******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETS1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:142506583-142506663 1.0000 80 chr12:131714698-13171477 1.0000 80 chr17:19912579-19912659 1.0000 80 chr11:3663395-3663475 1.0000 80 chr19:55816992-55817072 1.0000 80 chr9:97021490-97021570 1.0000 80 chr18:580342-580422 1.0000 80 chr2:220150936-220151016 1.0000 80 chr17:7094938-7095018 1.0000 80 chr19:7616353-7616433 1.0000 80 chr17:40559661-40559741 1.0000 80 chr1:47799876-47799956 1.0000 80 chr1:230562413-230562493 1.0000 80 chr15:63481572-63481652 1.0000 80 chr3:20083092-20083172 1.0000 80 chr16:30908461-30908541 1.0000 80 chr9:131965182-131965262 1.0000 80 chr5:81267834-81267914 1.0000 80 chr1:17338445-17338525 1.0000 80 chr19:49479597-49479677 1.0000 80 chr15:41099752-41099832 1.0000 80 chr19:48103714-48103794 1.0000 80 chr1:156308535-156308615 1.0000 80 chr19:58708528-58708608 1.0000 80 chr12:64798060-64798140 1.0000 80 chr19:507885-507965 1.0000 80 chr6:43215022-43215102 1.0000 80 chr15:79165112-79165192 1.0000 80 chr7:150780592-150780672 1.0000 80 chr19:55815803-55815883 1.0000 80 chr12:104323502-10432358 1.0000 80 chr4:146101754-146101834 1.0000 80 chr16:58664401-58664481 1.0000 80 chr12:12966213-12966293 1.0000 80 chr8:67525734-67525814 1.0000 80 chr9:138853260-138853340 1.0000 80 chr12:72332624-72332704 1.0000 80 chr7:143078240-143078320 1.0000 80 chr19:54682364-54682444 1.0000 80 chr20:25677523-25677603 1.0000 80 chr16:58718644-58718724 1.0000 80 chr17:3539931-3540011 1.0000 80 chr19:36208415-36208495 1.0000 80 chr2:232646288-232646368 1.0000 80 chr19:42463548-42463628 1.0000 80 chr9:115913176-115913256 1.0000 80 chr14:24701755-24701835 1.0000 80 chr16:4321906-4321986 1.0000 80 chr6:37611845-37611925 1.0000 80 chr21:33765254-33765334 1.0000 80 chr7:150689947-150690027 1.0000 80 chr15:38544445-38544525 1.0000 80 chr18:712482-712562 1.0000 80 chr17:25783352-25783432 1.0000 80 chr12:110151349-11015142 1.0000 80 chr1:151584410-151584490 1.0000 80 chr1:156052266-156052346 1.0000 80 chr8:145560358-145560438 1.0000 80 chr11:107436406-10743648 1.0000 80 chr19:16482464-16482544 1.0000 80 chr11:64578098-64578178 1.0000 80 chr12:88535976-88536056 1.0000 80 chr19:49148181-49148261 1.0000 80 chr17:74733997-74734077 1.0000 80 chr19:50163147-50163227 1.0000 80 chr1:244816071-244816151 1.0000 80 chr19:44598428-44598508 1.0000 80 chr19:45988700-45988780 1.0000 80 chr16:67700640-67700720 1.0000 80 chr19:44809196-44809276 1.0000 80 chr1:156251186-156251266 1.0000 80 chr16:15150045-15150125 1.0000 80 chr3:67048505-67048585 1.0000 80 chr8:144699758-144699838 1.0000 80 chr19:38397739-38397819 1.0000 80 chr19:48866438-48866518 1.0000 80 chr17:76250660-76250740 1.0000 80 chr11:64456010-64456090 1.0000 80 chr17:4634598-4634678 1.0000 80 chr2:202316259-202316339 1.0000 80 chr20:47805026-47805106 1.0000 80 chr17:7338633-7338713 1.0000 80 chr17:1933388-1933468 1.0000 80 chr6:26521438-26521518 1.0000 80 chr12:101673891-10167397 1.0000 80 chr10:111985599-11198567 1.0000 80 chr16:4817231-4817311 1.0000 80 chr2:54950526-54950606 1.0000 80 chr3:32147927-32148007 1.0000 80 chr4:2420549-2420629 1.0000 80 chr6:41703351-41703431 1.0000 80 chr17:7123150-7123230 1.0000 80 chr4:2538128-2538208 1.0000 80 chr5:178286918-178286998 1.0000 80 chr8:124054111-124054191 1.0000 80 chr3:69788469-69788549 1.0000 80 chr3:50397070-50397150 1.0000 80 chr22:39151607-39151687 1.0000 80 chr8:145159787-145159867 1.0000 80 chr4:1857956-1858036 1.0000 80 chr1:155225299-155225379 1.0000 80 chr11:134123326-13412340 1.0000 80 chr19:1241652-1241732 1.0000 80 chr7:100254002-100254082 1.0000 80 chr8:143484601-143484681 1.0000 80 chr2:27255756-27255836 1.0000 80 chr9:104160995-104161075 1.0000 80 chr6:157801080-157801160 1.0000 80 chr19:49248608-49248688 1.0000 80 chr19:52097733-52097813 1.0000 80 chr19:49310028-49310108 1.0000 80 chr17:38083873-38083953 1.0000 80 chr16:88866497-88866577 1.0000 80 chr3:183892483-183892563 1.0000 80 chr8:143808510-143808590 1.0000 80 chr5:1345127-1345207 1.0000 80 chr16:19535092-19535172 1.0000 80 chr1:156542324-156542404 1.0000 80 chr10:44144318-44144398 1.0000 80 chr17:38673161-38673241 1.0000 80 chr2:217277068-217277148 1.0000 80 chr14:73493957-73494037 1.0000 80 chr20:30865382-30865462 1.0000 80 chr19:49947063-49947143 1.0000 80 chr1:247095509-247095589 1.0000 80 chr9:130700104-130700184 1.0000 80 chr15:75182334-75182414 1.0000 80 chr12:861520-861600 1.0000 80 chr19:58838294-58838374 1.0000 80 chr16:46918129-46918209 1.0000 80 chr3:50388516-50388596 1.0000 80 chr20:62694379-62694459 1.0000 80 chr11:66138863-66138943 1.0000 80 chr20:3026608-3026688 1.0000 80 chr5:168006634-168006714 1.0000 80 chr1:36839536-36839616 1.0000 80 chr16:11038300-11038380 1.0000 80 chr17:7760556-7760636 1.0000 80 chr9:131038568-131038648 1.0000 80 chr18:77439446-77439526 1.0000 80 chr15:41523435-41523515 1.0000 80 chr18:9913577-9913657 1.0000 80 chr2:197504239-197504319 1.0000 80 chr19:50000606-50000686 1.0000 80 chr5:55008161-55008241 1.0000 80 chr5:137801204-137801284 1.0000 80 chr7:100888005-100888085 1.0000 80 chr2:99952917-99952997 1.0000 80 chr19:57946554-57946634 1.0000 80 chr19:44617436-44617516 1.0000 80 chr3:14166366-14166446 1.0000 80 chr20:62284650-62284730 1.0000 80 chr19:48922679-48922759 1.0000 80 chr3:98241868-98241948 1.0000 80 chr1:16380749-16380829 1.0000 80 chr17:36908096-36908176 1.0000 80 chr5:74807710-74807790 1.0000 80 chr19:51142540-51142620 1.0000 80 chr10:104262567-10426264 1.0000 80 chr9:95527247-95527327 1.0000 80 chr19:2819763-2819843 1.0000 80 chr19:49422154-49422234 1.0000 80 chr16:1381849-1381929 1.0000 80 chr19:55831275-55831355 1.0000 80 chr16:30103262-30103342 1.0000 80 chr2:44001113-44001193 1.0000 80 chr3:46037335-46037415 1.0000 80 chr3:158519814-158519894 1.0000 80 chr1:185126325-185126405 1.0000 80 chr15:74284585-74284665 1.0000 80 chr19:49224372-49224452 1.0000 80 chr16:88923517-88923597 1.0000 80 chr8:67025588-67025668 1.0000 80 chr19:46366538-46366618 1.0000 80 chr5:36152099-36152179 1.0000 80 chr13:26827969-26828049 1.0000 80 chr19:59086712-59086792 1.0000 80 chr9:101820297-101820377 1.0000 80 chr15:40650478-40650558 1.0000 80 chr12:67662583-67662663 1.0000 80 chr11:64014984-64015064 1.0000 80 chr16:30786739-30786819 1.0000 80 chr8:144025149-144025229 1.0000 80 chr17:72667513-72667593 1.0000 80 chr9:128024012-128024092 1.0000 80 chr16:31119639-31119719 1.0000 80 chr9:15422690-15422770 1.0000 80 chr1:2457666-2457746 1.0000 80 chr12:122985540-12298562 1.0000 80 chr20:45946123-45946203 1.0000 80 chr1:6673601-6673681 1.0000 80 chr7:150755067-150755147 1.0000 80 chr20:62289867-62289947 1.0000 80 chr16:12009109-12009189 1.0000 80 chr6:163148823-163148903 1.0000 80 chr10:103892683-10389276 1.0000 80 chr19:49385142-49385222 1.0000 80 chr22:22089872-22089952 1.0000 80 chr19:49013933-49014013 1.0000 80 chr17:58217279-58217359 1.0000 80 chr5:178157704-178157784 1.0000 80 chr19:7580895-7580975 1.0000 80 chr16:2009438-2009518 1.0000 80 chr16:5083871-5083951 1.0000 80 chr17:73285614-73285694 1.0000 80 chr1:243419262-243419342 1.0000 80 chr1:229761904-229761984 1.0000 80 chr17:76374669-76374749 1.0000 80 chr19:54606120-54606200 1.0000 80 chr19:6361476-6361556 1.0000 80 chr16:2097852-2097932 1.0000 80 chr8:90996363-90996443 1.0000 80 chr1:249167995-249168075 1.0000 80 chr19:10812065-10812145 1.0000 80 chr7:100450155-100450235 1.0000 80 chr17:73780716-73780796 1.0000 80 chr19:42746822-42746902 1.0000 80 chr19:489029-489109 1.0000 80 chr21:46961681-46961761 1.0000 80 chr1:12290033-12290113 1.0000 80 chr16:70473190-70473270 1.0000 80 chr2:219135114-219135194 1.0000 80 chr19:15543599-15543679 1.0000 80 chr19:56904612-56904692 1.0000 80 chr20:62587787-62587867 1.0000 80 chr5:95309853-95309933 1.0000 80 chr6:43597084-43597164 1.0000 80 chr1:27930658-27930738 1.0000 80 chr12:57146162-57146242 1.0000 80 chr8:99129420-99129500 1.0000 80 chr15:57614447-57614527 1.0000 80 chr19:49250482-49250562 1.0000 80 chr2:2617294-2617374 1.0000 80 chr3:61235772-61235852 1.0000 80 chr19:36239228-36239308 1.0000 80 chr1:243418736-243418816 1.0000 80 chr11:36310964-36311044 1.0000 80 chr11:65625717-65625797 1.0000 80 chr18:60382219-60382299 1.0000 80 chr4:152682126-152682206 1.0000 80 chr16:67875853-67875933 1.0000 80 chr9:130478017-130478097 1.0000 80 chr9:139137401-139137481 1.0000 80 chr2:37193726-37193806 1.0000 80 chr12:125473557-12547363 1.0000 80 chr6:28908837-28908917 1.0000 80 chr11:46414234-46414314 1.0000 80 chr6:110501304-110501384 1.0000 80 chr2:73298890-73298970 1.0000 80 chr19:1905224-1905304 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ETS1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ETS1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.165 C 0.334 G 0.338 T 0.163 Background letter frequencies (from file dataset with add-one prior applied): A 0.165 C 0.334 G 0.338 T 0.163 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGTAGTY MEME-1 width = 8 sites = 87 llr = 778 E-value = 3.4e-086 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::9::: pos.-specific C 1::::::5 probability G 11a21a:: matrix T 78:7::a5 bits 2.6 * 2.4 * 2.1 * * 1.8 * * Relative 1.6 ** *** Entropy 1.3 ****** (12.