3338674-3338754 16 1.42e-04 catcctcctt agctggga ctacaggcgc chr22:22853212-22853292 25 1.42e-04 cctcccgagt agctggga ctacaggagc chr3:44482875-44482955 57 1.77e-04 atgcctaacc tcctggga atgcagccca chr2:238873271-238873351 5 1.77e-04 aacc tcctggga atgtagccca chr16:81131908-81131988 66 1.77e-04 atgcctaacc tcctggga atgcagc chr7:123633109-123633189 19 1.77e-04 atgcttaacc tcctggga gggcagctca chr6:150594449-150594529 47 1.77e-04 caacccaaac tcctgggc tcaagtgatc chr1:156095871-156095951 49 1.77e-04 GGGGCGATGT TCCTGGGA GACAGGAAAT chr22:22875584-22875664 26 1.77e-04 tacaaaaatt tcctgggc gtggccgtgc chr5:140018352-140018432 54 2.11e-04 cctcccaaag tgctggga ttacaggcat chr7:138776976-138777056 12 2.11e-04 ttcttggatg tgctggga gtcagcttgc chr10:74021817-74021897 23 2.11e-04 gccAGTATTA tgctggga ttacaggtgt chr22:22158281-22158361 33 2.11e-04 cctcccaaag tgctggga ttacaggcgc chr1:55041451-55041531 68 2.11e-04 aaaggcccag tgctggga gatgg chr1:228555804-228555884 22 2.83e-04 ACCCCGCCTC ACCTGGCC AGCTGACCAG chr5:81719348-81719428 5 2.83e-04 ccgc acctggcc GAGAACACTT chr16:11721476-11721556 29 2.83e-04 ttcgagacca gcctggcc gacatggcaa chr22:22994012-22994092 60 2.83e-04 CCCTGCCCCT ACCTGGCA ACCGCAGTGC chr6:37396525-37396605 1 2.83e-04 . gcctggcc tgtcagagtt chr20:353271-353351 3 2.83e-04 ca gcctggcc aacatggtaa chr22:22130041-22130121 24 2.83e-04 gagccactgt gcctggcc CTTGTCtttt chr22:23267321-23267401 24 2.83e-04 CCCTCAGCCC ACCTGGCC ACGCCCACCC chr2:172101644-172101724 2 2.83e-04 a acctggca tgaaattctt chr7:150672176-150672256 32 2.83e-04 CGATACAGGT GCCTggcc ggccgggccg chr22:22305271-22305351 18 2.83e-04 gagacaccac gcctggcc AACCTTTTTC chr22:22855637-22855717 47 2.83e-04 tttgagacca gcctggcc aacatagcaa chr1:15736417-15736497 64 3.55e-04 GCCACGGACG AGCTGGCC ACCAAGCTG chr22:20746883-20746963 43 3.55e-04 gcccgggtcc ggctggca gctccgagtg chr1:16957389-16957469 6 3.55e-04 CCTTC AGCTGGCA AAAGTGCAGG chr1:173444479-173444559 54 3.55e-04 ggcgtggagg ggctggcc cccttcagtg chr22:19484495-19484575 45 3.90e-04 TGATGGGGTC TCCTGGCC TTTGGGATTC chr22:22139308-22139388 27 3.90e-04 ggtctcaaat tcctggcc tcaagcgatc chr18:3598087-3598167 65 3.90e-04 atcaagacca tcctggcc aaccaaca chr1:12140202-12140282 46 4.24e-04 tcaggtgatc tgctggcc tcagcctccc chr1:47799744-47799824 50 5.02e-04 TCGAGGTGAG GCCCGGGC AGCAGGCGGG chr17:62502832-62502912 71 5.02e-04 CCCGGGACCC GCCCGGGC TG chr22:19278938-19279018 26 5.02e-04 CGGCCGCCGC GCCCGGGA CGCCGCAGCC chr22:22089946-22090026 49 5.02e-04 TCCCGGCGCG GCCCGGGA CGCGCTGAGG chr10:88854413-88854493 73 5.02e-04 AGCGGGCCCG GCCCGGGA chr7:128170923-128171003 43 5.02e-04 GAACGGGTGG ACCCGGGC GGCCAAGCCT chr22:20255429-20255509 71 5.02e-04 CGCCTCGGCA gcccggga cg chr22:20289637-20289717 29 5.02e-04 ttcaagacca gcccgggc aacagggtga chr22:22140106-22140186 38 5.02e-04 aacagtgtga acccggga ggcggagctt chr1:247273704-247273784 35 6.13e-04 acaaaaaatt agccgggc gcggtggcgg chr5:177540460-177540540 31 6.13e-04 CGGGGGCCGG GGCCGGGC TGTGGGCTTG chr20:347661-347741 47 6.13e-04 caaaataatt agccggga gaggtggcgc chr22:20062544-20062624 60 6.13e-04 acaaaaaatt agccgggc atggtggtgg chr1:32421238-32421318 21 6.13e-04 AGAATAAAGG Agccgggc atggtggctc chr3:45102813-45102893 6 6.47e-04 atagg ggctgggt aaaatgaggc chr5:1132001-1132081 73 6.47e-04 cttgaacagg ggctgggt chr17:41400130-41400210 1 6.47e-04 . ggctgggt aacaagagcg chr22:22163977-22164057 63 7.39e-04 aagctccccc tcctgggt tcaggccatt chr22:23250499-23250579 58 7.55e-04 TCACCAGAGC TGCTGGGT GGCCAGGCCA chr10:29100690-29100770 19 8.34e-04 gagccactat gcccggcc AACAGTAGAC chr9:66458446-66458526 15 9.46e-04 CGGCGGCCAG GCCTGGCT CAGGACCAAT chr17:46903273-46903353 17 9.46e-04 gctttatttt agccggcc cctattcaag chr5:145559714-145559794 15 9.81e-04 aggagatcaa ggctggct gcagtgagct chr1:224544836-224544916 31 9.81e-04 GGGTAGGAGA GGCTGGCT GCCCTACCCG chr18:3012951-3013031 19 1.02e-03 CCCCGGAGGG TCCCGGCC TCCGGCAGGA chr10:74079725-74079805 15 1.02e-03 TCATTATCCA TCCCGGCC ACTGGCGTTC chrX:1623765-1623845 64 1.07e-03 atcgagacca tcctggct aacacggtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:26453428-26453508 7.1e-05 4_[+1]_68 chr6:31702667-31702747 7.1e-05 12_[+1]_60 chr10:80733216-80733296 7.1e-05 37_[+1]_35 chr6:16077608-16077688 7.1e-05 52_[+1]_20 chr1:115053450-115053530 7.1e-05 17_[+1]_55 chr22:19929020-19929100 7.1e-05 9_[+1]_63 chr22:20834700-20834780 7.1e-05 56_[+1]_16 chr22:22873020-22873100 7.1e-05 28_[+1]_44 chr7:138040089-138040169 0.00014 39_[+1]_33 chr7:6626221-6626301 0.00014 14_[+1]_58 chr1:15562204-15562284 0.00014 34_[+1]_38 chr6:28722227-28722307 0.00014 53_[+1]_19 chr1:52607865-52607945 0.00014 30_[+1]_42 chr19:39903240-39903320 0.00014 43_[+1]_29 chr22:21923495-21923575 0.00014 42_[+1]_30 chr19:21777410-21777490 0.00014 41_[+1]_31 chr22:20883633-20883713 0.00014 30_[+1]_42 chr22:21294186-21294266 0.00014 19_[+1]_53 chr6:31693190-31693270 0.00014 43_[+1]_29 chr22:19316635-19316715 0.00014 71_[+1]_1 chr1:173300115-173300195 0.00014 37_[+1]_35 chr17:78230142-78230222 0.00014 16_[+1]_56 chr22:19665448-19665528 0.00014 1_[+1]_71 chr6:3338674-3338754 0.00014 15_[+1]_57 chr22:22853212-22853292 0.00014 24_[+1]_48 chr3:44482875-44482955 0.00018 56_[+1]_16 chr2:238873271-238873351 0.00018 4_[+1]_68 chr16:81131908-81131988 0.00018 65_[+1]_7 chr7:123633109-123633189 0.00018 18_[+1]_54 chr6:150594449-150594529 0.00018 46_[+1]_26 chr1:156095871-156095951 0.00018 48_[+1]_24 chr22:22875584-22875664 0.00018 25_[+1]_47 chr5:140018352-140018432 0.00021 53_[+1]_19 chr7:138776976-138777056 0.00021 11_[+1]_61 chr10:74021817-74021897 0.00021 22_[+1]_50 chr22:22158281-22158361 0.00021 32_[+1]_40 chr1:55041451-55041531 0.00021 67_[+1]_5 chr1:228555804-228555884 0.00028 21_[+1]_51 chr5:81719348-81719428 0.00028 4_[+1]_68 chr16:11721476-11721556 0.00028 28_[+1]_44 chr22:22994012-22994092 0.00028 59_[+1]_13 chr6:37396525-37396605 0.00028 [+1]_72 chr20:353271-353351 0.00028 2_[+1]_70 chr22:22130041-22130121 0.00028 23_[+1]_49 chr22:23267321-23267401 0.00028 23_[+1]_49 chr2:172101644-172101724 0.00028 1_[+1]_71 chr7:150672176-150672256 0.00028 31_[+1]_41 chr22:22305271-22305351 0.00028 17_[+1]_55 chr22:22855637-22855717 0.00028 46_[+1]_26 chr1:15736417-15736497 0.00035 63_[+1]_9 chr22:20746883-20746963 0.00035 42_[+1]_30 chr1:16957389-16957469 0.00035 5_[+1]_67 chr1:173444479-173444559 0.00035 53_[+1]_19 chr22:19484495-19484575 0.00039 44_[+1]_28 chr22:22139308-22139388 0.00039 26_[+1]_46 chr18:3598087-3598167 0.00039 64_[+1]_8 chr1:12140202-12140282 0.00042 45_[+1]_27 chr1:47799744-47799824 0.0005 49_[+1]_23 chr17:62502832-62502912 0.0005 70_[+1]_2 chr22:19278938-19279018 0.0005 25_[+1]_47 chr22:22089946-22090026 0.0005 48_[+1]_24 chr10:88854413-88854493 0.0005 72_[+1] chr7:128170923-128171003 0.0005 42_[+1]_30 chr22:20255429-20255509 0.0005 70_[+1]_2 chr22:20289637-20289717 0.0005 28_[+1]_44 chr22:22140106-22140186 