******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/E4F1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:1040938-1041018 1.0000 80 chrX:30766863-30766943 1.0000 80 chr4:87855833-87855913 1.0000 80 chr4:123843180-123843260 1.0000 80 chr1:11986489-11986569 1.0000 80 chr9:108320360-108320440 1.0000 80 chr2:167194579-167194659 1.0000 80 chr16:77714012-77714092 1.0000 80 chrX:135578895-135578975 1.0000 80 chr14:57857218-57857298 1.0000 80 chr17:7232785-7232865 1.0000 80 chrX:153639786-153639866 1.0000 80 chr4:77155599-77155679 1.0000 80 chr10:75173089-75173169 1.0000 80 chr4:123843388-123843468 1.0000 80 chr10:33346761-33346841 1.0000 80 chr10:115478864-11547894 1.0000 80 chr13:109387189-10938726 1.0000 80 chr1:46770494-46770574 1.0000 80 chr12:63226483-63226563 1.0000 80 chr15:59279826-59279906 1.0000 80 chr10:31607913-31607993 1.0000 80 chr2:101869305-101869385 1.0000 80 chr20:36322338-36322418 1.0000 80 chr6:88050086-88050166 1.0000 80 chr8:33370656-33370736 1.0000 80 chr14:36278501-36278581 1.0000 80 chr6:28183426-28183506 1.0000 80 chr7:66440354-66440434 1.0000 80 chr6:6657818-6657898 1.0000 80 chr17:4699355-4699435 1.0000 80 chr9:115983554-115983634 1.0000 80 chr9:101019299-101019379 1.0000 80 chr9:7799758-7799838 1.0000 80 chr12:7009225-7009305 1.0000 80 chr4:6711560-6711640 1.0000 80 chr3:15902839-15902919 1.0000 80 chr2:145115662-145115742 1.0000 80 chr20:2559307-2559387 1.0000 80 chr7:106717860-106717940 1.0000 80 chr4:142142031-142142111 1.0000 80 chr19:1272052-1272132 1.0000 80 chr2:120436742-120436822 1.0000 80 chr6:27572937-27573017 1.0000 80 chr17:62637705-62637785 1.0000 80 chr12:51327637-51327717 1.0000 80 chr20:30135108-30135188 1.0000 80 chr1:46002782-46002862 1.0000 80 chr16:67143805-67143885 1.0000 80 chr17:4046338-4046418 1.0000 80 chr10:3845700-3845780 1.0000 80 chr12:48577319-48577399 1.0000 80 chr14:96828468-96828548 1.0000 80 chr1:46039909-46039989 1.0000 80 chr20:5986638-5986718 1.0000 80 chr15:101142590-10114267 1.0000 80 chr1:77685093-77685173 1.0000 80 chr8:86019243-86019323 1.0000 80 chr8:41347995-41348075 1.0000 80 chr1:228045104-228045184 1.0000 80 chr1:10795190-10795270 1.0000 80 chr17:79519444-79519524 1.0000 80 chr1:87379997-87380077 1.0000 80 chr10:105127616-10512769 1.0000 80 chr3:133291964-133292044 1.0000 80 chr1:168335093-168335173 1.0000 80 chr11:107328509-10732858 1.0000 80 chr14:104029306-10402938 1.0000 80 chr1:171750309-171750389 1.0000 80 chr6:119214756-119214836 1.0000 80 chr6:112408711-112408791 1.0000 80 chr19:46850297-46850377 1.0000 80 chr2:205851510-205851590 1.0000 80 chr13:95248402-95248482 1.0000 