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGTAGTC consensus A G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:57146162-57146242 64 2.17e-06 CCGCCGGGAA TTGTAGTT CCCACTTGG chr10:103892683-10389276 66 2.17e-06 CATTCGGGAG TTGTAGTT CCTTTCC chr19:49224372-49224452 56 2.17e-06 ATGATGGAAG TTGTAGTT CAGACGATGG chr19:2819763-2819843 71 2.17e-06 CTGCTGGGAC TTGTAGTT CG chr5:168006634-168006714 52 2.17e-06 CTGCTGGGGA TTGTAGTT CTCCGGTTCG chr16:46918129-46918209 21 2.17e-06 GCTGTGGGAC TTGTAGTT CGCGTCACTC chr3:183892483-183892563 34 2.17e-06 CAGTCGGTAG TTGTAGTT TTGCTAAACC chr17:38083873-38083953 46 2.17e-06 CTTCTGGGAG TTGTAGTT TCTTCCGCTG chr6:157801080-157801160 31 2.17e-06 ATGCAGGGAC TTGTAGTT TCTAAGGCCC chr1:155225299-155225379 35 2.17e-06 ACCCCGGGAG TTGTAGTT CGGGACTGAG chr8:145159787-145159867 63 2.17e-06 CTCCTGGGAT TTGTAGTT CCACCGCGGC chr17:4634598-4634678 21 2.17e-06 GCCCTGGGAG TTGTAGTT CATCAAGCGG chr17:76250660-76250740 5 2.17e-06 GGAG TTGTAGTT CGCGCTCCCT chr1:156052266-156052346 69 2.17e-06 ATGCCGGGAG TTGTAGTT TCCC chr16:58718644-58718724 67 2.17e-06 ACGCTGGGAG TTGTAGTT TCCGCA chr19:49479597-49479677 69 2.17e-06 CTGCTGGGAG TTGTAGTT TTTT chr9:131965182-131965262 68 2.17e-06 ATCATGGGAG TTGTAGTT CAGGC chr19:1905224-1905304 51 6.61e-06 CTACTAGCAA TTGTAGTC CTTGCCCCAC chr16:67875853-67875933 58 6.61e-06 ATCACGGGAT TTGTAGTC TCCGTGGGCA chr18:60382219-60382299 64 6.61e-06 CCGCTGGGAC TTGTAGTC CACCATGTT chr1:27930658-27930738 70 6.61e-06 ACGCCGGGAC TTGTAGTc ccc chr13:26827969-26828049 60 6.61e-06 ATTCTGGGTA TTGTAGTC TGGGGCCCGG chr5:74807710-74807790 4 6.61e-06 GAG TTGTAGTC GCGATCCTGA chr3:50388516-50388596 67 6.61e-06 ACGCTGGGAT TTGTAGTC TTACAT chr19:58838294-58838374 64 6.61e-06 ACGCCGGGAA TTGTAGTC CTGGCGGGC chr1:244816071-244816151 33 6.61e-06 ATGCAGGGAG TTGTAGTC GAAGGGCTGT chr14:24701755-24701835 71 6.61e-06 CCCCTGGGAG TTGTAGTC TA chr19:42463548-42463628 50 6.61e-06 ATTGTGGGAG TTGTAGTC CTGACGGTGA chr7:150780592-150780672 49 6.61e-06 ATTGTGGAAC TTGTAGTC CGGCGCCGCG chr6:43215022-43215102 68 6.61e-06 CTGCTGGGAG TTGTAGTC TCAGC chr1:156308535-156308615 39 6.61e-06 GAAGTGGGAG TTGTAGTC TTACCGGGCC chr1:17338445-17338525 60 6.61e-06 CTGCCGGGAC TTGTAGTC CCCGCCTGCT chr9:97021490-97021570 4 6.61e-06 ATG TTGTAGTC CCTCGCTCCA chr2:219135114-219135194 40 8.81e-06 CTTCTGGGAG ATGTAGTT TCTGGTCTGT chr9:15422690-15422770 57 8.81e-06 CTGCCGGGAA ATGTAGTT TCTGATGCCC chr19:56904612-56904692 60 1.33e-05 CCGGCGGGAA ATGTAGTC TCACGCCGGT chr17:73285614-73285694 21 1.33e-05 TCACCGGGTA ATGTAGTC CTTCGCGACC chr19:46366538-46366618 41 1.33e-05 CTTCTGGGAA ATGTAGTC CCTTCGGAGG chr9:104160995-104161075 14 1.33e-05 ACGCTGGGAA ATGTAGTC CAGTAGCTGT chr19:7616353-7616433 4 1.33e-05 GAG ATGTAGTC CGGCGTCCAG chr17:7094938-7095018 73 1.33e-05 CTGCTGGGAA ATGTAGTC chr5:55008161-55008241 25 1.78e-05 CCGGCGGGAG TTGGAGTT CTGAATGCGC chr1:6673601-6673681 33 3.15e-05 CTCATGGGGG TTGGAGTC CCCAAGGTTT chr8:144699758-144699838 46 3.15e-05 CAGCTGGGAC TTGGAGTC CGCGGCCGCA chr19:36208415-36208495 63 4.53e-05 ACCCTGGGAG TGGTAGTC CACGCGGGCC chr19:489029-489109 59 5.19e-05 ATGGCGGGAG TTGTGGTT CAGCTGCGGG chr19:49422154-49422234 65 5.19e-05 CTGCTGGGAG TTGAAGTT GTCGGGAA chr16:88866497-88866577 52 5.19e-05 GAGCAGTTGC TTGTGGTT AAGTGCCGCT chr2:73298890-73298970 68 6.09e-05 GTTGTGGGGA GTGTAGTT TTTCG chr8:99129420-99129500 48 6.09e-05 ATTCTGGGAA CTGTAGTT TCGGCGACGC chr19:6361476-6361556 64 6.09e-05 ACGCCGGAAG CTGTAGTT CCGCCATCG chr16:30786739-30786819 31 6.09e-05 ATCCTGGGAA GTGTAGTT CCTGGTCCGC chr3:69788469-69788549 5 6.09e-05 GGAG CTGTAGTT TTCGTGGGAG chr11:65625717-65625797 25 7.48e-05 CCGACGGGAA ATGGAGTC CGCTGGCCCT chr16:70473190-70473270 1 7.48e-05 . ATGGAGTC CAGCGGGCGC chr5:178157704-178157784 40 7.48e-05 CCGCTGGGAA ATGGAGTC CACGAGAGGA chr19:48103714-48103794 66 7.48e-05 TGGGACGGTG ATGGAGTC GTGGCTC chr16:30908461-30908541 60 7.48e-05 GTTTCGGGAA ATGGAGTC CCTCCCGGGG chr17:73780716-73780796 43 8.84e-05 TCCCTGGGTA TTGTGGTC CTGTGCTTTG chr20:62694379-62694459 58 8.84e-05 CGCCTGGGAG TTGTGGTC CAGAgcgcgg chr2:54950526-54950606 26 8.84e-05 ATCCTGGGAC TTGTGGTC CCTTCCGCGC chr1:2457666-2457746 19 1.07e-04 CTGCCGGTAG CTGTAGTC CGGCCGTCGC chr19:44617436-44617516 43 1.07e-04 ATTCTGGGAA GTGTAGTC CAGACGCTCG chr8:124054111-124054191 64 1.07e-04 CTCCTGGGGC CTGTAGTC TCCACGCCC chr16:15150045-15150125 70 1.07e-04 GCGCTGGGAA GTGTAGTC CCA chr6:163148823-163148903 51 1.11e-04 CTGCTGGGAG TCGTAGTT CTAACGCGTA chr19:1241652-1241732 57 1.11e-04 CTGCCGGGAG TCGTAGTT CGCGCTTGCG chr9:138853260-138853340 12 1.27e-04 ATGCCGGGAG ATGTGGTT CTCGGACAGG chr7:142506583-142506663 53 1.27e-04 TCACAACAGG ATGTGGTT TGACATTTAC chr19:49013933-49014013 70 1.36e-04 CAAGGCATTG TGGGAGTT GTA chr16:30103262-30103342 67 1.36e-04 CGGGGGCCGC TGGGAGTT GCAGTC chr19:55831275-55831355 73 1.36e-04 CGGGGCATGC TGGGAGTT chr19:49248608-49248688 71 1.36e-04 CGTTGCCTTC TGGGAGTT GT chr3:50397070-50397150 72 1.36e-04 CGGGGTGTGC TGGGAGTT G chr19:49148181-49148261 72 1.36e-04 CAGAGCCCCG TGGGAGTT G chr19:55815803-55815883 69 1.36e-04 TAGAGCCTCC TGGGAGTT GTAG chr19:507885-507965 68 1.36e-04 CGGGGCTTGC TGGGAGTT GTAGT chr12:64798060-64798140 67 1.36e-04 CCCTGCATGC TGGGAGTT GTAGGC chr18:77439446-77439526 69 1.46e-04 ACGCTGGGAC TCGTAGTC CCGC chr19:42746822-42746902 31 1.59e-04 ACGCCGGGAA ATGAAGTC CACAAAAGCC chr16:4817231-4817311 52 1.59e-04 ACTGTGGTTA ATGTGGTC CTCAAAGGCA chr15:63481572-63481652 41 1.59e-04 TACAAGTCCC ATGAAGTC CCGGGGCGCG chr10:104262567-10426264 40 1.78e-04 AGTTTAAGAT TGGGAGTC GCATTTCCAA chr19:52097733-52097813 62 1.78e-04 CAGGGGCACC TGGGAGTC GTAGGCGGAT chr12:110151349-11015142 38 2.76e-04 ATGCCGGGAG TTGCAGTC CTCGCGAGGC chr19:44598428-44598508 66 3.32e-04 ATTCTGGGAA GTGGAGTC CAAACAT chr11:66138863-66138943 54 3.61e-04 CCGGCGGCCG AGGGAGTC GGCTGATGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57146162-57146242 2.2e-06 63_[+1]_9 chr10:103892683-10389276 2.2e-06 65_[+1]_7 chr19:49224372-49224452 2.2e-06 55_[+1]_17 chr19:2819763-2819843 2.2e-06 70_[+1]_2 chr5:168006634-168006714 2.2e-06 51_[+1]_21 chr16:46918129-46918209 2.2e-06 20_[+1]_52 chr3:183892483-183892563 2.2e-06 33_[+1]_39 chr17:38083873-38083953 2.2e-06 45_[+1]_27 chr6:157801080-157801160 2.2e-06 30_[+1]_42 chr1:155225299-155225379 2.2e-06 34_[+1]_38 chr8:145159787-145159867 2.2e-06 62_[+1]_10 chr17:4634598-4634678 2.2e-06 20_[+1]_52 chr17:76250660-76250740 2.2e-06 4_[+1]_68 chr1:156052266-156052346 2.2e-06 68_[+1]_4 chr16:58718644-58718724 2.2e-06 66_[+1]_6 chr19:49479597-49479677 2.2e-06 68_[+1]_4 chr9:131965182-131965262 2.2e-06 67_[+1]_5 chr19:1905224-1905304 6.6e-06 50_[+1]_22 chr16:67875853-67875933 6.6e-06 57_[+1]_15 chr18:60382219-60382299 6.6e-06 63_[+1]_9 chr1:27930658-27930738 6.6e-06 69_[+1]_3 chr13:26827969-26828049 6.6e-06 59_[+1]_13 chr5:74807710-74807790 6.6e-06 3_[+1]_69 chr3:50388516-50388596 6.6e-06 66_[+1]_6 chr19:58838294-58838374 6.6e-06 63_[+1]_9 chr1:244816071-244816151 6.6e-06 32_[+1]_40 chr14:24701755-24701835 6.6e-06 70_[+1]_2 chr19:42463548-42463628 6.6e-06 49_[+1]_23 chr7:150780592-150780672 6.6e-06 48_[+1]_24 chr6:43215022-43215102 6.6e-06 67_[+1]_5 chr1:156308535-156308615 6.6e-06 38_[+1]_34 chr1:17338445-17338525 6.6e-06 59_[+1]_13 chr9:97021490-97021570 6.6e-06 3_[+1]_69 chr2:219135114-219135194 8.8e-06 39_[+1]_33 chr9:15422690-15422770 8.8e-06 56_[+1]_16 chr19:56904612-56904692 1.3e-05 59_[+1]_13 chr17:73285614-73285694 1.3e-05 20_[+1]_52 chr19:46366538-46366618 1.3e-05 40_[+1]_32 chr9:104160995-104161075 1.3e-05 13_[+1]_59 chr19:7616353-7616433 1.3e-05 3_[+1]_69 chr17:7094938-7095018 1.3e-05 72_[+1] chr5:55008161-55008241 1.8e-05 24_[+1]_48 chr1:6673601-6673681 3.2e-05 32_[+1]_40 chr8:144699758-144699838 3.2e-05 45_[+1]_27 chr19:36208415-36208495 4.5e-05 62_[+1]_10 chr19:489029-489109 5.2e-05 58_[+1]_14 chr19:49422154-49422234 5.2e-05 64_[+1]_8 chr16:88866497-88866577 5.2e-05 51_[+1]_21 chr2:73298890-73298970 6.1e-05 67_[+1]_5 chr8:99129420-99129500 6.1e-05 47_[+1]_25 chr19:6361476-6361556 6.1e-05 63_[+1]_9 chr16:30786739-30786819 6.1e-05 30_[+1]_42 chr3:69788469-69788549 6.1e-05 4_[+1]_68 chr11:65625717-65625797 7.5e-05 24_[+1]_48 chr16:70473190-70473270 7.5e-05 [+1]_72 chr5:178157704-178157784 7.5e-05 39_[+1]_33 chr19:48103714-48103794 7.5e-05 65_[+1]_7 chr16:30908461-30908541 7.5e-05 59_[+1]_13 chr17:73780716-73780796 8.8e-05 42_[+1]_30 chr20:62694379-62694459 8.8e-05 57_[+1]_15 chr2:54950526-54950606 8.8e-05 25_[+1]_47 chr1:2457666-2457746 0.00011 18_[+1]_54 chr19:44617436-44617516 0.00011 42_[+1]_30 chr8:124054111-124054191 0.00011 63_[+1]_9 chr16:15150045-15150125 0.00011 69_[+1]_3 chr6:163148823-163148903 0.00011 50_[+1]_22 chr19:1241652-1241732 0.00011 56_[+1]_16 chr9:138853260-138853340 0.00013 11_[+1]_61 chr7:142506583-142506663 0.00013 52_[+1]_20 chr19:49013933-49014013 0.00014 69_[+1]_3 chr16:30103262-30103342 0.00014 66_[+1]_6 chr19:55831275-55831355 0.00014 72_[+1] chr19:49248608-49248688 0.00014 70_[+1]_2 chr3:50397070-50397150 0.00014 71_[+1]_1 chr19:49148181-49148261 0.00014 71_[+1]_1 chr19:55815803-55815883 0.00014 68_[+1]_4 chr19:507885-507965 0.00014 67_[+1]_5 chr12:64798060-64798140 0.00014 66_[+1]_6 chr18:77439446-77439526 0.00015 68_[+1]_4 chr19:42746822-42746902 0.00016 30_[+1]_42 chr16:4817231-4817311 0.00016 51_[+1]_21 chr15:63481572-63481652 0.00016 40_[+1]_32 chr10:104262567-10426264 0.00018 39_[+1]_33 chr19:52097733-52097813 0.00018 61_[+1]_11 chr12:110151349-11015142 0.00028 37_[+1]_35 chr19:44598428-44598508 0.00033 65_[+1]_7 chr11:66138863-66138943 0.00036 53_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTAGTY width=8 seqs=87 chr12:57146162-57146242 ( 64) TTGTAGTT 1 chr10:103892683-10389276 ( 66) TTGTAGTT 1 chr19:49224372-49224452 ( 56) TTGTAGTT 1 chr19:2819763-2819843 ( 71) TTGTAGTT 1 chr5:168006634-168006714 ( 52) TTGTAGTT 1 chr16:46918129-46918209 ( 21) TTGTAGTT 1 chr3:183892483-183892563 ( 34) TTGTAGTT 1 chr17:38083873-38083953 ( 46) TTGTAGTT 1 chr6:157801080-157801160 ( 31) TTGTAGTT 1 chr1:155225299-155225379 ( 35) TTGTAGTT 1 chr8:145159787-145159867 ( 63) TTGTAGTT 1 chr17:4634598-4634678 ( 21) TTGTAGTT 1 chr17:76250660-76250740 ( 5) TTGTAGTT 1 chr1:156052266-156052346 ( 69) TTGTAGTT 1 chr16:58718644-58718724 ( 67) TTGTAGTT 1 chr19:49479597-49479677 ( 69) TTGTAGTT 1 chr9:131965182-131965262 ( 68) TTGTAGTT 1 chr19:1905224-1905304 ( 51) TTGTAGTC 1 chr16:67875853-67875933 ( 58) TTGTAGTC 1 chr18:60382219-60382299 ( 64) TTGTAGTC 1 