0.0005 37_[+1]_35 chr1:247273704-247273784 0.00061 34_[+1]_38 chr5:177540460-177540540 0.00061 30_[+1]_42 chr20:347661-347741 0.00061 46_[+1]_26 chr22:20062544-20062624 0.00061 59_[+1]_13 chr1:32421238-32421318 0.00061 20_[+1]_52 chr3:45102813-45102893 0.00065 5_[+1]_67 chr5:1132001-1132081 0.00065 72_[+1] chr17:41400130-41400210 0.00065 [+1]_72 chr22:22163977-22164057 0.00074 62_[+1]_10 chr22:23250499-23250579 0.00076 57_[+1]_15 chr10:29100690-29100770 0.00083 18_[+1]_54 chr9:66458446-66458526 0.00095 14_[+1]_58 chr17:46903273-46903353 0.00095 16_[+1]_56 chr5:145559714-145559794 0.00098 14_[+1]_58 chr1:224544836-224544916 0.00098 30_[+1]_42 chr18:3012951-3013031 0.001 18_[+1]_54 chr10:74079725-74079805 0.001 14_[+1]_58 chrX:1623765-1623845 0.0011 63_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DSCTGGSM width=8 seqs=84 chr1:26453428-26453508 ( 5) GCCTGGGC 1 chr6:31702667-31702747 ( 13) GCCTGGGC 1 chr10:80733216-80733296 ( 38) GCCTGGGA 1 chr6:16077608-16077688 ( 53) GCCTGGGC 1 chr1:115053450-115053530 ( 18) GCCTGGGC 1 chr22:19929020-19929100 ( 10) ACCTGGGA 1 chr22:20834700-20834780 ( 57) GCCTGGGA 1 chr22:22873020-22873100 ( 29) ACCTGGGA 1 chr7:138040089-138040169 ( 40) AGCTGGGC 1 chr7:6626221-6626301 ( 15) AGCTGGGA 1 chr1:15562204-15562284 ( 35) AGCTGGGA 1 chr6:28722227-28722307 ( 54) GGCTGGGA 1 chr1:52607865-52607945 ( 31) GGCTGGGC 1 chr19:39903240-39903320 ( 44) AGCTGGGA 1 chr22:21923495-21923575 ( 43) AGCTGGGC 1 chr19:21777410-21777490 ( 42) AGCTGGGC 1 chr22:20883633-20883713 ( 31) AGCTGGGA 1 chr22:21294186-21294266 ( 20) AGCTGGGA 1 chr6:31693190-31693270 ( 44) AGCTGGGA 1 chr22:19316635-19316715 ( 72) AGCTGGGA 1 chr1:173300115-173300195 ( 38) AGCTGGGA 1 chr17:78230142-78230222 ( 17) AGCTGGGA 1 chr22:19665448-19665528 ( 2) AGCTGGGC 1 chr6:3338674-3338754 ( 16) AGCTGGGA 1 chr22:22853212-22853292 ( 25) AGCTGGGA 1 chr3:44482875-44482955 ( 57) TCCTGGGA 1 chr2:238873271-238873351 ( 5) TCCTGGGA 1 chr16:81131908-81131988 ( 66) TCCTGGGA 1 chr7:123633109-123633189 ( 19) TCCTGGGA 1 chr6:150594449-150594529 ( 47) TCCTGGGC 1 chr1:156095871-156095951 ( 49) TCCTGGGA 1 chr22:22875584-22875664 ( 26) TCCTGGGC 1 chr5:140018352-140018432 ( 54) TGCTGGGA 1 chr7:138776976-138777056 ( 12) TGCTGGGA 1 chr10:74021817-74021897 ( 23) TGCTGGGA 1 chr22:22158281-22158361 ( 33) TGCTGGGA 1 chr1:55041451-55041531 ( 68) TGCTGGGA 1 chr1:228555804-228555884 ( 22) ACCTGGCC 1 chr5:81719348-81719428 ( 5) ACCTGGCC 1 chr16:11721476-11721556 ( 29) GCCTGGCC 1 chr22:22994012-22994092 ( 60) ACCTGGCA 1 chr6:37396525-37396605 ( 1) GCCTGGCC 1 chr20:353271-353351 ( 3) GCCTGGCC 1 chr22:22130041-22130121 ( 24) GCCTGGCC 1 chr22:23267321-23267401 ( 24) ACCTGGCC 1 chr2:172101644-172101724 ( 2) ACCTGGCA 1 chr7:150672176-150672256 ( 32) GCCTGGCC 1 chr22:22305271-22305351 ( 18) GCCTGGCC 1 chr22:22855637-22855717 ( 47) GCCTGGCC 1 chr1:15736417-15736497 ( 64) AGCTGGCC 1 chr22:20746883-20746963 ( 43) GGCTGGCA 1 chr1:16957389-16957469 ( 6) AGCTGGCA 1 chr1:173444479-173444559 ( 54) GGCTGGCC 1 chr22:19484495-19484575 ( 45) TCCTGGCC 1 chr22:22139308-22139388 ( 27) TCCTGGCC 1 chr18:3598087-3598167 ( 65) TCCTGGCC 1 chr1:12140202-12140282 ( 46) TGCTGGCC 1 chr1:47799744-47799824 ( 50) GCCCGGGC 1 chr17:62502832-62502912 ( 71) GCCCGGGC 1 chr22:19278938-19279018 ( 26) GCCCGGGA 1 chr22:22089946-22090026 ( 49) GCCCGGGA 1 chr10:88854413-88854493 ( 73) GCCCGGGA 1 chr7:128170923-128171003 ( 43) ACCCGGGC 1 chr22:20255429-20255509 ( 71) GCCCGGGA 1 chr22:20289637-20289717 ( 29) GCCCGGGC 1 chr22:22140106-22140186 ( 38) ACCCGGGA 1 chr1:247273704-247273784 ( 35) AGCCGGGC 1 chr5:177540460-177540540 ( 31) GGCCGGGC 1 chr20:347661-347741 ( 47) AGCCGGGA 1 chr22:20062544-20062624 ( 60) AGCCGGGC 1 chr1:32421238-32421318 ( 21) AGCCGGGC 1 chr3:45102813-45102893 ( 6) GGCTGGGT 1 chr5:1132001-1132081 ( 73) GGCTGGGT 1 chr17:41400130-41400210 ( 1) GGCTGGGT 1 chr22:22163977-22164057 ( 63) TCCTGGGT 1 chr22:23250499-23250579 ( 58) TGCTGGGT 1 chr10:29100690-29100770 ( 19) GCCCGGCC 1 chr9:66458446-66458526 ( 15) GCCTGGCT 1 chr17:46903273-46903353 ( 17) AGCCGGCC 1 chr5:145559714-145559794 ( 15) GGCTGGCT 1 chr1:224544836-224544916 ( 31) GGCTGGCT 1 chr18:3012951-3013031 ( 19) TCCCGGCC 1 chr10:74079725-74079805 ( 15) TCCCGGCC 1 chrX:1623765-1623845 ( 64) TCCTGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.74626 E= 1.3e-011 63 -1304 56 5 -1304 103 84 -1304 -1304 193 -1304 -1304 -1304 -29 -1304 170 -1304 -1304 195 -1304 -1304 -1304 195 -1304 -1304 35 137 -1304 85 83 -1304 -117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.3e-011 0.369048 0.000000 0.380952 0.250000 0.000000 0.535714 0.464286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.428571 0.464286 0.000000 0.107143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCTGGSM MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CG]C[TC]GG[GC][CA] -------------------------------------------------------------------------------- Time 5.19 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGGCTGR MEME-2 width = 8 sites = 48 llr = 393 E-value = 5.4e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:::1:5 pos.-specific C 5::1a1:: probability G 5:a9:1a5 matrix T :::::7:: bits 2.1 * 1.9 ** * * 1.7 ** * * 1.4 **** * Relative 1.2 **** * Entropy 1.0 ***** ** (11.8 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGGCTGA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:45102813-45102893 19 1.61e-05 tgggtaaaat gaggctga gacctacaaa chr6:3339709-3339789 6 1.61e-05 aaaat gaggctga aacctactgg chr8:54931982-54932062 43 1.61e-05 agcttctagg gaggctga ggcaagagaa chr4:57855707-57855787 22 1.61e-05 GCCAAAATGG GAGGCTGA TGATTAGTTG chr22:21910093-21910173 23 1.61e-05 agctactcgg gaggctga ggcaggagaa chr22:21455964-21456044 51 1.61e-05 agctacttgg gaggctga ggcaccagaa chr22:17256607-17256687 37 1.61e-05 agcactttgg gaggctga gggggatgga chr18:3598087-3598167 22 1.61e-05 agcactttgg gaggctga ggtgggtgga chr22:22140106-22140186 12 1.61e-05 agctacttgg gaggctga ggcaggagaa chr22:19665448-19665528 44 1.61e-05 agctacttgg gaggctga ggcaggagaa chr22:22875584-22875664 68 1.61e-05 aggtactcgg gaggctga ggcag chr22:21219338-21219418 65 1.61e-05 agcacttggg gaggctga ggcaggtg chr22:21961682-21961762 17 1.61e-05 agctacttag gaggctga ggtgggagaa chr22:22873020-22873100 3 1.61e-05 gg gaggctga ggcaggagaa chr17:42086051-42086131 5 4.99e-05 GCCA CAGGCTGA AGGGGGCTTG chr3:195871916-195871996 29 6.76e-05 ttctattgcc caggctgg agcacagtgg chr1:12140202-12140282 12 6.76e-05 ctacgttggc caggctgg tcttgaactc chr20:49125634-49125714 53 6.76e-05 tcttgttgcc caggctgg agtgcagtgg chr22:22307273-22307353 24 6.76e-05 GTCGGGCCTC CAGGCTGG CGGGGCCGGA chr1:212519615-212519695 35 6.76e-05 Gtatgttgcc caggctgg tcttgaactc chr22:22163977-22164057 16 6.76e-05 ctctgtcgcc caggctgg agtgcagtgg chr6:150594449-150594529 1 6.76e-05 . caggctgg agtgcagtgg