80 chr3:43629043-43629123 1.0000 80 chr1:5916610-5916690 1.0000 80 chr3:129158801-129158881 1.0000 80 chr19:8226191-8226271 1.0000 80 chr15:36825467-36825547 1.0000 80 chr2:152252313-152252393 1.0000 80 chr3:180707493-180707573 1.0000 80 chrX:119737882-119737962 1.0000 80 chr14:75389901-75389981 1.0000 80 chr20:52492193-52492273 1.0000 80 chr3:174158776-174158856 1.0000 80 chr6:160825702-160825782 1.0000 80 chr11:47869480-47869560 1.0000 80 chr11:5612915-5612995 1.0000 80 chr15:43398285-43398365 1.0000 80 chr10:103892343-10389242 1.0000 80 chr3:99979766-99979846 1.0000 80 chr2:85788675-85788755 1.0000 80 chr18:54318501-54318581 1.0000 80 chr8:19675818-19675898 1.0000 80 chr13:26828036-26828116 1.0000 80 chr20:48967516-48967596 1.0000 80 chr16:70148132-70148212 1.0000 80 chr2:128568294-128568374 1.0000 80 chr17:3791838-3791918 1.0000 80 chr20:43485696-43485776 1.0000 80 chr12:49627791-49627871 1.0000 80 chr12:66037947-66038027 1.0000 80 chr16:47495049-47495129 1.0000 80 chr7:150775293-150775373 1.0000 80 chr15:72410706-72410786 1.0000 80 chr19:18263451-18263531 1.0000 80 chr10:27099513-27099593 1.0000 80 chr13:80055210-80055290 1.0000 80 chr2:172778722-172778802 1.0000 80 chr19:41339782-41339862 1.0000 80 chr5:175815036-175815116 1.0000 80 chr10:105881869-10588194 1.0000 80 chr7:74064619-74064699 1.0000 80 chr16:74402093-74402173 1.0000 80 chr1:86174095-86174175 1.0000 80 chr1:28475002-28475082 1.0000 80 chr5:96518951-96519031 1.0000 80 chr15:59280108-59280188 1.0000 80 chr16:89392549-89392629 1.0000 80 chr3:170445106-170445186 1.0000 80 chr19:48836322-48836402 1.0000 80 chr11:85956141-85956221 1.0000 80 chr11:66121418-66121498 1.0000 80 chr1:154245004-154245084 1.0000 80 chr20:49451479-49451559 1.0000 80 chr1:213228555-213228635 1.0000 80 chr16:15736982-15737062 1.0000 80 chr12:25348258-25348338 1.0000 80 chr12:51422144-51422224 1.0000 80 chr7:145481983-145482063 1.0000 80 chrX:129040072-129040152 1.0000 80 chr15:68072143-68072223 1.0000 80 chr12:1058929-1059009 1.0000 80 chr15:68072344-68072424 1.0000 80 chr6:30783336-30783416 1.0000 80 chr6:31368316-31368396 1.0000 80 chr10:120514479-12051455 1.0000 80 chr19:7745740-7745820 1.0000 80 chr6:26756691-26756771 1.0000 80 chr14:60558733-60558813 1.0000 80 chr3:171789836-171789916 1.0000 80 chr7:65570958-65571038 1.0000 80 chr16:85833153-85833233 1.0000 80 chr6:107780749-107780829 1.0000 80 chr4:56815541-56815621 1.0000 80 chr4:6675711-6675791 1.0000 80 chr8:11660034-11660114 1.0000 80 chr5:89704858-89704938 1.0000 80 chr1:111682828-111682908 1.0000 80 chr7:22862450-22862530 1.0000 80 chr3:41068162-41068242 1.0000 