chr1:27930658-27930738 ( 70) TTGTAGTC 1 chr13:26827969-26828049 ( 60) TTGTAGTC 1 chr5:74807710-74807790 ( 4) TTGTAGTC 1 chr3:50388516-50388596 ( 67) TTGTAGTC 1 chr19:58838294-58838374 ( 64) TTGTAGTC 1 chr1:244816071-244816151 ( 33) TTGTAGTC 1 chr14:24701755-24701835 ( 71) TTGTAGTC 1 chr19:42463548-42463628 ( 50) TTGTAGTC 1 chr7:150780592-150780672 ( 49) TTGTAGTC 1 chr6:43215022-43215102 ( 68) TTGTAGTC 1 chr1:156308535-156308615 ( 39) TTGTAGTC 1 chr1:17338445-17338525 ( 60) TTGTAGTC 1 chr9:97021490-97021570 ( 4) TTGTAGTC 1 chr2:219135114-219135194 ( 40) ATGTAGTT 1 chr9:15422690-15422770 ( 57) ATGTAGTT 1 chr19:56904612-56904692 ( 60) ATGTAGTC 1 chr17:73285614-73285694 ( 21) ATGTAGTC 1 chr19:46366538-46366618 ( 41) ATGTAGTC 1 chr9:104160995-104161075 ( 14) ATGTAGTC 1 chr19:7616353-7616433 ( 4) ATGTAGTC 1 chr17:7094938-7095018 ( 73) ATGTAGTC 1 chr5:55008161-55008241 ( 25) TTGGAGTT 1 chr1:6673601-6673681 ( 33) TTGGAGTC 1 chr8:144699758-144699838 ( 46) TTGGAGTC 1 chr19:36208415-36208495 ( 63) TGGTAGTC 1 chr19:489029-489109 ( 59) TTGTGGTT 1 chr19:49422154-49422234 ( 65) TTGAAGTT 1 chr16:88866497-88866577 ( 52) TTGTGGTT 1 chr2:73298890-73298970 ( 68) GTGTAGTT 1 chr8:99129420-99129500 ( 48) CTGTAGTT 1 chr19:6361476-6361556 ( 64) CTGTAGTT 1 chr16:30786739-30786819 ( 31) GTGTAGTT 1 chr3:69788469-69788549 ( 5) CTGTAGTT 1 chr11:65625717-65625797 ( 25) ATGGAGTC 1 chr16:70473190-70473270 ( 1) ATGGAGTC 1 chr5:178157704-178157784 ( 40) ATGGAGTC 1 chr19:48103714-48103794 ( 66) ATGGAGTC 1 chr16:30908461-30908541 ( 60) ATGGAGTC 1 chr17:73780716-73780796 ( 43) TTGTGGTC 1 chr20:62694379-62694459 ( 58) TTGTGGTC 1 chr2:54950526-54950606 ( 26) TTGTGGTC 1 chr1:2457666-2457746 ( 19) CTGTAGTC 1 chr19:44617436-44617516 ( 43) GTGTAGTC 1 chr8:124054111-124054191 ( 64) CTGTAGTC 1 chr16:15150045-15150125 ( 70) GTGTAGTC 1 chr6:163148823-163148903 ( 51) TCGTAGTT 1 chr19:1241652-1241732 ( 57) TCGTAGTT 1 chr9:138853260-138853340 ( 12) ATGTGGTT 1 chr7:142506583-142506663 ( 53) ATGTGGTT 1 chr19:49013933-49014013 ( 70) TGGGAGTT 1 chr16:30103262-30103342 ( 67) TGGGAGTT 1 chr19:55831275-55831355 ( 73) TGGGAGTT 1 chr19:49248608-49248688 ( 71) TGGGAGTT 1 chr3:50397070-50397150 ( 72) TGGGAGTT 1 chr19:49148181-49148261 ( 72) TGGGAGTT 1 chr19:55815803-55815883 ( 69) TGGGAGTT 1 chr19:507885-507965 ( 68) TGGGAGTT 1 chr12:64798060-64798140 ( 67) TGGGAGTT 1 chr18:77439446-77439526 ( 69) TCGTAGTC 1 chr19:42746822-42746902 ( 31) ATGAAGTC 1 chr16:4817231-4817311 ( 52) ATGTGGTC 1 chr15:63481572-63481652 ( 41) ATGAAGTC 1 chr10:104262567-10426264 ( 40) TGGGAGTC 1 chr19:52097733-52097813 ( 62) TGGGAGTC 1 chr12:110151349-11015142 ( 38) TTGCAGTC 1 chr19:44598428-44598508 ( 66) GTGGAGTC 1 chr11:66138863-66138943 ( 54) AGGGAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.72594 E= 3.4e-086 40 -254 -255 203 -1309 -327 -118 232 -1309 -1309 157 -1309 -226 -485 -49 213 246 -1309 -188 -1309 -1309 -1309 157 -1309 -1309 -1309 -1309 262 -1309 66 -1309 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 3.4e-086 0.218391 0.057471 0.057471 0.666667 0.000000 0.034483 0.149425 0.816092 0.000000 0.000000 1.000000 0.000000 0.034483 0.011494 0.241379 0.712644 0.908046 0.000000 0.091954 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.528736 0.000000 0.471264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTY MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TG[TG]AGT[CT] -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF RACTACAA MEME-2 width = 8 sites = 73 llr = 702 E-value = 1.1e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5a::9:96 pos.-specific C ::a::a:1 probability G 5:::::11 matrix T :::a:::2 bits 2.6 * 2.4 * * 2.1 * ** * 1.8 * ** * Relative 1.6 ****** Entropy 1.3 ****** (13.9 bits) 1.0 ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AACTACAA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:2617294-2617374 26 2.22e-06 AGCAAGCGTa aactacaa tccccaggat chr16:2097852-2097932 66 2.22e-06 GGCGGCACAG AACTACAA CTCCCAG chr16:2009438-2009518 37 2.22e-06 ggagccgggg AACTACAA GTCCCATGGT chr19:7580895-7580975 52 2.22e-06 ggcgcgggcg AACTACAA GTCCCAGCAG chr16:31119639-31119719 24 2.22e-06 CCTCAGACCA AACTACAA CTCCCAGGAC chr5:36152099-36152179 40 2.22e-06 GCGGGACGGA AACTACAA TTCCCAGCAG chr19:58838294-58838374 2 2.22e-06 C AACTACAA TTCCCAGCAG chr12:861520-861600 2 2.22e-06 A AACTACAA CTCCCACGAG chr2:217277068-217277148 21 2.22e-06 TCCCGGCCCG AACTACAA ATCCCAGAAG chr19:49248608-49248688 2 2.22e-06 A AACTACAA TACCCATGAG chr3:50397070-50397150 9 2.22e-06 CTGGCTAG AACTACAA GTCCCAGGAG chr19:45988700-45988780 14 2.22e-06 CTGTCTAGGC AACTACAA GTCCCAGCAG chr19:49148181-49148261 2 2.22e-06 G AACTACAA CTCCCAGCAG chr7:150689947-150690027 2 2.22e-06 G AACTACAA ACCCCAGCAT chr17:3539931-3540011 8 2.22e-06 GCGCGGA AACTACAA CTCCCAGAGC chr15:63481572-63481652 28 2.22e-06 TCCCCGGAGG AACTACAA GTCCCATGAA chr19:55816992-55817072 2 2.22e-06 G AACTACAA GTCCCAGCAG chr19:49250482-49250562 7 6.78e-06 CCCTAA GACTACAA CTCCCAAAAT chr20:62587787-62587867 55 6.78e-06 GCGCGTCGCG GACTACAA GCCCCACAAG chr1:243419262-243419342 13 6.78e-06 TGAACGTGAG GACTACAA CTCCCGACGT chr19:49013933-49014013 1 6.78e-06 . GACTACAA CTCCCGTGAT chr7:150755067-150755147 46 6.78e-06 AGGACAAGAA GACTACAA CCCCCAGCCG chr12:122985540-12298562 20 6.78e-06 AGTCGCTAGA GACTACAA CTCCCGGAAT chr1:2457666-2457746 65 6.78e-06 CGACCCTGCG GACTACAA GGCCCGTG chr3:46037335-46037415 58 6.78e-06 CCGGGGCTCC GACTACAA CTCCCGGCGA chr19:51142540-51142620 18 6.78e-06 AGGGCTTAGA GACTACAA TTCCCGGCAG chr11:66138863-66138943 19 6.78e-06 CTCCGGAGCG GACTACAA CCCCGATCAC chr14:73493957-73494037 32 6.78e-06 GACTCTGAAT GACTACAA CTCCCAGTAC chr10:44144318-44144398 6 6.78e-06 GAATG GACTACAA CTCCCAGGAG chr11:134123326-13412340 50 6.78e-06 CTCGTGGGAG GACTACAA CCCCCAGGGT chr19:50163147-50163227 20 6.78e-06 GGGCTTGGAG GACTACAA CTCCCTGCAG chr17:25783352-25783432 42 6.78e-06 GCGCGGCGTG GACTACAA GTCCCAGCAT chr19:59086712-59086792 5 8.98e-06 GCCA AACTACAT TTTCCGGCAG chr3:14166366-14166446 54 8.98e-06 AGGCAGTAGA AACTACAT TTCCCCGAAA chr19:57946554-57946634 41 8.98e-06 GCAACGTGAG AACTACAT TACCCAGAAG chr1:151584410-151584490 47 8.98e-06 GCCACCCATA AACTACAT CTCCCAGGAG chr14:24701755-24701835 18 8.98e-06 GGGCAGAACG AACTACAT CTCCCATCGT chr12:12966213-12966293 31 8.98e-06 GGAGAACTAA AACTACAT TTCCCAGCAT chr16:70473190-70473270 47 1.35e-05 CCGCATCCAG GACTACAT CTCCCAGAAG chr10:111985599-11198567 65 1.35e-05 GCGGGTGCGG GACTACAT TTCCCAGG chr2:232646288-232646368 11 1.35e-05 ACGCGACAGA GACTACAT TTCCCAGCAT chr16:30908461-30908541 12 1.35e-05 ACCGGGTCAG GACTACAT TCCCCAGCAC chr20:62289867-62289947 22 1.80e-05 GGTTTTTCGA AACTACAG CTCCCGGCAG chr9:128024012-128024092 22 1.80e-05 GCCCGGGCGG AACTACAG CTCCCAGAGG chr16:46918129-46918209 67 1.80e-05 CAGCCAGGGG AACTACAG GGCCCA chr3:69788469-69788549 62 1.80e-05 GCCCGGGCCG AACTACAG ATCCCAGGCG chr16:4321906-4321986 9 1.80e-05 ACACGGAG AACTACAG CTCCCGCGAG chr6:110501304-110501384 3 2.25e-05 CA AACTACAC TTCCCATTGT chr19:36239228-36239308 60 2.25e-05 GGGAAGCTGG AACTACAC CTCCCAGGAA chr17:40559661-40559741 23 2.25e-05 TCTGTTACCC AACTACAC CTCCCAGCAG chr1:243418736-243418816 51 3.64e-05 AACCAACAAG GACTACAG TTCCCAGCGG chr20:3026608-3026688 24 3.64e-05 ACAGCCCGAG GACTACAG GTCCCAAGGT chr19:44809196-44809276 56 3.64e-05 CTCACTCCTG GACTACAG TTCCCAGAAT chr15:41099752-41099832 39 3.64e-05 GTCGTGAATG AACTACGA CTCCCAGCAG chr19:55831275-55831355 2 4.42e-05 A AAATACAA GTCCCAGGAG chr7:100888005-100888085 41 4.42e-05 GGGCTCAGGA CACTACAA CTCCCAGGAG chr20:62694379-62694459 12 5.34e-05 GGTGGGTCAG GACTACAC TTCCCAGGAG chr2:54950526-54950606 71 5.34e-05 GCGCAGAGAG GACTACAC TT chr1:247095509-247095589 1 6.73e-05 . GACTACGA GTCCCACAGT chr12:104323502-10432358 33 6.73e-05 AGAGACCAAA GACTACGA CCCCCAGCAT chr1:47799876-47799956 14 6.73e-05 CCGAGCCGCA GACTACGA GTcccggcgg chr1:185126325-185126405 1 7.18e-05 . AACTACGT TTCCCAGCAG chr11:107436406-10743648 57 9.30e-05 GAGAAAACTG CACTACAT TTCCCATGAG chr17:19912579-19912659 3 9.30e-05 GG TACTACAT CTCCCAGCGA chr17:7094938-7095018 3 1.02e-04 CG GACTCCAA TTCCCAACAG chr17:74733997-74734077 13 1.16e-04 GGCCACCCGG GACTACGT TTCCCAGCGG chr12:88535976-88536056 8 1.30e-04 GAACGAG GACTTCAA ATCCCAGAGT chr19:54606120-54606200 9 1.46e-04 CGCATAGG GACCACAA CTCCCAGGGT chr16:11038300-11038380 45 1.46e-04 CACGCGGGTG AACTGCAT TTCCCAGCGC chr9:115913176-115913256 16 1.46e-04 CGCGTGTGGG GACCACAA CTCCCAGGCG chr19:36208415-36208495 5 1.46e-04 CGCG AACTGCAT TTCCCAGGGC chr5:178286918-178286998 14 1.62e-04 TCCTCCCGTG GACTCCAT TTCCTAGAGG chr6:43215022-43215102 2 1.62e-04 A GACTCCAT CTCCCGGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:2617294-2617374 2.2e-06 25_[+2]_47 chr16:2097852-2097932 2.2e-06 65_[+2]_7 chr16:2009438-2009518 2.2e-06 36_[+2]_36 chr19:7580895-7580975 2.2e-06 51_[+2]_21 chr16:31119639-31119719 2.2e-06 23_[+2]_49 chr5:36152099-36152179 2.2e-06 39_[+2]_33 chr19:58838294-58838374 2.2e-06 1_[+2]_71 chr12:861520-861600 2.2e-06 1_[+2]_71 chr2:217277068-217277148 2.2e-06 20_[+2]_52 chr19:49248608-49248688 2.2e-06 1_[+2]_71 chr3:50397070-50397150 2.2e-06 8_[+2]_64 chr19:45988700-45988780 2.2e-06 13_[+2]_59 chr19:49148181-49148261 2.2e-06 1_[+2]_71 chr7:150689947-150690027 2.2e-06 1_[+2]_71 chr17:3539931-3540011 2.2e-06 7_[+2]_65 chr15:63481572-63481652 2.2e-06 27_[+2]_45 chr19:55816992-55817072 2.2e-06 1_[+2]_71 chr19:49250482-49250562 6.8e-06 6_[+2]_66 chr20:62587787-62587867 6.8e-06 54_[+2]_18 chr1:243419262-243419342 6.8e-06 12_[+2]_60 chr19:49013933-49014013 6.8e-06 [+2]_72 chr7:150755067-150755147 6.8e-06 45_[+2]_27 chr12:122985540-12298562 6.8e-06 19_[+2]_53 chr1:2457666-2457746 6.8e-06 64_[+2]_8 chr3:46037335-46037415 6.8e-06 57_[+2]_15 chr19:51142540-51142620 6.8e-06 17_[+2]_55 chr11:66138863-66138943 6.8e-06 18_[+2]_54 chr14:73493957-73494037 6.8e-06 31_[+2]_41 chr10:44144318-44144398 6.8e-06 