******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/EGR1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:112297736-112297816 1.0000 80 chr2:240190906-240190986 1.0000 80 chr19:47538929-47539009 1.0000 80 chr19:47949426-47949506 1.0000 80 chr3:130476755-130476835 1.0000 80 chr12:105352347-10535242 1.0000 80 chr1:31380579-31380659 1.0000 80 chr19:3812565-3812645 1.0000 80 chr21:38823898-38823978 1.0000 80 chr22:19715111-19715191 1.0000 80 chr1:245627750-245627830 1.0000 80 chr12:57483731-57483811 1.0000 80 chr1:38022476-38022556 1.0000 80 chr20:54990373-54990453 1.0000 80 chr22:21792465-21792545 1.0000 80 chr9:132330434-132330514 1.0000 80 chr5:180021850-180021930 1.0000 80 chr5:2137181-2137261 1.0000 80 chr10:29086215-29086295 1.0000 80 chr2:26468104-26468184 1.0000 80 chr4:13658287-13658367 1.0000 80 chr6:80487814-80487894 1.0000 80 chr3:24535989-24536069 1.0000 80 chr2:47104816-47104896 1.0000 80 chr19:7985864-7985944 1.0000 80 chr17:7210804-7210884 1.0000 80 chr20:55004675-55004755 1.0000 80 chr12:53229840-53229920 1.0000 80 chr16:2186175-2186255 1.0000 80 chr20:46008614-46008694 1.0000 80 chr7:158768362-158768442 1.0000 80 chr19:19250445-19250525 1.0000 80 chr10:11755313-11755393 1.0000 80 chr16:85470459-85470539 1.0000 80 chr1:226831021-226831101 1.0000 80 chr3:12933588-12933668 1.0000 80 chr19:44174375-44174455 1.0000 80 chr17:47439812-47439892 1.0000 80 chr8:144799060-144799140 1.0000 80 chr8:22516304-22516384 1.0000 80 chr17:37213230-37213310 1.0000 80 chr8:96080040-96080120 1.0000 80 chr9:130698162-130698242 1.0000 80 chr12:117020598-11702067 1.0000 80 chr16:84964035-84964115 1.0000 80 chr1:93317949-93318029 1.0000 80 chr6:28949482-28949562 1.0000 80 chr10:11837491-11837571 1.0000 80 chr17:73266790-73266870 1.0000 80 chr17:6478741-6478821 1.0000 80 chr4:4675016-4675096 1.0000 80 chr7:562158-562238 1.0000 80 chr2:48834857-48834937 1.0000 80 chr12:6735935-6736015 1.0000 80 chr19:13229798-13229878 1.0000 80 chr15:99968008-99968088 1.0000 80 chr16:88701338-88701418 1.0000 80 chr2:65610156-65610236 1.0000 80 chr14:106938290-10693837 1.0000 80 chr19:51568141-51568221 1.0000 80 chr12:124997357-12499743 1.0000 80 chr1:225642696-225642776 1.0000 80 chr11:65784907-65784987 1.0000 80 chr1:9686705-9686785 1.0000 80 chr11:64983412-64983492 1.0000 80 chr13:113946514-11394659 1.0000 80 chr7:100813265-100813345 1.0000 80 chr9:66458540-66458620 1.0000 80 chr6:37611852-37611932 1.0000 80 chr5:138609394-138609474 1.0000 80 chr12:62650695-62650775 1.0000 80 chr7:2059320-2059400 1.0000 80 chr16:517488-517568 1.0000 80 chr22:29977151-29977231 1.0000 80 chr1:211710702-211710782 1.0000 80 chr11:93869659-93869739 1.0000 80 chr19:17791174-17791254 1.0000 80 chr21:19192083-19192163 1.0000 80 chr1:11741465-11741545 1.0000 80 chr1:112135610-112135690 1.0000 80 chr3:197633074-197633154 1.0000 80 chr7:20278373-20278453 1.0000 80 chr8:67351332-67351412 1.0000 80 chr17:79127254-79127334 1.0000 80 chr7:76961391-76961471 1.0000 80 chr2:204193597-204193677 1.0000 80 chr22:19709860-19709940 1.0000 80 chr2:177419304-177419384 1.0000 80 chr1:46668930-46669010 1.0000 80 chr19:49867250-49867330 1.0000 80 chr5:137800498-137800578 1.0000 80 chr8:103818686-103818766 1.0000 80 chr5:180615116-180615196 1.0000 80 chr17:78954348-78954428 1.0000 80 chr6:150588973-150589053 1.0000 80 chr19:36394736-36394816 1.0000 80 chr3:171178161-171178241 1.0000 80 chr19:56670608-56670688 1.0000 80 chr2:46524817-46524897 1.0000 80 chr13:115047197-11504727 1.0000 80 chr19:16939845-16939925 1.0000 80 chr11:20515062-20515142 1.0000 80 chr1:111162175-111162255 1.0000 80 chr11:71454687-71454767 1.0000 80 chr2:65267919-65267999 1.0000 80 chr12:57480400-57480480 1.0000 80 chr7:65446068-65446148 1.0000 80 chr7:107612175-107612255 1.0000 80 chr14:96011092-96011172 1.0000 80 chr1:31367377-31367457 1.0000 80 chr19:10531852-10531932 1.0000 80 chrX:11359674-11359754 1.0000 80 chr19:10530941-10531021 1.0000 80 chr22:19713029-19713109 1.0000 80 chr6:31367736-31367816 1.0000 80 chr2:3522776-3522856 1.0000 80 chr2:191427977-191428057 1.0000 80 chr7:106504196-106504276 1.0000 80 chr1:19075143-19075223 1.0000 80 chr19:18117793-18117873 1.0000 80 chr19:2169095-2169175 1.0000 80 chr19:36132533-36132613 1.0000 80 chr10:98400842-98400922 1.0000 80 chr8:145016711-145016791 1.0000 80 chr5:131997143-131997223 1.0000 80 chr2:241190865-241190945 1.0000 80 chr17:63534141-63534221 1.0000 80 chr2:85147394-85147474 1.0000 80 chr16:23739163-23739243 1.0000 80 chr5:132298407-132298487 1.0000 80 chr1:118148172-118148252 1.0000 80 chr14:53258218-53258298 1.0000 80 chr22:19706633-19706713 1.0000 80 chr2:172081887-172081967 1.0000 80 chr17:21139384-21139464 1.0000 80 chr10:75668795-75668875 1.0000 80 chr6:84140826-84140906 1.0000 80 chr10:100227018-10022709 1.0000 80 chr1:38800718-38800798 1.0000 80 chr19:2384182-2384262 1.0000 80 chr8:144100440-144100520 1.0000 80 chr6:147517796-147517876 1.0000 80 chr6:27181013-27181093 1.0000 80 chr9:140330572-140330652 1.0000 80 chr19:6199593-6199673 1.0000 80 chr2:113470920-113471000 1.0000 80 chr4:183110844-183110924 1.0000 80 chr9:77643441-77643521 1.0000 80 chr17:79071259-79071339 1.0000 80 chr8:11619736-11619816 1.0000 80 chr20:55665909-55665989 1.0000 80 chr19:45746550-45746630 1.0000 80 chr10:27389405-27389485 1.0000 80 chr6:150591047-150591127 1.0000 80 chr12:13080531-13080611 1.0000 80 chr10:94608904-94608984 1.0000 80 chr11:62313123-62313203 1.0000 80 chr12:55806072-55806152 1.0000 80 chr3:45593009-45593089 1.0000 80 chr17:81031357-81031437 1.0000 80 chr15:27777595-27777675 1.0000 80 chr12:57674153-57674233 1.0000 80 chr17:45307281-45307361 1.0000 80 chr9:34665589-34665669 1.0000 80 chr6:84762005-84762085 1.0000 80 chr19:13274012-13274092 1.0000 80 chr10:72237675-72237755 1.0000 80 chr17:43330155-43330235 1.0000 80 chr16:88948787-88948867 1.0000 80 chr2:30453604-30453684 1.0000 80 chr17:75275877-75275957 1.0000 80 chr19:36869966-36870046 1.0000 80 chr1:165567418-165567498 1.0000 80 chr17:74525092-74525172 1.0000 80 chr6:64282232-64282312 1.0000 80 chr19:10981493-10981573 1.0000 80 chr12:6938371-6938451 1.0000 80 chr1:205558020-205558100 1.0000 80 chr1:39581065-39581145 1.0000 80 chr5:102594340-102594420 1.0000 80 chr1:65422752-65422832 1.0000 80 chr12:125425329-12542540 1.0000 80 chr12:76538133-76538213 1.0000 80 chr19:51326740-51326820 1.0000 80 chr1:9335706-9335786 1.0000 80 chr1:156675898-156675978 1.0000 80 chr1:32014220-32014300 1.0000 80 chr9:138333340-138333420 1.0000 80 chr1:244517205-244517285 1.0000 80 chr10:6962133-6962213 1.0000 80 chr3:9834140-9834220 1.0000 80 chr16:53132930-53133010 1.0000 80 chr17:79386729-79386809 1.0000 80 chr5:139127569-139127649 1.0000 80 chr5:137822887-137822967 1.0000 80 chr6:31165530-31165610 1.0000 80 chr17:40705584-40705664 1.0000 80 chr19:41035185-41035265 1.0000 80 chr1:202134852-202134932 1.0000 80 chr15:79285368-79285448 1.0000 80 chr9:14322757-14322837 1.0000 80 chr19:56159838-56159918 1.0000 80 chr7:100253949-100254029 1.0000 80 chr1:202129776-202129856 1.0000 80 chr8:27219340-27219420 1.0000 80 chr5:149026286-149026366 1.0000 80 chr19:50836763-50836843 1.0000 80 chr11:2951515-2951595 1.0000 80 chr1:116694910-116694990 1.0000 80 chr5:176080531-176080611 1.0000 80 chr21:46230875-46230955 1.0000 80 chr11:65246302-65246382 1.0000 80 chr11:76400508-76400588 1.0000 80 chr10:134145533-13414561 1.0000 80 chr8:39836043-39836123 1.0000 80 chr19:18402460-18402540 1.0000 80 chr22:41048206-41048286 1.0000 80 chr20:49347777-49347857 1.0000 80 chr11:110300552-11030063 1.0000 80 chr5:176935978-176936058 1.0000 80 chr20:4203202-4203282 1.0000 80 chr5:89825410-89825490 1.0000 80 chr7:139677200-139677280 1.0000 80 chr12:49582261-49582341 1.0000 80 chr14:66974808-66974888 1.0000 80 chr6:99963905-99963985 1.0000 80 chr19:18544018-18544098 1.0000 80 chr11:94300488-94300568 1.0000 80 chr15:31780977-31781057 1.0000 80 chr11:6411508-6411588 1.0000 80 chr1:26527739-26527819 1.0000 80 chr3:32538562-32538642 1.0000 80 chr7:642238-642318 1.0000 80 chr19:951647-951727 1.0000 80 chr19:17535937-17536017 1.0000 80 chr13:76123830-76123910 1.0000 80 chr1:153599469-153599549 1.0000 80 chr8:681366-681446 1.0000 80 chr19:1275949-1276029 1.0000 80 chr1:161360044-161360124 1.0000 80 chr18:12948088-12948168 1.0000 80 chr19:17850162-17850242 1.0000 80 chr9:126158324-126158404 1.0000 80 chr1:44703868-44703948 1.0000 80 chr12:50236891-50236971 1.0000 80 chr6:13274330-13274410 1.0000 80 chr19:639524-639604 1.0000 80 chr19:51945185-51945265 1.0000 80 chr1:92407280-92407360 1.0000 80 chr21:15824841-15824921 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_EGR1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/EGR1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.188 C 0.303 G 0.328 T 0.181 Background letter frequencies (from file dataset with add-one prior applied): A 0.188 C 0.303 G 0.328 T 0.181 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGGGYGG MEME-1 width = 8 sites = 148 llr = 1054 E-value = 2.0e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::1:: pos.