80 chr8:29120954-29121034 1.0000 80 chr1:234659443-234659523 1.0000 80 chrX:52950132-52950212 1.0000 80 chr20:44465595-44465675 1.0000 80 chr19:41370679-41370759 1.0000 80 chr11:62341344-62341424 1.0000 80 chr7:155437127-155437207 1.0000 80 chr9:100807815-100807895 1.0000 80 chr4:79550632-79550712 1.0000 80 chr1:211431730-211431810 1.0000 80 chr22:42177224-42177304 1.0000 80 chr19:44952691-44952771 1.0000 80 chr11:207560-207640 1.0000 80 chr4:88312482-88312562 1.0000 80 chr4:159593669-159593749 1.0000 80 chr7:65215690-65215770 1.0000 80 chrX:52950338-52950418 1.0000 80 chr11:11864255-11864335 1.0000 80 chr6:150188563-150188643 1.0000 80 chr5:159436372-159436452 1.0000 80 chr1:39491915-39491995 1.0000 80 chr3:141456815-141456895 1.0000 80 chr7:130692405-130692485 1.0000 80 chr1:169337006-169337086 1.0000 80 chr7:119590910-119590990 1.0000 80 chr9:33474019-33474099 1.0000 80 chr12:30848809-30848889 1.0000 80 chr22:42228928-42229008 1.0000 80 chr2:108363437-108363517 1.0000 80 chr6:35331258-35331338 1.0000 80 chr12:123518786-12351886 1.0000 80 chr12:6641867-6641947 1.0000 80 chr8:92082232-92082312 1.0000 80 chr17:56296567-56296647 1.0000 80 chr10:18948141-18948221 1.0000 80 chr14:21572527-21572607 1.0000 80 chr11:125772997-12577307 1.0000 80 chr10:33338994-33339074 1.0000 80 chr10:102133178-10213325 1.0000 80 chr1:38388513-38388593 1.0000 80 chr1:46050618-46050698 1.0000 80 chr10:72445450-72445530 1.0000 80 chr6:151773777-151773857 1.0000 80 chr12:53400010-53400090 1.0000 80 chr20:49536279-49536359 1.0000 80 chr2:223574268-223574348 1.0000 80 chr16:69760322-69760402 1.0000 80 chr11:66050050-66050130 1.0000 80 chr1:224180485-224180565 1.0000 80 chr8:22927871-22927951 1.0000 80 chr10:70314965-70315045 1.0000 80 chr17:56365-56445 1.0000 80 chr2:356516-356596 1.0000 80 chr4:169931834-169931914 1.0000 80 chr3:197466466-197466546 1.0000 80 chr6:27573144-27573224 1.0000 80 chr12:88535888-88535968 1.0000 80 chr12:53835379-53835459 1.0000 80 chr3:197754113-197754193 1.0000 80 chr9:80602076-80602156 1.0000 80 chr2:241500591-241500671 1.0000 80 chr4:142253815-142253895 1.0000 80 chr3:52719970-52720050 1.0000 80 chr16:70148362-70148442 1.0000 80 chr3:50359014-50359094 1.0000 80 chr17:7589647-7589727 1.0000 80 chrX:38660637-38660717 1.0000 80 chr6:166796532-166796612 1.0000 80 chr13:113377151-11337723 1.0000 80 chr3:85553610-85553690 1.0000 80 chr16:81130359-81130439 1.0000 80 chr2:32264836-32264916 1.0000 80 chr1:101491337-101491417 1.0000 80 chr17:79630452-79630532 1.0000 80 chr19:982490-982570 1.0000 80 chr20:247594-247674 1.0000 80 chr5:36152300-36152380 1.0000 80 