5_[+2]_67 chr11:134123326-13412340 6.8e-06 49_[+2]_23 chr19:50163147-50163227 6.8e-06 19_[+2]_53 chr17:25783352-25783432 6.8e-06 41_[+2]_31 chr19:59086712-59086792 9e-06 4_[+2]_68 chr3:14166366-14166446 9e-06 53_[+2]_19 chr19:57946554-57946634 9e-06 40_[+2]_32 chr1:151584410-151584490 9e-06 46_[+2]_26 chr14:24701755-24701835 9e-06 17_[+2]_55 chr12:12966213-12966293 9e-06 30_[+2]_42 chr16:70473190-70473270 1.3e-05 46_[+2]_26 chr10:111985599-11198567 1.3e-05 64_[+2]_8 chr2:232646288-232646368 1.3e-05 10_[+2]_62 chr16:30908461-30908541 1.3e-05 11_[+2]_61 chr20:62289867-62289947 1.8e-05 21_[+2]_51 chr9:128024012-128024092 1.8e-05 21_[+2]_51 chr16:46918129-46918209 1.8e-05 66_[+2]_6 chr3:69788469-69788549 1.8e-05 61_[+2]_11 chr16:4321906-4321986 1.8e-05 8_[+2]_64 chr6:110501304-110501384 2.3e-05 2_[+2]_70 chr19:36239228-36239308 2.3e-05 59_[+2]_13 chr17:40559661-40559741 2.3e-05 22_[+2]_50 chr1:243418736-243418816 3.6e-05 50_[+2]_22 chr20:3026608-3026688 3.6e-05 23_[+2]_49 chr19:44809196-44809276 3.6e-05 55_[+2]_17 chr15:41099752-41099832 3.6e-05 38_[+2]_34 chr19:55831275-55831355 4.4e-05 1_[+2]_71 chr7:100888005-100888085 4.4e-05 40_[+2]_32 chr20:62694379-62694459 5.3e-05 11_[+2]_61 chr2:54950526-54950606 5.3e-05 70_[+2]_2 chr1:247095509-247095589 6.7e-05 [+2]_72 chr12:104323502-10432358 6.7e-05 32_[+2]_40 chr1:47799876-47799956 6.7e-05 13_[+2]_59 chr1:185126325-185126405 7.2e-05 [+2]_72 chr11:107436406-10743648 9.3e-05 56_[+2]_16 chr17:19912579-19912659 9.3e-05 2_[+2]_70 chr17:7094938-7095018 0.0001 2_[+2]_70 chr17:74733997-74734077 0.00012 12_[+2]_60 chr12:88535976-88536056 0.00013 7_[+2]_65 chr19:54606120-54606200 0.00015 8_[+2]_64 chr16:11038300-11038380 0.00015 44_[+2]_28 chr9:115913176-115913256 0.00015 15_[+2]_57 chr19:36208415-36208495 0.00015 4_[+2]_68 chr5:178286918-178286998 0.00016 13_[+2]_59 chr6:43215022-43215102 0.00016 1_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RACTACAA width=8 seqs=73 chr2:2617294-2617374 ( 26) AACTACAA 1 chr16:2097852-2097932 ( 66) AACTACAA 1 chr16:2009438-2009518 ( 37) AACTACAA 1 chr19:7580895-7580975 ( 52) AACTACAA 1 chr16:31119639-31119719 ( 24) AACTACAA 1 chr5:36152099-36152179 ( 40) AACTACAA 1 chr19:58838294-58838374 ( 2) AACTACAA 1 chr12:861520-861600 ( 2) AACTACAA 1 chr2:217277068-217277148 ( 21) AACTACAA 1 chr19:49248608-49248688 ( 2) AACTACAA 1 chr3:50397070-50397150 ( 9) AACTACAA 1 chr19:45988700-45988780 ( 14) AACTACAA 1 chr19:49148181-49148261 ( 2) AACTACAA 1 chr7:150689947-150690027 ( 2) AACTACAA 1 chr17:3539931-3540011 ( 8) AACTACAA 1 chr15:63481572-63481652 ( 28) AACTACAA 1 chr19:55816992-55817072 ( 2) AACTACAA 1 chr19:49250482-49250562 ( 7) GACTACAA 1 chr20:62587787-62587867 ( 55) GACTACAA 1 chr1:243419262-243419342 ( 13) GACTACAA 1 chr19:49013933-49014013 ( 1) GACTACAA 1 chr7:150755067-150755147 ( 46) GACTACAA 1 chr12:122985540-12298562 ( 20) GACTACAA 1 chr1:2457666-2457746 ( 65) GACTACAA 1 chr3:46037335-46037415 ( 58) GACTACAA 1 chr19:51142540-51142620 ( 18) GACTACAA 1 chr11:66138863-66138943 ( 19) GACTACAA 1 chr14:73493957-73494037 ( 32) GACTACAA 1 chr10:44144318-44144398 ( 6) GACTACAA 1 chr11:134123326-13412340 ( 50) GACTACAA 1 chr19:50163147-50163227 ( 20) GACTACAA 1 chr17:25783352-25783432 ( 42) GACTACAA 1 chr19:59086712-59086792 ( 5) AACTACAT 1 chr3:14166366-14166446 ( 54) AACTACAT 1 chr19:57946554-57946634 ( 41) AACTACAT 1 chr1:151584410-151584490 ( 47) AACTACAT 1 chr14:24701755-24701835 ( 18) AACTACAT 1 chr12:12966213-12966293 ( 31) AACTACAT 1 chr16:70473190-70473270 ( 47) GACTACAT 1 chr10:111985599-11198567 ( 65) GACTACAT 1 chr2:232646288-232646368 ( 11) GACTACAT 1 chr16:30908461-30908541 ( 12) GACTACAT 1 chr20:62289867-62289947 ( 22) AACTACAG 1 chr9:128024012-128024092 ( 22) AACTACAG 1 chr16:46918129-46918209 ( 67) AACTACAG 1 chr3:69788469-69788549 ( 62) AACTACAG 1 chr16:4321906-4321986 ( 9) AACTACAG 1 chr6:110501304-110501384 ( 3) AACTACAC 1 chr19:36239228-36239308 ( 60) AACTACAC 1 chr17:40559661-40559741 ( 23) AACTACAC 1 chr1:243418736-243418816 ( 51) GACTACAG 1 chr20:3026608-3026688 ( 24) GACTACAG 1 chr19:44809196-44809276 ( 56) GACTACAG 1 chr15:41099752-41099832 ( 39) AACTACGA 1 chr19:55831275-55831355 ( 2) AAATACAA 1 chr7:100888005-100888085 ( 41) CACTACAA 1 chr20:62694379-62694459 ( 12) GACTACAC 1 chr2:54950526-54950606 ( 71) GACTACAC 1 chr1:247095509-247095589 ( 1) GACTACGA 1 chr12:104323502-10432358 ( 33) GACTACGA 1 chr1:47799876-47799956 ( 14) GACTACGA 1 chr1:185126325-185126405 ( 1) AACTACGT 1 chr11:107436406-10743648 ( 57) CACTACAT 1 chr17:19912579-19912659 ( 3) TACTACAT 1 chr17:7094938-7095018 ( 3) GACTCCAA 1 chr17:74733997-74734077 ( 13) GACTACGT 1 chr12:88535976-88536056 ( 8) GACTTCAA 1 chr19:54606120-54606200 ( 9) GACCACAA 1 chr16:11038300-11038380 ( 45) AACTGCAT 1 chr9:115913176-115913256 ( 16) GACCACAA 1 chr19:36208415-36208495 ( 5) AACTGCAT 1 chr5:178286918-178286998 ( 14) GACTCCAT 1 chr6:43215022-43215102 ( 2) GACTCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.8233 E= 1.1e-085 158 -360 46 -357 260 -1283 -1283 -1283 -359 156 -1283 -1283 -1283 -360 -1283 258 247 -302 -362 -357 -1283 158 -1283 -1283 247 -1283 -204 -1283 180 -228 -162 60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.1e-085 0.493151 0.027397 0.465753 0.013699 1.000000 0.000000 0.000000 0.000000 0.013699 0.986301 0.000000 0.000000 0.000000 0.027397 0.000000 0.972603 0.917808 0.041096 0.027397 0.013699 0.000000 1.000000 0.000000 0.000000 0.917808 0.000000 0.082192 0.000000 0.575342 0.068493 0.109589 0.246575 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-2 regular expression -------------------------------------------------------------------------------- [AG]ACTACA[AT] -------------------------------------------------------------------------------- Time 8.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAGSR MEME-3 width = 8 sites = 87 llr = 661 E-value = 1.4e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::7:16 pos.-specific C :aaa::51 probability G ::::3943 matrix T a::::1:: bits 2.6 * 2.4 * 2.1 * 1.8 * Relative 1.6 **** Entropy 1.3 ***** (11.0 bits) 1.0 ****** * 0.8 ****** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel TCCCAGCA consensus G GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:7580895-7580975 61 1.87e-05 gAACTACAAG TCCCAGCA GCTCCCGCTG chr5:36152099-36152179 49 1.87e-05 AAACTACAAT TCCCAGCA GGCCTTGGGC chr1:185126325-185126405 10 1.87e-05 AACTACGTT TCCCAGCA GGCATACAGT chr19:48922679-48922759 3 1.87e-05 TT TCCCAGCA GCCCCTGGAG chr3:14166366-14166446 10 1.87e-05 AACTACATT TCCCAGCA GGTCGCGCGC chr19:58838294-58838374 11 1.87e-05 CAACTACAAT TCCCAGCA GGCACCGCGC chr17:7123150-7123230 9 1.87e-05 ACTACAGC TCCCAGCA TGCCCCGGGG chr19:45988700-45988780 23 1.87e-05 CAACTACAAG TCCCAGCA GGCCCCGCGG chr19:49148181-49148261 11 1.87e-05 GAACTACAAC TCCCAGCA GGCCCCAGTG chr17:25783352-25783432 51 1.87e-05 GGACTACAAG TCCCAGCA TGCCCGGCCG chr2:232646288-232646368 20 1.87e-05 AGACTACATT TCCCAGCA TTCCAGCGGC chr12:12966213-12966293 40 1.87e-05 AAACTACATT TCCCAGCA TCCCGCGCGC chr19:507885-507965 8 1.87e-05 CTTCAAC TCCCAGCA TGCCGCGCGC chr15:41099752-41099832 48 1.87e-05 GAACTACGAC TCCCAGCA GCCCCCGTTG chr17:40559661-40559741 32 1.87e-05 CAACTACACC TCCCAGCA GGCAAGGTGA chr19:55816992-55817072 11 1.87e-05 GAACTACAAG TCCCAGCA GCCCCTGGGG chr19:36239228-36239308 69 3.76e-05 GAACTACACC TCCCAGGA AGCT chr3:61235772-61235852 42 3.76e-05 AGACTTCGTC TCCCAGGA GACATCTCGC chr6:43597084-43597164 55 3.76e-05 GCCCTACAAC TCCCAGGA GGCATCGCGG chr16:31119639-31119719 33 3.76e-05 AAACTACAAC TCCCAGGA CCCAGCGGGC chr19:55831275-55831355 11 3.76e-05 AAAATACAAG TCCCAGGA GGGCCGGGCG chr19:49422154-49422234 27 3.76e-05 CAAAAACGGC TCCCAGGA GTGGTAGCGT chr7:100888005-100888085 50 3.76e-05 ACACTACAAC TCCCAGGA GCCTCTGCGG chr20:62694379-62694459 21 3.76e-05 GGACTACACT TCCCAGGA GGCTGTGCGC chr10:44144318-44144398 15 3.76e-05 GGACTACAAC TCCCAGGA GTCTCCCCGC chr3:50397070-50397150 18 3.76e-05 GAACTACAAG TCCCAGGA GGCCATGAGC chr19:48866438-48866518 4 3.76e-05 AAC TCCCAGGA GGCGCCAGGG chr1:151584410-151584490 56 3.76e-05 AAACTACATC TCCCAGGA GGCCCCACGG chr16:70473190-70473270 56 4.68e-05 GGACTACATC TCCCAGAA GACAGCGCGC chr2:217277068-217277148 30 4.68e-05 GAACTACAAA TCCCAGAA GACACTGCAG chr19:44809196-44809276 65 4.68e-05 GGACTACAGT TCCCAGAA TGCTCCAA chr19:58708528-58708608 4 4.68e-05 GTG TCCCAGAA CTCACTGGCA chr19:49479597-49479677 5 4.68e-05 TAAC TCCCAGAA GCCTCTGGAC chr1:243418736-243418816 60 8.50e-05 GGACTACAGT TCCCAGCG GGCAGAGCGC chr16:11038300-11038380 54 8.50e-05 GAACTGCATT TCCCAGCG CCCCACGCGG chr19:49947063-49947143 8 8.50e-05 CCACAAG TCCCAGCG GCCTCTGAGC chr2:202316259-202316339 54 8.50e-05 AGAGCCACTC TCCCAGCG GCCTCCACGG chr17:74733997-74734077 22 8.50e-05 GGACTACGTT TCCCAGCG GGCCGAGCGG chr17:19912579-19912659 12 8.50e-05 GTACTACATC TCCCAGCG AGCCCCGCGC chr19:54606120-54606200 18 1.33e-04 GGACCACAAC TCCCAGGG TGCTCCGCGT chr19:44617436-44617516 24 1.33e-04 GGCAGGTGGA TCCCAGGG AATTCTGGGA chr19:36208415-36208495 14 1.33e-04 GAACTGCATT TCCCAGGG CCTCGGGGGT chr20:62289867-62289947 31 1.80e-04 AAACTACAGC TCCCGGCA GGCCCCAAGC chr2:44001113-44001193 6 1.80e-04 ACATT TCCCATGA TGCCCGTCTC chr16:30103262-30103342 6 1.80e-04 ACACT TCCCGGCA GGCTCAGCGC chr19:51142540-51142620 27 1.80e-04 AGACTACAAT TCCCGGCA GGTCTCGCGC chr17:7760556-7760636 25 1.80e-04 GAACCACAGC TCCCGGCA GCCCGCGGGG chr20:3026608-3026688 72 1.80e-04 CACGGTGGCG TCCCGGCA C chr19:49310028-49310108 8 1.80e-04 CTACAAC TCCCATGA AGCCCTGGGC chr10:111985599-11198567 40 1.80e-04 GCACTACGAT TCCCGGCA GCCGCGGGCG chr19:38397739-38397819 50 1.80e-04 CGCCTACGGC TCCCGGCA GCCCCCGCGC chr11:107436406-10743648 66 1.80e-04 GCACTACATT TCCCATGA GCCCGCG chr19:54682364-54682444 6 1.80e-04 acaat tcccatgA GCCTCCGGGG chr9:128024012-128024092 31 1.99e-04 GAACTACAGC TCCCAGAG GCCCCCGCGG chr12:88535976-88536056 17 