-specific C :::::5:: probability G a39aa:a7 matrix T :7:::4:2 bits 2.5 2.2 2.0 1.7 * * * Relative 1.5 * ** * Entropy 1.2 ***** * (10.3 bits) 1.0 ***** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGCGG consensus G T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:126158324-126158404 45 4.08e-05 AGGGAGGAGA GTGGGTGG TTCGTGGGGG chr7:642238-642318 47 4.08e-05 AGCCCGGGGC GTGGGTGG TGGGCGTTTC chr9:14322757-14322837 25 4.08e-05 CCTCTCGAGC GTGGGTGG GTGCGTGGGT chr15:79285368-79285448 54 4.08e-05 tgtgtggtgt gtgggtgg tgtgtatggg chr5:137822887-137822967 46 4.08e-05 GGCCCACAGC GTGGGTGG CAGCCTTGGA chr17:79386729-79386809 73 4.08e-05 tgcgggggca gtgggtgg chr16:53132930-53133010 29 4.08e-05 CCCACAGAGG GTGGGTGG TGAGCAGCTG chr12:76538133-76538213 44 4.08e-05 gtgtgtgtgt gtgggtgg gtgtgtgggt chr12:125425329-12542540 44 4.08e-05 caccctgggc gtgggtgg acgtggggag chr1:65422752-65422832 63 4.08e-05 taaagaatga gtgggtgg gaggaagtga chr1:39581065-39581145 48 4.08e-05 gagtatttgt gtgggtgg gtcgtgtcat chr17:75275877-75275957 20 4.08e-05 GAGTGGGCGT GTGGGTGG GGGTTGCGGT chr17:43330155-43330235 53 4.08e-05 gaggttgtat gtgggtgg ggacaggggt chr6:84762005-84762085 47 4.08e-05 CCCTCACTGC GTGGGTGG CCGAGATCAT chr12:57674153-57674233 31 4.08e-05 TTGCTGAGGC GTGGGTGG GAGAGCAGGA chr3:45593009-45593089 31 4.08e-05 CACTCAGAGC GTGGGTGG CTAAAGGCTC chr2:85147394-85147474 30 4.08e-05 tggcatgtga gtgggtgg gctgactgag chr14:96011092-96011172 34 4.08e-05 AGCTGGAGGC GTGGGTGG GCTGGAGGGA chr7:107612175-107612255 27 4.08e-05 GGGCCTGTGC GTGGGTGG AGACAGACAG chr7:65446068-65446148 19 4.08e-05 GCCAGAGTGT GTGggtgg ctcatgccag chr11:20515062-20515142 57 4.08e-05 agcctAATGC GTGGGTGG ACATCTCAGT chr17:78954348-78954428 25 4.08e-05 gggtgggtga gtgggtgg gtgaatgggc chr3:197633074-197633154 26 4.08e-05 CCAGCGGTAT GTGGGTGG GACACCCGGC chr11:64983412-64983492 13 4.08e-05 gagcaagcga gtgggtgg ataagcgggt chr15:99968008-99968088 47 4.08e-05 gggtggacgc gtgggtgg acgcgtgggt chr2:48834857-48834937 49 4.08e-05 gagtgacagc gtgggtgg ggagggggga chr17:73266790-73266870 54 4.08e-05 GCCGGCCTGC GTGGGTGG GGACGCAGGC chr7:158768362-158768442 57 4.08e-05 ggggaggtgc gtgggtgg agcacggagg chr5:2137181-2137261 62 4.08e-05 GCGCGAGTGC GTGGGTGG ACAGAAGTGA chr12:50236891-50236971 39 1.09e-04 TGCTGTCGGC GTGGGCGG TGGCGGTGCC chr19:1275949-1276029 44 1.09e-04 GTCACGTGGT GTGGGCGG TGCAGGGGCC chr13:76123830-76123910 60 1.09e-04 CAAGGCGCGC GTGggcgg aagcggcggc chr5:89825410-89825490 51 1.09e-04 ATCGCGTCAA GTGGGCGG AGGTGGGAAG chr22:41048206-41048286 25 1.09e-04 TGTGCTGTGA GTGGGCGG GAATGAATGA chr7:100253949-100254029 55 1.09e-04 CTAGCGGCCC GTGGGCGG TGGCGGGATC chr1:32014220-32014300 55 1.09e-04 AAGAGCCAAC GTGGGCGG GGGGCGTGGC chr5:131997143-131997223 59 1.09e-04 ctcagaaagc gtgggcgg tttgcctaag chr19:2169095-2169175 60 1.09e-04 GAGCCCGGCT GTGGGCGG CGGTGAGTGG chr6:31367736-31367816 51 1.09e-04 CCTGGAATAC GTGGGCGG CCCGTGGGAG chr12:57480400-57480480 62 1.09e-04 GGTGGCAGGA GTGGGCGG GAAGAACAGA chr11:71454687-71454767 62 1.09e-04 tgccaagagt gtgggcgg aagacaaccc chr5:180615116-180615196 29 1.09e-04 ggaggccgag gtgggcgg atcacctgag chr5:137800498-137800578 4 1.09e-04 GAG GTGGGCGG GCGGGCCCTG chr11:93869659-93869739 57 1.09e-04 ggaggccgac gtgggcgg atcacgaggt chr12:62650695-62650775 67 1.09e-04 TGGTAGGGTC GTGGGCGG GAATAA chr1:9686705-9686785 29 1.09e-04 aggacgaggc gtgggcgg atcacctgag chr19:51568141-51568221 23 1.09e-04 CCGGCCCCGA GTGGGCGG GGGGCGGAGC chr19:13229798-13229878 5 1.09e-04 GGGT GTGGGCGG AGTTACTTCG chr16:85470459-85470539 21 1.09e-04 ATCCCACGCA GTGGGCGG CCCGGGACTG chr16:2186175-2186255 43 1.09e-04 GCTAAAGTGC GTGGGCGG GAAGCGGTGG chr10:29086215-29086295 53 1.09e-04 cttgagtcca gTGggcgg atggcttgag chr12:57483731-57483811 57 1.09e-04 GGGAGTGTGT GTGGGCGG AACGGCCCCG chr19:47949426-47949506 27 1.09e-04 TAGGAGGCGC GTGGGCGG CACGGAGGAG chr19:47538929-47539009 62 1.09e-04 CCTTAATAGA GTGGGCGG GGAAAAATCC chr12:6938371-6938451 70 1.32e-04 GGAAGTGTGC GTGGGTGT GTG chr16:88948787-88948867 52 1.32e-04 atggctgtgt gtgggtgt ggctgtgtgc chr4:183110844-183110924 42 1.32e-04 CAGTAGGCGT GTGGGTGT GTGTGTTGGG chr1:19075143-19075223 8 1.32e-04 GAAgtga gtgggtgt acgtgagggt chr1:31367377-31367457 65 1.32e-04 ctacgtgtgt gtgggtgt gtgtggat chr17:79127254-79127334 25 1.32e-04 atttgcctgc gtgggtgt tcctcccagc chr16:84964035-84964115 59 1.32e-04 gtgtgggtga gtgggtgt gtgtgggtgt chr8:144799060-144799140 46 1.32e-04 gtgtgtgtgc gtgggtgt gtgGgggggt chr2:26468104-26468184 42 1.32e-04 gtgtgtgtgt gtgggtgt gtgtgggcgt chr5:180021850-180021930 48 1.32e-04 gggttcgtgt gtgggtgt gtgggagtga chr1:245627750-245627830 39 1.32e-04 gtgtgtgccc gtgggtgt gtgtgggcgt chr19:18544018-18544098 10 1.69e-04 CCTGGGTGA GTGGGCGT CCCTGCTCCC chr11:110300552-11030063 53 1.69e-04 ACCGGGCGGC GTGGGCGT GAGAGGCGGG chr10:6962133-6962213 47 1.69e-04 CGGAGGTAAC GTGGGCGT TCGCCTTAGG chr2:113470920-113471000 26 1.69e-04 agcttccagc gtgggcgt ggcggaggca chr1:118148172-118148252 18 1.69e-04 GGAGGTAGGC GTGGGCGT TACCCGCCTC chr19:16939845-16939925 30 1.69e-04 aggtaaacgc gtgggcgt gtctgtgtgc chr22:29977151-29977231 47 1.69e-04 GGCGTTTCCT GTGGGCGT CTCCAACTCC chr7:562158-562238 30 1.69e-04 CGGAGGAGGC GTGGGCGT CCCCGCCCAG chr17:37213230-37213310 21 1.69e-04 TAAAAAAAGC GTGGGCGT GCCTTGCGCA chr22:21792465-21792545 51 1.69e-04 GGGCCTGGAC GTGGGCGT GAGATGTGTT chr21:38823898-38823978 67 1.69e-04 accgtctagc gtgggcgt gcagta chr19:17850162-17850242 70 2.86e-04 GGGGAAGAGT GTGGGAGG CAG chr1:26527739-26527819 45 2.86e-04 CAGGGAAGAG GTGGGAGG GCTGCTTCCC chr19:18402460-18402540 58 2.86e-04 GCGAGAATGC GGGGGTGG GCACCCTATT chr8:39836043-39836123 22 2.86e-04 CATGGAGGGC GGGGGTGG AGGGGGTGTG chr11:76400508-76400588 61 2.86e-04 cgaggaggga gtgggagg tgaggaagtg chr17:40705584-40705664 37 2.86e-04 GACCGGGAGC GTGGGAGG ATTGATGGGT chr19:51326740-51326820 33 2.86e-04 ATGGAGGAGC GGGGGTGG AAGTTTAGGG chr6:150591047-150591127 35 2.86e-04 GGAGTTGGAG GTGGGAGG AGGATGATGT chr19:45746550-45746630 33 2.86e-04 GCAGACGTGC GGGGGTGG ACAGGAGGCC chr9:77643441-77643521 31 2.86e-04 AGGCCCCTTG GTGGGAGG CGGAGGAGGA chr6:147517796-147517876 5 2.86e-04 ACAT GGGGGTGG CGGGGGAGTA chr6:84140826-84140906 6 2.86e-04 CGAGA GGGGGTGG ACGCGTCGGG chr19:17791174-17791254 35 2.86e-04 CGCGGAGGGC GTGGGAGG CGCGCCGGCG chr17:6478741-6478821 68 2.86e-04 GAGGAAGTGT GGGGGTGG AGGAG chr8:96080040-96080120 31 2.86e-04 ctgacaccat gggggtgg gagccttttg chr20:46008614-46008694 20 2.86e-04 ggggacagta gtgggagg aacaggctgg chr12:53229840-53229920 34 2.86e-04 CCTGGGTGGC GTGGGAGG AGGAAACAGT chr17:7210804-7210884 9 2.86e-04 ACGGGTCG GTGGGAGG GAGGGTGGAG chr8:681366-681446 48 4.09e-04 GGAGGGCTGC GGGGGCGG CGGTGCGGGC chr19:17535937-17536017 36 4.09e-04 CCCTGGAGGA GGGGGCGG GTCGAGGCTG chr19:951647-951727 63 4.09e-04 GCTGCCCGGA GGGGGCGG CTGCTGACTC chr11:6411508-6411588 54 4.09e-04 GGCAGGGAGA GGGGGCGG AATCGGGGCG chr11:65246302-65246382 36 4.09e-04 CTCTGGCTGC GGGGGCGG GCTGAGCTCC chr11:2951515-2951595 58 4.09e-04 GAGGGTCGGC GGGGGCGG CTGAGTCATC chr3:9834140-9834220 48 4.09e-04 CAGTTGACGC GGGGGCGG GGAGTCAGCG chr1:156675898-156675978 53 4.09e-04 GAGGCTGGGC GGGGGCGG CACGGTCCCC chr6:64282232-64282312 35 4.09e-04 GACGTCCGGA GGGGGCGG GCCTCCGCCC chr10:75668795-75668875 55 4.09e-04 CGGGGGAGGA GGGGGCGG AAGGGGAGAA chr19:36132533-36132613 71 4.09e-04 AGCTGACGCT GGGGGCGG GT chr22:19713029-19713109 31 4.09e-04 aggacgctgt gggggcgg tgaggacgct chr19:10531852-10531932 22 4.09e-04 TTTGGCTGGC GGGGGCGG AGGGAATTCG chr19:36394736-36394816 23 4.09e-04 TGCTCATCGT GGGGGCGG TGTTCCTGTG chr22:19709860-19709940 17 4.09e-04 GTggggcggc gggggcgg cggaggcggg chr2:204193597-204193677 67 4.09e-04 GGATGGCGGA GGGGGCGG AGAGTG chr7:100813265-100813345 29 4.09e-04 CAGGCTTCGC GGGGGCGG TGCCCAGGCT chr1:93317949-93318029 34 4.09e-04 tgaaccctgc gggggcgg aggttgcagt chr1:38022476-38022556 41 4.09e-04 GCGGGAGTGA GGGGGCGG TTTCCATGGT chr22:19715111-19715191 37 4.09e-04 agggcgctgt gggggcgg tgaggacgct chr1:161360044-161360124 14 4.97e-04 gtgacggggc gtgggagt gactgggcgc chr7:139677200-139677280 70 4.97e-04 caagggaatt gtgggagt taa chr5:176935978-176936058 58 4.97e-04 GCTGAGCTGC GGGGGTGT GGGGCTGCTG chr8:11619736-11619816 5 4.97e-04 CGGC GGGGGTGT GTGTGGGGGT chr1:44703868-44703948 50 6.04e-04 CAGGCGGGGC GGGGGCGT GTGCAGGCAA chr20:49347777-49347857 11 6.04e-04 TCGTGCGGTG GTAGGCGG GGTTTTGAGG chr10:72237675-72237755 48 6.04e-04 ACGTGCTCGC GGGGGCGT GCGGGGCCGT chr19:13274012-13274092 50 6.04e-04 CCCAGGTCCC GGGGGCGT CAGAGGCAAT chr12:55806072-55806152 25 6.04e-04 ACTGCTCTGC GGGGGCGT ACTTCCCACA chr17:79071259-79071339 61 6.04e-04 AGTCAGAGCT GTAGGCGG GGCGGCCGCG chr9:140330572-140330652 50 6.04e-04 GAGGCTCAGC GGGGGCGT GGCGTGGACA chr16:517488-517568 32 6.04e-04 GAGGAGGTGC GGGGGCGT CAGGGAGGAG chr8:22516304-22516384 42 6.04e-04 TGAGCAAAGA GTAGGCGG TGGTGGTTGA chr19:56159838-56159918 53 7.16e-04 ACGCGAGTGC GGGGGAGG GGTGTGGGGG chr3:171178161-171178241 64 7.16e-04 CCACTCAGCA GGGGGAGG GTGGGGGTG chr4:13658287-13658367 5 7.16e-04 AGCA GGGGGAGG TGTTTCTCTG chr19:7985864-7985944 38 7.39e-04 GGGGTAATGC GTGGGTGA GGCGAGGGCT chr15:31780977-31781057 14 9.25e-04 AAGAGGAAAA GTGGGTGC AAATAATTCC chr10:94608904-94608984 37 9.25e-04 CGCGGCCGCA GTGGGCGA GAAGAGAGCG chr19:49867250-49867330 42 9.25e-04 GGTGGTGAAC GTGGGCGA AAGTGAGGAA chr1:112135610-112135690 4 9.25e-04 AGA GGAGGTGG CTGCCCAGAG chr3:12933588-12933668 36 9.25e-04 ttttgaatgc gtGGGTGC TTTTCTGGGT chr1:92407280-92407360 8 1.06e-03 cggaggc ggaggcgg aggcggaggc chr1:116694910-116694990 36 1.06e-03 CTGGCCCTCG GGAGGCGG AAGACTAGCT chr5:139127569-139127649 23 1.06e-03 GGGCCTTTGC GGAGGCGG TAATGAGGTC chr5:102594340-102594420 63 1.06e-03 aggcggagga ggaggcgg aggagggggc chr19:44174375-44174455 30 1.06e-03 CCCCAGATGC GTGGGCGC CTCCCCCTCC chr1:112297736-112297816 58 1.06e-03 GCGGATGCAT GGAGGCGG ATGCATGGag chr10:100227018-10022709 38 1.19e-03 CACTCACACA GGAGGCGT CAATAAAAGA chr6:80487814-80487894 28 1.54e-03 GAGCATGCGC GGAGGAGG GACAGGGAGC chr5:138609394-138609474 72 1.69e-03 CGCCACGCTC GTGAGCGG A chr16:88701338-88701418 56 1.69e-03 CGCAGGATGC GGGGGCGC CCAGCCGAGG chr2:30453604-30453684 