chr9:19103039-19103119 1.0000 80 chr2:132301058-132301138 1.0000 80 chr3:179065524-179065604 1.0000 80 chr10:16859706-16859786 1.0000 80 chr4:111166807-111166887 1.0000 80 chr12:110856208-11085628 1.0000 80 chr19:46498415-46498495 1.0000 80 chr20:18488202-18488282 1.0000 80 chr7:150725331-150725411 1.0000 80 chr19:41082716-41082796 1.0000 80 chr19:47217205-47217285 1.0000 80 chr8:55047681-55047761 1.0000 80 chr5:34867419-34867499 1.0000 80 chrX:65948853-65948933 1.0000 80 chr19:52552058-52552138 1.0000 80 chr8:42645191-42645271 1.0000 80 chr22:19803106-19803186 1.0000 80 chr6:163148922-163149002 1.0000 80 chr19:59084817-59084897 1.0000 80 chr2:39351293-39351373 1.0000 80 chr20:56032461-56032541 1.0000 80 chr2:149402928-149403008 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_E4F1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/E4F1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.215 C 0.278 G 0.283 T 0.225 Background letter frequencies (from file dataset with add-one prior applied): A 0.215 C 0.278 G 0.283 T 0.225 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYCGTAAA MEME-1 width = 8 sites = 75 llr = 658 E-value = 1.1e-061 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::9a9 pos.-specific C :6a:1::: probability G 9::a11:1 matrix T :4::8::: bits 2.2 * 2.0 * 1.8 ** ** 1.6 * ** *** Relative 1.3 * ** *** Entropy 1.1 * ****** (12.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGTAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:141456815-141456895 30 1.38e-05 gtttaatgaa gccgtaaa gcaggacaca chr6:107780749-107780829 32 1.38e-05 AATGCGGCCT GCCGTAAA GACAGAGGCG chr10:120514479-12051455 19 1.38e-05 GGGAGAGGCA GCCGTAAA GCAGCGGCGC chr12:1058929-1059009 71 1.38e-05 TTCTGCGGCA GCCGTAAA GC chr1:86174095-86174175 31 1.38e-05 TGCTCGAATC GCCGTAAA GCTACGCTTT chr17:3791838-3791918 62 1.38e-05 cactaaggag gccgtaaa agtgagttgt chr16:70148132-70148212 31 1.38e-05 TTGCCCGGGG GCCGTAAA GCGCGGAAGG chrX:119737882-119737962 51 1.38e-05 TTGACTGAGA GCCGTAAA GCGCGGCTGG chr15:36825467-36825547 49 1.38e-05 AGGGGCTCAT GCCGTAAA GCATATGACC chr1:5916610-5916690 45 1.38e-05 tcctgaggct gccgtaaa caactgctgc chr10:105127616-10512769 29 1.38e-05 TCCTCCTACT GCCGTAAA TGGCCTACTA chr17:79519444-79519524 10 1.38e-05 GCGACCTCC GCCGTAAA GCGGTCGGCG chr1:77685093-77685173 40 1.38e-05 CGGAGGCAGT GCCGTAAA GTAGCGCTGC chr1:46002782-46002862 15 1.38e-05 TGCCGCTCTA GCCGTAAA GCACTATTTG chr20:30135108-30135188 39 1.38e-05 ATTTCACCGG GCCGTAAA GCGCGCTGGC chr17:62637705-62637785 42 1.38e-05 cagtgtagct gccgtaaa gctgccataa chr9:108320360-108320440 48 1.38e-05 TGCTGTGAGT GCCGTAAA GCGGAGCGGC