1.99e-04 GGACTTCAAA TCCCAGAG TGCAGTTCTG chr17:3539931-3540011 17 1.99e-04 AAACTACAAC TCCCAGAG CTCATCTCGC chr7:100254002-100254082 42 2.42e-04 GCCGGACAGC TCCCGGGA TCCCTGGCGG chr12:122985540-12298562 29 2.61e-04 AGACTACAAC TCCCGGAA TGCAGCGGGG chr14:73493957-73494037 9 2.61e-04 GCCCCTCA TCCCGGAA AGGAAGACTC chr17:7094938-7095018 12 2.70e-04 GGACTCCAAT TCCCAACA GCCCTAGAGG chr3:46037335-46037415 35 2.89e-04 GGCCTGCAAC TCCCATCG GACTCCCGGG chr14:24701755-24701835 27 2.89e-04 GAACTACATC TCCCATCG TGCCAGGAGG chr16:58664401-58664481 12 2.89e-04 TCTACCCCGT TCCCATCG CAGAAGTAAT chr15:57614447-57614527 24 3.36e-04 GGTAACCTGA TCCCAGCC CAACGGTTCT chr16:88923517-88923597 35 3.36e-04 GCGCCGAGCC TCCCAAGA TGGCGGTGTG chr6:41703351-41703431 41 3.36e-04 CCGCCCCGCC TCCCAGCC GCTCTGCCTC chr19:49250482-49250562 16 4.37e-04 AGACTACAAC TCCCAAAA TGCCCTGGGG chr16:2009438-2009518 46 4.37e-04 gAACTACAAG TCCCATGG TGCATCGCGG chr11:64014984-64015064 51 4.37e-04 CGGAGTCCGC TCCCGGCG CCGCCCCTCC chr4:1857956-1858036 64 4.37e-04 GGACTACCGA TCCCGGCG TGCACCGGA chr15:79165112-79165192 8 4.37e-04 CTACCAG TCCCGGCG TGCCCTgggg chr6:43215022-43215102 11 4.37e-04 AGACTCCATC TCCCGGCG TGCCCTGCTC chr1:47799876-47799956 23 4.37e-04 AGACTACGAG Tcccggcg gccaccgcgc chr19:6361476-6361556 39 4.94e-04 GCGAGCGAGC TCCCAGGC GCAAAGCACG chr3:69788469-69788549 71 4.94e-04 GAACTACAGA TCCCAGGC GG chr5:178286918-178286998 59 4.94e-04 CTCCTCTAGG TCCCAGGC GCTCTGCGGA chr9:115913176-115913256 25 4.94e-04 GGACCACAAC TCCCAGGC GCCCGCGCGC chr20:47805026-47805106 70 6.01e-04 CCGTCCTGAG TCCCGGGG CCT chr8:144699758-144699838 9 6.01e-04 AAATGGAG TCCCGGGG GCGCGCAGCG chr19:44598428-44598508 47 6.01e-04 GGCTGGCGGG TCCCGGGG AATTCTGGGA chr16:30908461-30908541 70 6.01e-04 ATGGAGTCCC TCCCGGGG CGC chr19:49013933-49014013 10 6.38e-04 GACTACAAC TCCCGTGA TGCTCTGCGA chr19:50163147-50163227 29 6.38e-04 GGACTACAAC TCCCTGCA GCCCCTGCTG chr12:64798060-64798140 56 6.38e-04 CGCCGGCCGC TCCCTGCA TGCTGGGAGT chr3:158519814-158519894 23 6.77e-04 TCACGTGAGC TCCCGGAG TCATGTGACC chr22:39151607-39151687 44 6.77e-04 GCCCAGCACG TCCCGGAG AGGAGGAAGC chr20:45946123-45946203 54 6.95e-04 GGTGCCTGAG TCACAGCA CATGCCGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:7580895-7580975 1.9e-05 60_[+3]_12 chr5:36152099-36152179 1.9e-05 48_[+3]_24 chr1:185126325-185126405 1.9e-05 9_[+3]_63 chr19:48922679-48922759 1.9e-05 2_[+3]_70 chr3:14166366-14166446 1.9e-05 9_[+3]_63 chr19:58838294-58838374 1.9e-05 10_[+3]_62 chr17:7123150-7123230 1.9e-05 8_[+3]_64 chr19:45988700-45988780 1.9e-05 22_[+3]_50 chr19:49148181-49148261 1.9e-05 10_[+3]_62 chr17:25783352-25783432 1.9e-05 50_[+3]_22 chr2:232646288-232646368 1.9e-05 19_[+3]_53 chr12:12966213-12966293 1.9e-05 39_[+3]_33 chr19:507885-507965 1.9e-05 7_[+3]_65 chr15:41099752-41099832 1.9e-05 47_[+3]_25 chr17:40559661-40559741 1.9e-05 31_[+3]_41 chr19:55816992-55817072 1.9e-05 10_[+3]_62 chr19:36239228-36239308 3.8e-05 68_[+3]_4 chr3:61235772-61235852 3.8e-05 41_[+3]_31 chr6:43597084-43597164 3.8e-05 54_[+3]_18 chr16:31119639-31119719 3.8e-05 32_[+3]_40 chr19:55831275-55831355 3.8e-05 10_[+3]_62 chr19:49422154-49422234 3.8e-05 26_[+3]_46 chr7:100888005-100888085 3.8e-05 49_[+3]_23 chr20:62694379-62694459 3.8e-05 20_[+3]_52 chr10:44144318-44144398 3.8e-05 14_[+3]_58 chr3:50397070-50397150 3.8e-05 17_[+3]_55 chr19:48866438-48866518 3.8e-05 3_[+3]_69 chr1:151584410-151584490 3.8e-05 55_[+3]_17 chr16:70473190-70473270 4.7e-05 55_[+3]_17 chr2:217277068-217277148 4.7e-05 29_[+3]_43 chr19:44809196-44809276 4.7e-05 64_[+3]_8 chr19:58708528-58708608 4.7e-05 3_[+3]_69 chr19:49479597-49479677 4.7e-05 4_[+3]_68 chr1:243418736-243418816 8.5e-05 59_[+3]_13 chr16:11038300-11038380 8.5e-05 53_[+3]_19 chr19:49947063-49947143 8.5e-05 7_[+3]_65 chr2:202316259-202316339 8.5e-05 53_[+3]_19 chr17:74733997-74734077 8.5e-05 21_[+3]_51 chr17:19912579-19912659 8.5e-05 11_[+3]_61 chr19:54606120-54606200 0.00013 17_[+3]_55 chr19:44617436-44617516 0.00013 23_[+3]_49 chr19:36208415-36208495 0.00013 13_[+3]_59 chr20:62289867-62289947 0.00018 30_[+3]_42 chr2:44001113-44001193 0.00018 5_[+3]_67 chr16:30103262-30103342 0.00018 5_[+3]_67 chr19:51142540-51142620 0.00018 26_[+3]_46 chr17:7760556-7760636 0.00018 24_[+3]_48 chr20:3026608-3026688 0.00018 71_[+3]_1 chr19:49310028-49310108 0.00018 7_[+3]_65 chr10:111985599-11198567 0.00018 39_[+3]_33 chr19:38397739-38397819 0.00018 49_[+3]_23 chr11:107436406-10743648 0.00018 65_[+3]_7 chr19:54682364-54682444 0.00018 5_[+3]_67 chr9:128024012-128024092 0.0002 30_[+3]_42 chr12:88535976-88536056 0.0002 16_[+3]_56 chr17:3539931-3540011 0.0002 16_[+3]_56 chr7:100254002-100254082 0.00024 41_[+3]_31 chr12:122985540-12298562 0.00026 28_[+3]_44 chr14:73493957-73494037 0.00026 8_[+3]_64 chr17:7094938-7095018 0.00027 11_[+3]_61 chr3:46037335-46037415 0.00029 34_[+3]_38 chr14:24701755-24701835 0.00029 26_[+3]_46 chr16:58664401-58664481 0.00029 11_[+3]_61 chr15:57614447-57614527 0.00034 23_[+3]_49 chr16:88923517-88923597 0.00034 34_[+3]_38 chr6:41703351-41703431 0.00034 40_[+3]_32 chr19:49250482-49250562 0.00044 15_[+3]_57 chr16:2009438-2009518 0.00044 45_[+3]_27 chr11:64014984-64015064 0.00044 50_[+3]_22 chr4:1857956-1858036 0.00044 63_[+3]_9 chr15:79165112-79165192 0.00044 7_[+3]_65 chr6:43215022-43215102 0.00044 10_[+3]_62 chr1:47799876-47799956 0.00044 22_[+3]_50 chr19:6361476-6361556 0.00049 38_[+3]_34 chr3:69788469-69788549 0.00049 70_[+3]_2 chr5:178286918-178286998 0.00049 58_[+3]_14 chr9:115913176-115913256 0.00049 24_[+3]_48 chr20:47805026-47805106 0.0006 69_[+3]_3 chr8:144699758-144699838 0.0006 8_[+3]_64 chr19:44598428-44598508 0.0006 46_[+3]_26 chr16:30908461-30908541 0.0006 69_[+3]_3 chr19:49013933-49014013 0.00064 9_[+3]_63 chr19:50163147-50163227 0.00064 28_[+3]_44 chr12:64798060-64798140 0.00064 55_[+3]_17 chr3:158519814-158519894 0.00068 22_[+3]_50 chr22:39151607-39151687 0.00068 43_[+3]_29 chr20:45946123-45946203 0.00069 53_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAGSR width=8 seqs=87 chr19:7580895-7580975 ( 61) TCCCAGCA 1 chr5:36152099-36152179 ( 49) TCCCAGCA 1 chr1:185126325-185126405 ( 10) TCCCAGCA 1 chr19:48922679-48922759 ( 3) TCCCAGCA 1 chr3:14166366-14166446 ( 10) TCCCAGCA 1 chr19:58838294-58838374 ( 11) TCCCAGCA 1 chr17:7123150-7123230 ( 9) TCCCAGCA 1 chr19:45988700-45988780 ( 23) TCCCAGCA 1 chr19:49148181-49148261 ( 11) TCCCAGCA 1 chr17:25783352-25783432 ( 51) TCCCAGCA 1 chr2:232646288-232646368 ( 20) TCCCAGCA 1 chr12:12966213-12966293 ( 40) TCCCAGCA 1 chr19:507885-507965 ( 8) TCCCAGCA 1 chr15:41099752-41099832 ( 48) TCCCAGCA 1 chr17:40559661-40559741 ( 32) TCCCAGCA 1 chr19:55816992-55817072 ( 11) TCCCAGCA 1 chr19:36239228-36239308 ( 69) TCCCAGGA 1 chr3:61235772-61235852 ( 42) TCCCAGGA 1 chr6:43597084-43597164 ( 55) TCCCAGGA 1 chr16:31119639-31119719 ( 33) TCCCAGGA 1 chr19:55831275-55831355 ( 11) TCCCAGGA 1 chr19:49422154-49422234 ( 27) TCCCAGGA 1 chr7:100888005-100888085 ( 50) TCCCAGGA 1 chr20:62694379-62694459 ( 21) TCCCAGGA 1 chr10:44144318-44144398 ( 15) TCCCAGGA 1 chr3:50397070-50397150 ( 18) TCCCAGGA 1 chr19:48866438-48866518 ( 4) TCCCAGGA 1 chr1:151584410-151584490 ( 56) TCCCAGGA 1 chr16:70473190-70473270 ( 56) TCCCAGAA 1 chr2:217277068-217277148 ( 30) TCCCAGAA 1 chr19:44809196-44809276 ( 65) TCCCAGAA 1 chr19:58708528-58708608 ( 4) TCCCAGAA 1 chr19:49479597-49479677 ( 5) TCCCAGAA 1 chr1:243418736-243418816 ( 60) TCCCAGCG 1 chr16:11038300-11038380 ( 54) TCCCAGCG 1 chr19:49947063-49947143 ( 8) TCCCAGCG 1 chr2:202316259-202316339 ( 54) TCCCAGCG 1 chr17:74733997-74734077 ( 22) TCCCAGCG 1 chr17:19912579-19912659 ( 12) TCCCAGCG 1 chr19:54606120-54606200 ( 18) TCCCAGGG 1 chr19:44617436-44617516 ( 24) TCCCAGGG 1 chr19:36208415-36208495 ( 14) TCCCAGGG 1 chr20:62289867-62289947 ( 31) TCCCGGCA 1 chr2:44001113-44001193 ( 6) TCCCATGA 1 chr16:30103262-30103342 ( 6) TCCCGGCA 1 chr19:51142540-51142620 ( 27) TCCCGGCA 1 chr17:7760556-7760636 ( 25) TCCCGGCA 1 chr20:3026608-3026688 ( 72) TCCCGGCA 1 chr19:49310028-49310108 ( 8) TCCCATGA 1 chr10:111985599-11198567 ( 40) TCCCGGCA 1 chr19:38397739-38397819 ( 50) TCCCGGCA 1 chr11:107436406-10743648 ( 66) TCCCATGA 1 chr19:54682364-54682444 ( 6) TCCCATGA 1 chr9:128024012-128024092 ( 31) TCCCAGAG 1 chr12:88535976-88536056 ( 17) TCCCAGAG 1 chr17:3539931-3540011 ( 17) TCCCAGAG 1 chr7:100254002-100254082 ( 42) TCCCGGGA 1 chr12:122985540-12298562 ( 29) TCCCGGAA 1 chr14:73493957-73494037 ( 9) TCCCGGAA 1 chr17:7094938-7095018 ( 12) TCCCAACA 1 chr3:46037335-46037415 ( 35) TCCCATCG 1 chr14:24701755-24701835 ( 27) TCCCATCG 1 chr16:58664401-58664481 ( 12) TCCCATCG 1 chr15:57614447-57614527 ( 24) TCCCAGCC 1 chr16:88923517-88923597 ( 35) TCCCAAGA 1 chr6:41703351-41703431 ( 41) TCCCAGCC 1 chr19:49250482-49250562 ( 16) TCCCAAAA 1 chr16:2009438-2009518 ( 46) TCCCATGG 1 chr11:64014984-64015064 ( 51) TCCCGGCG 1 chr4:1857956-1858036 ( 64) TCCCGGCG 1 chr15:79165112-79165192 ( 8) TCCCGGCG 1 chr6:43215022-43215102 ( 11) TCCCGGCG 1 chr1:47799876-47799956 ( 23) TCCCGGCG 1 chr19:6361476-6361556 ( 39) TCCCAGGC 1 chr3:69788469-69788549 ( 71) TCCCAGGC 1 chr5:178286918-178286998 ( 59) TCCCAGGC 1 chr9:115913176-115913256 ( 25) TCCCAGGC 1 chr20:47805026-47805106 ( 70) TCCCGGGG 1 chr8:144699758-144699838 ( 9) TCCCGGGG 1 chr19:44598428-44598508 ( 47) TCCCGGGG 1 chr16:30908461-30908541 ( 70) TCCCGGGG 1 chr19:49013933-49014013 ( 10) TCCCGTGA 1 chr19:50163147-50163227 ( 29) TCCCTGCA 1 chr12:64798060-64798140 ( 56) TCCCTGCA 1 chr3:158519814-158519894 ( 23) TCCCGGAG 1 chr22:39151607-39151687 ( 44) TCCCGGAG 1 chr20:45946123-45946203 ( 54) TCACAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 1.4e-034 -1309 -1309 -1309 262 -1309 158 -1309 -1309 -384 157 -1309 -1309 -1309 158 -1309 -1309 213 -1309 -42 -283 -226 -1309 135 -66 -15 57 8 -1309 191 -227 -12 -1309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 1.4e-034 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.011494 0.988506 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.724138 0.000000 0.252874 0.022989 0.034483 0.000000 0.862069 0.103448 0.149425 0.494253 0.356322 0.000000 0.620690 0.068966 0.310345 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGSR MEME-3 regular expression -------------------------------------------------------------------------------- TCCC[AG]G[CG][AG] -------------------------------------------------------------------------------- Time 12.