52 2.38e-03 CAGACCGGGC GTATGTGT GTCTCCAATG chr1:205558020-205558100 11 2.59e-03 CACAGATGGA GGGTGAGG GTGTAGGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:126158324-126158404 4.1e-05 44_[+1]_28 chr7:642238-642318 4.1e-05 46_[+1]_26 chr9:14322757-14322837 4.1e-05 24_[+1]_48 chr15:79285368-79285448 4.1e-05 53_[+1]_19 chr5:137822887-137822967 4.1e-05 45_[+1]_27 chr17:79386729-79386809 4.1e-05 72_[+1] chr16:53132930-53133010 4.1e-05 28_[+1]_44 chr12:76538133-76538213 4.1e-05 43_[+1]_29 chr12:125425329-12542540 4.1e-05 43_[+1]_29 chr1:65422752-65422832 4.1e-05 62_[+1]_10 chr1:39581065-39581145 4.1e-05 47_[+1]_25 chr17:75275877-75275957 4.1e-05 19_[+1]_53 chr17:43330155-43330235 4.1e-05 52_[+1]_20 chr6:84762005-84762085 4.1e-05 46_[+1]_26 chr12:57674153-57674233 4.1e-05 30_[+1]_42 chr3:45593009-45593089 4.1e-05 30_[+1]_42 chr2:85147394-85147474 4.1e-05 29_[+1]_43 chr14:96011092-96011172 4.1e-05 33_[+1]_39 chr7:107612175-107612255 4.1e-05 26_[+1]_46 chr7:65446068-65446148 4.1e-05 18_[+1]_54 chr11:20515062-20515142 4.1e-05 56_[+1]_16 chr17:78954348-78954428 4.1e-05 24_[+1]_48 chr3:197633074-197633154 4.1e-05 25_[+1]_47 chr11:64983412-64983492 4.1e-05 12_[+1]_60 chr15:99968008-99968088 4.1e-05 46_[+1]_26 chr2:48834857-48834937 4.1e-05 48_[+1]_24 chr17:73266790-73266870 4.1e-05 53_[+1]_19 chr7:158768362-158768442 4.1e-05 56_[+1]_16 chr5:2137181-2137261 4.1e-05 61_[+1]_11 chr12:50236891-50236971 0.00011 38_[+1]_34 chr19:1275949-1276029 0.00011 43_[+1]_29 chr13:76123830-76123910 0.00011 59_[+1]_13 chr5:89825410-89825490 0.00011 50_[+1]_22 chr22:41048206-41048286 0.00011 24_[+1]_48 chr7:100253949-100254029 0.00011 54_[+1]_18 chr1:32014220-32014300 0.00011 54_[+1]_18 chr5:131997143-131997223 0.00011 58_[+1]_14 chr19:2169095-2169175 0.00011 59_[+1]_13 chr6:31367736-31367816 0.00011 50_[+1]_22 chr12:57480400-57480480 0.00011 61_[+1]_11 chr11:71454687-71454767 0.00011 61_[+1]_11 chr5:180615116-180615196 0.00011 28_[+1]_44 chr5:137800498-137800578 0.00011 3_[+1]_69 chr11:93869659-93869739 0.00011 56_[+1]_16 chr12:62650695-62650775 0.00011 66_[+1]_6 chr1:9686705-9686785 0.00011 28_[+1]_44 chr19:51568141-51568221 0.00011 22_[+1]_50 chr19:13229798-13229878 0.00011 4_[+1]_68 chr16:85470459-85470539 0.00011 20_[+1]_52 chr16:2186175-2186255 0.00011 42_[+1]_30 chr10:29086215-29086295 0.00011 52_[+1]_20 chr12:57483731-57483811 0.00011 56_[+1]_16 chr19:47949426-47949506 0.00011 26_[+1]_46 chr19:47538929-47539009 0.00011 61_[+1]_11 chr12:6938371-6938451 0.00013 69_[+1]_3 chr16:88948787-88948867 0.00013 51_[+1]_21 chr4:183110844-183110924 0.00013 41_[+1]_31 chr1:19075143-19075223 0.00013 7_[+1]_65 chr1:31367377-31367457 0.00013 64_[+1]_8 chr17:79127254-79127334 0.00013 24_[+1]_48 chr16:84964035-84964115 0.00013 58_[+1]_14 chr8:144799060-144799140 0.00013 45_[+1]_27 chr2:26468104-26468184 0.00013 41_[+1]_31 chr5:180021850-180021930 0.00013 47_[+1]_25 chr1:245627750-245627830 0.00013 38_[+1]_34 chr19:18544018-18544098 0.00017 9_[+1]_63 chr11:110300552-11030063 0.00017 52_[+1]_20 chr10:6962133-6962213 0.00017 46_[+1]_26 chr2:113470920-113471000 0.00017 25_[+1]_47 chr1:118148172-118148252 0.00017 17_[+1]_55 chr19:16939845-16939925 0.00017 29_[+1]_43 chr22:29977151-29977231 0.00017 46_[+1]_26 chr7:562158-562238 0.00017 29_[+1]_43 chr17:37213230-37213310 0.00017 20_[+1]_52 chr22:21792465-21792545 0.00017 50_[+1]_22 chr21:38823898-38823978 0.00017 66_[+1]_6 chr19:17850162-17850242 0.00029 69_[+1]_3 chr1:26527739-26527819 0.00029 44_[+1]_28 chr19:18402460-18402540 0.00029 57_[+1]_15 chr8:39836043-39836123 0.00029 21_[+1]_51 chr11:76400508-76400588 0.00029 60_[+1]_12 chr17:40705584-40705664 0.00029 36_[+1]_36 chr19:51326740-51326820 0.00029 32_[+1]_40 chr6:150591047-150591127 0.00029 34_[+1]_38 chr19:45746550-45746630 0.00029 32_[+1]_40 chr9:77643441-77643521 0.00029 30_[+1]_42 chr6:147517796-147517876 0.00029 4_[+1]_68 chr6:84140826-84140906 0.00029 5_[+1]_67 chr19:17791174-17791254 0.00029 34_[+1]_38 chr17:6478741-6478821 0.00029 67_[+1]_5 chr8:96080040-96080120 0.00029 30_[+1]_42 chr20:46008614-46008694 0.00029 19_[+1]_53 chr12:53229840-53229920 0.00029 33_[+1]_39 chr17:7210804-7210884 0.00029 8_[+1]_64 chr8:681366-681446 0.00041 47_[+1]_25 chr19:17535937-17536017 0.00041 35_[+1]_37 chr19:951647-951727 0.00041 62_[+1]_10 chr11:6411508-6411588 0.00041 53_[+1]_19 chr11:65246302-65246382 0.00041 35_[+1]_37 chr11:2951515-2951595 0.00041 57_[+1]_15 chr3:9834140-9834220 0.00041 47_[+1]_25 chr1:156675898-156675978 0.00041 52_[+1]_20 chr6:64282232-64282312 0.00041 34_[+1]_38 chr10:75668795-75668875 0.00041 54_[+1]_18 chr19:36132533-36132613 0.00041 70_[+1]_2 chr22:19713029-19713109 0.00041 30_[+1]_42 chr19:10531852-10531932 0.00041 21_[+1]_51 chr19:36394736-36394816 0.00041 22_[+1]_50 chr22:19709860-19709940 0.00041 16_[+1]_56 chr2:204193597-204193677 0.00041 66_[+1]_6 chr7:100813265-100813345 0.00041 28_[+1]_44 chr1:93317949-93318029 0.00041 33_[+1]_39 chr1:38022476-38022556 0.00041 40_[+1]_32 chr22:19715111-19715191 0.00041 36_[+1]_36 chr1:161360044-161360124 0.0005 13_[+1]_59 chr7:139677200-139677280 0.0005 69_[+1]_3 chr5:176935978-176936058 0.0005 57_[+1]_15 chr8:11619736-11619816 0.0005 4_[+1]_68 chr1:44703868-44703948 0.0006 49_[+1]_23 chr20:49347777-49347857 0.0006 10_[+1]_62 chr10:72237675-72237755 0.0006 47_[+1]_25 chr19:13274012-13274092 0.0006 49_[+1]_23 chr12:55806072-55806152 0.0006 24_[+1]_48 chr17:79071259-79071339 0.0006 60_[+1]_12 chr9:140330572-140330652 0.0006 49_[+1]_23 chr16:517488-517568 0.0006 31_[+1]_41 chr8:22516304-22516384 0.0006 41_[+1]_31 chr19:56159838-56159918 0.00072 52_[+1]_20 chr3:171178161-171178241 0.00072 63_[+1]_9 chr4:13658287-13658367 0.00072 4_[+1]_68 chr19:7985864-7985944 0.00074 37_[+1]_35 chr15:31780977-31781057 0.00092 13_[+1]_59 chr10:94608904-94608984 0.00092 36_[+1]_36 chr19:49867250-49867330 0.00092 41_[+1]_31 chr1:112135610-112135690 0.00092 3_[+1]_69 chr3:12933588-12933668 0.00092 35_[+1]_37 chr1:92407280-92407360 0.0011 7_[+1]_65 chr1:116694910-116694990 0.0011 35_[+1]_37 chr5:139127569-139127649 0.0011 22_[+1]_50 chr5:102594340-102594420 0.0011 62_[+1]_10 chr19:44174375-44174455 0.0011 29_[+1]_43 chr1:112297736-112297816 0.0011 57_[+1]_15 chr10:100227018-10022709 0.0012 37_[+1]_35 chr6:80487814-80487894 0.0015 27_[+1]_45 chr5:138609394-138609474 0.0017 71_[+1]_1 chr16:88701338-88701418 0.0017 55_[+1]_17 chr2:30453604-30453684 0.0024 51_[+1]_21 chr1:205558020-205558100 0.0026 10_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGYGG width=8 seqs=148 chr9:126158324-126158404 ( 45) GTGGGTGG 1 chr7:642238-642318 ( 47) GTGGGTGG 1 chr9:14322757-14322837 ( 25) GTGGGTGG 1 chr15:79285368-79285448 ( 54) GTGGGTGG 1 chr5:137822887-137822967 ( 46) GTGGGTGG 1 chr17:79386729-79386809 ( 73) GTGGGTGG 1 chr16:53132930-53133010 ( 29) GTGGGTGG 1 chr12:76538133-76538213 ( 44) GTGGGTGG 1 chr12:125425329-12542540 ( 44) GTGGGTGG 1 chr1:65422752-65422832 ( 63) GTGGGTGG 1 chr1:39581065-39581145 ( 48) GTGGGTGG 1 chr17:75275877-75275957 ( 20) GTGGGTGG 1 chr17:43330155-43330235 ( 53) GTGGGTGG 1 chr6:84762005-84762085 ( 47) GTGGGTGG 1 chr12:57674153-57674233 ( 31) GTGGGTGG 1 chr3:45593009-45593089 ( 31) GTGGGTGG 1 chr2:85147394-85147474 ( 30) GTGGGTGG 1 chr14:96011092-96011172 ( 34) GTGGGTGG 1 chr7:107612175-107612255 ( 27) GTGGGTGG 1 chr7:65446068-65446148 ( 19) GTGGGTGG 1 chr11:20515062-20515142 ( 57) GTGGGTGG 1 chr17:78954348-78954428 ( 25) GTGGGTGG 1 chr3:197633074-197633154 ( 26) GTGGGTGG 1 chr11:64983412-64983492 ( 13) GTGGGTGG 1 chr15:99968008-99968088 ( 47) GTGGGTGG 1 chr2:48834857-48834937 ( 49) GTGGGTGG 1 chr17:73266790-73266870 ( 54) GTGGGTGG 1 chr7:158768362-158768442 ( 57) GTGGGTGG 1 chr5:2137181-2137261 ( 62) GTGGGTGG 1 chr12:50236891-50236971 ( 39) GTGGGCGG 1 chr19:1275949-1276029 ( 44) GTGGGCGG 1 chr13:76123830-76123910 ( 60) GTGGGCGG 1 chr5:89825410-89825490 ( 51) GTGGGCGG 1 chr22:41048206-41048286 ( 25) GTGGGCGG 1 chr7:100253949-100254029 ( 55) GTGGGCGG 1 chr1:32014220-32014300 ( 55) GTGGGCGG 1 chr5:131997143-131997223 ( 59) GTGGGCGG 1 chr19:2169095-2169175 ( 60) GTGGGCGG 1 chr6:31367736-31367816 ( 51) GTGGGCGG 1 chr12:57480400-57480480 ( 62) GTGGGCGG 1 chr11:71454687-71454767 ( 62) GTGGGCGG 1 chr5:180615116-180615196 ( 29) GTGGGCGG 1 chr5:137800498-137800578 ( 4) GTGGGCGG 1 chr11:93869659-93869739 ( 57) GTGGGCGG 1 chr12:62650695-62650775 ( 67) GTGGGCGG 1 chr1:9686705-9686785 ( 29) GTGGGCGG 1 chr19:51568141-51568221 ( 23) GTGGGCGG 1 chr19:13229798-13229878 ( 5) GTGGGCGG 1 chr16:85470459-85470539 ( 21) GTGGGCGG 1 chr16:2186175-2186255 ( 43) GTGGGCGG 1 chr10:29086215-29086295 ( 53) GTGGGCGG 1 chr12:57483731-57483811 ( 57) GTGGGCGG 1 chr19:47949426-47949506 ( 27) GTGGGCGG 1 chr19:47538929-47539009 ( 62) GTGGGCGG 1 chr12:6938371-6938451 ( 70) GTGGGTGT 1 chr16:88948787-88948867 ( 52) GTGGGTGT 1 chr4:183110844-183110924 ( 42) GTGGGTGT 1 chr1:19075143-19075223 ( 8) GTGGGTGT 1 chr1:31367377-31367457 ( 65) GTGGGTGT 1 chr17:79127254-79127334 ( 25) GTGGGTGT 1 chr16:84964035-84964115 ( 59) GTGGGTGT 1 chr8:144799060-144799140 ( 46) GTGGGTGT 1 chr2:26468104-26468184 ( 42) GTGGGTGT 1 chr5:180021850-180021930 ( 48) GTGGGTGT 1 chr1:245627750-245627830 ( 39) GTGGGTGT 1 chr19:18544018-18544098 ( 10) GTGGGCGT 1 chr11:110300552-11030063 ( 53) GTGGGCGT 1 chr10:6962133-6962213 ( 47) GTGGGCGT 1 chr2:113470920-113471000 ( 26) GTGGGCGT 1 chr1:118148172-118148252 ( 18) GTGGGCGT 1 chr19:16939845-16939925 ( 30) GTGGGCGT 1 chr22:29977151-29977231 ( 47) GTGGGCGT 1 chr7:562158-562238 ( 30) GTGGGCGT 1 