chr19:47397874-47397954 37 6.76e-05 ccatgttgac caggctgg tctagaactc chr22:21921640-21921720 22 6.76e-05 ccacgttggc caggctgg tctcgaactc chr22:19264217-19264297 18 6.76e-05 ctctgttgcc caggctgg agtgcagtgg chr15:64386888-64386968 41 8.35e-05 ttgaactcag gaggcaga ggttgcagtg chr7:106453754-106453834 54 8.35e-05 ttgaactcag gaggcaga gtttgcagtg chr22:20735861-20735941 42 8.35e-05 ttgaacccag gaggcaga ggttgcagtg chr22:21166224-21166304 4 1.50e-04 tgg gaggcgga gcttgcagtg chr7:128170923-128171003 20 1.50e-04 gggggccgcc gAGGCGGA TCCGGGAACG chr7:138035200-138035280 15 1.50e-04 tcggaaggca gaggcagg aaaatggctt chr1:55041451-55041531 35 1.50e-04 acaagtgttc caggcaga gggagtggca chr13:91056237-91056317 31 2.38e-04 aggccaggaa cagcctga agcaatgggc chr22:22139308-22139388 11 2.38e-04 ctatgttgtc caggcagg tctcaaattc chr2:48346213-48346293 68 2.38e-04 tcttgaatag gaggcggg taaaa chr22:22730425-22730505 39 2.38e-04 GTCAGCCACC CAGCCTGA TTCTGACTCT chr1:156095871-156095951 7 2.38e-04 TGCCAC CAGGCGGA CTCCCTGTAC chrX:1623765-1623845 27 2.38e-04 ttgggaagcc gaggcggg tggatcacaa chr22:19324248-19324328 21 2.38e-04 catgggccca gagcctgg tagccccact chr1:47799744-47799824 60 2.75e-04 GCCCGGGCAG CAGGCGGG CTCCTTGGGG chr16:81131908-81131988 2 2.75e-04 c cagcctgg gtgacagagc chr5:145559714-145559794 53 2.75e-04 tactgcactg cagcctgg ttgatagagt chr22:20255429-20255509 8 2.75e-04 GCGGCCC CAGCCTGG CGCGGCACTG chr22:22193892-22193972 51 2.75e-04 cactgcactg cagcctgg atgacagagt chr1:32421238-32421318 63 2.93e-04 agcactttgg gaggccga ggtgggcaga chr22:19929020-19929100 72 3.30e-04 ACTAGACCAA GAGGCCGG T chr5:177540460-177540540 65 3.49e-04 GCCGGTGAGT CAGGCCGG GTTTTCCC chr1:16957389-16957469 64 3.49e-04 GTCTTCTGAG CAGGCCGG GGAGGGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:45102813-45102893 1.6e-05 18_[+2]_54 chr6:3339709-3339789 1.6e-05 5_[+2]_67 chr8:54931982-54932062 1.6e-05 42_[+2]_30 chr4:57855707-57855787 1.6e-05 21_[+2]_51 chr22:21910093-21910173 1.6e-05 22_[+2]_50 chr22:21455964-21456044 1.6e-05 50_[+2]_22 chr22:17256607-17256687 1.6e-05 36_[+2]_36 chr18:3598087-3598167 1.6e-05 21_[+2]_51 chr22:22140106-22140186 1.6e-05 11_[+2]_61 chr22:19665448-19665528 1.6e-05 43_[+2]_29 chr22:22875584-22875664 1.6e-05 67_[+2]_5 chr22:21219338-21219418 1.6e-05 64_[+2]_8 chr22:21961682-21961762 1.6e-05 16_[+2]_56 chr22:22873020-22873100 1.6e-05 2_[+2]_70 chr17:42086051-42086131 5e-05 4_[+2]_68 chr3:195871916-195871996 6.8e-05 28_[+2]_44 chr1:12140202-12140282 6.8e-05 11_[+2]_61 chr20:49125634-49125714 6.8e-05 52_[+2]_20 chr22:22307273-22307353 6.8e-05 23_[+2]_49 chr1:212519615-212519695 6.8e-05 34_[+2]_38 chr22:22163977-22164057 6.8e-05 15_[+2]_57 chr6:150594449-150594529 6.8e-05 [+2]_72 chr19:47397874-47397954 6.8e-05 36_[+2]_36 chr22:21921640-21921720 6.8e-05 21_[+2]_51 chr22:19264217-19264297 6.8e-05 17_[+2]_55 chr15:64386888-64386968 8.4e-05 40_[+2]_32 chr7:106453754-106453834 8.4e-05 53_[+2]_19 chr22:20735861-20735941 8.4e-05 41_[+2]_31 chr22:21166224-21166304 0.00015 3_[+2]_69 chr7:128170923-128171003 0.00015 19_[+2]_53 chr7:138035200-138035280 0.00015 14_[+2]_58 chr1:55041451-55041531 0.00015 34_[+2]_38 chr13:91056237-91056317 0.00024 30_[+2]_42 chr22:22139308-22139388 0.00024 10_[+2]_62 chr2:48346213-48346293 0.00024 67_[+2]_5 chr22:22730425-22730505 0.00024 38_[+2]_34 chr1:156095871-156095951 0.00024 6_[+2]_66 chrX:1623765-1623845 0.00024 26_[+2]_46 chr22:19324248-19324328 0.00024 20_[+2]_52 chr1:47799744-47799824 0.00028 59_[+2]_13 chr16:81131908-81131988 0.00028 1_[+2]_71 chr5:145559714-145559794 0.00028 52_[+2]_20 chr22:20255429-20255509 0.00028 7_[+2]_65 chr22:22193892-22193972 0.00028 50_[+2]_22 chr1:32421238-32421318 0.00029 62_[+2]_10 chr22:19929020-19929100 0.00033 71_[+2]_1 chr5:177540460-177540540 0.00035 64_[+2]_8 chr1:16957389-16957469 0.00035 63_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGGCTGR width=8 seqs=48 chr3:45102813-45102893 ( 19) GAGGCTGA 1 chr6:3339709-3339789 ( 6) GAGGCTGA 1 chr8:54931982-54932062 ( 43) GAGGCTGA 1 chr4:57855707-57855787 ( 22) GAGGCTGA 1 chr22:21910093-21910173 ( 23) GAGGCTGA 1 chr22:21455964-21456044 ( 51) GAGGCTGA 1 chr22:17256607-17256687 ( 37) GAGGCTGA 1 chr18:3598087-3598167 ( 22) GAGGCTGA 1 chr22:22140106-22140186 ( 12) GAGGCTGA 1 chr22:19665448-19665528 ( 44) GAGGCTGA 1 chr22:22875584-22875664 ( 68) GAGGCTGA 1 chr22:21219338-21219418 ( 65) GAGGCTGA 1 chr22:21961682-21961762 ( 17) GAGGCTGA 1 chr22:22873020-22873100 ( 3) GAGGCTGA 1 chr17:42086051-42086131 ( 5) CAGGCTGA 1 chr3:195871916-195871996 ( 29) CAGGCTGG 1 chr1:12140202-12140282 ( 12) CAGGCTGG 1 chr20:49125634-49125714 ( 53) CAGGCTGG 1 chr22:22307273-22307353 ( 24) CAGGCTGG 1 chr1:212519615-212519695 ( 35) CAGGCTGG 1 chr22:22163977-22164057 ( 16) CAGGCTGG 1 chr6:150594449-150594529 ( 1) CAGGCTGG 1 chr19:47397874-47397954 ( 37) CAGGCTGG 1 chr22:21921640-21921720 ( 22) CAGGCTGG 1 chr22:19264217-19264297 ( 18) CAGGCTGG 1 chr15:64386888-64386968 ( 41) GAGGCAGA 1 chr7:106453754-106453834 ( 54) GAGGCAGA 1 chr22:20735861-20735941 ( 42) GAGGCAGA 1 chr22:21166224-21166304 ( 4) GAGGCGGA 1 chr7:128170923-128171003 ( 20) GAGGCGGA 1 chr7:138035200-138035280 ( 15) GAGGCAGG 1 chr1:55041451-55041531 ( 35) CAGGCAGA 1 chr13:91056237-91056317 ( 31) CAGCCTGA 1 chr22:22139308-22139388 ( 11) CAGGCAGG 1 chr2:48346213-48346293 ( 68) GAGGCGGG 1 chr22:22730425-22730505 ( 39) CAGCCTGA 1 chr1:156095871-156095951 ( 7) CAGGCGGA 1 chrX:1623765-1623845 ( 27) GAGGCGGG 1 chr22:19324248-19324328 ( 21) GAGCCTGG 1 chr1:47799744-47799824 ( 60) CAGGCGGG 1 chr16:81131908-81131988 ( 2) CAGCCTGG 1 chr5:145559714-145559794 ( 53) CAGCCTGG 1 chr22:20255429-20255509 ( 8) CAGCCTGG 1 chr22:22193892-22193972 ( 51) CAGCCTGG 1 chr1:32421238-32421318 ( 63) GAGGCCGA 1 chr22:19929020-19929100 ( 72) GAGGCCGG 1 chr5:177540460-177540540 ( 65) CAGGCCGG 1 chr1:16957389-16957469 ( 64) CAGGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 5.4e-012 -1223 87 101 -1223 207 -1223 -1223 -1223 -1223 -1223 195 -1223 -1223 -84 172 -1223 -1223 193 -1223 -1223 -93 -165 -105 147 -1223 -1223 195 -1223 113 -1223 89 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 5.4e-012 0.000000 0.479167 0.520833 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.145833 0.854167 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.083333 0.125000 0.666667 0.000000 0.000000 1.000000 0.000000 0.520833 0.000000 0.479167 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGGCTGR MEME-2 regular expression -------------------------------------------------------------------------------- [GC]AGGCTG[AG] -------------------------------------------------------------------------------- Time 8.88 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAGCYH MEME-3 width = 8 sites = 48 llr = 377 E-value = 2.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a::13 pos.