chr4:87855833-87855913 42 1.38e-05 GCTTAATCTC GCCGTAAA GTGAAAGGGT chr17:1040938-1041018 52 1.38e-05 gCACATGAGT GCCGTAAA GCAAGGTACG chr19:47217205-47217285 21 2.50e-05 GCAGGATCTT GTCGTAAA GGCCGTAGAA chr10:72445450-72445530 37 2.50e-05 GAAACTCAAG GTCGTAAA CTGTGTGCTG chr19:44952691-44952771 65 2.50e-05 GGGCGATGGT GTCGTAAA TGCGCGTC chr9:100807815-100807895 39 2.50e-05 ccctttttct gtcgtaaa ccttcttcca chr4:6675711-6675791 43 2.50e-05 GACCGCAGGT GTCGTAAA AGGGCCGCAG chr20:49451479-49451559 49 2.50e-05 ctttacggct gtcgtaaa caatgctgct chr5:175815036-175815116 30 2.50e-05 TGTGACGAAG GTCGTAAA GAGACCCTTG chr19:41339782-41339862 2 2.50e-05 a gtcgtaaa atatgccgtt chr2:85788675-85788755 7 2.50e-05 AGCACT GTCGTAAA TACTACCCAC chr3:180707493-180707573 65 2.50e-05 CCGGAAAACT GTCGTAAA AGGGGACG chr20:5986638-5986718 49 2.50e-05 CGACGACGGT GTCGTAAA AGCGTCGCGA chr4:142142031-142142111 21 2.50e-05 AGGCGCTGCT GTCGTAAA AGGACGTCCG chr9:115983554-115983634 42 2.50e-05 CACCGCCGAC GTCGTAAA ATGCCGCGGC chr8:33370656-33370736 66 2.50e-05 ACGACGTATG GTCGTAAA GCAATAA chr6:88050086-88050166 47 2.50e-05 CCAGACAACT GTCGTAAA TTTTGTCCTT chr15:59279826-59279906 21 2.50e-05 TTTCCGAACT GTCGTAAA GAGCCCTAGT chr12:63226483-63226563 28 2.50e-05 CTTACAGCAT GTCGTAAA AATCCAAGAG chr14:57857218-57857298 33 2.50e-05 GCAGGGAAGT GTCGTAAA GCCAGGCCCA chrX:30766863-30766943 49 2.50e-05 ttacgccact gtcgtaaa ggagggagtg chr13:113377151-11337723 42 4.25e-05 acgtggctca gccggaaa ggcaggatga chr20:49536279-49536359 14 4.25e-05 AGTTCCAGAG GCCGGAAA GCAAGGTGTT chr17:56296567-56296647 50 4.25e-05 CCGCGACTGC GCCGGAAA GCGCGCCGCT chr12:123518786-12351886 58 4.25e-05 GGGACACAGT GCCGGAAA GCAATCTGAT chr16:85833153-85833233 14 4.25e-05 TCCAACGCCT GCCGGAAA GCAGCCCGGC chr12:25348258-25348338 6 4.25e-05 GGCGT GCCGGAAA GTGCGTGAGT chr9:7799758-7799838 50 4.25e-05 AAGGCAGAGC GCCGGAAA GCAGAATGCC chr16:81130359-81130439 6 5.65e-05 aacaa gtcggaaa gtcgtgaaag chr3:171789836-171789916 1 5.65e-05 . GTCGGAAA CTCATCCTTC chr2:149402928-149403008 48 7.48e-05 TGCTTACGCT GCCGTAAG GGGGCCTTGC chr2:32264836-32264916 34 7.48e-05 AACAGCTCCG GCCGTAAG TGACGGCTGT chr10:18948141-18948221 63 7.48e-05 GGCGTGGGTT GCCGTAAG TGCGCCGTCG chrX:52950132-52950212 16 7.48e-05 GGTTACCGAC GCCGTAAG CACTTCCTGC chr16:89392549-89392629 41 7.48e-05 AATAATCATG GCCGTAAG GCAGGGACGG chr20:48967516-48967596 29 7.48e-05 cggacctgat gccgtaag tgaaagcccg chr6:112408711-112408791 10 7.48e-05 TAGAGAGCT GCCGTAAG TCACGCTACT chr1:101491337-101491417 31 1.07e-04 CACCTACGGT GCCGCAAA ATGCTGGTGC chr11:62341344-62341424 10 1.07e-04 CTCGGCGCT GCCGCAAA GTAAGCCGCC chr10:31607913-31607993 47 1.07e-04 GCCCACGGTT