chr17:37213230-37213310 ( 21) GTGGGCGT 1 chr22:21792465-21792545 ( 51) GTGGGCGT 1 chr21:38823898-38823978 ( 67) GTGGGCGT 1 chr19:17850162-17850242 ( 70) GTGGGAGG 1 chr1:26527739-26527819 ( 45) GTGGGAGG 1 chr19:18402460-18402540 ( 58) GGGGGTGG 1 chr8:39836043-39836123 ( 22) GGGGGTGG 1 chr11:76400508-76400588 ( 61) GTGGGAGG 1 chr17:40705584-40705664 ( 37) GTGGGAGG 1 chr19:51326740-51326820 ( 33) GGGGGTGG 1 chr6:150591047-150591127 ( 35) GTGGGAGG 1 chr19:45746550-45746630 ( 33) GGGGGTGG 1 chr9:77643441-77643521 ( 31) GTGGGAGG 1 chr6:147517796-147517876 ( 5) GGGGGTGG 1 chr6:84140826-84140906 ( 6) GGGGGTGG 1 chr19:17791174-17791254 ( 35) GTGGGAGG 1 chr17:6478741-6478821 ( 68) GGGGGTGG 1 chr8:96080040-96080120 ( 31) GGGGGTGG 1 chr20:46008614-46008694 ( 20) GTGGGAGG 1 chr12:53229840-53229920 ( 34) GTGGGAGG 1 chr17:7210804-7210884 ( 9) GTGGGAGG 1 chr8:681366-681446 ( 48) GGGGGCGG 1 chr19:17535937-17536017 ( 36) GGGGGCGG 1 chr19:951647-951727 ( 63) GGGGGCGG 1 chr11:6411508-6411588 ( 54) GGGGGCGG 1 chr11:65246302-65246382 ( 36) GGGGGCGG 1 chr11:2951515-2951595 ( 58) GGGGGCGG 1 chr3:9834140-9834220 ( 48) GGGGGCGG 1 chr1:156675898-156675978 ( 53) GGGGGCGG 1 chr6:64282232-64282312 ( 35) GGGGGCGG 1 chr10:75668795-75668875 ( 55) GGGGGCGG 1 chr19:36132533-36132613 ( 71) GGGGGCGG 1 chr22:19713029-19713109 ( 31) GGGGGCGG 1 chr19:10531852-10531932 ( 22) GGGGGCGG 1 chr19:36394736-36394816 ( 23) GGGGGCGG 1 chr22:19709860-19709940 ( 17) GGGGGCGG 1 chr2:204193597-204193677 ( 67) GGGGGCGG 1 chr7:100813265-100813345 ( 29) GGGGGCGG 1 chr1:93317949-93318029 ( 34) GGGGGCGG 1 chr1:38022476-38022556 ( 41) GGGGGCGG 1 chr22:19715111-19715191 ( 37) GGGGGCGG 1 chr1:161360044-161360124 ( 14) GTGGGAGT 1 chr7:139677200-139677280 ( 70) GTGGGAGT 1 chr5:176935978-176936058 ( 58) GGGGGTGT 1 chr8:11619736-11619816 ( 5) GGGGGTGT 1 chr1:44703868-44703948 ( 50) GGGGGCGT 1 chr20:49347777-49347857 ( 11) GTAGGCGG 1 chr10:72237675-72237755 ( 48) GGGGGCGT 1 chr19:13274012-13274092 ( 50) GGGGGCGT 1 chr12:55806072-55806152 ( 25) GGGGGCGT 1 chr17:79071259-79071339 ( 61) GTAGGCGG 1 chr9:140330572-140330652 ( 50) GGGGGCGT 1 chr16:517488-517568 ( 32) GGGGGCGT 1 chr8:22516304-22516384 ( 42) GTAGGCGG 1 chr19:56159838-56159918 ( 53) GGGGGAGG 1 chr3:171178161-171178241 ( 64) GGGGGAGG 1 chr4:13658287-13658367 ( 5) GGGGGAGG 1 chr19:7985864-7985944 ( 38) GTGGGTGA 1 chr15:31780977-31781057 ( 14) GTGGGTGC 1 chr10:94608904-94608984 ( 37) GTGGGCGA 1 chr19:49867250-49867330 ( 42) GTGGGCGA 1 chr1:112135610-112135690 ( 4) GGAGGTGG 1 chr3:12933588-12933668 ( 36) GTGGGTGC 1 chr1:92407280-92407360 ( 8) GGAGGCGG 1 chr1:116694910-116694990 ( 36) GGAGGCGG 1 chr5:139127569-139127649 ( 23) GGAGGCGG 1 chr5:102594340-102594420 ( 63) GGAGGCGG 1 chr19:44174375-44174455 ( 30) GTGGGCGC 1 chr1:112297736-112297816 ( 58) GGAGGCGG 1 chr10:100227018-10022709 ( 38) GGAGGCGT 1 chr6:80487814-80487894 ( 28) GGAGGAGG 1 chr5:138609394-138609474 ( 72) GTGAGCGG 1 chr16:88701338-88701418 ( 56) GGGGGCGC 1 chr2:30453604-30453684 ( 52) GTATGTGT 1 chr1:205558020-205558100 ( 11) GGGTGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.10074 E= 2.0e-085 -1385 -1385 161 -1385 -1385 -1385 2 189 -121 -1385 149 -1385 -480 -1385 158 -374 -1385 -1385 161 -1385 -71 76 -1385 104 -1385 -1385 161 -1385 -321 -349 114 34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 148 E= 2.0e-085 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.331081 0.668919 0.081081 0.000000 0.918919 0.000000 0.006757 0.000000 0.979730 0.013514 0.000000 0.000000 1.000000 0.000000 0.114865 0.513514 0.000000 0.371622 0.000000 0.000000 1.000000 0.000000 0.020270 0.027027 0.722973 0.229730 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGYGG MEME-1 regular expression -------------------------------------------------------------------------------- G[TG]GGG[CT]G[GT] -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CCRCCCAC MEME-2 width = 8 sites = 110 llr = 873 E-value = 6.0e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:5:::7: pos.-specific C 7a:aaa3a probability G ::5::::: matrix T 1:1::::: bits 2.5 2.2 2.0 1.7 * *** * Relative 1.5 * *** * Entropy 1.2 * ***** (11.5 bits) 1.0 * ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCAC consensus A A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:51945185-51945265 36 2.74e-05 caacaccgtc ccacccac gcatgagtaa chr11:94300488-94300568 23 2.74e-05 CGCGCCTTCT CCACCCAC GCACGGGCCT chr5:149026286-149026366 22 2.74e-05 CAGGTCATTA CCACCCAC GCAGCCCCAG chr1:202129776-202129856 15 2.74e-05 CTCCTTGCTG CCACCCAC GCACACCCCA chr1:244517205-244517285 49 2.74e-05 AAGCACTTCC CCACCCAC GCCTTCTCTG chr17:74525092-74525172 50 2.74e-05 CCCCCACCCC CCACCCAC GCAAAGGCGC chr20:55665909-55665989 14 2.74e-05 ccacacacct ccacccac acacacctcc chr17:79071259-79071339 39 2.74e-05 CCGGCACTGC CCACCCAC GCTGAGTCAG chr1:38800718-38800798 25 2.74e-05 CACTTCCTCA CCACCCAC TCCTTCCTTA chr17:21139384-21139464 38 2.74e-05 agccatccat ccacccac acccatccac chr2:172081887-172081967 50 2.74e-05 aatgagatag ccacccac caggatgact chr19:18117793-18117873 63 2.74e-05 ACCGCCCCCT CCACCCAC ACACCTCACT chr7:106504196-106504276 32 2.74e-05 TCCTCCCACT CCACCCAC CCCCAGGAAC chr19:56670608-56670688 38 2.74e-05 cacccctcat ccacccac gcattcttca chr8:103818686-103818766 50 2.74e-05 TCCGGCGTCC CCACCCAC CTCCGCCCTC chr7:76961391-76961471 22 2.74e-05 CATAAGAGTC CCACCCAC GCAGTTCACC chr3:197633074-197633154 53 2.74e-05 CCGCACTTGT CCACCCAC ACGTTTTACT chr7:2059320-2059400 9 2.74e-05 gccaccct ccacccac gcaaggccac chr7:100813265-100813345 60 2.74e-05 TCCACCTCCT CCACCCAC CACGGGTTGC chr11:65784907-65784987 36 2.74e-05 acccatccat ccacccac ctccttatcc chr1:225642696-225642776 52 2.74e-05 CTCTCCCACG CCACCCAC CCCTTATGTC chr2:65610156-65610236 15 2.74e-05 GCACAAGCCG CCACCCAC GCAGCCCGGT chr12:117020598-11702067 58 2.74e-05 TGCAGGGAAT CCACCCAC GCTTTTTCCT chr3:24535989-24536069 18 2.74e-05 GACACCCCCA CCACCCAC GCTCACCCGC chr9:132330434-132330514 17 2.74e-05 GCCCTGACCT CCACCCAC GCTCTACGAT chr20:54990373-54990453 24 2.74e-05 CCACCCCCAC CCACCCAC GCAGTACCAG chr19:47538929-47539009 23 2.74e-05 CTGACACCTC CCACCCAC GCCCCACTCC chr21:15824841-15824921 47 9.20e-05 AACCACACCC CCGCCCAC GCAGCCCCGG chr1:153599469-153599549 23 9.20e-05 CCACTCGCAT CCGCCCAC ACACACTCTA chr19:18544018-18544098 26 9.20e-05 GTCCCTGCTC CCGCCCAC GTTGCCTTCC chr7:139677200-139677280 34 9.20e-05 gattcaatta ccgcccac cagtttcctc chr20:49347777-49347857 36 9.20e-05 AGGAGGCAGC CCGCCCAC GCACCGCGCG chr21:46230875-46230955 30 9.20e-05 acccatgcac acacccac acatgcacac chr1:116694910-116694990 17 9.20e-05 CCCGCCGCCT CCGCCCAC GCTGGCCCTC chr8:27219340-27219420 23 9.20e-05 GCTCCGCTCC ACACCCAC ACACTGCTCT chr19:56159838-56159918 37 9.20e-05 GACGGTCCGC CCGCCCAC GCGAGTGCGG chr19:41035185-41035265 33 9.20e-05 AAGTCCCTGC CCGCCCAC GCCGACTCCG chr9:138333340-138333420 36 9.20e-05 gggttgtctt ccgcccac actcttggcc chr2:30453604-30453684 17 9.20e-05 TGCACACCGC CCGCCCAC ACCTTCTGCC chr15:27777595-27777675 30 9.20e-05 GGGGAAGGGC ACACCCAC GCATCCTCTT chr19:2384182-2384262 17 9.20e-05 GAATCATTCT CCGCCCAC GCAGCAGACA chr10:100227018-10022709 23 9.20e-05 ACTCTTCTGT CCGCCCAC TCACACAGGA chr17:63534141-63534221 41 9.20e-05 gcccaggcac acacccac acgcagccca chr10:98400842-98400922 54 9.20e-05 gtgcatgtAT ACACCCAC GCAAGCAAGT chr6:150588973-150589053 24 9.20e-05 TGCTGCATGC CCGCCCAC ACATCTTCAC chr1:211710702-211710782 32 9.20e-05 atacatgatc acacccac tcgcaccctc chr9:66458540-66458620 25 9.20e-05 GGCCTCCTTT CCGCCCAC GCTCCAGTCC chr13:113946514-11394659 23 9.20e-05 gcccccgctg ccgcccac gcccacggac chr14:106938290-10693837 44 9.20e-05 CCTCTCCAGA CCGCCCAC GTCCCAGCTG chr10:11837491-11837571 40 9.20e-05 acgcacccac acacccac acgcgcaccc chr6:28949482-28949562 41 9.20e-05 tatttcggcT CCGCCCAC GCCACTTAAA chr17:47439812-47439892 46 9.20e-05 TTCTCCCACT CCGCCCAC TGCCGGGAGC chr19:19250445-19250525 58 9.20e-05 ttgaggtgat ccgcccac gtcggcctcc chr2:47104816-47104896 26 9.20e-05 ccacgcccac acacccac accacacaca chr6:80487814-80487894 45 9.20e-05 GGACAGGGAG CCGCCCAC GCCGGGCTCC chr4:13658287-13658367 35 9.20e-05 TTTCTTTGCG CCGCCCAC GCCTTCTCCC chr3:130476755-130476835 23 9.20e-05 acacacaccc acacccac acccacacac chr2:240190906-240190986 11 9.20e-05 acacattcac acacccac atacattcac chr17:45307281-45307361 46 1.22e-04 TTCCAACAGG ACGCCCAC GTTTGACACG chrX:11359674-11359754 31 1.22e-04 TCCCACATGT ACGCCCAC GCCTGACCTC chr1:111162175-111162255 44 1.22e-04 GCGGCCGTCA ACGCCCAC GCAGCAGGGA chr19:36394736-36394816 44 1.22e-04 TCCTGTGCGC ACGCCCAC GCCGCAGCCC chr7:20278373-20278453 44 1.22e-04 TGTGACAGCT ACGCCCAC GCCCAGGCTA chr12:124997357-12499743 31 1.22e-04 AGGGACTCTC ACGCCCAC GCCTCTCGGC chr4:4675016-4675096 4 1.22e-04 GCC ACGCCCAC CCCATTCAGG chr10:11755313-11755393 35 1.22e-04 AGATAAAAGG ACGCCCAC GCATATTCCC chr1:31380579-31380659 27 1.22e-04 acgcccacac acgcccac acacAGGGTT chr12:105352347-10535242 19 1.22e-04 CAGCCCACGC ACGCCCAC TTCACCGCCT chr6:13274330-13274410 17 1.66e-04 CCTACAGCAC CCACCCCC GCCCGACGCC chr11:6411508-6411588 8 1.66e-04 AGAGTCC CCACCCCC GCAGCCCGTG chr15:31780977-31781057 37 1.66e-04 ATTCCCCTCT CCACCCCC GCACCTCTTC chr5:137822887-137822967 25 1.66e-04 AAAGTGTTTC CCACCCCC TCAGGCCCAC chr1:9335706-9335786 18 1.66e-04 TAAGAGGCCA CCACCCCC ACAACAGCTG chr19:36869966-36870046 57 1.66e-04 cgcccccgcg ccaccccc gcgcccATTG chr2:46524817-46524897 42 1.66e-04 TCACCTTTCT CCACCCCC GCCCCCGCAC chr5:176080531-176080611 14 1.82e-04 tcacacactg tcacccac agtcacaacc chr10:72237675-72237755 32 1.82e-04 GTGGGTGCGT TCACCCAC GTGCTCGCGG chr16:23739163-23739243 50 1.82e-04 CTCCAAGAGC TCACCCAC GCACAGAGCT