-specific C 97a::a44 probability G ::::9::: matrix T 13::1:53 bits 2.1 * 1.9 ** * 1.7 * **** 1.4 * **** Relative 1.2 * **** Entropy 1.0 ****** (11.3 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCTC consensus T CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:42086051-42086131 55 1.83e-05 AGAAAGCAGC CCCAGCTC TGCCCAGAGG chr1:247273704-247273784 64 3.50e-05 tgcctgtagt cccagcta ctcgggagg chr1:201548075-201548155 68 3.50e-05 cacctgtaat cccagcta ctcgg chr22:21910093-21910173 10 3.50e-05 gcctgtaat cccagcta ctcgggaggc chr18:3659713-3659793 11 3.50e-05 cctgaccaca cccagcta agtttcgtat chr22:20883633-20883713 60 3.50e-05 caccaccatg cccagcta atttttatat chr22:21455964-21456044 38 3.50e-05 cgcctgtaat cccagcta cttgggaggc chr6:31693190-31693270 73 3.50e-05 cgccaccacg cccagcta chr22:19665448-19665528 31 3.50e-05 cacctgtagt cccagcta cttgggaggc chr6:3338674-3338754 45 3.50e-05 tgccgccatg cccagcta atttttgtgt chr22:22853212-22853292 54 3.50e-05 cgccatcacg cccagcta atttttttgt chr22:21961682-21961762 4 3.50e-05 aat cccagcta cttaggaggc chr8:54931982-54932062 30 5.19e-05 cacctgtagt cccagctt ctagggaggc chr1:241860193-241860273 19 7.18e-05 ccttatttta cccagccc ctattcaaga chr10:80733216-80733296 68 7.18e-05 AGCACCCTAG CCCAGCCC AGTCC chr22:19278938-19279018 43 7.18e-05 ACGCCGCAGC CCCAGCCC AGGTGGGAGG chr4:128551491-128551571 21 7.18e-05 ccttatttta cccagccc ctattcaaga chr14:31711890-31711970 11 7.18e-05 cctcatttta cccagccc ctatttaaga chr10:88854413-88854493 17 7.18e-05 TGTCCCCGGG CCCAGCCC AGCAACGCGG chr7:123633109-123633189 58 7.18e-05 cctcatttta cccagccc tattcaagat chr6:25027511-25027591 41 7.18e-05 TGCACAGCCA CCCAGCCC TCTGCGGGTT chr22:22158281-22158361 62 8.99e-05 aaccactgca cccagcca ttttgagtta chr22:22359849-22359929 51 1.08e-04 aatcactgcg cccagccT CAGCCATTCC chr10:3710159-3710239 16 1.25e-04 gtggcatcat ctcagctc actggaacct chr22:21923495-21923575 72 1.40e-04 tgcctgtaat ctcagcta c chr3:125919514-125919594 3 1.40e-04 aa ctcagcta tttgttgcct chr17:46903273-46903353 3 1.56e-04 gt ctcagctt tattttagcc chr5:73887732-73887812 3 1.56e-04 gt ctcagctt cattttaccc chr22:23267321-23267401 16 1.74e-04 CCTGGCTGCC CTCAGCCC ACCTGGCCAC chr1:142814848-142814928 51 1.74e-04 attctcctgc ctcagccc ctcgagtagc chr6:31702667-31702747 55 1.92e-04 GCCAGGGTCT CCCAGCAC AAGTCCTCTG chr22:17256607-17256687 24 1.92e-04 tgcgtgtaat cccagcac tttgggaggc chr18:3598087-3598167 9 1.92e-04 cctataat cccagcac tttgggaggc chr1:32421238-32421318 50 1.92e-04 tgcctgtaat cccagcac tttgggaggc chrX:1623765-1623845 8 1.92e-04 ctgtcat cccagcac tttgggaagc chr1:26810565-26810645 12 2.42e-04 tccagcaggt ctcagcct cattttccct chr22:21294186-21294266 5 2.42e-04 ctgc ctcagcct cctgagtagc chr22:19316635-19316715 57 2.42e-04 attctcctgc ctcagcct cccgagtagc chr17:78230142-78230222 2 2.42e-04 c ctcagcct ccagagtagc chr6:150594449-150594529 72 2.42e-04 atcctcctgc ctcagcct c chr22:20835942-20836022 63 2.42e-04 atcctctcac ctcagcct cccaagtagt chr22:19324248-19324328 6 2.59e-04 cgttc cccagcat gggcccagag chr16:11721476-11721556 50 3.40e-04 atggcaaaac cccatctc tactaaaaat chr1:52214557-52214637 27 3.40e-04 atggataaac cccatctc tactaaaaat chr20:353271-353351 24 3.40e-04 atggtaaaac cccatctc tactaaaaat chr7:106453754-106453834 9 3.55e-04 cctgtaat tccagcta ttcaggaagc chr1:32475011-32475091 61 3.86e-04 tgccagggtc tccagctt gcagaaggcc chr13:91837891-91837971 35 3.86e-04 AGCATTACAG TCCAGCTT TAGGCACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:42086051-42086131 1.8e-05 54_[+3]_18 chr1:247273704-247273784 3.5e-05 63_[+3]_9 chr1:201548075-201548155 3.5e-05 67_[+3]_5 chr22:21910093-21910173 3.5e-05 9_[+3]_63 chr18:3659713-3659793 3.5e-05 10_[+3]_62 chr22:20883633-20883713 3.5e-05 59_[+3]_13 chr22:21455964-21456044 3.5e-05 37_[+3]_35 chr6:31693190-31693270 3.5e-05 72_[+3] chr22:19665448-19665528 3.5e-05 30_[+3]_42 chr6:3338674-3338754 3.5e-05 44_[+3]_28 chr22:22853212-22853292 3.5e-05 53_[+3]_19 chr22:21961682-21961762 3.5e-05 3_[+3]_69 chr8:54931982-54932062 5.2e-05 29_[+3]_43 chr1:241860193-241860273 7.2e-05 18_[+3]_54 chr10:80733216-80733296 7.2e-05 67_[+3]_5 chr22:19278938-19279018 7.2e-05 42_[+3]_30 chr4:128551491-128551571 7.2e-05 20_[+3]_52 chr14:31711890-31711970 7.2e-05 10_[+3]_62 chr10:88854413-88854493 7.2e-05 16_[+3]_56 chr7:123633109-123633189 7.2e-05 57_[+3]_15 chr6:25027511-25027591 7.2e-05 40_[+3]_32 chr22:22158281-22158361 9e-05 61_[+3]_11 chr22:22359849-22359929 0.00011 50_[+3]_22 chr10:3710159-3710239 0.00013 15_[+3]_57 chr22:21923495-21923575 0.00014 71_[+3]_1 chr3:125919514-125919594 0.00014 2_[+3]_70 chr17:46903273-46903353 0.00016 2_[+3]_70 chr5:73887732-73887812 0.00016 2_[+3]_70 chr22:23267321-23267401 0.00017 15_[+3]_57 chr1:142814848-142814928 0.00017 50_[+3]_22 chr6:31702667-31702747 0.00019 54_[+3]_18 chr22:17256607-17256687 0.00019 23_[+3]_49 chr18:3598087-3598167 0.00019 8_[+3]_64 chr1:32421238-32421318 0.00019 49_[+3]_23 chrX:1623765-1623845 0.00019 7_[+3]_65 chr1:26810565-26810645 0.00024 11_[+3]_61 chr22:21294186-21294266 0.00024 4_[+3]_68 chr22:19316635-19316715 0.00024 56_[+3]_16 chr17:78230142-78230222 0.00024 1_[+3]_71 chr6:150594449-150594529 0.00024 71_[+3]_1 chr22:20835942-20836022 0.00024 62_[+3]_10 chr22:19324248-19324328 0.00026 5_[+3]_67 chr16:11721476-11721556 0.00034 49_[+3]_23 chr1:52214557-52214637 0.00034 26_[+3]_46 chr20:353271-353351 0.00034 23_[+3]_49 chr7:106453754-106453834 0.00036 8_[+3]_64 chr1:32475011-32475091 0.00039 60_[+3]_12 chr13:91837891-91837971 0.00039 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAGCYH width=8 seqs=48 chr17:42086051-42086131 ( 55) CCCAGCTC 1 chr1:247273704-247273784 ( 64) CCCAGCTA 1 chr1:201548075-201548155 ( 68) CCCAGCTA 1 chr22:21910093-21910173 ( 10) CCCAGCTA 1 chr18:3659713-3659793 ( 11) CCCAGCTA 1 chr22:20883633-20883713 ( 60) CCCAGCTA 1 chr22:21455964-21456044 ( 38) CCCAGCTA 1 chr6:31693190-31693270 ( 73) CCCAGCTA 1 chr22:19665448-19665528 ( 31) CCCAGCTA 1 chr6:3338674-3338754 ( 45) CCCAGCTA 1 chr22:22853212-22853292 ( 54) CCCAGCTA 1 chr22:21961682-21961762 ( 4) CCCAGCTA 1 chr8:54931982-54932062 ( 30) CCCAGCTT 1 chr1:241860193-241860273 ( 19) CCCAGCCC 1 chr10:80733216-80733296 ( 68) CCCAGCCC 1 chr22:19278938-19279018 ( 43) CCCAGCCC 1 chr4:128551491-128551571 ( 21) CCCAGCCC 1 chr14:31711890-31711970 ( 11) CCCAGCCC 1 chr10:88854413-88854493 ( 17) CCCAGCCC 1 chr7:123633109-123633189 ( 58) CCCAGCCC 1 chr6:25027511-25027591 ( 41) CCCAGCCC 1 chr22:22158281-22158361 ( 62) CCCAGCCA 1 chr22:22359849-22359929 ( 51) CCCAGCCT 1 chr10:3710159-3710239 ( 16) CTCAGCTC 1 chr22:21923495-21923575 ( 72) CTCAGCTA 1 chr3:125919514-125919594 ( 3) CTCAGCTA 1 chr17:46903273-46903353 ( 3) CTCAGCTT 1 chr5:73887732-73887812 ( 3) CTCAGCTT 1 chr22:23267321-23267401 ( 16) CTCAGCCC 1 chr1:142814848-142814928 ( 51) CTCAGCCC 1 chr6:31702667-31702747 ( 55) CCCAGCAC 1 chr22:17256607-17256687 ( 24) CCCAGCAC 1 