GCCGCAAA CCGCCCGGTC chr4:56815541-56815621 63 1.31e-04 TAACAAAAAT GTCGCAAA GCGTAGGACG chr16:15736982-15737062 44 1.31e-04 caccgcccct gtcGCAAA ACCGACGCCC chr6:160825702-160825782 24 1.31e-04 gtcaagactt accgtaaa gcgacagtaa chr3:43629043-43629123 37 1.31e-04 AGGCAAGCTG ACCGTAAA GCACTGCTTC chr13:95248402-95248482 12 1.31e-04 AGTGCCTAGT ACCGTAAA GAGTATGGTC chr17:4046338-4046418 8 1.31e-04 GACCGCT GTCGCAAA GGCGCCGTCA chr11:107328509-10732858 32 1.39e-04 ACTTGTTGCC ATCGTAAA GCTAAGAAGC chr1:46039909-46039989 1 1.58e-04 . gccgtgaa ttccctagac chr7:65215690-65215770 4 1.72e-04 AAA GTCGTGAA AGCAGCAAGG chr1:111682828-111682908 17 1.72e-04 TCGCGAAAGT GTCGTGAA CGTGCTGCCG chr12:51422144-51422224 53 1.72e-04 TCTTTGACCT GTCGTGAA AAGAGAAGCA chr3:15902839-15902919 54 1.72e-04 atgagttaat gtcgtgaa agcacttGAG chr4:6711560-6711640 36 1.90e-04 TGGAGTCGCA GCCGTCAA CTCGCCCTCG chr17:4699355-4699435 27 1.90e-04 TTTCCCTTCT GCCGTCAA CCTCGGAGTA chrX:153639786-153639866 27 1.90e-04 TGGCCTCGCT GCCGTCAA GCGGCCCGTG chr1:46050618-46050698 43 2.16e-04 AACATTACCG GACGTAAA GCGTCTTCAG chr15:68072143-68072223 10 2.26e-04 ATCTTGGAT GCAGTAAA GTGGATCAGT chr10:75173089-75173169 14 2.76e-04 GTTTACGGCA GTCGGAAG ACAACAGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:141456815-141456895 1.4e-05 29_[+1]_43 chr6:107780749-107780829 1.4e-05 31_[+1]_41 chr10:120514479-12051455 1.4e-05 18_[+1]_54 chr12:1058929-1059009 1.4e-05 70_[+1]_2 chr1:86174095-86174175 1.4e-05 30_[+1]_42 chr17:3791838-3791918 1.4e-05 61_[+1]_11 chr16:70148132-70148212 1.4e-05 30_[+1]_42 chrX:119737882-119737962 1.4e-05 50_[+1]_22 chr15:36825467-36825547 1.4e-05 48_[+1]_24 chr1:5916610-5916690 1.4e-05 44_[+1]_28 chr10:105127616-10512769 1.4e-05 28_[+1]_44 chr17:79519444-79519524 1.4e-05 9_[+1]_63 chr1:77685093-77685173 1.4e-05 39_[+1]_33 chr1:46002782-46002862 1.4e-05 14_[+1]_58 chr20:30135108-30135188 1.4e-05 38_[+1]_34 chr17:62637705-62637785 1.4e-05 41_[+1]_31 chr9:108320360-108320440 1.4e-05 47_[+1]_25 chr4:87855833-87855913 1.4e-05 41_[+1]_31 chr17:1040938-1041018 1.4e-05 51_[+1]_21 chr19:47217205-47217285 2.5e-05 20_[+1]_52 chr10:72445450-72445530 2.5e-05 36_[+1]_36 chr19:44952691-44952771 2.5e-05 64_[+1]_8 chr9:100807815-100807895 2.5e-05 38_[+1]_34 chr4:6675711-6675791 2.5e-05 42_[+1]_30 chr20:49451479-49451559 2.5e-05 48_[+1]_24 chr5:175815036-175815116 2.5e-05 29_[+1]_43 chr19:41339782-41339862 2.5e-05 1_[+1]_71 chr2:85788675-85788755 2.5e-05 6_[+1]_66 chr3:180707493-180707573 2.5e-05 64_[+1]_8 chr20:5986638-5986718 2.5e-05 48_[+1]_24 chr4:142142031-142142111 2.5e-05 20_[+1]_52 chr9:115983554-115983634 2.5e-05 41_[+1]_31 