chr20:55004675-55004755 27 1.82e-04 acacgccccc tcacccac gcacTCCGGC chr19:639524-639604 61 2.86e-04 TCTCACACTC CCGCCCCC GCAACCCGAG chr19:17535937-17536017 70 2.86e-04 GATGGGGTCT CCGCCCCC ACG chr6:99963905-99963985 48 2.86e-04 gcgcccggcT CCGCCCCC ACACCCCCGC chr14:66974808-66974888 26 2.86e-04 GTCCCCGAGT CCGCCCCC GCAACCTCCA chr10:134145533-13414561 36 2.86e-04 CACAACACGC ACACCCCC GCGCGCAGGC chr19:50836763-50836843 39 2.86e-04 GTGGCTGCGC CCGCCCCC GTCAGGGCGT chr1:202134852-202134932 19 2.86e-04 cccccgcccg ccgccccc gccTTTCAAA chr6:64282232-64282312 47 2.86e-04 GGGCGGGCCT CCGCCCCC GCCTGTCGGC chr8:144100440-144100520 24 2.86e-04 GGAGGATTGA CCGCCCCC GGCATATCAC chr22:19706633-19706713 41 2.86e-04 gccgctgccg ccgccccc gcggctgGAT chr1:46668930-46669010 44 2.86e-04 CGCCCTCCTc ccgccccc gcgccgcgcg chr2:204193597-204193677 25 2.86e-04 CCGCCCTCGG CCGCCCCC GCACTCCGCG chr22:29977151-29977231 10 2.86e-04 CCGGCTCGC CCGCCCCC TCACTCACCC chr12:6735935-6736015 26 2.86e-04 ccttccctaa ccgccccc gcaacacaag chr19:3812565-3812645 27 2.86e-04 AACCCTTAAC CCGCCCCC ACAACCGCGC chr12:49582261-49582341 37 3.13e-04 TCCCGTTCCC CCTCCCAC GTCCCCCAGC chr11:62313123-62313203 20 3.13e-04 GCTTAGCCCT CCTCCCAC GCCAAGCCCG chr2:191427977-191428057 14 3.13e-04 ggcccagcct cctcccac acaggcccag chr2:65267919-65267999 18 3.13e-04 TGCCCAGTCT CCTCCCAC GCAGGGTAAA chr2:177419304-177419384 46 3.41e-04 CCCCTCCTTA TCGCCCAC GCCACCATCA chr19:17850162-17850242 46 3.89e-04 GGTGACATTG ACGCCCCC GCAAAGGGGG chr20:4203202-4203282 23 3.89e-04 gatagaacat acgccccc gcctccctgc chr7:100253949-100254029 15 3.89e-04 TCCGCCGTAG ACGCCCCC GCTCATAGTG chr19:36132533-36132613 27 3.89e-04 CTCCTGCTCC ACGCCCCC GCAGTTACTC chr19:51568141-51568221 52 3.89e-04 CGCGGCTCCC ACGCCCCC TCCCCCTCCG chr6:37611852-37611932 48 4.32e-04 gcatcctgcc tcaccccc acgcatcctg chr19:18402460-18402540 4 4.74e-04 ccg cctccccc ctgctcctcg chr5:137800498-137800578 56 5.20e-04 CGACTCGCCC TCGCCCCC GCTCTGGGTC chr8:67351332-67351412 25 5.20e-04 CAGCTCTCAC TCGCCCCC GCGTCTGCTT chr10:94608904-94608984 18 5.62e-04 CTTTCCCCCT ACTCCCCC GCGCGGCCGC chr12:13080531-13080611 40 5.79e-04 tgctggcagg ccacacac tgcgcatgcT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:51945185-51945265 2.7e-05 35_[+2]_37 chr11:94300488-94300568 2.7e-05 22_[+2]_50 chr5:149026286-149026366 2.7e-05 21_[+2]_51 chr1:202129776-202129856 2.7e-05 14_[+2]_58 chr1:244517205-244517285 2.7e-05 48_[+2]_24 chr17:74525092-74525172 2.7e-05 49_[+2]_23 chr20:55665909-55665989 2.7e-05 13_[+2]_59 chr17:79071259-79071339 2.7e-05 38_[+2]_34 chr1:38800718-38800798 2.7e-05 24_[+2]_48 chr17:21139384-21139464 2.7e-05 37_[+2]_35 chr2:172081887-172081967 2.7e-05 49_[+2]_23 chr19:18117793-18117873 2.7e-05 62_[+2]_10 chr7:106504196-106504276 2.7e-05 31_[+2]_41 chr19:56670608-56670688 2.7e-05 37_[+2]_35 chr8:103818686-103818766 2.7e-05 49_[+2]_23 chr7:76961391-76961471 2.7e-05 21_[+2]_51 chr3:197633074-197633154 2.7e-05 52_[+2]_20 chr7:2059320-2059400 2.7e-05 8_[+2]_64 chr7:100813265-100813345 2.7e-05 59_[+2]_13 chr11:65784907-65784987 2.7e-05 35_[+2]_37 chr1:225642696-225642776 2.7e-05 51_[+2]_21 chr2:65610156-65610236 2.7e-05 14_[+2]_58 chr12:117020598-11702067 2.7e-05 57_[+2]_15 chr3:24535989-24536069 2.7e-05 17_[+2]_55 chr9:132330434-132330514 2.7e-05 16_[+2]_56 chr20:54990373-54990453 2.7e-05 23_[+2]_49 chr19:47538929-47539009 2.7e-05 22_[+2]_50 chr21:15824841-15824921 9.2e-05 46_[+2]_26 chr1:153599469-153599549 9.2e-05 22_[+2]_50 chr19:18544018-18544098 9.2e-05 25_[+2]_47 chr7:139677200-139677280 9.2e-05 33_[+2]_39 chr20:49347777-49347857 9.2e-05 35_[+2]_37 chr21:46230875-46230955 9.2e-05 29_[+2]_43 chr1:116694910-116694990 9.2e-05 16_[+2]_56 chr8:27219340-27219420 9.2e-05 22_[+2]_50 chr19:56159838-56159918 9.2e-05 36_[+2]_36 chr19:41035185-41035265 9.2e-05 32_[+2]_40 chr9:138333340-138333420 9.2e-05 35_[+2]_37 chr2:30453604-30453684 9.2e-05 16_[+2]_56 chr15:27777595-27777675 9.2e-05 29_[+2]_43 chr19:2384182-2384262 9.2e-05 16_[+2]_56 chr10:100227018-10022709 9.2e-05 22_[+2]_50 chr17:63534141-63534221 9.2e-05 40_[+2]_32 chr10:98400842-98400922 9.2e-05 53_[+2]_19 chr6:150588973-150589053 9.2e-05 23_[+2]_49 chr1:211710702-211710782 9.2e-05 31_[+2]_41 chr9:66458540-66458620 9.2e-05 24_[+2]_48 chr13:113946514-11394659 9.2e-05 22_[+2]_50 chr14:106938290-10693837 9.2e-05 43_[+2]_29 chr10:11837491-11837571 9.2e-05 39_[+2]_33 chr6:28949482-28949562 9.2e-05 40_[+2]_32 chr17:47439812-47439892 9.2e-05 45_[+2]_27 chr19:19250445-19250525 9.2e-05 57_[+2]_15 chr2:47104816-47104896 9.2e-05 25_[+2]_47 chr6:80487814-80487894 9.2e-05 44_[+2]_28 chr4:13658287-13658367 9.2e-05 34_[+2]_38 chr3:130476755-130476835 9.2e-05 22_[+2]_50 chr2:240190906-240190986 9.2e-05 10_[+2]_62 chr17:45307281-45307361 0.00012 45_[+2]_27 chrX:11359674-11359754 0.00012 30_[+2]_42 chr1:111162175-111162255 0.00012 43_[+2]_29 chr19:36394736-36394816 0.00012 43_[+2]_29 chr7:20278373-20278453 0.00012 43_[+2]_29 chr12:124997357-12499743 0.00012 30_[+2]_42 chr4:4675016-4675096 0.00012 3_[+2]_69 chr10:11755313-11755393 0.00012 34_[+2]_38 chr1:31380579-31380659 0.00012 26_[+2]_46 chr12:105352347-10535242 0.00012 18_[+2]_54 chr6:13274330-13274410 0.00017 16_[+2]_56 chr11:6411508-6411588 0.00017 7_[+2]_65 chr15:31780977-31781057 0.00017 36_[+2]_36 chr5:137822887-137822967 0.00017 24_[+2]_48 chr1:9335706-9335786 0.00017 17_[+2]_55 chr19:36869966-36870046 0.00017 56_[+2]_16 chr2:46524817-46524897 0.00017 41_[+2]_31 chr5:176080531-176080611 0.00018 13_[+2]_59 chr10:72237675-72237755 0.00018 31_[+2]_41 chr16:23739163-23739243 0.00018 49_[+2]_23 chr20:55004675-55004755 0.00018 26_[+2]_46 chr19:639524-639604 0.00029 60_[+2]_12 chr19:17535937-17536017 0.00029 69_[+2]_3 chr6:99963905-99963985 0.00029 47_[+2]_25 chr14:66974808-66974888 0.00029 25_[+2]_47 chr10:134145533-13414561 0.00029 35_[+2]_37 chr19:50836763-50836843 0.00029 38_[+2]_34 chr1:202134852-202134932 0.00029 18_[+2]_54 chr6:64282232-64282312 0.00029 46_[+2]_26 chr8:144100440-144100520 0.00029 23_[+2]_49 chr22:19706633-19706713 0.00029 40_[+2]_32 chr1:46668930-46669010 0.00029 43_[+2]_29 chr2:204193597-204193677 0.00029 24_[+2]_48 chr22:29977151-29977231 0.00029 9_[+2]_63 chr12:6735935-6736015 0.00029 25_[+2]_47 chr19:3812565-3812645 0.00029 26_[+2]_46 chr12:49582261-49582341 0.00031 36_[+2]_36 chr11:62313123-62313203 0.00031 19_[+2]_53 chr2:191427977-191428057 0.00031 13_[+2]_59 chr2:65267919-65267999 0.00031 17_[+2]_55 chr2:177419304-177419384 0.00034 45_[+2]_27 chr19:17850162-17850242 0.00039 45_[+2]_27 chr20:4203202-4203282 0.00039 22_[+2]_50 chr7:100253949-100254029 0.00039 14_[+2]_58 chr19:36132533-36132613 0.00039 26_[+2]_46 chr19:51568141-51568221 0.00039 51_[+2]_21 chr6:37611852-37611932 0.00043 47_[+2]_25 chr19:18402460-18402540 0.00047 3_[+2]_69 chr5:137800498-137800578 0.00052 55_[+2]_17 chr8:67351332-67351412 0.00052 24_[+2]_48 chr10:94608904-94608984 0.00056 17_[+2]_55 chr12:13080531-13080611 0.00058 39_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCRCCCAC width=8 seqs=110 chr19:51945185-51945265 ( 36) CCACCCAC 1 chr11:94300488-94300568 ( 23) CCACCCAC 1 chr5:149026286-149026366 ( 22) CCACCCAC 1 chr1:202129776-202129856 ( 15) CCACCCAC 1 chr1:244517205-244517285 ( 49) CCACCCAC 1 chr17:74525092-74525172 ( 50) CCACCCAC 1 chr20:55665909-55665989 ( 14) CCACCCAC 1 chr17:79071259-79071339 ( 39) CCACCCAC 1 chr1:38800718-38800798 ( 25) CCACCCAC 1 chr17:21139384-21139464 ( 38) CCACCCAC 1 chr2:172081887-172081967 ( 50) CCACCCAC 1 chr19:18117793-18117873 ( 63) CCACCCAC 1 chr7:106504196-106504276 ( 32) CCACCCAC 1 chr19:56670608-56670688 ( 38) CCACCCAC 1 chr8:103818686-103818766 ( 50) CCACCCAC 1 chr7:76961391-76961471 ( 22) CCACCCAC 1 chr3:197633074-197633154 ( 53) CCACCCAC 1 chr7:2059320-2059400 ( 9) CCACCCAC 1 chr7:100813265-100813345 ( 60) CCACCCAC 1 chr11:65784907-65784987 ( 36) CCACCCAC 1 chr1:225642696-225642776 ( 52) CCACCCAC 1 chr2:65610156-65610236 ( 15) CCACCCAC 1 chr12:117020598-11702067 ( 58) CCACCCAC 1 chr3:24535989-24536069 ( 18) CCACCCAC 1 chr9:132330434-132330514 ( 17) CCACCCAC 1 chr20:54990373-54990453 ( 24) CCACCCAC 1 chr19:47538929-47539009 ( 23) CCACCCAC 1 chr21:15824841-15824921 ( 47) CCGCCCAC 1 chr1:153599469-153599549 ( 23) CCGCCCAC 1 chr19:18544018-18544098 ( 26) CCGCCCAC 1 chr7:139677200-139677280 ( 34) CCGCCCAC 1 chr20:49347777-49347857 ( 36) CCGCCCAC 1 chr21:46230875-46230955 ( 30) ACACCCAC 1 chr1:116694910-116694990 ( 17) CCGCCCAC 1 chr8:27219340-27219420 ( 23) ACACCCAC 1 chr19:56159838-56159918 ( 37) CCGCCCAC 1 chr19:41035185-41035265 ( 33) CCGCCCAC 1 chr9:138333340-138333420 ( 36) CCGCCCAC 1 chr2:30453604-30453684 ( 17) CCGCCCAC 1 chr15:27777595-27777675 ( 30) ACACCCAC 1 chr19:2384182-2384262 ( 17) CCGCCCAC 1 chr10:100227018-10022709 ( 23) CCGCCCAC 1 chr17:63534141-63534221 ( 41) ACACCCAC 1 chr10:98400842-98400922 ( 54) ACACCCAC 1 chr6:150588973-150589053 ( 24) CCGCCCAC 1 chr1:211710702-211710782 ( 32) ACACCCAC 1 chr9:66458540-66458620 ( 25) CCGCCCAC 1 chr13:113946514-11394659 ( 23) CCGCCCAC 1 chr14:106938290-10693837 ( 44) CCGCCCAC 1 chr10:11837491-11837571 ( 40) ACACCCAC 1 chr6:28949482-28949562 ( 41) CCGCCCAC 1 chr17:47439812-47439892 ( 46) CCGCCCAC 1 chr19:19250445-19250525 ( 58) CCGCCCAC 1 chr2:47104816-47104896 ( 26) ACACCCAC 1 chr6:80487814-80487894 ( 45) CCGCCCAC 1 chr4:13658287-13658367 ( 35) CCGCCCAC 1 chr3:130476755-130476835 ( 23) ACACCCAC 1 chr2:240190906-240190986 ( 11) ACACCCAC 1 chr17:45307281-45307361 ( 46) ACGCCCAC 1 chrX:11359674-11359754 ( 31) ACGCCCAC 1 chr1:111162175-111162255 ( 44) ACGCCCAC 