chr18:3598087-3598167 ( 9) CCCAGCAC 1 chr1:32421238-32421318 ( 50) CCCAGCAC 1 chrX:1623765-1623845 ( 8) CCCAGCAC 1 chr1:26810565-26810645 ( 12) CTCAGCCT 1 chr22:21294186-21294266 ( 5) CTCAGCCT 1 chr22:19316635-19316715 ( 57) CTCAGCCT 1 chr17:78230142-78230222 ( 2) CTCAGCCT 1 chr6:150594449-150594529 ( 72) CTCAGCCT 1 chr22:20835942-20836022 ( 63) CTCAGCCT 1 chr22:19324248-19324328 ( 6) CCCAGCAT 1 chr16:11721476-11721556 ( 50) CCCATCTC 1 chr1:52214557-52214637 ( 27) CCCATCTC 1 chr20:353271-353351 ( 24) CCCATCTC 1 chr7:106453754-106453834 ( 9) TCCAGCTA 1 chr1:32475011-32475091 ( 61) TCCAGCTT 1 chr13:91837891-91837971 ( 35) TCCAGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.01532 E= 2.8e-005 -1223 184 -1223 -195 -1223 148 -1223 17 -1223 193 -1223 -1223 207 -1223 -1223 -1223 -1223 -1223 186 -195 -1223 193 -1223 -1223 -93 52 -1223 105 39 67 -1223 17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.8e-005 0.000000 0.937500 0.000000 0.062500 0.000000 0.729167 0.000000 0.270833 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 1.000000 0.000000 0.000000 0.125000 0.375000 0.000000 0.500000 0.312500 0.416667 0.000000 0.270833 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCYH MEME-3 regular expression -------------------------------------------------------------------------------- C[CT]CAGC[TC][CAT] -------------------------------------------------------------------------------- Time 12.50 secs. ******************************************************************************** ******************************************************************************** MOTIF AATAMAAA MEME-4 width = 8 sites = 37 llr = 304 E-value = 2.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9a2958aa pos.-specific C ::1:3::: probability G ::21:::: matrix T 1:6:22:: bits 2.1 * ** 1.9 * ** 1.7 ** * ** 1.4 ** * ** Relative 1.2 ** * *** Entropy 1.0 ** * *** (11.9 bits) 0.8 ** * *** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATAAAAA consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:13937764-13937844 64 1.04e-05 TTTATTTTAA AATAAAAA CATTtaggt chr16:81131908-81131988 46 1.04e-05 aaaaaataca aataaaaa gaatgcctaa chr22:22710728-22710808 2 1.04e-05 a aataaaaa atCTCATTGT chr1:26453428-26453508 44 2.19e-05 tatttttaaa aatacaaa aattagctgg chr16:11721476-11721556 65 2.19e-05 ctctactaaa aatacaaa aattagcc chr1:52214557-52214637 42 2.19e-05 ctctactaaa aatacaaa attatccagg chr20:353271-353351 39 2.19e-05 ctctactaaa aatacaaa aactagccag chr20:347661-347741 33 2.19e-05 ctctactaaa aatacaaa ataattagcc chr22:20062544-20062624 47 2.19e-05 ctactaaaaa aatacaaa aaattagccg chr22:20289637-20289717 64 2.19e-05 tctctaataa aatacaaa acattagcc chr22:22875584-22875664 14 2.19e-05 tataaagtaa aatacaaa aatttcctgg chr7:138040089-138040169 73 5.33e-05 catttcaaac aaaaaaaa chr1:201548075-201548155 27 5.33e-05 ctctactaat aatataaa aattagccaa chr22:20761913-20761993 31 5.33e-05 TTTTCAGAAT AATAATAA AACAAGAATT chr22:21923495-21923575 31 5.33e-05 ctctactaaa aatataaa aattagctgg chr22:22145779-22145859 51 5.33e-05 ctaaaatgtg aatataaa ctgtgcatta chr22:22367264-22367344 3 5.33e-05 tc aaaaaaaa ccaaaccaaa chr17:41400130-41400210 34 5.33e-05 tccgtctgaa aaaaaaaa aaaaaaaaaa chr22:20058624-20058704 37 5.33e-05 ctcaaaaaaa aaaaaaaa aaaatgaaac chr22:19324248-19324328 61 5.33e-05 ccagaagggc aataataa tcaccgcagt chr6:3055103-3055183 16 6.45e-05 gtgctgtact aagaaaaa ttcttctgcc chr6:28655062-28655142 56 6.45e-05 aaataagtgg aagaaaaa attcagtcag chr22:21447666-21447746 47 6.45e-05 gatctgtact aagaaaaa ttgttttgcc chr7:116726662-116726742 23 9.88e-05 TTTGTTTGGT AACAAAAA GCACCTGGAA chr22:23119426-23119506 57 1.22e-04 CATTAAAATA TATAAAAA CCATTTTAAC chr13:90479879-90479959 11 1.65e-04 ACAAACTTGG AATATTAA TGTtgctacc chr18:9966152-9966232 21 1.65e-04 gttatctgaa aatattaa gtggaaaatt chr22:22561167-22561247 34 1.65e-04 CTGGTCTCCC AATGAAAA CATAATCACT chr2:91768701-91768781 69 1.65e-04 GACAGGACCA AATGAAAA TATT chr1:32421238-32421318 10 1.87e-04 ATTTTTATT AAGAATAA AGGAgccggg chr22:22492958-22493038 9 1.87e-04 ttatgtca aagaataa tacctgtgtt chr22:21203031-21203111 51 2.00e-04 tcttagatac aacacaaa aagcacaagg chr22:23366769-23366849 35 2.58e-04 tctttttatc aacaataa ttggcaccca chr22:17190879-17190959 30 2.71e-04 acaccctccc aagactaa accaggaaga chr13:93117708-93117788 55 3.03e-04 cctatatact taaaaaaa ttgggttatc chr22:23340296-23340376 53 3.59e-04 aataaacttg aatgtaaa tagtttaaat chr9:131419788-131419868 2 4.30e-04 A TAAACAAA TAggccaggt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:13937764-13937844 1e-05 63_[+4]_9 chr16:81131908-81131988 1e-05 45_[+4]_27 chr22:22710728-22710808 1e-05 1_[+4]_71 chr1:26453428-26453508 2.2e-05 43_[+4]_29 chr16:11721476-11721556 2.2e-05 64_[+4]_8 chr1:52214557-52214637 2.2e-05 41_[+4]_31 chr20:353271-353351 2.2e-05 38_[+4]_34 chr20:347661-347741 2.2e-05 32_[+4]_40 chr22:20062544-20062624 2.2e-05 46_[+4]_26 chr22:20289637-20289717 2.2e-05 63_[+4]_9 chr22:22875584-22875664 2.2e-05 13_[+4]_59 chr7:138040089-138040169 5.3e-05 72_[+4] chr1:201548075-201548155 5.3e-05 26_[+4]_46 chr22:20761913-20761993 5.3e-05 30_[+4]_42 chr22:21923495-21923575 5.3e-05 30_[+4]_42 chr22:22145779-22145859 5.3e-05 50_[+4]_22 chr22:22367264-22367344 5.3e-05 2_[+4]_70 chr17:41400130-41400210 5.3e-05 33_[+4]_39 chr22:20058624-20058704 5.3e-05 36_[+4]_36 chr22:19324248-19324328 5.3e-05 60_[+4]_12 chr6:3055103-3055183 6.5e-05 15_[+4]_57 chr6:28655062-28655142 6.5e-05 55_[+4]_17 chr22:21447666-21447746 6.5e-05 46_[+4]_26 chr7:116726662-116726742 9.9e-05 22_[+4]_50 chr22:23119426-23119506 0.00012 56_[+4]_16 chr13:90479879-90479959 0.00016 10_[+4]_62 chr18:9966152-9966232 0.00016 20_[+4]_52 chr22:22561167-22561247 0.00016 33_[+4]_39 chr2:91768701-91768781 0.00016 68_[+4]_4 chr1:32421238-32421318 0.00019 9_[+4]_63 chr22:22492958-22493038 0.00019 8_[+4]_64 chr22:21203031-21203111 0.0002 50_[+4]_22 chr22:23366769-23366849 0.00026 34_[+4]_38 chr22:17190879-17190959 0.00027 29_[+4]_43 chr13:93117708-93117788 0.0003 54_[+4]_18 chr22:23340296-23340376 0.00036 52_[+4]_20 chr9:131419788-131419868 0.00043 1_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAMAAA width=8 seqs=37 chr3:13937764-13937844 ( 64) AATAAAAA 1 chr16:81131908-81131988 ( 46) AATAAAAA 1 chr22:22710728-22710808 ( 2) AATAAAAA 1 chr1:26453428-26453508 ( 44) AATACAAA 1 chr16:11721476-11721556 ( 65) AATACAAA 1 chr1:52214557-52214637 ( 42) AATACAAA 1 chr20:353271-353351 ( 39) AATACAAA 1 chr20:347661-347741 ( 33) AATACAAA 1 chr22:20062544-20062624 ( 47) AATACAAA 1 chr22:20289637-20289717 ( 64) AATACAAA 1 chr22:22875584-22875664 ( 14) AATACAAA 1 chr7:138040089-138040169 ( 73) AAAAAAAA 1 chr1:201548075-201548155 ( 27) AATATAAA 1 chr22:20761913-20761993 ( 31) AATAATAA 1 chr22:21923495-21923575 ( 31) AATATAAA 1 chr22:22145779-22145859 ( 51) AATATAAA 1 chr22:22367264-22367344 ( 3) AAAAAAAA 1 