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGGGA MEME-4 width = 8 sites = 79 llr = 607 E-value = 1.4e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::::a pos.-specific C 3273:::: probability G :61:aaa: matrix T 7217:::: bits 2.6 * 2.4 * 2.1 * 1.8 * Relative 1.6 ***** Entropy 1.3 * ***** (11.1 bits) 1.0 * ***** 0.8 * ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCTGGGA consensus CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:163148823-163148903 42 1.91e-05 GCCCAGGGCC TGCTGGGA GTCGTAGTTC chr19:49422154-49422234 56 1.91e-05 CCCAAAGGAC TGCTGGGA GTTGAAGTTG chr19:2819763-2819843 62 1.91e-05 CTGCGGGGCC TGCTGGGA CTTGTAGTTC chr19:50000606-50000686 73 1.91e-05 CTTCTGGGGC TGCTGGGA chr19:48866438-48866518 62 1.91e-05 CCGCGAAGCC TGCTGGGA GCCGTAGTCC chr12:88535976-88536056 50 1.91e-05 GGCTTCTGCA TGCTGGGA ACTGAAGTCC chr19:54682364-54682444 65 1.91e-05 CCCTGGGGCC TGCTGGGA GATGTAGT chr8:67525734-67525814 45 1.91e-05 GCGCGGGGCC TGCTGGGA GAGCGAGTTC chr6:43215022-43215102 59 1.91e-05 CTGCTCGGCC TGCTGGGA GTTGTAGTCT chr19:49479597-49479677 60 1.91e-05 CAGCAGGGGC TGCTGGGA GTTGTAGTTT chr17:40559661-40559741 65 1.91e-05 GCACAGGGCA TGCTGGGA CTTGTAGT chr19:7616353-7616433 57 1.91e-05 TCCTGAGGGA TGCTGGGA AATGGAGTTC chr17:7094938-7095018 64 1.91e-05 CCCCAGGGGC TGCTGGGA AATGTAGTC chr8:99129420-99129500 39 2.83e-05 TCGTGCGGCA TTCTGGGA ACTGTAGTTT chr2:219135114-219135194 31 2.83e-05 CTCTGCGGGC TTCTGGGA GATGTAGTTT chr19:46366538-46366618 32 2.83e-05 CGGCTAGGCC TTCTGGGA AATGTAGTCC chr19:44617436-44617516 34 2.83e-05 TCCCAGGGAA TTCTGGGA AGTGTAGTCC chr17:38083873-38083953 37 2.83e-05 GCCCGACGCC TTCTGGGA GTTGTAGTTT chr19:49310028-49310108 66 2.83e-05 CCCTGGAGGA TTCTGGGA CATGCAG chr19:44598428-44598508 57 2.83e-05 TCCCGGGGAA TTCTGGGA AGTGGAGTCC chr11:64578098-64578178 57 2.83e-05 GCGCTGTGGC TTCTGGGA TCTCTAGGTC chr7:150689947-150690027 68 2.83e-05 CCCACCTGCA TTCTGGGA ACTGT chr17:73285614-73285694 69 4.72e-05 GCGCACAGCT TCCTGGGA GATG chr16:30786739-30786819 22 4.72e-05 TCGGGCTGCA TCCTGGGA AGTGTAGTTC chr8:145159787-145159867 54 4.72e-05 GCGCGCTGCC TCCTGGGA TTTGTAGTTC chr2:54950526-54950606 17 4.72e-05 GCGCGCGGAA TCCTGGGA CTTGTGGTCC chr17:4634598-4634678 66 4.72e-05 GCGCTGAGCA TCCTGGGA ATCGTAG chr6:110501304-110501384 49 8.64e-05 CCGCGCTGCA CGCTGGGA GTGCAGGACC chr18:60382219-60382299 55 8.64e-05 ACCAAAGGAC CGCTGGGA CTTGTAGTCC chr5:178157704-178157784 31 8.64e-05 CCGCTGAGGC CGCTGGGA AATGGAGTCC chr18:77439446-77439526 60 8.64e-05 CTGCGTTGAA CGCTGGGA CTCGTAGTCC chr3:50388516-50388596 58 8.64e-05 GCGTGGTACA CGCTGGGA TTTGTAGTCT chr19:49947063-49947143 65 8.64e-05 CTCCGAGGGC CGCTGGGA GATGTAGT chr9:104160995-104161075 5 8.64e-05 TGCA CGCTGGGA AATGTAGTCC chr17:76250660-76250740 66 8.64e-05 CCCCGTGGCA CGCTGGGA GTTGTAG chr16:15150045-15150125 61 8.64e-05 CCGCAAGGGG CGCTGGGA AGTGTAGTCC chr16:58718644-58718724 58 8.64e-05 CCGCGGGACA CGCTGGGA GTTGTAGTTT chr5:95309853-95309933 65 1.45e-04 GAGTGTCAGT TGGTGGGA ACCAGCTG chr9:15422690-15422770 48 1.45e-04 GCCCATGGCC TGCCGGGA AATGTAGTTT chr18:9913577-9913657 66 1.45e-04 GCAGGGGGCA TGCCGGGA GTTGTAG chr17:7760556-7760636 65 1.45e-04 GCCCAGAGGC TGCCGGGA GCTGCAGT chr15:75182334-75182414 36 1.45e-04 CCGCGGGGGC TGCCGGGA AAGGCATACG chr19:1241652-1241732 48 1.45e-04 GCGTGCGCCC TGCCGGGA GTCGTAGTTC chr1:156052266-156052346 60 1.45e-04 gcccggggcA TGCCGGGA GTTGTAGTTT chr12:110151349-11015142 29 1.45e-04 GCGCGCAGCA TGCCGGGA GTTGCAGTCC chr9:138853260-138853340 3 1.45e-04 CA TGCCGGGA GATGTGGTTC chr1:17338445-17338525 51 1.45e-04 GCGCCGGGGC TGCCGGGA CTTGTAGTCC chr19:49385142-49385222 65 1.83e-04 GCTCAAGTGA TGATGGGA GATGTAGT chr10:103892683-10389276 30 1.83e-04 CCGCACGGCT CTCTGGGA TTCGTAGTCT chr1:185126325-185126405 51 1.83e-04 TGTGTGTGTG TGTTGGGA GGCGGGGGTC chr11:66138863-66138943 65 1.83e-04 GGGAGTCGGC TGATGGGA ATTGTAGT chr11:64014984-64015064 31 2.11e-04 AGGCTCGGGC TTGTGGGA AACGGAGTCC chr3:98241868-98241948 70 2.11e-04 GCGCGGCGCA TTGTGGGA GAT chr4:2420549-2420629 72 2.11e-04 GCGCTGTGTA TTGTGGGA G chr19:42463548-42463628 41 2.11e-04 CCGCCGAGTA TTGTGGGA GTTGTAGTCC chr19:58708528-58708608 45 2.20e-04 GAACACAGCA TTTTGGGA ACCCCTTCAG chr4:152682126-152682206 61 2.58e-04 CCGCGAGGCT CCCTGGGA AGCGTAGTTC chr10:104262567-10426264 67 2.58e-04 ATGCGCAGTA CCCTGGGA TTTGTG chr14:24701755-24701835 62 2.58e-04 GCCCGTTTCC CCCTGGGA GTTGTAGTCT chr19:36208415-36208495 54 2.58e-04 GCCCGCGGCA CCCTGGGA GTGGTAGTCC chr11:134123326-13412340 41 3.16e-04 TTGTTAGGGC TCGTGGGA GGACTACAAC chr3:69788469-69788549 14 3.16e-04 GCTGTAGTTT TCGTGGGA GCGGCTCCCC chr9:131965182-131965262 59 3.35e-04 CCGCACAGCA TCATGGGA GTTGTAGTTC chr19:55816992-55817072 67 3.35e-04 CTCCTGGGGC TCATGGGA TTTGTA chr12:57146162-57146242 55 4.74e-04 CCGCCGGGGC CGCCGGGA ATTGTAGTTC chr1:27930658-27930738 61 4.74e-04 GCGCGCGGCA CGCCGGGA CTTGTAGTcc chr19:42746822-42746902 22 4.74e-04 CCGCGTGGCA CGCCGGGA AATGAAGTCC chr17:76374669-76374749 45 4.74e-04 AGTTCGCGCC CGCCGGGA GCGGAAGCGG chr19:58838294-58838374 55 4.74e-04 TTCCGGAGGA CGCCGGGA ATTGTAGTCC chr8:144699758-144699838 37 4.74e-04 TCCCGGGCAC AGCTGGGA CTTGGAGTCC chr19:489029-489109 50 5.52e-04 CTCCGCGGCA TGGCGGGA GTTGTGGTTC chr19:10812065-10812145 73 5.52e-04 ACAGTCAAGA TGGCGGGA chr7:100254002-100254082 10 5.52e-04 CGTGGGCGG TGGCGGGA TCAGCACCGA chr18:580342-580422 37 5.52e-04 GGGGCGGTGC CGTTGGGA CCACGGCGGC chr16:46918129-46918209 12 6.58e-04 GCGCGGGGCG CTGTGGGA CTTGTAGTTC chr4:2538128-2538208 14 6.58e-04 TCGCAAGGCC TGACGGGA ATCGTGGTCC chr12:101673891-10167397 62 6.58e-04 AAGTCTGGGC ATCTGGGA ATCGGAGAGT chr19:52097733-52097813 34 7.14e-04 GCCGCAAGTG TTTCGGGA CGACGCAACG chr16:30908461-30908541 51 7.14e-04 GCGCTGTGCG TTTCGGGA AATGGAGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:163148823-163148903 1.9e-05 41_[+4]_31 chr19:49422154-49422234 1.9e-05 55_[+4]_17 chr19:2819763-2819843 1.9e-05 61_[+4]_11 chr19:50000606-50000686 1.9e-05 72_[+4] chr19:48866438-48866518 1.9e-05 61_[+4]_11 chr12:88535976-88536056 1.9e-05 49_[+4]_23 chr19:54682364-54682444 1.9e-05 64_[+4]_8 chr8:67525734-67525814 1.9e-05 44_[+4]_28 chr6:43215022-43215102 1.9e-05 58_[+4]_14 chr19:49479597-49479677 1.9e-05 59_[+4]_13 chr17:40559661-40559741 1.9e-05 64_[+4]_8 chr19:7616353-7616433 1.9e-05 56_[+4]_16 chr17:7094938-7095018 1.9e-05 63_[+4]_9 chr8:99129420-99129500 2.8e-05 38_[+4]_34 chr2:219135114-219135194 2.8e-05 30_[+4]_42 chr19:46366538-46366618 2.8e-05 31_[+4]_41 chr19:44617436-44617516 2.8e-05 33_[+4]_39 chr17:38083873-38083953 2.8e-05 36_[+4]_36 chr19:49310028-49310108 2.8e-05 65_[+4]_7 chr19:44598428-44598508 2.8e-05 56_[+4]_16 chr11:64578098-64578178 2.8e-05 56_[+4]_16 chr7:150689947-150690027 2.8e-05 67_[+4]_5 chr17:73285614-73285694 4.7e-05 68_[+4]_4 chr16:30786739-30786819 4.7e-05 21_[+4]_51 chr8:145159787-145159867 4.7e-05 53_[+4]_19 chr2:54950526-54950606 4.7e-05 16_[+4]_56 chr17:4634598-4634678 4.7e-05 65_[+4]_7 chr6:110501304-110501384 8.6e-05 48_[+4]_24 chr18:60382219-60382299 8.6e-05 54_[+4]_18 chr5:178157704-178157784 8.6e-05 30_[+4]_42 chr18:77439446-77439526 8.6e-05 59_[+4]_13 chr3:50388516-50388596 8.6e-05 57_[+4]_15 chr19:49947063-49947143 8.6e-05 64_[+4]_8 chr9:104160995-104161075 8.6e-05 4_[+4]_68 chr17:76250660-76250740 8.6e-05 65_[+4]_7 chr16:15150045-15150125 8.6e-05 60_[+4]_12 chr16:58718644-58718724 8.6e-05 57_[+4]_15 chr5:95309853-95309933 0.00014 64_[+4]_8 chr9:15422690-15422770 0.00014 47_[+4]_25 chr18:9913577-9913657 0.00014 65_[+4]_7 chr17:7760556-7760636 0.00014 64_[+4]_8 chr15:75182334-75182414 0.00014 35_[+4]_37 chr19:1241652-1241732 0.00014 47_[+4]_25 chr1:156052266-156052346 0.00014 59_[+4]_13 chr12:110151349-11015142 0.00014 28_[+4]_44 chr9:138853260-138853340 0.00014 2_[+4]_70 chr1:17338445-17338525 0.00014 50_[+4]_22 chr19:49385142-49385222 0.00018 64_[+4]_8 chr10:103892683-10389276 0.00018 29_[+4]_43 chr1:185126325-185126405 0.00018 50_[+4]_22 chr11:66138863-66138943 0.00018 64_[+4]_8 chr11:64014984-64015064 0.00021 30_[+4]_42 chr3:98241868-98241948 0.00021 69_[+4]_3 chr4:2420549-2420629 0.00021 71_[+4]_1 chr19:42463548-42463628 0.00021 40_[+4]_32 chr19:58708528-58708608 0.00022 44_[+4]_28 chr4:152682126-152682206 0.00026 60_[+4]_12 chr10:104262567-10426264 0.00026 66_[+4]_6 chr14:24701755-24701835 0.00026 61_[+4]_11 chr19:36208415-36208495 0.00026 53_[+4]_19 chr11:134123326-13412340 0.00032 40_[+4]_32 chr3:69788469-69788549 0.00032 13_[+4]_59 chr9:131965182-131965262 0.00033 58_[+4]_14 chr19:55816992-55817072 0.00033 66_[+4]_6 chr12:57146162-57146242 0.00047 54_[+4]_18 chr1:27930658-27930738 0.00047 60_[+4]_12 chr19:42746822-42746902 0.00047 21_[+4]_51 chr17:76374669-76374749 0.00047 44_[+4]_28 chr19:58838294-58838374 0.00047 54_[+4]_18 chr8:144699758-144699838 0.00047 36_[+4]_36 chr19:489029-489109 0.00055 49_[+4]_23 chr19:10812065-10812145 0.00055 72_[+4] chr7:100254002-100254082 0.00055 9_[+4]_63 chr18:580342-580422 0.00055 36_[+4]_36 chr16:46918129-46918209 0.00066 11_[+4]_61 chr4:2538128-2538208 0.00066 13_[+4]_59 chr12:101673891-10167397 0.00066 61_[+4]_11 chr19:52097733-52097813 0.00071 33_[+4]_39 chr16:30908461-30908541 0.00071 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGGGA width=8 seqs=79 chr6:163148823-163148903 ( 42) TGCTGGGA 1 chr19:49422154-49422234 ( 56) TGCTGGGA 1 chr19:2819763-2819843 ( 62) TGCTGGGA 1 chr19:50000606-50000686 ( 73) TGCTGGGA 1 chr19:48866438-48866518 ( 62) TGCTGGGA 1 chr12:88535976-88536056 ( 50) TGCTGGGA 1 chr19:54682364-54682444 ( 65) TGCTGGGA 1 chr8:67525734-67525814 ( 45) TGCTGGGA 1 chr6:43215022-43215102 ( 59) TGCTGGGA 1 chr19:49479597-49479677 ( 60) TGCTGGGA 1 chr17:40559661-40559741 ( 65) TGCTGGGA 1 chr19:7616353-7616433 ( 57) TGCTGGGA 1 chr17:7094938-7095018 ( 64) TGCTGGGA 1 chr8:99129420-99129500 ( 39) TTCTGGGA 1 chr2:219135114-219135194 ( 31) TTCTGGGA 1 chr19:46366538-46366618 ( 32) TTCTGGGA 1 chr19:44617436-44617516 ( 34) TTCTGGGA 1 chr17:38083873-38083953 ( 37) TTCTGGGA 1 chr19:49310028-49310108 ( 66) TTCTGGGA 1 chr19:44598428-44598508 ( 57) TTCTGGGA 1 chr11:64578098-64578178 ( 57) TTCTGGGA 1 chr7:150689947-150690027 ( 68) TTCTGGGA 1 chr17:73285614-73285694 ( 69) TCCTGGGA 1 chr16:30786739-30786819 ( 22) TCCTGGGA 1 chr8:145159787-145159867 ( 54) TCCTGGGA 1 chr2:54950526-54950606 ( 17) TCCTGGGA 1 chr17:4634598-4634678 ( 66) TCCTGGGA 1 chr6:110501304-110501384 ( 49) CGCTGGGA 1 chr18:60382219-60382299 ( 55) CGCTGGGA 1 chr5:178157704-178157784 ( 31) CGCTGGGA 1 chr18:77439446-77439526 ( 60) CGCTGGGA 1 chr3:50388516-50388596 ( 58) CGCTGGGA 1 chr19:49947063-49947143 ( 65) CGCTGGGA 1 chr9:104160995-104161075 ( 5) CGCTGGGA 1 chr17:76250660-76250740 ( 66) CGCTGGGA 1 chr16:15150045-15150125 ( 61) CGCTGGGA 1 chr16:58718644-58718724 ( 58) CGCTGGGA 1 chr5:95309853-95309933 ( 65) TGGTGGGA 1 chr9:15422690-15422770 ( 48) TGCCGGGA 1 chr18:9913577-9913657 ( 66) TGCCGGGA 1 chr17:7760556-7760636 ( 65) TGCCGGGA 1 chr15:75182334-75182414 ( 36) TGCCGGGA 1 chr19:1241652-1241732 ( 48) TGCCGGGA 1 chr1:156052266-156052346 ( 60) TGCCGGGA 1 chr12:110151349-11015142 ( 29) TGCCGGGA 1 chr9:138853260-138853340 ( 3) TGCCGGGA 1 chr1:17338445-17338525 ( 51) TGCCGGGA 1 chr19:49385142-49385222 ( 65) TGATGGGA 1 chr10:103892683-10389276 ( 30) CTCTGGGA 1 chr1:185126325-185126405 ( 51) TGTTGGGA 1 chr11:66138863-66138943 ( 65) TGATGGGA 1 chr11:64014984-64015064 ( 31) TTGTGGGA 1 chr3:98241868-98241948 ( 70) TTGTGGGA 1 chr4:2420549-2420629 ( 72) TTGTGGGA 1 chr19:42463548-42463628 ( 41) TTGTGGGA 1 chr19:58708528-58708608 ( 45) TTTTGGGA 1 chr4:152682126-152682206 ( 61) CCCTGGGA 1 chr10:104262567-10426264 ( 67) CCCTGGGA 1 chr14:24701755-24701835 ( 62) CCCTGGGA 1 chr19:36208415-36208495 ( 54) CCCTGGGA 1 chr11:134123326-13412340 ( 41) TCGTGGGA 1 chr3:69788469-69788549 ( 14) TCGTGGGA 1 chr9:131965182-131965262 ( 59) TCATGGGA 1 chr19:55816992-55817072 ( 67) TCATGGGA 1 chr12:57146162-57146242 ( 55) CGCCGGGA 1 chr1:27930658-27930738 ( 61) CGCCGGGA 1 chr19:42746822-42746902 ( 22) CGCCGGGA 1 chr17:76374669-76374749 ( 45) CGCCGGGA 1 chr19:58838294-58838374 ( 55) CGCCGGGA 1 chr8:144699758-144699838 ( 37) AGCTGGGA 1 chr19:489029-489109 ( 50) TGGCGGGA 1 chr19:10812065-10812145 ( 73) TGGCGGGA 1 chr7:100254002-100254082 ( 10) TGGCGGGA 1 chr18:580342-580422 ( 37) CGTTGGGA 1 chr16:46918129-46918209 ( 12) CTGTGGGA 1 chr4:2538128-2538208 ( 14) TGACGGGA 1 chr12:101673891-10167397 ( 62) ATCTGGGA 1 chr19:52097733-52097813 ( 34) TTTCGGGA 1 chr16:30908461-30908541 ( 51) TTTCGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 1.4e-029 -271 -26 -1295 209 -1295 -102 82 56 -139 114 -128 -137 -1295 -40 -1295 219 -1295 -1295 157 -1295 -1295 -1295 157 -1295 -1295 -1295 157 -1295 260 -1295 -1295 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 1.4e-029 0.025316 0.278481 0.000000 0.696203 0.000000 0.164557 0.594937 0.240506 0.063291 0.734177 0.139241 0.063291 0.000000 0.253165 0.000000 0.746835 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGGA MEME-4 regular expression -------------------------------------------------------------------------------- [TC][GT]C[TC]GGGA -------------------------------------------------------------------------------- Time 15.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TCASGTGA MEME-5 width = 8 sites = 10 llr = 104 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a12::a pos.-specific C :a:6:::: probability G :::38:a: matrix T a::::a:: bits 2.6 * * * * 2.4 * * * * 2.1 * * * * 1.8 * * * * Relative 1.6 *** *** Entropy 1.3 *** *** (15.0 bits) 1.0 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel TCACGTGA consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:10812065-10812145 4 9.22e-06 TGG TCACGTGA CAGCGGCCAA chr16:2097852-2097932 19 9.22e-06 TGCGGCCCCG TCACGTGA TGCAAGGATC chr16:88923517-88923597 6 9.22e-06 GCGGG TCACGTGA CGCGGTGCCT chr3:158519814-158519894 13 9.22e-06 TGCCGGGGCG TCACGTGA GCTCCCGGAG chr4:152682126-152682206 28 2.30e-05 AGGGTCTTGG TCAGGTGA CTCAGCCTCA chr11:36310964-36311044 9 2.30e-05 TGCCGAAG TCACATGA CCGTGGCACC chr17:74733997-74734077 58 2.30e-05 GCGGCTGCGG TCAGGTGA CCCGGTCGCC chr17:3539931-3540011 68 2.30e-05 GTGGCGGAGG TCAGGTGA CAGCG chr16:58718644-58718724 25 2.30e-05 TGAGCATGCA TCACATGA CGCCCGCTCG chr19:49385142-49385222 57 2.76e-05 AGAAAAACGC TCAAGTGA TGATGGGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:10812065-10812145 9.2e-06 3_[+5]_69 chr16:2097852-2097932 9.2e-06 18_[+5]_54 chr16:88923517-88923597 9.2e-06 5_[+5]_67 chr3:158519814-158519894 9.2e-06 12_[+5]_60 chr4:152682126-152682206 2.3e-05 27_[+5]_45 chr11:36310964-36311044 2.3e-05 8_[+5]_64 chr17:74733997-74734077 2.3e-05 57_[+5]_15 chr17:3539931-3540011 2.3e-05 67_[+5]_5 chr16:58718644-58718724 2.3e-05 24_[+5]_48 chr19:49385142-49385222 2.8e-05 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCASGTGA width=8 seqs=10 chr19:10812065-10812145 ( 4) TCACGTGA 1 chr16:2097852-2097932 ( 19) TCACGTGA 1 chr16:88923517-88923597 ( 6) TCACGTGA 1 chr3:158519814-158519894 ( 13) TCACGTGA 1 chr4:152682126-152682206 ( 28) TCAGGTGA 1 chr11:36310964-36311044 ( 9) TCACATGA 1 chr17:74733997-74734077 ( 58) TCAGGTGA 1 chr17:3539931-3540011 ( 68) TCAGGTGA 1 chr16:58718644-58718724 ( 25) TCACATGA 1 chr19:49385142-49385222 ( 57) TCAAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 5.6e+003 -997 -997 -997 261 -997 158 -997 -997 259 -997 -997 -997 -73 85 -17 -997 27 -997 124 -997 -997 -997 -997 261 -997 -997 156 -997 259 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.600000 0.300000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASGTGA MEME-5 regular expression -------------------------------------------------------------------------------- TCA[CG][GA]TGA -------------------------------------------------------------------------------- Time 18.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:142506583-142506663 4.91e-02 80 chr12:131714698-13171477 3.73e-01 80 chr17:19912579-19912659 9.52e-03 2_[+2(9.30e-05)]_1_[+3(8.50e-05)]_\ 61 chr11:3663395-3663475 4.96e-01 80 chr19:55816992-55817072 1.75e-06 1_[+2(2.22e-06)]_1_[+3(1.87e-05)]_\ 62 chr9:97021490-97021570 5.69e-02 3_[+1(6.61e-06)]_56_[+1(6.09e-05)]_\ 5 chr18:580342-580422 2.23e-01 80 chr2:220150936-220151016 8.52e-01 80 chr17:7094938-7095018 2.18e-06 63_[+4(1.91e-05)]_1_[+1(1.33e-05)] chr19:7616353-7616433 1.13e-03 3_[+1(1.33e-05)]_14_[+4(1.91e-05)]_\ 23_[+4(1.91e-05)]_1_[+1(4.53e-05)]_7 chr17:40559661-40559741 3.55e-06 22_[+2(2.25e-05)]_1_[+3(1.87e-05)]_\ 25_[+4(1.91e-05)]_8 chr1:47799876-47799956 4.30e-02 13_[+2(6.73e-05)]_59 chr1:230562413-230562493 2.12e-01 80 chr15:63481572-63481652 4.45e-06 27_[+2(2.22e-06)]_45 chr3:20083092-20083172 9.06e-01 80 chr16:30908461-30908541 5.85e-05 11_[+2(1.35e-05)]_40_[+1(7.48e-05)]_\ 13 chr9:131965182-131965262 4.62e-04 67_[+1(2.17e-06)]_5 chr5:81267834-81267914 9.77e-01 80 chr1:17338445-17338525 2.03e-03 59_[+1(6.61e-06)]_13 chr19:49479597-49479677 1.53e-06 4_[+3(4.68e-05)]_47_[+4(1.91e-05)]_\ 1_[+1(2.17e-06)]_4 chr15:41099752-41099832 7.55e-04 38_[+2(3.64e-05)]_1_[+3(1.87e-05)]_\ 25 chr19:48103714-48103794 1.19e-01 65_[+1(7.48e-05)]_7 chr1:156308535-156308615 6.22e-03 38_[+1(6.61e-06)]_34 chr19:58708528-58708608 2.41e-03 3_[+3(4.68e-05)]_69 chr12:64798060-64798140 6.38e-04 63_[+4(1.91e-05)]_9 chr19:507885-507965 3.33e-05 7_[+3(1.87e-05)]_49_[+4(1.91e-05)]_\ 8 chr6:43215022-43215102 2.97e-06 58_[+4(1.91e-05)]_1_[+1(6.61e-06)]_\ 5 chr15:79165112-79165192 3.36e-01 80 chr7:150780592-150780672 2.92e-02 48_[+1(6.61e-06)]_24 chr19:55815803-55815883 7.20e-03 65_[+4(4.72e-05)]_7 chr12:104323502-10432358 3.12e-02 32_[+2(6.73e-05)]_40 chr4:146101754-146101834 4.40e-01 80 chr16:58664401-58664481 3.16e-02 80 chr12:12966213-12966293 1.67e-04 30_[+2(8.98e-06)]_1_[+3(1.87e-05)]_\ 33 chr8:67525734-67525814 1.79e-02 44_[+4(1.91e-05)]_28 chr9:138853260-138853340 4.44e-03 80 chr12:72332624-72332704 8.80e-01 80 chr7:143078240-143078320 4.13e-01 80 chr19:54682364-54682444 7.53e-04 64_[+4(1.91e-05)]_8 chr20:25677523-25677603 1.76e-01 80 chr16:58718644-58718724 1.50e-06 24_[+5(2.30e-05)]_25_[+4(8.64e-05)]_\ 1_[+1(2.17e-06)]_6 chr17:3539931-3540011 3.66e-06 7_[+2(2.22e-06)]_52_[+5(2.30e-05)]_\ 5 chr19:36208415-36208495 4.01e-05 62_[+1(4.53e-05)]_10 chr2:232646288-232646368 7.04e-04 10_[+2(1.35e-05)]_1_[+3(1.87e-05)]_\ 29_[+3(8.50e-05)]_16 chr19:42463548-42463628 1.29e-03 19_[+1(6.09e-05)]_22_[+1(6.61e-06)]_\ 23 chr9:115913176-115913256 3.00e-03 80 chr14:24701755-24701835 1.60e-06 17_[+2(8.98e-06)]_45_[+1(6.61e-06)]_\ 2 chr16:4321906-4321986 1.03e-02 8_[+2(1.80e-05)]_64 chr6:37611845-37611925 9.63e-01 80 chr21:33765254-33765334 5.59e-01 80 chr7:150689947-150690027 6.80e-05 1_[+2(2.22e-06)]_58_[+4(2.83e-05)]_\ 5 chr15:38544445-38544525 9.98e-01 80 chr18:712482-712562 3.83e-01 80 chr17:25783352-25783432 5.47e-04 41_[+2(6.78e-06)]_1_[+3(1.87e-05)]_\ 22 chr12:110151349-11015142 2.98e-02 80 chr1:151584410-151584490 7.26e-04 46_[+2(8.98e-06)]_1_[+3(3.76e-05)]_\ 17 chr1:156052266-156052346 1.38e-04 68_[+1(2.17e-06)]_4 chr8:145560358-145560438 9.46e-01 80 chr11:107436406-10743648 3.27e-03 56_[+2(9.30e-05)]_16 chr19:16482464-16482544 4.37e-01 80 chr11:64578098-64578178 1.64e-01 56_[+4(2.83e-05)]_16 chr12:88535976-88536056 2.74e-05 