1 chr19:36394736-36394816 ( 44) ACGCCCAC 1 chr7:20278373-20278453 ( 44) ACGCCCAC 1 chr12:124997357-12499743 ( 31) ACGCCCAC 1 chr4:4675016-4675096 ( 4) ACGCCCAC 1 chr10:11755313-11755393 ( 35) ACGCCCAC 1 chr1:31380579-31380659 ( 27) ACGCCCAC 1 chr12:105352347-10535242 ( 19) ACGCCCAC 1 chr6:13274330-13274410 ( 17) CCACCCCC 1 chr11:6411508-6411588 ( 8) CCACCCCC 1 chr15:31780977-31781057 ( 37) CCACCCCC 1 chr5:137822887-137822967 ( 25) CCACCCCC 1 chr1:9335706-9335786 ( 18) CCACCCCC 1 chr19:36869966-36870046 ( 57) CCACCCCC 1 chr2:46524817-46524897 ( 42) CCACCCCC 1 chr5:176080531-176080611 ( 14) TCACCCAC 1 chr10:72237675-72237755 ( 32) TCACCCAC 1 chr16:23739163-23739243 ( 50) TCACCCAC 1 chr20:55004675-55004755 ( 27) TCACCCAC 1 chr19:639524-639604 ( 61) CCGCCCCC 1 chr19:17535937-17536017 ( 70) CCGCCCCC 1 chr6:99963905-99963985 ( 48) CCGCCCCC 1 chr14:66974808-66974888 ( 26) CCGCCCCC 1 chr10:134145533-13414561 ( 36) ACACCCCC 1 chr19:50836763-50836843 ( 39) CCGCCCCC 1 chr1:202134852-202134932 ( 19) CCGCCCCC 1 chr6:64282232-64282312 ( 47) CCGCCCCC 1 chr8:144100440-144100520 ( 24) CCGCCCCC 1 chr22:19706633-19706713 ( 41) CCGCCCCC 1 chr1:46668930-46669010 ( 44) CCGCCCCC 1 chr2:204193597-204193677 ( 25) CCGCCCCC 1 chr22:29977151-29977231 ( 10) CCGCCCCC 1 chr12:6735935-6736015 ( 26) CCGCCCCC 1 chr19:3812565-3812645 ( 27) CCGCCCCC 1 chr12:49582261-49582341 ( 37) CCTCCCAC 1 chr11:62313123-62313203 ( 20) CCTCCCAC 1 chr2:191427977-191428057 ( 14) CCTCCCAC 1 chr2:65267919-65267999 ( 18) CCTCCCAC 1 chr2:177419304-177419384 ( 46) TCGCCCAC 1 chr19:17850162-17850242 ( 46) ACGCCCCC 1 chr20:4203202-4203282 ( 23) ACGCCCCC 1 chr7:100253949-100254029 ( 15) ACGCCCCC 1 chr19:36132533-36132613 ( 27) ACGCCCCC 1 chr19:51568141-51568221 ( 52) ACGCCCCC 1 chr6:37611852-37611932 ( 48) TCACCCCC 1 chr19:18402460-18402540 ( 4) CCTCCCCC 1 chr5:137800498-137800578 ( 56) TCGCCCCC 1 chr8:67351332-67351412 ( 25) TCGCCCCC 1 chr10:94608904-94608984 ( 18) ACTCCCCC 1 chr12:13080531-13080611 ( 40) CCACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.57895 E= 6.0e-079 38 117 -1343 -131 -1343 172 -1343 -1343 130 -1343 56 -173 -1343 172 -1343 -1343 -437 171 -1343 -1343 -1343 172 -1343 -1343 191 -6 -1343 -1343 -1343 172 -1343 -1343 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 6.0e-079 0.245455 0.681818 0.000000 0.072727 0.000000 1.000000 0.000000 0.000000 0.463636 0.000000 0.481818 0.054545 0.000000 1.000000 0.000000 0.000000 0.009091 0.990909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.709091 0.290909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCCAC MEME-2 regular expression -------------------------------------------------------------------------------- [CA]C[GA]CCC[AC]C -------------------------------------------------------------------------------- Time 8.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAAAAWA MEME-3 width = 8 sites = 10 llr = 109 E-value = 7.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a99894a pos.-specific C :::::::: probability G :::::1:: matrix T 9:112:6: bits 2.5 * * 2.2 * * 2.0 **** * * 1.7 ****** * Relative 1.5 ******** Entropy 1.2 ******** (15.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAAAAATA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:27181013-27181093 65 1.45e-06 ctgtctctac taaaaata caaaatta chr6:28949482-28949562 55 1.45e-06 CCACGCCACT TAAAAATA AGGCTTAATG chr3:32538562-32538642 13 2.95e-06 GAAGTGTTTT TAAAAAAA GAAAACTCCT chr17:37213230-37213310 11 2.95e-06 CCTCTTTTTT TAAAAAAA GCGTGGGCGT chr1:19075143-19075223 71 4.34e-06 ggtgtgtgtT TAAATATA AT chr7:562158-562238 3 4.34e-06 GC TAAATATA CTCCCGCGTC chr22:19706633-19706713 6 8.57e-06 cggTC TATAAATA GGCGCTGCTc chr1:112135610-112135690 36 1.01e-05 GGAGAGAGAG AAAAAATA GAAACAAAAC chr19:16939845-16939925 48 1.30e-05 gtctgtgtgc taataaaa ctttattcag chr12:62650695-62650775 14 1.97e-05 TTACATAAGA TAAAAGAA TGAAAGGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27181013-27181093 1.4e-06 64_[+3]_8 chr6:28949482-28949562 1.4e-06 54_[+3]_18 chr3:32538562-32538642 2.9e-06 12_[+3]_60 chr17:37213230-37213310 2.9e-06 10_[+3]_62 chr1:19075143-19075223 4.3e-06 70_[+3]_2 chr7:562158-562238 4.3e-06 2_[+3]_70 chr22:19706633-19706713 8.6e-06 5_[+3]_67 chr1:112135610-112135690 1e-05 35_[+3]_37 chr19:16939845-16939925 1.3e-05 47_[+3]_25 chr12:62650695-62650775 2e-05 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAAAAWA width=8 seqs=10 chr6:27181013-27181093 ( 65) TAAAAATA 1 chr6:28949482-28949562 ( 55) TAAAAATA 1 chr3:32538562-32538642 ( 13) TAAAAAAA 1 chr17:37213230-37213310 ( 11) TAAAAAAA 1 chr1:19075143-19075223 ( 71) TAAATATA 1 chr7:562158-562238 ( 3) TAAATATA 1 chr22:19706633-19706713 ( 6) TATAAATA 1 chr1:112135610-112135690 ( 36) AAAAAATA 1 chr19:16939845-16939925 ( 48) TAATAAAA 1 chr12:62650695-62650775 ( 14) TAAAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 7.4e-001 -91 -997 -997 231 241 -997 -997 -997 226 -997 -997 -85 226 -997 -997 -85 209 -997 -997 14 226 -997 -171 -997 109 -997 -997 173 241 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.4e-001 0.100000 0.000000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.100000 0.800000 0.000000 0.000000 0.200000 0.900000 0.000000 0.100000 0.000000 0.400000 0.000000 0.000000 0.600000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAAWA MEME-3 regular expression -------------------------------------------------------------------------------- TAAA[AT]A[TA]A -------------------------------------------------------------------------------- Time 11.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TGHGKGGG MEME-4 width = 8 sites = 42 llr = 336 E-value = 1.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C ::3::::: probability G :a:a499a matrix T a:4:6:1: bits 2.5 * 2.2 * 2.0 * 1.7 ** * * Relative 1.5 ** * * Entropy 1.2 ** ***** (11.6 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGGG consensus C G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:79285368-79285448 31 2.25e-05 atgtgggtgg tgtgtggg tggtgtgtgt chr12:76538133-76538213 53 2.25e-05 tgtgggtggg tgtgtggg tgtATACATG chr16:88948787-88948867 19 2.25e-05 tatggctgtg tgtgtggg tgtggctgtg chr1:31367377-31367457 47 2.25e-05 tgtgggtgta tgtgtggg ctacgtgtgt chr11:71454687-71454767 12 2.25e-05 ttttcttaac tgtgtggg gccaagagat chr2:26468104-26468184 59 2.25e-05 tgtgtgggcg tgtgtggg CGTCGGCCTT chr5:180021850-180021930 1 2.25e-05 . tgtgtggg tgtgtgtggg chr17:75275877-75275957 9 4.59e-05 ACAAGCGG TGAGTGGG CGTGTGGGTG chr19:2169095-2169175 71 4.59e-05 TGGGCGGCGG TGAGTGGG CA chr1:19075143-19075223 27 4.59e-05 cgtgagggtg tgagtggg gtgtgtgcgt chr17:78954348-78954428 10 4.59e-05 gtgggtgtg tgagtggg tgggtgagtg chr11:64983412-64983492 58 4.59e-05 ggtgagcgag tgagtggg cggatgagtg chr16:84964035-84964115 42 4.59e-05 tgtatgggtg tgagtggg tgtgggtgag chr12:53229840-53229920 54 4.59e-05 GAAACAGTCA TGAGTGGG CCCTAGCCTC chr19:951647-951727 26 8.36e-05 CCCCGCTGGG TGCGTGGG CGCCTGGGAG chr1:26527739-26527819 6 8.36e-05 AGGGC TGCGTGGG AGAGCGAAGC chr9:14322757-14322837 34 8.36e-05 CGTGGGTGGG TGCGTGGG TAGCGGTGGG chr1:32014220-32014300 5 8.36e-05 cagc tgcgtggg tgcagcagca chr5:138609394-138609474 14 8.36e-05 AAAAAGGATA TGCGTGGG AAGCGCAAAA chr7:158768362-158768442 28 8.36e-05 ggaggggagg tgcgtggg tggagcacgg chr5:2137181-2137261 27 8.36e-05 GGGCATTGCG TGCGTGGG TGGACAGACG chr19:56159838-56159918 63 1.24e-04 GGGGGAGGGG TGTGGGGG CCCCGAAGGT chr8:11619736-11619816 14 1.24e-04 CGGGGGTGTG TGTGGGGG TTAGTTTTGC chr19:13229798-13229878 23 1.24e-04 AGTTACTTCG TGTGGGGG CGGATAGGAG chr16:85470459-85470539 37 1.24e-04 GGCCCGGGAC TGTGGGGG CGGGCTGGAG chr20:46008614-46008694 49 1.24e-04 ggaggatgaa tgtggggg tgagctatta chr1:245627750-245627830 22 1.24e-04 tgcgtgcgcg tgtggggg tgtgtgcccg chr19:17791174-17791254 69 1.67e-04 GGGGCGGGGA TGAGGGGG GTGC chr12:62650695-62650775 49 1.67e-04 TGAGTAAGAA TGAGGGGG TGGTAGGGTC chr8:144799060-144799140 33 1.79e-04 catgtaagcc tgtgtgtg tgtgcgtggg chr11:76400508-76400588 42 2.47e-04 gaagtcagac tgcggggg ccgaggaggg chr17:79386729-79386809 63 2.47e-04 ggcctcacct tgcggggg cagtgggtgg chr19:10981493-10981573 72 2.47e-04 AAATCGTCGG TGCGGGGG C chr19:10531852-10531932 42 2.47e-04 GGAATTCGGC TGCGGGGG CGTCTGGGAC chr13:115047197-11504727 71 2.47e-04 GTCCTCCGGT TGCGGGGG CG chr17:7210804-7210884 54 2.47e-04 GCTTGCGCAG TGCGGGGG TGGAGGGCGG chr19:47949426-47949506 60 2.47e-04 CAGACGGGCA TGCGGGGG CGGAAGAGAG chr13:76123830-76123910 30 2.94e-04 CTCCGGGCGG TGTGTTGG GAGGGCCCAG chr4:183110844-183110924 51 2.94e-04 TGTGGGTGTG TGTGTTGG GGGTGGTGGG chr16:53132930-53133010 58 3.86e-04 GGGTGGGAGG TGAGGGTG GCCGCTAGCA chr19:18117793-18117873 29 3.86e-04 CATCACGGGC TGAGGGTG ACCGTGTTTG chr7:107612175-107612255 49 6.23e-04 AGACAGGAAG TGTGTATG GAATAGAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:79285368-79285448 2.3e-05 30_[+4]_42 chr12:76538133-76538213 2.3e-05 52_[+4]_20 chr16:88948787-88948867 2.3e-05 18_[+4]_54 chr1:31367377-31367457 2.3e-05 46_[+4]_26 chr11:71454687-71454767 2.3e-05 11_[+4]_61 chr2:26468104-26468184 2.3e-05 58_[+4]_14 chr5:180021850-180021930 2.3e-05 [+4]_72 chr17:75275877-75275957 4.6e-05 8_[+4]_64 chr19:2169095-2169175 4.6e-05 70_[+4]_2 chr1:19075143-19075223 4.6e-05 26_[+4]_46 chr17:78954348-78954428 4.6e-05 9_[+4]_63 chr11:64983412-64983492 4.6e-05 57_[+4]_15 chr16:84964035-84964115 4.6e-05 41_[+4]_31 chr12:53229840-53229920 4.6e-05 53_[+4]_19 chr19:951647-951727 8.4e-05 25_[+4]_47 chr1:26527739-26527819 8.4e-05 5_[+4]_67 chr9:14322757-14322837 8.4e-05 33_[+4]_39 chr1:32014220-32014300 8.4e-05 4_[+4]_68 chr5:138609394-138609474 