chr17:41400130-41400210 ( 34) AAAAAAAA 1 chr22:20058624-20058704 ( 37) AAAAAAAA 1 chr22:19324248-19324328 ( 61) AATAATAA 1 chr6:3055103-3055183 ( 16) AAGAAAAA 1 chr6:28655062-28655142 ( 56) AAGAAAAA 1 chr22:21447666-21447746 ( 47) AAGAAAAA 1 chr7:116726662-116726742 ( 23) AACAAAAA 1 chr22:23119426-23119506 ( 57) TATAAAAA 1 chr13:90479879-90479959 ( 11) AATATTAA 1 chr18:9966152-9966232 ( 21) AATATTAA 1 chr22:22561167-22561247 ( 34) AATGAAAA 1 chr2:91768701-91768781 ( 69) AATGAAAA 1 chr1:32421238-32421318 ( 10) AAGAATAA 1 chr22:22492958-22493038 ( 9) AAGAATAA 1 chr22:21203031-21203111 ( 51) AACACAAA 1 chr22:23366769-23366849 ( 35) AACAATAA 1 chr22:17190879-17190959 ( 30) AAGACTAA 1 chr13:93117708-93117788 ( 55) TAAAAAAA 1 chr22:23340296-23340376 ( 53) AATGTAAA 1 chr9:131419788-131419868 ( 2) TAAACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 2.2e-003 195 -1185 -1185 -157 207 -1185 -1185 -1185 -56 -169 -67 130 195 -1185 -167 -1185 118 18 -1185 -57 172 -1185 -1185 -16 207 -1185 -1185 -1185 207 -1185 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 2.2e-003 0.918919 0.000000 0.000000 0.081081 1.000000 0.000000 0.000000 0.000000 0.162162 0.081081 0.162162 0.594595 0.918919 0.000000 0.081081 0.000000 0.540541 0.297297 0.000000 0.162162 0.783784 0.000000 0.000000 0.216216 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAMAAA MEME-4 regular expression -------------------------------------------------------------------------------- AATA[AC][AT]AA -------------------------------------------------------------------------------- Time 16.05 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTWTDT MEME-5 width = 8 sites = 49 llr = 384 E-value = 1.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8:213:32 pos.-specific C :::::::: probability G ::::::2: matrix T 2a897a48 bits 2.1 * * 1.9 * * 1.7 * * * 1.4 ** * * * Relative 1.2 **** * * Entropy 1.0 ****** * (11.3 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTTTTT consensus A A A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:116726662-116726742 62 1.12e-05 CTTTTAATAG ATTTTTTT TTTAAACTGG chr22:21168047-21168127 50 1.12e-05 ttttattttt attttttt gagacagagt chr22:20828620-20828700 68 1.12e-05 attttatttt attttttt aagat chr22:21294186-21294266 58 1.12e-05 cgcctggcta attttttt atttttagta chr22:22853212-22853292 62 1.12e-05 cgcccagcta attttttt gtatttttta chr13:81349886-81349966 27 1.12e-05 TTACATTTAC Attttttt aaattatact chr11:43974572-43974652 11 2.23e-05 ccagatggac atttttat tgtggttttc chr22:20883633-20883713 68 2.23e-05 tgcccagcta atttttat atttA chr1:32421238-32421318 1 2.23e-05 . ATTTTTAT TAAGAATAAA chr19:47397874-47397954 3 2.23e-05 gt atttttat tggagatggg chr7:6626221-6626301 52 4.55e-05 cgcctggcta atttttgt aattttagca chr13:90914102-90914182 56 4.55e-05 atttcaggtc atttattt gttcatgtgt chr3:195871916-195871996 7 4.55e-05 TTTTAA ATTTATTt ttcattctat chr10:74021817-74021897 62 4.55e-05 ccaggccTTT ATttttgt tttgttggtt chr17:78230142-78230222 54 4.55e-05 tgcccggcta atttttgt atttttagta chr22:21930884-21930964 7 4.55e-05 ccccca atttttgt atttttagta chr13:90728044-90728124 62 4.55e-05 tttctttgtc atttattt ctgctctaat chr6:3338674-3338754 53 4.55e-05 tgcccagcta atttttgt gtttttagga chr1:142808483-142808563 44 6.76e-05 ttaactcgtc atttatat taggtatatc chr1:142822534-142822614 4 7.95e-05 GTA ATTTATGT AATTCAGTAA chr11:86648325-86648405 35 1.02e-04 TTAGCCCTAG ATTTTTTA AAACCATATT chr22:22130041-22130121 41 1.02e-04 cCTTGTCttt tttttttt gaaacgggag chr18:3622062-3622142 52 1.02e-04 TGAttctttt tttttttt gatatggagt chr22:22492958-22493038 50 1.02e-04 ttcaaagcac tttttttt ctagaaccta chr1:142791505-142791585 36 1.13e-04 TCGGGACATT ATATTTAT TATTTGGCAC chr2:91768701-91768781 35 1.13e-04 CTATAATCTC ATATTTAT GATAGTTTTG chr22:22862590-22862670 16 1.58e-04 CAGTTTTCAG ATTTTTAA ATACATTGAG chr1:26453428-26453508 35 1.58e-04 ccccatcact atttttaa aaatacaaaa chr3:13937764-13937844 53 2.04e-04 AAAAATGTCC TTTTATTT TAAAATAAAA chr22:20841452-20841532 57 2.04e-04 atccagcctc ttttttgt ttttttgaaa chr20:49125634-49125714 22 2.04e-04 tgccagaact ttttttgt ttgtttgttt chr3:142838014-142838094 53 2.04e-04 GGTCAGAAAG ATTTATTA CTTCCTTCGA chr8:12439770-12439850 20 2.04e-04 ccaggaactc ttttattt aataagcacc chr2:48127984-48128064 33 2.15e-04 acacacgtgt atatatat acacgtatat chr3:4498620-4498700 26 2.15e-04 acgtgtgtgt atatatat acgtgtgtgt chr10:104214930-10421501 72 2.27e-04 aggcagaaga atttttct t chr22:23233309-23233389 57 2.27e-04 ttataaactc atttttct gttttattct chr1:212519615-212519695 7 2.39e-04 cgtagt atatatgt aACATACTAT chr22:22447209-22447289 44 2.39e-04 TGGCTTGGCT ATAtatgt gtgtgtgtat chr3:15633639-15633719 6 2.39e-04 cgtgt atatatgt atacatacgt chr7:75473189-75473269 53 2.94e-04 aagtatgcgc ttttatat aaggaatgat chr22:20761913-20761993 17 2.94e-04 TCCATAAACT ATTATTTT CAGAATAATA chr22:22203888-22203968 65 2.94e-04 gctaatggaa atatttta ccactttg chr22:23366769-23366849 6 2.94e-04 ttcaa atatttta cagagtctga chr17:44215656-44215736 19 3.74e-04 aacagcaaaa atatttaa aaaacaatgt chr1:15562204-15562284 68 4.43e-04 accacgcccg attaattt cttta chr22:22883821-22883901 48 4.43e-04 atggtaaacc attattgt ccagtcagga chr22:22833301-22833381 21 4.43e-04 gtttgcagta atatatta tacagcaata chr13:90776679-90776759 31 4.89e-04 TTTATTTGCC TTTTATTA TAGTTGCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:116726662-116726742 1.1e-05 61_[+5]_11 chr22:21168047-21168127 1.1e-05 49_[+5]_23 chr22:20828620-20828700 1.1e-05 67_[+5]_5 chr22:21294186-21294266 1.1e-05 57_[+5]_15 chr22:22853212-22853292 1.1e-05 61_[+5]_11 chr13:81349886-81349966 1.1e-05 26_[+5]_46 chr11:43974572-43974652 2.2e-05 10_[+5]_62 chr22:20883633-20883713 2.2e-05 67_[+5]_5 chr1:32421238-32421318 2.2e-05 [+5]_72 chr19:47397874-47397954 2.2e-05 2_[+5]_70 chr7:6626221-6626301 4.6e-05 51_[+5]_21 chr13:90914102-90914182 4.6e-05 55_[+5]_17 chr3:195871916-195871996 4.6e-05 6_[+5]_66 chr10:74021817-74021897 4.6e-05 61_[+5]_11 chr17:78230142-78230222 4.6e-05 53_[+5]_19 chr22:21930884-21930964 4.6e-05 6_[+5]_66 chr13:90728044-90728124 4.6e-05 61_[+5]_11 chr6:3338674-3338754 4.6e-05 52_[+5]_20 chr1:142808483-142808563 6.8e-05 43_[+5]_29 chr1:142822534-142822614 7.9e-05 3_[+5]_69 chr11:86648325-86648405 0.0001 34_[+5]_38 chr22:22130041-22130121 0.0001 40_[+5]_32 chr18:3622062-3622142 0.0001 51_[+5]_21 chr22:22492958-22493038 0.0001 49_[+5]_23 chr1:142791505-142791585 0.00011 35_[+5]_37 chr2:91768701-91768781 0.00011 34_[+5]_38 chr22:22862590-22862670 0.00016 15_[+5]_57 chr1:26453428-26453508 0.00016 34_[+5]_38 chr3:13937764-13937844 0.0002 52_[+5]_20 chr22:20841452-20841532 0.0002 56_[+5]_16 chr20:49125634-49125714 0.0002 21_[+5]_51 chr3:142838014-142838094 0.0002 52_[+5]_20 chr8:12439770-12439850 0.0002 19_[+5]_53 chr2:48127984-48128064 0.00022 32_[+5]_40 chr3:4498620-4498700 0.00022 25_[+5]_47 chr10:104214930-10421501 0.00023 71_[+5]_1 