49_[+4(1.91e-05)]_23 chr19:49148181-49148261 1.57e-06 1_[+2(2.22e-06)]_1_[+3(1.87e-05)]_\ 62 chr17:74733997-74734077 1.42e-05 21_[+3(8.50e-05)]_28_[+5(2.30e-05)]_\ 15 chr19:50163147-50163227 2.72e-03 19_[+2(6.78e-06)]_53 chr1:244816071-244816151 7.58e-03 32_[+1(6.61e-06)]_40 chr19:44598428-44598508 4.11e-04 56_[+4(2.83e-05)]_16 chr19:45988700-45988780 1.01e-04 13_[+2(2.22e-06)]_1_[+3(1.87e-05)]_\ 50 chr16:67700640-67700720 3.78e-01 80 chr19:44809196-44809276 2.37e-03 9_[+3(4.68e-05)]_38_[+2(3.64e-05)]_\ 1_[+3(4.68e-05)]_8 chr1:156251186-156251266 7.70e-01 80 chr16:15150045-15150125 1.44e-02 60_[+4(8.64e-05)]_12 chr3:67048505-67048585 2.50e-01 80 chr8:144699758-144699838 3.17e-03 2_[+1(7.48e-05)]_35_[+1(3.15e-05)]_\ 27 chr19:38397739-38397819 1.10e-01 80 chr19:48866438-48866518 1.46e-04 3_[+3(3.76e-05)]_50_[+4(1.91e-05)]_\ 11 chr17:76250660-76250740 8.02e-04 4_[+1(2.17e-06)]_53_[+4(8.64e-05)]_\ 7 chr11:64456010-64456090 9.35e-01 80 chr17:4634598-4634678 2.36e-04 20_[+1(2.17e-06)]_37_[+4(4.72e-05)]_\ 7 chr2:202316259-202316339 1.91e-01 53_[+3(8.50e-05)]_19 chr20:47805026-47805106 2.63e-01 80 chr17:7338633-7338713 4.47e-01 80 chr17:1933388-1933468 1.21e-01 80 chr6:26521438-26521518 4.53e-01 80 chr12:101673891-10167397 3.19e-02 80 chr10:111985599-11198567 4.86e-03 64_[+2(1.35e-05)]_8 chr16:4817231-4817311 2.73e-01 80 chr2:54950526-54950606 5.03e-05 16_[+4(4.72e-05)]_1_[+1(8.84e-05)]_\ 37_[+2(5.34e-05)]_2 chr3:32147927-32148007 7.18e-01 80 chr4:2420549-2420629 6.59e-02 80 chr6:41703351-41703431 3.11e-01 80 chr17:7123150-7123230 1.14e-01 8_[+3(1.87e-05)]_64 chr4:2538128-2538208 8.75e-03 80 chr5:178286918-178286998 3.03e-02 80 chr8:124054111-124054191 1.07e-01 80 chr3:69788469-69788549 1.74e-05 4_[+1(6.09e-05)]_49_[+2(1.80e-05)]_\ 11 chr3:50397070-50397150 4.99e-08 8_[+2(2.22e-06)]_1_[+3(3.76e-05)]_\ 43_[+4(1.91e-05)]_4 chr22:39151607-39151687 5.75e-01 80 chr8:145159787-145159867 1.43e-05 53_[+4(4.72e-05)]_1_[+1(2.17e-06)]_\ 10 chr4:1857956-1858036 1.82e-01 80 chr1:155225299-155225379 3.14e-03 34_[+1(2.17e-06)]_38 chr11:134123326-13412340 2.07e-03 49_[+2(6.78e-06)]_23 chr19:1241652-1241732 1.69e-03 80 chr7:100254002-100254082 4.22e-02 80 chr8:143484601-143484681 2.27e-01 80 chr2:27255756-27255836 7.00e-01 80 chr9:104160995-104161075 2.37e-04 4_[+4(8.64e-05)]_1_[+1(1.33e-05)]_\ 59 chr6:157801080-157801160 9.83e-03 30_[+1(2.17e-06)]_42 chr19:49248608-49248688 5.68e-06 1_[+2(2.22e-06)]_58_[+4(2.83e-05)]_\ 5 chr19:52097733-52097813 3.14e-02 80 chr19:49310028-49310108 5.05e-04 65_[+4(2.83e-05)]_7 chr17:38083873-38083953 3.79e-04 36_[+4(2.83e-05)]_1_[+1(2.17e-06)]_\ 27 chr16:88866497-88866577 1.87e-01 51_[+1(5.19e-05)]_21 chr3:183892483-183892563 1.30e-02 33_[+1(2.17e-06)]_39 chr8:143808510-143808590 2.03e-01 80 chr5:1345127-1345207 7.14e-01 80 chr16:19535092-19535172 3.81e-01 80 chr1:156542324-156542404 9.57e-01 80 chr10:44144318-44144398 3.50e-04 5_[+2(6.78e-06)]_1_[+3(3.76e-05)]_\ 58 chr17:38673161-38673241 9.26e-01 80 chr2:217277068-217277148 4.62e-04 20_[+2(2.22e-06)]_1_[+3(4.68e-05)]_\ 43 chr14:73493957-73494037 2.46e-03 31_[+2(6.78e-06)]_41 chr20:30865382-30865462 8.44e-01 80 chr19:49947063-49947143 1.75e-03 7_[+3(8.50e-05)]_49_[+4(8.64e-05)]_\ 8 chr1:247095509-247095589 8.44e-03 [+2(6.73e-05)]_72 chr9:130700104-130700184 5.97e-01 80 chr15:75182334-75182414 1.89e-01 80 chr12:861520-861600 5.72e-04 1_[+2(2.22e-06)]_71 chr19:58838294-58838374 1.19e-08 1_[+2(2.22e-06)]_1_[+3(1.87e-05)]_\ 45_[+1(6.61e-06)]_9 chr16:46918129-46918209 6.67e-06 20_[+1(2.17e-06)]_38_[+2(1.80e-05)]_\ 6 chr3:50388516-50388596 9.88e-04 57_[+4(8.64e-05)]_1_[+1(6.61e-06)]_\ 6 chr20:62694379-62694459 4.12e-05 11_[+2(5.34e-05)]_1_[+3(3.76e-05)]_\ 29_[+1(8.84e-05)]_15 chr11:66138863-66138943 7.30e-05 18_[+2(6.78e-06)]_54 chr20:3026608-3026688 5.80e-03 23_[+2(3.64e-05)]_49 chr5:168006634-168006714 1.22e-03 51_[+1(2.17e-06)]_21 chr1:36839536-36839616 6.42e-01 80 chr16:11038300-11038380 4.48e-03 53_[+3(8.50e-05)]_19 chr17:7760556-7760636 1.54e-03 80 chr9:131038568-131038648 4.92e-01 80 chr18:77439446-77439526 5.40e-03 59_[+4(8.64e-05)]_13 chr15:41523435-41523515 8.70e-01 80 chr18:9913577-9913657 4.69e-02 80 chr2:197504239-197504319 6.04e-01 80 chr19:50000606-50000686 2.73e-02 72_[+4(1.91e-05)] chr5:55008161-55008241 9.23e-03 24_[+1(1.78e-05)]_48 chr5:137801204-137801284 9.94e-01 80 chr7:100888005-100888085 2.33e-04 40_[+2(4.42e-05)]_1_[+3(3.76e-05)]_\ 23 chr2:99952917-99952997 6.75e-01 80 chr19:57946554-57946634 1.53e-02 40_[+2(8.98e-06)]_32 chr19:44617436-44617516 4.01e-05 33_[+4(2.83e-05)]_39 chr3:14166366-14166446 1.18e-03 [+2(8.98e-06)]_1_[+3(1.87e-05)]_36_\ [+2(8.98e-06)]_19 chr20:62284650-62284730 8.14e-01 80 chr19:48922679-48922759 8.52e-03 2_[+3(1.87e-05)]_70 chr3:98241868-98241948 1.59e-01 80 chr1:16380749-16380829 8.05e-01 80 chr17:36908096-36908176 5.83e-01 80 chr5:74807710-74807790 1.17e-02 3_[+1(6.61e-06)]_69 chr19:51142540-51142620 2.20e-03 17_[+2(6.78e-06)]_55 chr10:104262567-10426264 2.79e-02 80 chr9:95527247-95527327 4.35e-01 80 chr19:2819763-2819843 1.34e-04 61_[+4(1.91e-05)]_1_[+1(2.17e-06)]_\ 2 chr19:49422154-49422234 2.82e-05 26_[+3(3.76e-05)]_21_[+4(1.91e-05)]_\ 1_[+1(5.19e-05)]_8 chr16:1381849-1381929 2.15e-01 80 chr19:55831275-55831355 8.54e-07 1_[+2(4.42e-05)]_1_[+3(3.76e-05)]_\ 51_[+4(1.91e-05)]_3 chr16:30103262-30103342 3.44e-04 63_[+4(8.64e-05)]_9 chr2:44001113-44001193 4.67e-02 80 chr3:46037335-46037415 3.77e-03 57_[+2(6.78e-06)]_15 chr3:158519814-158519894 2.12e-03 12_[+5(9.22e-06)]_10_[+5(3.89e-05)]_\ 42 chr1:185126325-185126405 7.86e-05 [+2(7.18e-05)]_1_[+3(1.87e-05)]_63 chr15:74284585-74284665 8.73e-01 80 chr19:49224372-49224452 2.14e-03 55_[+1(2.17e-06)]_17 chr16:88923517-88923597 8.57e-03 5_[+5(9.22e-06)]_67 chr8:67025588-67025668 1.95e-01 80 chr19:46366538-46366618 5.32e-04 31_[+4(2.83e-05)]_1_[+1(1.33e-05)]_\ 32 chr5:36152099-36152179 4.20e-04 20_[+2(6.73e-05)]_11_[+2(2.22e-06)]_\ 1_[+3(1.87e-05)]_24 chr13:26827969-26828049 3.11e-02 59_[+1(6.61e-06)]_13 chr19:59086712-59086792 1.42e-02 4_[+2(8.98e-06)]_68 chr9:101820297-101820377 6.70e-01 80 chr15:40650478-40650558 9.20e-01 80 chr12:67662583-67662663 1.85e-01 80 chr11:64014984-64015064 1.50e-02 80 chr16:30786739-30786819 2.05e-03 21_[+4(4.72e-05)]_1_[+1(6.09e-05)]_\ 42 chr8:144025149-144025229 4.86e-01 80 chr17:72667513-72667593 6.29e-01 80 chr9:128024012-128024092 7.91e-03 21_[+2(1.80e-05)]_51 chr16:31119639-31119719 1.92e-04 23_[+2(2.22e-06)]_1_[+3(3.76e-05)]_\ 40 chr9:15422690-15422770 1.84e-03 56_[+1(8.81e-06)]_16 chr1:2457666-2457746 1.32e-03 64_[+2(6.78e-06)]_8 chr12:122985540-12298562 1.84e-03 19_[+2(6.78e-06)]_53 chr20:45946123-45946203 2.78e-01 80 chr1:6673601-6673681 1.03e-01 32_[+1(3.15e-05)]_40 chr7:150755067-150755147 3.90e-02 45_[+2(6.78e-06)]_27 chr20:62289867-62289947 9.27e-04 21_[+2(1.80e-05)]_51 chr16:12009109-12009189 3.77e-01 80 chr6:163148823-163148903 1.61e-03 41_[+4(1.91e-05)]_31 chr10:103892683-10389276 1.56e-03 65_[+1(2.17e-06)]_7 chr19:49385142-49385222 3.61e-03 56_[+5(2.76e-05)]_16 chr22:22089872-22089952 6.82e-01 80 chr19:49013933-49014013 1.23e-06 [+2(6.78e-06)]_72 chr17:58217279-58217359 5.67e-01 80 chr5:178157704-178157784 5.61e-03 30_[+4(8.64e-05)]_1_[+1(7.48e-05)]_\ 33 chr19:7580895-7580975 4.81e-04 51_[+2(2.22e-06)]_1_[+3(1.87e-05)]_\ 12 chr16:2009438-2009518 2.71e-03 36_[+2(2.22e-06)]_36 chr16:5083871-5083951 3.40e-01 80 chr17:73285614-73285694 1.32e-03 20_[+1(1.33e-05)]_40_[+4(4.72e-05)]_\ 4 chr1:243419262-243419342 2.91e-03 12_[+2(6.78e-06)]_60 chr1:229761904-229761984 8.16e-01 80 chr17:76374669-76374749 3.28e-01 80 chr19:54606120-54606200 3.65e-02 80 chr19:6361476-6361556 6.31e-03 63_[+1(6.09e-05)]_9 chr16:2097852-2097932 5.03e-05 18_[+5(9.22e-06)]_39_[+2(2.22e-06)]_\ 7 chr8:90996363-90996443 2.75e-01 80 chr1:249167995-249168075 8.45e-01 80 chr19:10812065-10812145 6.03e-04 3_[+5(9.22e-06)]_69 chr7:100450155-100450235 5.61e-01 80 chr17:73780716-73780796 2.22e-02 42_[+1(8.84e-05)]_30 chr19:42746822-42746902 3.02e-02 80 chr19:489029-489109 1.04e-02 58_[+1(5.19e-05)]_14 chr21:46961681-46961761 5.13e-01 80 chr1:12290033-12290113 9.99e-01 80 chr16:70473190-70473270 2.01e-05 [+1(7.48e-05)]_38_[+2(1.35e-05)]_1_\ [+3(4.68e-05)]_17 chr2:219135114-219135194 1.89e-03 30_[+4(2.83e-05)]_1_[+1(8.81e-06)]_\ 33 chr19:15543599-15543679 1.00e+00 80 chr19:56904612-56904692 2.67e-02 59_[+1(1.33e-05)]_13 chr20:62587787-62587867 8.09e-02 23_[+2(6.78e-06)]_23_[+2(6.78e-06)]_\ 18 chr5:95309853-95309933 1.29e-01 80 chr6:43597084-43597164 2.33e-03 54_[+3(3.76e-05)]_18 chr1:27930658-27930738 9.54e-04 69_[+1(6.61e-06)]_3 chr12:57146162-57146242 3.35e-03 63_[+1(2.17e-06)]_9 chr8:99129420-99129500 1.81e-03 38_[+4(2.83e-05)]_1_[+1(6.09e-05)]_\ 25 chr15:57614447-57614527 1.08e-01 80 chr19:49250482-49250562 2.79e-03 6_[+2(6.78e-06)]_66 chr2:2617294-2617374 7.71e-03 25_[+2(2.22e-06)]_47 chr3:61235772-61235852 2.05e-02 41_[+3(3.76e-05)]_31 chr19:36239228-36239308 5.40e-04 59_[+2(2.25e-05)]_1_[+3(3.76e-05)]_\ 4 chr1:243418736-243418816 6.15e-04 50_[+2(3.64e-05)]_1_[+3(8.50e-05)]_\ 13 chr11:36310964-36311044 7.89e-03 8_[+5(2.30e-05)]_64 chr11:65625717-65625797 2.30e-02 24_[+1(7.48e-05)]_48 chr18:60382219-60382299 4.20e-04 54_[+4(8.64e-05)]_1_[+1(6.61e-06)]_\ 9 chr4:152682126-152682206 1.72e-05 27_[+5(2.30e-05)]_45 chr16:67875853-67875933 2.46e-04 57_[+1(6.61e-06)]_15 chr9:130478017-130478097 6.41e-01 80 chr9:139137401-139137481 9.92e-01 80 chr2:37193726-37193806 3.12e-01 80 chr12:125473557-12547363 6.81e-01 80 chr6:28908837-28908917 6.43e-01 80 chr11:46414234-46414314 8.12e-01 80 chr6:110501304-110501384 2.02e-03 2_[+2(2.25e-05)]_38_[+4(8.64e-05)]_\ 24 chr2:73298890-73298970 4.79e-02 67_[+1(6.09e-05)]_5 chr19:1905224-1905304 7.48e-02 50_[+1(6.61e-06)]_22 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************