8.4e-05 13_[+4]_59 chr7:158768362-158768442 8.4e-05 27_[+4]_45 chr5:2137181-2137261 8.4e-05 26_[+4]_46 chr19:56159838-56159918 0.00012 62_[+4]_10 chr8:11619736-11619816 0.00012 13_[+4]_59 chr19:13229798-13229878 0.00012 22_[+4]_50 chr16:85470459-85470539 0.00012 36_[+4]_36 chr20:46008614-46008694 0.00012 48_[+4]_24 chr1:245627750-245627830 0.00012 21_[+4]_51 chr19:17791174-17791254 0.00017 68_[+4]_4 chr12:62650695-62650775 0.00017 48_[+4]_24 chr8:144799060-144799140 0.00018 32_[+4]_40 chr11:76400508-76400588 0.00025 41_[+4]_31 chr17:79386729-79386809 0.00025 62_[+4]_10 chr19:10981493-10981573 0.00025 71_[+4]_1 chr19:10531852-10531932 0.00025 41_[+4]_31 chr13:115047197-11504727 0.00025 70_[+4]_2 chr17:7210804-7210884 0.00025 53_[+4]_19 chr19:47949426-47949506 0.00025 59_[+4]_13 chr13:76123830-76123910 0.00029 29_[+4]_43 chr4:183110844-183110924 0.00029 50_[+4]_22 chr16:53132930-53133010 0.00039 57_[+4]_15 chr19:18117793-18117873 0.00039 28_[+4]_44 chr7:107612175-107612255 0.00062 48_[+4]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGHGKGGG width=8 seqs=42 chr15:79285368-79285448 ( 31) TGTGTGGG 1 chr12:76538133-76538213 ( 53) TGTGTGGG 1 chr16:88948787-88948867 ( 19) TGTGTGGG 1 chr1:31367377-31367457 ( 47) TGTGTGGG 1 chr11:71454687-71454767 ( 12) TGTGTGGG 1 chr2:26468104-26468184 ( 59) TGTGTGGG 1 chr5:180021850-180021930 ( 1) TGTGTGGG 1 chr17:75275877-75275957 ( 9) TGAGTGGG 1 chr19:2169095-2169175 ( 71) TGAGTGGG 1 chr1:19075143-19075223 ( 27) TGAGTGGG 1 chr17:78954348-78954428 ( 10) TGAGTGGG 1 chr11:64983412-64983492 ( 58) TGAGTGGG 1 chr16:84964035-84964115 ( 42) TGAGTGGG 1 chr12:53229840-53229920 ( 54) TGAGTGGG 1 chr19:951647-951727 ( 26) TGCGTGGG 1 chr1:26527739-26527819 ( 6) TGCGTGGG 1 chr9:14322757-14322837 ( 34) TGCGTGGG 1 chr1:32014220-32014300 ( 5) TGCGTGGG 1 chr5:138609394-138609474 ( 14) TGCGTGGG 1 chr7:158768362-158768442 ( 28) TGCGTGGG 1 chr5:2137181-2137261 ( 27) TGCGTGGG 1 chr19:56159838-56159918 ( 63) TGTGGGGG 1 chr8:11619736-11619816 ( 14) TGTGGGGG 1 chr19:13229798-13229878 ( 23) TGTGGGGG 1 chr16:85470459-85470539 ( 37) TGTGGGGG 1 chr20:46008614-46008694 ( 49) TGTGGGGG 1 chr1:245627750-245627830 ( 22) TGTGGGGG 1 chr19:17791174-17791254 ( 69) TGAGGGGG 1 chr12:62650695-62650775 ( 49) TGAGGGGG 1 chr8:144799060-144799140 ( 33) TGTGTGTG 1 chr11:76400508-76400588 ( 42) TGCGGGGG 1 chr17:79386729-79386809 ( 63) TGCGGGGG 1 chr19:10981493-10981573 ( 72) TGCGGGGG 1 chr19:10531852-10531932 ( 42) TGCGGGGG 1 chr13:115047197-11504727 ( 71) TGCGGGGG 1 chr17:7210804-7210884 ( 54) TGCGGGGG 1 chr19:47949426-47949506 ( 60) TGCGGGGG 1 chr13:76123830-76123910 ( 30) TGTGTTGG 1 chr4:183110844-183110924 ( 51) TGTGTTGG 1 chr16:53132930-53133010 ( 58) TGAGGGTG 1 chr19:18117793-18117873 ( 29) TGAGGGTG 1 chr7:107612175-107612255 ( 49) TGTGTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 1.2e-002 -1204 -1204 -1204 247 -1204 -1204 161 -1204 48 14 -1204 116 -1204 -1204 161 -1204 -1204 -1204 30 172 -298 -1204 150 -192 -1204 -1204 147 -93 -1204 -1204 161 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.2e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.261905 0.333333 0.000000 0.404762 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.404762 0.595238 0.023810 0.000000 0.928571 0.047619 0.000000 0.000000 0.904762 0.095238 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGHGKGGG MEME-4 regular expression -------------------------------------------------------------------------------- TG[TCA]G[TG]GGG -------------------------------------------------------------------------------- Time 15.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-5 width = 8 sites = 24 llr = 211 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :21::3:: pos.-specific C ::2::::: probability G a18:9:a: matrix T :7:a17:a bits 2.5 * * 2.2 * * 2.0 * * 1.7 * * ** Relative 1.5 * * *** Entropy 1.2 ** ***** (12.7 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:79285368-79285448 10 1.24e-05 gtgggtggt gtgtgtgt gccatgtggg chr12:76538133-76538213 28 1.24e-05 atgtgtgtgt gtgtgtgt gtgtgtgtgt chr16:88948787-88948867 34 1.24e-05 gggtgtggct gtgtgtgt atggctgtgt chr10:98400842-98400922 20 1.24e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtgt chr1:19075143-19075223 62 1.24e-05 tgggcgtgag gtgtgtgt TTAAATATAA chr1:31367377-31367457 18 1.24e-05 gcgtggatga gtgtgtgt gggtgagagt chr8:144799060-144799140 10 1.24e-05 tgtatctgt gtgtgtgt gtgagcatgt chr2:26468104-26468184 32 1.24e-05 gtgggggtgt gtgtgtgt gtgtgggtgt chr5:180021850-180021930 20 1.24e-05 gtgtgtgggg gtgtgtgt gggtgtgtga chr16:84964035-84964115 21 2.53e-05 gggtgagtgg gtgtgagt gagtgtatgg chr17:78954348-78954428 71 3.82e-05 gtcagtgaat gagtgtgt ga chr12:57483731-57483811 49 3.82e-05 ACCACTGTGG GAGTGTGT GTGGGCGGAA chr19:18117793-18117873 40 4.51e-05 GAGGGTGACC GTGTTTGT TTATGACCGC chr19:16939845-16939925 38 5.66e-05 gcgtgggcgt gtctgtgt gctaataaaa chr1:245627750-245627830 5 6.37e-05 gtgt gtatgtgt gcgtgcgcgt chr19:2169095-2169175 15 7.71e-05 TCTCATTAAT GAGTGAGT ACATGTTCCG chr11:64983412-64983492 71 7.71e-05 gtgggcggat gagtgagt gg chr20:4203202-4203282 51 1.19e-04 cacatctcct gtctgagt cactgttttc chr17:7210804-7210884 34 1.19e-04 GAGATGGGTA GGGTGTGT GCGCTTGCGC chr9:14322757-14322837 58 1.51e-04 TGGGGCTCTG GTCTTTGT GCGGCCGCAT chr1:39581065-39581145 40 1.63e-04 tctggcttga gtatttgt gtgggtgggt chr17:40705584-40705664 51 1.86e-04 GAGGATTGAT GGGTGAGT GGTAGGGAGT chr1:244517205-244517285 18 1.86e-04 CTCCTAGCCA GGGTGAGT CATGTCAATC chr1:205558020-205558100 51 2.06e-04 CTCAGTACCA GACTGAGT CACTGGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:79285368-79285448 1.2e-05 9_[+5]_63 chr12:76538133-76538213 1.2e-05 27_[+5]_45 chr16:88948787-88948867 1.2e-05 33_[+5]_39 chr10:98400842-98400922 1.2e-05 19_[+5]_53 chr1:19075143-19075223 1.2e-05 61_[+5]_11 chr1:31367377-31367457 1.2e-05 17_[+5]_55 chr8:144799060-144799140 1.2e-05 9_[+5]_63 chr2:26468104-26468184 1.2e-05 31_[+5]_41 chr5:180021850-180021930 1.2e-05 19_[+5]_53 chr16:84964035-84964115 2.5e-05 20_[+5]_52 chr17:78954348-78954428 3.8e-05 70_[+5]_2 chr12:57483731-57483811 3.8e-05 48_[+5]_24 chr19:18117793-18117873 4.5e-05 39_[+5]_33 chr19:16939845-16939925 5.7e-05 37_[+5]_35 chr1:245627750-245627830 6.4e-05 4_[+5]_68 chr19:2169095-2169175 7.7e-05 14_[+5]_58 chr11:64983412-64983492 7.7e-05 70_[+5]_2 chr20:4203202-4203282 0.00012 50_[+5]_22 chr17:7210804-7210884 0.00012 33_[+5]_39 chr9:14322757-14322837 0.00015 57_[+5]_15 chr1:39581065-39581145 0.00016 39_[+5]_33 chr17:40705584-40705664 0.00019 50_[+5]_22 chr1:244517205-244517285 0.00019 17_[+5]_55 chr1:205558020-205558100 0.00021 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=24 chr15:79285368-79285448 ( 10) GTGTGTGT 1 chr12:76538133-76538213 ( 28) GTGTGTGT 1 chr16:88948787-88948867 ( 34) GTGTGTGT 1 chr10:98400842-98400922 ( 20) GTGTGTGT 1 chr1:19075143-19075223 ( 62) GTGTGTGT 1 chr1:31367377-31367457 ( 18) GTGTGTGT 1 chr8:144799060-144799140 ( 10) GTGTGTGT 1 chr2:26468104-26468184 ( 32) GTGTGTGT 1 chr5:180021850-180021930 ( 20) GTGTGTGT 1 chr16:84964035-84964115 ( 21) GTGTGAGT 1 chr17:78954348-78954428 ( 71) GAGTGTGT 1 chr12:57483731-57483811 ( 49) GAGTGTGT 1 chr19:18117793-18117873 ( 40) GTGTTTGT 1 chr19:16939845-16939925 ( 38) GTCTGTGT 1 chr1:245627750-245627830 ( 5) GTATGTGT 1 chr19:2169095-2169175 ( 15) GAGTGAGT 1 chr11:64983412-64983492 ( 71) GAGTGAGT 1 chr20:4203202-4203282 ( 51) GTCTGAGT 1 chr17:7210804-7210884 ( 34) GGGTGTGT 1 chr9:14322757-14322837 ( 58) GTCTTTGT 1 chr1:39581065-39581145 ( 40) GTATTTGT 1 chr17:40705584-40705664 ( 51) GGGTGAGT 1 chr1:244517205-244517285 ( 18) GGGTGAGT 1 chr1:205558020-205558100 ( 51) GACTGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.1e+002 -1123 -1123 161 -1123 15 -1123 -139 188 -117 -86 119 -1123 -1123 -1123 -1123 247 -1123 -1123 142 -53 63 -1123 -1123 197 -1123 -1123 161 -1123 -1123 -1123 -1123 247 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.1e+002 0.000000 0.000000 1.000000 0.000000 0.208333 0.000000 0.125000 0.666667 0.083333 0.166667 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.291667 0.000000 0.000000 0.708333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 regular expression -------------------------------------------------------------------------------- G[TA]GTG[TA]GT -------------------------------------------------------------------------------- Time 18.