chr22:23233309-23233389 0.00023 56_[+5]_16 chr1:212519615-212519695 0.00024 6_[+5]_66 chr22:22447209-22447289 0.00024 43_[+5]_29 chr3:15633639-15633719 0.00024 5_[+5]_67 chr7:75473189-75473269 0.00029 52_[+5]_20 chr22:20761913-20761993 0.00029 16_[+5]_56 chr22:22203888-22203968 0.00029 64_[+5]_8 chr22:23366769-23366849 0.00029 5_[+5]_67 chr17:44215656-44215736 0.00037 18_[+5]_54 chr1:15562204-15562284 0.00044 67_[+5]_5 chr22:22883821-22883901 0.00044 47_[+5]_25 chr22:22833301-22833381 0.00044 20_[+5]_52 chr13:90776679-90776759 0.00049 30_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTWTDT width=8 seqs=49 chr7:116726662-116726742 ( 62) ATTTTTTT 1 chr22:21168047-21168127 ( 50) ATTTTTTT 1 chr22:20828620-20828700 ( 68) ATTTTTTT 1 chr22:21294186-21294266 ( 58) ATTTTTTT 1 chr22:22853212-22853292 ( 62) ATTTTTTT 1 chr13:81349886-81349966 ( 27) ATTTTTTT 1 chr11:43974572-43974652 ( 11) ATTTTTAT 1 chr22:20883633-20883713 ( 68) ATTTTTAT 1 chr1:32421238-32421318 ( 1) ATTTTTAT 1 chr19:47397874-47397954 ( 3) ATTTTTAT 1 chr7:6626221-6626301 ( 52) ATTTTTGT 1 chr13:90914102-90914182 ( 56) ATTTATTT 1 chr3:195871916-195871996 ( 7) ATTTATTT 1 chr10:74021817-74021897 ( 62) ATTTTTGT 1 chr17:78230142-78230222 ( 54) ATTTTTGT 1 chr22:21930884-21930964 ( 7) ATTTTTGT 1 chr13:90728044-90728124 ( 62) ATTTATTT 1 chr6:3338674-3338754 ( 53) ATTTTTGT 1 chr1:142808483-142808563 ( 44) ATTTATAT 1 chr1:142822534-142822614 ( 4) ATTTATGT 1 chr11:86648325-86648405 ( 35) ATTTTTTA 1 chr22:22130041-22130121 ( 41) TTTTTTTT 1 chr18:3622062-3622142 ( 52) TTTTTTTT 1 chr22:22492958-22493038 ( 50) TTTTTTTT 1 chr1:142791505-142791585 ( 36) ATATTTAT 1 chr2:91768701-91768781 ( 35) ATATTTAT 1 chr22:22862590-22862670 ( 16) ATTTTTAA 1 chr1:26453428-26453508 ( 35) ATTTTTAA 1 chr3:13937764-13937844 ( 53) TTTTATTT 1 chr22:20841452-20841532 ( 57) TTTTTTGT 1 chr20:49125634-49125714 ( 22) TTTTTTGT 1 chr3:142838014-142838094 ( 53) ATTTATTA 1 chr8:12439770-12439850 ( 20) TTTTATTT 1 chr2:48127984-48128064 ( 33) ATATATAT 1 chr3:4498620-4498700 ( 26) ATATATAT 1 chr10:104214930-10421501 ( 72) ATTTTTCT 1 chr22:23233309-23233389 ( 57) ATTTTTCT 1 chr1:212519615-212519695 ( 7) ATATATGT 1 chr22:22447209-22447289 ( 44) ATATATGT 1 chr3:15633639-15633719 ( 6) ATATATGT 1 chr7:75473189-75473269 ( 53) TTTTATAT 1 chr22:20761913-20761993 ( 17) ATTATTTT 1 chr22:22203888-22203968 ( 65) ATATTTTA 1 chr22:23366769-23366849 ( 6) ATATTTTA 1 chr17:44215656-44215736 ( 19) ATATTTAA 1 chr1:15562204-15562284 ( 68) ATTAATTT 1 chr22:22883821-22883901 ( 48) ATTATTGT 1 chr22:22833301-22833381 ( 21) ATATATTA 1 chr13:90776679-90776759 ( 31) TTTTATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 1.4e-005 178 -1226 -1226 -39 -1226 -1226 -1226 205 -9 -1226 -1226 169 -196 -1226 -1226 196 54 -1226 -1226 144 -1226 -1226 -1226 205 15 -268 -8 90 -38 -1226 -1226 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.4e-005 0.816327 0.000000 0.000000 0.183673 0.000000 0.000000 0.000000 1.000000 0.224490 0.000000 0.000000 0.775510 0.061224 0.000000 0.000000 0.938776 0.346939 0.000000 0.000000 0.653061 0.000000 0.000000 0.000000 1.000000 0.265306 0.040816 0.244898 0.448980 0.183673 0.000000 0.000000 0.816327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTWTDT MEME-5 regular expression -------------------------------------------------------------------------------- AT[TA]T[TA]T[TAG]T -------------------------------------------------------------------------------- Time 19.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22873020-22873100 6.71e-03 2_[+2(1.61e-05)]_18_[+1(7.14e-05)]_\ 44 chr2:91792136-91792216 3.42e-01 80 chr22:22054112-22054192 9.65e-02 80 chr22:21961682-21961762 1.08e-03 3_[+3(3.50e-05)]_5_[+2(1.61e-05)]_\ 24_[+2(8.35e-05)]_24 chr22:23233309-23233389 1.75e-01 80 chr1:173444479-173444559 3.97e-02 80 chr22:22833301-22833381 5.82e-02 80 chr22:23119426-23119506 9.00e-02 80 chr22:20735861-20735941 1.20e-01 41_[+2(8.35e-05)]_31 chr19:11675426-11675506 4.86e-02 80 chr22:19324248-19324328 3.12e-04 60_[+4(5.33e-05)]_12 chr13:81349886-81349966 4.25e-02 26_[+5(1.12e-05)]_46 chr18:580301-580381 9.51e-01 80 chr22:21219338-21219418 3.60e-02 64_[+2(1.61e-05)]_8 chr22:22853212-22853292 4.97e-05 53_[+3(3.50e-05)]_[+5(1.12e-05)]_11 chr13:91837891-91837971 3.47e-01 80 chr22:23366769-23366849 6.99e-03 80 chr22:22492958-22493038 2.99e-02 80 chr22:22875584-22875664 8.98e-06 13_[+4(2.19e-05)]_46_[+2(1.61e-05)]_\ 5 chr22:22710728-22710808 9.47e-03 1_[+4(1.04e-05)]_71 chr6:3338674-3338754 7.91e-05 44_[+3(3.50e-05)]_[+5(4.55e-05)]_20 chr2:91768701-91768781 1.09e-02 80 chr19:16998807-16998887 1.79e-01 80 chr1:142794339-142794419 3.62e-01 80 chr22:19665448-19665528 1.38e-04 30_[+3(3.50e-05)]_5_[+2(1.61e-05)]_\ 29 chr22:20058624-20058704 1.12e-01 29_[+4(5.33e-05)]_[+4(5.33e-05)]_35 chr22:19264217-19264297 3.98e-02 17_[+2(6.76e-05)]_55 chr17:42086051-42086131 3.36e-03 4_[+2(4.99e-05)]_42_[+3(1.83e-05)]_\ 18 chr22:20834700-20834780 9.49e-02 56_[+1(7.14e-05)]_16 chr22:22140106-22140186 2.26e-02 11_[+2(1.61e-05)]_61 chr13:90728044-90728124 7.92e-02 61_[+5(4.55e-05)]_11 chr22:21203031-21203111 4.40e-01 80 chr22:20009943-20010023 6.13e-01 80 chr22:22561167-22561247 3.04e-01 80 chr22:21921640-21921720 1.05e-01 21_[+2(6.76e-05)]_51 chr19:47397874-47397954 1.44e-03 2_[+5(2.23e-05)]_26_[+2(6.76e-05)]_\ 36 chr13:90776679-90776759 4.09e-01 80 chr15:38544423-38544503 9.01e-01 80 chr22:22855637-22855717 2.00e-02 80 chr8:12439770-12439850 2.15e-01 80 chrX:1623765-1623845 1.53e-02 80 chr13:81247548-81247628 7.69e-01 80 chr22:20835942-20836022 1.08e-01 80 chr3:15633639-15633719 3.76e-01 80 chr1:156095871-156095951 2.57e-02 80 chr12:57635397-57635477 3.08e-01 80 chr6:150594449-150594529 8.27e-04 [+2(6.76e-05)]_72 chr1:32421238-32421318 3.36e-06 [+5(2.23e-05)]_72 chr22:22447209-22447289 1.78e-01 80 chr22:22163977-22164057 2.98e-02 15_[+2(6.76e-05)]_57 chr22:22249887-22249967 3.61e-01 80 chr22:22305271-22305351 5.55e-02 80 chr1:228677941-228678021 7.56e-01 80 chr18:3598087-3598167 6.65e-04 21_[+2(1.61e-05)]_51 chr22:17256607-17256687 1.11e-02 36_[+2(1.61e-05)]_36 chr3:4498620-4498700 4.07e-01 80 chr22:20193278-20193358 5.69e-01 80 chr22:21930884-21930964 1.12e-02 6_[+5(4.55e-05)]_66 chr22:22883821-22883901 1.01e-01 80 chr21:11039196-11039276 9.40e-01 80 chr13:93117708-93117788 3.72e-01 80 chr6:37611824-37611904 9.41e-01 80 chr1:142814848-142814928 3.65e-01 80 chr4:8480579-8480659 9.28e-01 80 chr21:11176954-11177034 3.63e-01 80 chr6:25027511-25027591 5.45e-02 40_[+3(7.18e-05)]_32 chr7:150672176-150672256 2.40e-01 80 chr17:78230142-78230222 5.12e-04 53_[+5(4.55e-05)]_19 chr22:22203888-22203968 2.87e-01 80 chr1:142837593-142837673 3.03e-01 80 chr1:173300115-173300195 3.07e-02 80 chr22:21276322-21276402 4.63e-01 80 chr22:19316635-19316715 5.17e-02 80 chr6:31693190-31693270 