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:112297736-112297816 3.18e-01 80 chr2:240190906-240190986 3.88e-01 10_[+2(9.20e-05)]_28_[+2(9.20e-05)]_\ 8_[+2(9.20e-05)]_10 chr19:47538929-47539009 5.01e-04 22_[+2(2.74e-05)]_50 chr19:47949426-47949506 3.63e-02 80 chr3:130476755-130476835 4.39e-01 [+2(9.20e-05)]_8_[+2(9.20e-05)]_4_\ [+2(9.20e-05)]_2_[+2(9.20e-05)]_18_[+2(9.20e-05)]_8 chr12:105352347-10535242 4.66e-01 80 chr1:31380579-31380659 6.82e-02 80 chr19:3812565-3812645 2.57e-01 80 chr21:38823898-38823978 1.49e-01 80 chr22:19715111-19715191 6.70e-02 80 chr1:245627750-245627830 5.79e-05 4_[+5(6.37e-05)]_30_[+5(1.24e-05)]_\ 30 chr12:57483731-57483811 2.86e-05 50_[+5(1.24e-05)]_22 chr1:38022476-38022556 8.00e-03 80 chr20:54990373-54990453 1.04e-01 19_[+2(2.74e-05)]_53 chr22:21792465-21792545 2.59e-02 80 chr9:132330434-132330514 2.11e-01 16_[+2(2.74e-05)]_56 chr5:180021850-180021930 7.94e-05 [+4(2.25e-05)]_2_[+4(2.25e-05)]_1_\ [+5(1.24e-05)]_17_[+4(2.25e-05)]_[+4(2.25e-05)]_20 chr5:2137181-2137261 2.51e-03 29_[+1(4.08e-05)]_24_[+1(4.08e-05)]_\ 11 chr10:29086215-29086295 2.14e-02 80 chr2:26468104-26468184 3.85e-05 27_[+5(1.24e-05)]_[+5(1.24e-05)]_2_\ [+5(1.24e-05)]_5_[+4(2.25e-05)]_14 chr4:13658287-13658367 7.47e-03 34_[+2(9.20e-05)]_38 chr6:80487814-80487894 1.02e-01 44_[+2(9.20e-05)]_28 chr3:24535989-24536069 1.46e-01 17_[+2(2.74e-05)]_55 chr2:47104816-47104896 4.39e-01 11_[+2(9.20e-05)]_6_[+2(9.20e-05)]_\ 7_[+2(9.20e-05)]_2_[+2(9.20e-05)]_22 chr19:7985864-7985944 2.84e-02 34_[+4(8.36e-05)]_38 chr17:7210804-7210884 4.49e-03 80 chr20:55004675-55004755 4.78e-01 80 chr12:53229840-53229920 1.27e-02 53_[+4(4.59e-05)]_19 chr16:2186175-2186255 6.16e-03 39_[+4(8.36e-05)]_33 chr20:46008614-46008694 6.46e-03 80 chr7:158768362-158768442 8.84e-03 4_[+1(4.08e-05)]_18_[+1(4.08e-05)]_\ 18_[+1(4.08e-05)]_16 chr19:19250445-19250525 2.63e-01 57_[+2(9.20e-05)]_15 chr10:11755313-11755393 6.18e-02 80 chr16:85470459-85470539 6.39e-03 80 chr1:226831021-226831101 3.12e-01 80 chr3:12933588-12933668 1.28e-02 32_[+4(8.36e-05)]_40 chr19:44174375-44174455 3.67e-03 26_[+4(8.36e-05)]_46 chr17:47439812-47439892 3.60e-01 45_[+2(9.20e-05)]_27 chr8:144799060-144799140 5.79e-05 7_[+5(1.24e-05)]_18_[+5(1.24e-05)]_\ 1_[+4(8.36e-05)]_[+4(2.25e-05)]_22 chr8:22516304-22516384 1.30e-01 80 chr17:37213230-37213310 5.34e-04 10_[+3(2.95e-06)]_62 chr8:96080040-96080120 5.45e-02 80 chr9:130698162-130698242 9.48e-01 80 chr12:117020598-11702067 7.23e-02 57_[+2(2.74e-05)]_15 chr16:84964035-84964115 4.53e-05 20_[+5(2.53e-05)]_10_[+5(2.53e-05)]_\ 9_[+4(4.59e-05)]_2_[+4(2.25e-05)]_7 chr1:93317949-93318029 4.98e-02 80 chr6:28949482-28949562 6.42e-04 40_[+2(9.20e-05)]_6_[+3(1.45e-06)]_\ 18 chr10:11837491-11837571 4.35e-01 19_[+2(9.20e-05)]_12_[+2(9.20e-05)]_\ 12_[+2(9.20e-05)]_13 chr17:73266790-73266870 2.19e-03 53_[+1(4.08e-05)]_19 chr17:6478741-6478821 1.84e-02 80 chr4:4675016-4675096 4.89e-01 80 chr7:562158-562238 2.02e-04 2_[+3(4.34e-06)]_70 chr2:48834857-48834937 1.38e-03 48_[+1(4.08e-05)]_24 chr12:6735935-6736015 1.36e-01 80 chr19:13229798-13229878 1.26e-02 80 chr15:99968008-99968088 7.60e-02 22_[+1(4.08e-05)]_4_[+1(4.08e-05)]_\ 4_[+1(4.08e-05)]_4_[+1(4.08e-05)]_14 chr16:88701338-88701418 1.52e-01 80 chr2:65610156-65610236 3.69e-02 14_[+2(2.74e-05)]_58 chr14:106938290-10693837 4.39e-01 43_[+2(9.20e-05)]_29 chr19:51568141-51568221 1.86e-02 80 chr12:124997357-12499743 9.87e-02 80 chr1:225642696-225642776 1.19e-01 51_[+2(2.74e-05)]_21 chr11:65784907-65784987 2.53e-01 35_[+2(2.74e-05)]_37 chr1:9686705-9686785 1.87e-01 80 chr11:64983412-64983492 2.16e-04 12_[+1(4.08e-05)]_9_[+4(4.59e-05)]_\ 20_[+4(4.59e-05)]_5_[+5(7.71e-05)]_2 chr13:113946514-11394659 3.81e-01 22_[+2(9.20e-05)]_50 chr7:100813265-100813345 1.40e-02 59_[+2(2.74e-05)]_13 chr9:66458540-66458620 2.82e-01 24_[+2(9.20e-05)]_48 chr6:37611852-37611932 7.30e-01 80 chr5:138609394-138609474 1.75e-02 13_[+4(8.36e-05)]_59 chr12:62650695-62650775 1.37e-04 13_[+3(1.97e-05)]_59 chr7:2059320-2059400 1.37e-01 8_[+2(2.74e-05)]_64 chr16:517488-517568 1.42e-01 80 chr22:29977151-29977231 1.50e-02 80 chr1:211710702-211710782 3.38e-01 31_[+2(9.20e-05)]_41 chr11:93869659-93869739 2.59e-01 80 chr19:17791174-17791254 1.01e-03 7_[+3(5.82e-05)]_65 chr21:19192083-19192163 7.90e-01 80 chr1:11741465-11741545 7.45e-01 80 chr1:112135610-112135690 7.49e-03 35_[+3(1.01e-05)]_37 chr3:197633074-197633154 8.48e-05 25_[+1(4.08e-05)]_19_[+2(2.74e-05)]_\ 20 chr7:20278373-20278453 3.76e-01 80 chr8:67351332-67351412 4.59e-01 80 chr17:79127254-79127334 3.18e-04 21_[+4(8.36e-05)]_51 chr7:76961391-76961471 6.25e-02 21_[+2(2.74e-05)]_51 chr2:204193597-204193677 5.05e-02 80 chr22:19709860-19709940 3.21e-02 80 chr2:177419304-177419384 4.94e-01 80 chr1:46668930-46669010 8.11e-02 80 chr19:49867250-49867330 3.44e-01 80 chr5:137800498-137800578 3.51e-02 80 chr8:103818686-103818766 1.29e-01 49_[+2(2.74e-05)]_23 chr5:180615116-180615196 2.45e-01 80 chr17:78954348-78954428 7.81e-06 6_[+5(2.53e-05)]_10_[+1(4.08e-05)]_\ 38_[+5(3.82e-05)]_2 chr6:150588973-150589053 3.21e-01 23_[+2(9.20e-05)]_49 chr19:36394736-36394816 1.33e-02 80 chr3:171178161-171178241 8.91e-02 80 chr19:56670608-56670688 2.08e-01 37_[+2(2.74e-05)]_35 chr2:46524817-46524897 5.44e-01 80 chr13:115047197-11504727 8.07e-02 80 chr19:16939845-16939925 5.14e-05 37_[+5(5.66e-05)]_2_[+3(1.30e-05)]_\ 25 chr11:20515062-20515142 2.35e-03 56_[+1(4.08e-05)]_16 chr1:111162175-111162255 1.47e-01 80 chr11:71454687-71454767 8.64e-04 11_[+4(2.25e-05)]_61 chr2:65267919-65267999 5.08e-01 80 chr12:57480400-57480480 1.40e-01 80 chr7:65446068-65446148 6.93e-05 15_[+4(2.25e-05)]_57 chr7:107612175-107612255 2.31e-04 26_[+1(4.08e-05)]_46 chr14:96011092-96011172 2.32e-02 33_[+1(4.08e-05)]_39 chr1:31367377-31367457 5.79e-05 17_[+5(1.24e-05)]_9_[+4(2.25e-05)]_\ 4_[+4(2.25e-05)]_4_[+5(1.24e-05)]_2_[+5(1.24e-05)]_4 chr19:10531852-10531932 9.31e-02 80 chrX:11359674-11359754 2.77e-02 80 chr19:10530941-10531021 5.76e-01 80 chr22:19713029-19713109 2.45e-02 80 chr6:31367736-31367816 8.31e-02 80 chr2:3522776-3522856 8.25e-01 80 chr2:191427977-191428057 1.75e-01 80 chr7:106504196-106504276 7.71e-02 31_[+2(2.74e-05)]_41 chr1:19075143-19075223 1.88e-07 4_[+4(4.59e-05)]_11_[+5(2.53e-05)]_\ 8_[+4(8.36e-05)]_14_[+5(1.24e-05)]_1_[+3(4.34e-06)]_2 chr19:18117793-18117873 2.88e-04 39_[+5(4.51e-05)]_15_[+2(2.74e-05)]_\ 10 chr19:2169095-2169175 2.78e-04 14_[+5(7.71e-05)]_48_[+4(4.59e-05)]_\ 2 chr19:36132533-36132613 2.03e-02 80 chr10:98400842-98400922 2.18e-05 1_[+5(1.24e-05)]_[+5(1.24e-05)]_\ [+5(1.24e-05)]_[+5(1.24e-05)]_20_[+2(9.20e-05)]_19 chr8:145016711-145016791 6.49e-01 80 chr5:131997143-131997223 7.34e-02 80 chr2:241190865-241190945 7.91e-01 80 chr17:63534141-63534221 3.29e-01 40_[+2(9.20e-05)]_32 chr2:85147394-85147474 9.91e-04 29_[+1(4.08e-05)]_43 chr16:23739163-23739243 5.45e-01 80 chr5:132298407-132298487 2.69e-01 80 chr1:118148172-118148252 1.15e-01 80 chr14:53258218-53258298 9.49e-01 80 chr22:19706633-19706713 9.39e-03 5_[+3(8.57e-06)]_67 chr2:172081887-172081967 5.40e-02 49_[+2(2.74e-05)]_23 chr17:21139384-21139464 2.38e-01 9_[+2(2.74e-05)]_20_[+2(2.74e-05)]_\ 35 chr10:75668795-75668875 2.80e-01 80 chr6:84140826-84140906 2.36e-01 80 chr10:100227018-10022709 9.20e-03 22_[+2(9.20e-05)]_50 chr1:38800718-38800798 2.18e-01 24_[+2(2.74e-05)]_48 chr19:2384182-2384262 1.05e-01 16_[+2(9.20e-05)]_56 chr8:144100440-144100520 3.70e-01 80 chr6:147517796-147517876 1.47e-02 80 chr6:27181013-27181093 2.91e-02 64_[+3(1.45e-06)]_8 chr9:140330572-140330652 2.05e-01 80 chr19:6199593-6199673 7.76e-01 80 chr2:113470920-113471000 4.56e-02 80 chr4:183110844-183110924 6.99e-05 45_[+5(1.24e-05)]_27 chr9:77643441-77643521 3.38e-01 80 chr17:79071259-79071339 1.52e-02 15_[+2(9.20e-05)]_15_[+2(2.74e-05)]_\ 34 chr8:11619736-11619816 2.36e-06 8_[+5(1.24e-05)]_15_[+3(4.92e-05)]_\ 41 chr20:55665909-55665989 2.57e-01 13_[+2(2.74e-05)]_8_[+2(9.20e-05)]_\ 8_[+2(9.20e-05)]_8_[+2(9.20e-05)]_11 chr19:45746550-45746630 7.19e-02 80 chr10:27389405-27389485 9.84e-01 80 chr6:150591047-150591127 3.07e-02 80 chr12:13080531-13080611 6.62e-01 80 chr10:94608904-94608984 8.51e-02 80 chr11:62313123-62313203 6.49e-01 80 chr12:55806072-55806152 4.64e-02 80 chr3:45593009-45593089 2.17e-02 30_[+1(4.08e-05)]_42 chr17:81031357-81031437 7.67e-01 80 chr15:27777595-27777675 4.69e-02 29_[+2(9.20e-05)]_43 chr12:57674153-57674233 2.33e-02 30_[+1(4.08e-05)]_42 chr17:45307281-45307361 3.77e-01 80 chr9:34665589-34665669 8.94e-01 80 chr6:84762005-84762085 1.94e-03 46_[+1(4.08e-05)]_26 chr19:13274012-13274092 3.24e-01 80 chr10:72237675-72237755 9.86e-03 80 chr17:43330155-43330235 1.21e-03 52_[+1(4.08e-05)]_20 chr16:88948787-88948867 5.79e-05 15_[+5(1.24e-05)]_10_[+5(1.24e-05)]_\ 7_[+4(2.25e-05)]_10_[+4(8.36e-05)]_6 chr2:30453604-30453684 6.03e-04 16_[+2(9.20e-05)]_27_[+5(6.37e-05)]_\ 21 chr17:75275877-75275957 7.95e-04 8_[+4(4.59e-05)]_3_[+1(4.08e-05)]_\ 53 chr19:36869966-36870046 3.80e-01 80 chr1:165567418-165567498 1.51e-01 80 chr17:74525092-74525172 2.10e-01 49_[+2(2.74e-05)]_23 chr6:64282232-64282312 5.40e-02 80 chr19:10981493-10981573 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chr22:41048206-41048286 3.44e-04 21_[+4(4.59e-05)]_51 chr20:49347777-49347857 5.85e-03 35_[+2(9.20e-05)]_37 chr11:110300552-11030063 6.11e-02 80 chr5:176935978-176936058 2.66e-02 80 chr20:4203202-4203282 4.76e-03 80 chr5:89825410-89825490 1.44e-01 80 chr7:139677200-139677280 2.32e-03 33_[+2(9.20e-05)]_39 chr12:49582261-49582341 4.02e-01 80 chr14:66974808-66974888 1.34e-01 80 chr6:99963905-99963985 6.17e-01 80 chr19:18544018-18544098 2.73e-05 6_[+4(4.59e-05)]_11_[+2(9.20e-05)]_\ 47 chr11:94300488-94300568 2.59e-02 22_[+2(2.74e-05)]_50 chr15:31780977-31781057 9.92e-03 80 chr11:6411508-6411588 4.38e-02 80 chr1:26527739-26527819 1.30e-02 5_[+4(8.36e-05)]_67 chr3:32538562-32538642 1.29e-03 12_[+3(2.95e-06)]_60 chr7:642238-642318 7.72e-03 46_[+1(4.08e-05)]_26 chr19:951647-951727 1.05e-02 25_[+4(8.36e-05)]_47 chr19:17535937-17536017 1.71e-02 80 chr13:76123830-76123910 9.88e-03 80 chr1:153599469-153599549 3.46e-01 22_[+2(9.20e-05)]_50 chr8:681366-681446 1.12e-01 80 chr19:1275949-1276029 1.62e-02 80 chr1:161360044-161360124 5.66e-02 80 chr18:12948088-12948168 1.18e-01 80 chr19:17850162-17850242 3.84e-03 80 chr9:126158324-126158404 1.33e-02 44_[+1(4.08e-05)]_28 chr1:44703868-44703948 9.42e-03 80 chr12:50236891-50236971 1.35e-01 80 chr6:13274330-13274410 2.06e-01 80 chr19:639524-639604 1.97e-01 80 chr19:51945185-51945265 4.39e-02 35_[+2(2.74e-05)]_37 chr1:92407280-92407360 4.37e-01 80 chr21:15824841-15824921 4.99e-02 46_[+2(9.20e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************