1.14e-02 72_[+3(3.50e-05)] chr5:131793325-131793405 1.93e-01 80 chr22:22359849-22359929 8.51e-02 80 chr1:55041451-55041531 3.31e-02 80 chr9:133323771-133323851 8.27e-01 80 chr7:138035200-138035280 1.05e-01 80 chr1:142808483-142808563 1.60e-01 43_[+5(6.76e-05)]_29 chr22:20289637-20289717 6.71e-04 63_[+4(2.19e-05)]_9 chr17:41400130-41400210 2.43e-02 31_[+4(5.33e-05)]_[+4(5.33e-05)]_\ [+4(5.33e-05)]_25 chr22:21455964-21456044 5.98e-04 37_[+3(3.50e-05)]_5_[+2(1.61e-05)]_\ 22 chr22:22730425-22730505 1.89e-02 80 chr18:9966152-9966232 2.73e-01 80 chr22:22193892-22193972 3.10e-01 80 chr22:21447666-21447746 7.87e-02 46_[+4(6.45e-05)]_26 chr22:21294186-21294266 1.91e-04 57_[+5(1.12e-05)]_15 chr22:20883633-20883713 8.02e-05 59_[+3(3.50e-05)]_[+5(2.23e-05)]_5 chr6:43337847-43337927 3.13e-01 80 chr3:9685971-9686051 7.43e-01 80 chr21:11136559-11136639 3.48e-01 80 chr3:125919514-125919594 1.05e-01 80 chr17:30334869-30334949 2.32e-01 80 chr22:19686228-19686308 1.66e-01 80 chr22:19800502-19800582 4.39e-01 80 chr6:150638240-150638320 4.41e-01 80 chr22:22367264-22367344 4.18e-02 2_[+4(5.33e-05)]_7_[+4(9.88e-05)]_\ 55 chr22:21213129-21213209 8.18e-01 80 chr22:19929020-19929100 1.23e-02 9_[+1(7.14e-05)]_63 chr22:20828620-20828700 3.34e-02 67_[+5(1.12e-05)]_5 chr19:21777410-21777490 1.53e-02 4_[+1(7.14e-05)]_68 chr22:20287350-20287430 7.67e-01 80 chr1:202132586-202132666 4.36e-01 80 chr22:21372673-21372753 1.58e-01 80 chr1:16957389-16957469 7.41e-02 80 chr2:172101644-172101724 1.40e-01 80 chr22:20062544-20062624 6.81e-03 46_[+4(2.19e-05)]_26 chr3:142838014-142838094 2.97e-01 80 chr22:23267321-23267401 3.89e-02 80 chr18:3622062-3622142 1.57e-01 80 chr21:11147228-11147308 4.08e-01 80 chr22:22130041-22130121 9.37e-03 80 chr18:3659713-3659793 1.36e-02 10_[+3(3.50e-05)]_62 chr22:23250499-23250579 1.38e-01 80 chr5:74974195-74974275 3.93e-01 80 chr7:150778311-150778391 2.33e-02 80 chr19:13210096-13210176 6.81e-01 80 chr22:22145779-22145859 1.37e-01 50_[+4(5.33e-05)]_22 chr20:347661-347741 2.80e-03 32_[+4(2.19e-05)]_40 chr22:23340296-23340376 9.11e-02 80 chr20:353271-353351 8.67e-05 38_[+4(2.19e-05)]_34 chr10:104214930-10421501 5.57e-02 80 chr9:131419788-131419868 1.94e-01 80 chr1:212519615-212519695 2.42e-03 34_[+2(6.76e-05)]_38 chr7:123633109-123633189 5.91e-03 57_[+3(7.18e-05)]_15 chr10:74079725-74079805 2.28e-01 80 chr22:21910093-21910173 1.56e-03 9_[+3(3.50e-05)]_5_[+2(1.61e-05)]_\ 50 chr22:20255429-20255509 7.15e-03 80 chr1:142791505-142791585 2.83e-02 80 chr7:116594094-116594174 6.81e-01 80 chr22:21923495-21923575 4.41e-04 30_[+4(5.33e-05)]_42 chr22:22158281-22158361 1.48e-02 61_[+3(8.99e-05)]_11 chr1:224544836-224544916 3.78e-02 28_[+2(4.99e-05)]_44 chr6:2765878-2765958 9.88e-01 80 chr1:142822534-142822614 1.87e-01 3_[+5(7.95e-05)]_69 chr1:212659649-212659729 8.05e-02 80 chr3:45184981-45185061 6.14e-01 80 chr18:3012951-3013031 3.33e-01 80 chr13:90479879-90479959 1.15e-02 80 chr1:115053450-115053530 1.37e-02 17_[+1(7.14e-05)]_55 chr22:20004171-20004251 9.94e-01 80 chr22:21274186-21274266 4.09e-01 80 chr4:57855707-57855787 1.21e-02 21_[+2(1.61e-05)]_51 chr2:48346213-48346293 5.87e-02 80 chr22:17190879-17190959 1.07e-01 80 chr6:16044706-16044786 3.28e-01 80 chr1:52214557-52214637 1.97e-03 41_[+4(2.19e-05)]_31 chr7:150019255-150019335 2.61e-01 80 chr8:54931982-54932062 2.10e-03 29_[+3(5.19e-05)]_5_[+2(1.61e-05)]_\ 30 chr19:39903240-39903320 1.69e-01 80 chr22:21168047-21168127 1.06e-02 37_[+5(2.23e-05)]_4_[+5(1.12e-05)]_\ 23 chr6:37396525-37396605 1.68e-01 80 chr7:106453754-106453834 5.36e-02 53_[+2(8.35e-05)]_19 chr22:20761913-20761993 2.95e-02 27_[+4(5.33e-05)]_45 chr15:34948370-34948450 2.21e-01 80 chr1:201548075-201548155 2.62e-03 26_[+4(5.33e-05)]_33_[+3(3.50e-05)]_\ 5 chr17:26684286-26684366 6.92e-01 80 chr22:22307273-22307353 1.01e-01 23_[+2(6.76e-05)]_49 chr3:14293101-14293181 3.26e-01 80 chr8:12422425-12422505 8.42e-01 80 chr1:231208420-231208500 1.16e-01 80 chr22:22994012-22994092 2.23e-01 80 chr16:11721476-11721556 6.42e-05 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4.73e-02 80 chr1:26810565-26810645 8.49e-02 80 chr14:31711890-31711970 1.68e-01 10_[+3(7.18e-05)]_62 chr1:12140202-12140282 4.10e-03 11_[+2(6.76e-05)]_61 chr12:116994352-11699443 8.78e-01 80 chr6:3339709-3339789 3.68e-02 5_[+2(1.61e-05)]_67 chr5:1132001-1132081 5.90e-02 80 chr6:3055103-3055183 7.28e-02 15_[+4(6.45e-05)]_57 chr16:81131908-81131988 1.54e-04 45_[+4(1.04e-05)]_27 chr2:48127984-48128064 3.70e-01 80 chr22:19484495-19484575 9.61e-02 80 chr17:41400333-41400413 6.99e-01 80 chr1:228555804-228555884 1.09e-01 80 chr7:138776976-138777056 1.43e-01 80 chr10:29100690-29100770 1.69e-02 80 chr11:9341184-9341264 8.64e-01 80 chr10:3932898-3932978 6.10e-01 80 chr7:106301276-106301356 7.28e-01 80 chr2:238873271-238873351 2.71e-01 80 chr5:73887732-73887812 2.44e-01 80 chr4:128551491-128551571 2.40e-02 20_[+3(7.18e-05)]_52 chr22:19278938-19279018 3.31e-02 42_[+3(7.18e-05)]_30 chr7:148395651-148395731 8.18e-01 80 chr22:21213332-21213412 6.29e-01 80 chr6:149568710-149568790 9.91e-01 80 chr10:3710159-3710239 1.30e-01 80 chr22:19166070-19166150 5.75e-01 80 chr6:16077608-16077688 4.73e-03 52_[+1(7.14e-05)]_20 chr17:62502832-62502912 1.99e-01 80 chr10:80733216-80733296 3.64e-03 37_[+1(7.14e-05)]_22_[+3(7.18e-05)]_\ 5 chr20:56964571-56964651 2.85e-01 80 chr3:44482875-44482955 8.35e-02 80 chr22:20185430-20185510 9.76e-01 80 chr1:15562204-15562284 3.68e-02 80 chr1:47799744-47799824 1.24e-01 80 chr15:64386888-64386968 1.18e-01 8_[+2(8.35e-05)]_24_[+2(8.35e-05)]_\ 32 chr16:10837702-10837782 9.95e-01 80 chr13:91056237-91056317 1.94e-01 80 chr7:116726662-116726742 7.51e-04 22_[+4(9.88e-05)]_31_[+5(1.12e-05)]_\ 11 chr15:64085270-64085350 9.56e-01 80 chr3:195871916-195871996 1.90e-03 6_[+5(4.55e-05)]_14_[+2(6.76e-05)]_\ 44 chr1:241860193-241860273 2.40e-02 18_[+3(7.18e-05)]_54 chr6:31702667-31702747 4.34e-03 12_[+1(7.14e-05)]_60 chr5:140018352-140018432 1.07e-01 80 chr17:46903273-46903353 1.52e-02 80 chr22:21166224-21166304 3.28e-02 80 chr13:90914102-90914182 1.57e-01 55_[+5(4.55e-05)]_17 chr7:6626221-6626301 7.98e-03 51_[+5(4.55e-05)]_21 chr2:97587554-97587634 2.56e-01 80 chr1:26453428-26453508 1.30e-06 4_[+1(7.14e-05)]_31_[+4(2.19e-05)]_\ 29 chr17:37170472-37170552 1.93e-01 80 chr22:20841452-20841532 1.72e-02 80 chr3:45102813-45102893 1.07e-02 18_[+2(1.61e-05)]_54 chr1:32475011-32475091 3.40e-01 80 chr7:143067411-143067491 6.36e-01 80 chr22:22862590-22862670 2.70e-01 80 chr7:75473189-75473269 1.10e-01 80 chr5:141736623-141736703 6.88e-01 80 chr7:138040089-138040169 6.90e-03 72_[+4(5.33e-05)] chr17:25902677-25902757 9.68e-01 80 chr22:23259325-23259405 8.48e-01 80 chr9:66458446-66458526 4.26e-01 80 chr3:13937764-13937844 1.13e-02 63_[+4(1.04e-05)]_9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************