chr8:33370656-33370736 2.5e-05 65_[+1]_7 chr6:88050086-88050166 2.5e-05 46_[+1]_26 chr15:59279826-59279906 2.5e-05 20_[+1]_52 chr12:63226483-63226563 2.5e-05 27_[+1]_45 chr14:57857218-57857298 2.5e-05 32_[+1]_40 chrX:30766863-30766943 2.5e-05 48_[+1]_24 chr13:113377151-11337723 4.2e-05 41_[+1]_31 chr20:49536279-49536359 4.2e-05 13_[+1]_59 chr17:56296567-56296647 4.2e-05 49_[+1]_23 chr12:123518786-12351886 4.2e-05 57_[+1]_15 chr16:85833153-85833233 4.2e-05 13_[+1]_59 chr12:25348258-25348338 4.2e-05 5_[+1]_67 chr9:7799758-7799838 4.2e-05 49_[+1]_23 chr16:81130359-81130439 5.7e-05 5_[+1]_67 chr3:171789836-171789916 5.7e-05 [+1]_72 chr2:149402928-149403008 7.5e-05 47_[+1]_25 chr2:32264836-32264916 7.5e-05 33_[+1]_39 chr10:18948141-18948221 7.5e-05 62_[+1]_10 chrX:52950132-52950212 7.5e-05 15_[+1]_57 chr16:89392549-89392629 7.5e-05 40_[+1]_32 chr20:48967516-48967596 7.5e-05 28_[+1]_44 chr6:112408711-112408791 7.5e-05 9_[+1]_63 chr1:101491337-101491417 0.00011 30_[+1]_42 chr11:62341344-62341424 0.00011 9_[+1]_63 chr10:31607913-31607993 0.00011 46_[+1]_26 chr4:56815541-56815621 0.00013 62_[+1]_10 chr16:15736982-15737062 0.00013 43_[+1]_29 chr6:160825702-160825782 0.00013 23_[+1]_49 chr3:43629043-43629123 0.00013 36_[+1]_36 chr13:95248402-95248482 0.00013 11_[+1]_61 chr17:4046338-4046418 0.00013 7_[+1]_65 chr11:107328509-10732858 0.00014 31_[+1]_41 chr1:46039909-46039989 0.00016 [+1]_72 chr7:65215690-65215770 0.00017 3_[+1]_69 chr1:111682828-111682908 0.00017 16_[+1]_56 chr12:51422144-51422224 0.00017 52_[+1]_20 chr3:15902839-15902919 0.00017 53_[+1]_19 chr4:6711560-6711640 0.00019 35_[+1]_37 chr17:4699355-4699435 0.00019 26_[+1]_46 chrX:153639786-153639866 0.00019 26_[+1]_46 chr1:46050618-46050698 0.00022 42_[+1]_30 chr15:68072143-68072223 0.00023 9_[+1]_63 chr10:75173089-75173169 0.00028 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYCGTAAA width=8 seqs=75 chr3:141456815-141456895 ( 30) GCCGTAAA 1 chr6:107780749-107780829 ( 32) GCCGTAAA 1 chr10:120514479-12051455 ( 19) GCCGTAAA 1 chr12:1058929-1059009 ( 71) GCCGTAAA 1 chr1:86174095-86174175 ( 31) GCCGTAAA 1 chr17:3791838-3791918 ( 62) GCCGTAAA 1 chr16:70148132-70148212 ( 31) GCCGTAAA 1 chrX:119737882-119737962 ( 51) GCCGTAAA 1 chr15:36825467-36825547 ( 49) GCCGTAAA 1 chr1:5916610-5916690 ( 45) GCCGTAAA 1 chr10:105127616-10512769 ( 29) GCCGTAAA 1 chr17:79519444-79519524 ( 10) GCCGTAAA 1 chr1:77685093-77685173 ( 40) GCCGTAAA 1 chr1:46002782-46002862 ( 15) GCCGTAAA 1 chr20:30135108-30135188 ( 39) GCCGTAAA 1 chr17:62637705-62637785 ( 42) GCCGTAAA 1 chr9:108320360-108320440 ( 48) GCCGTAAA 1 chr4:87855833-87855913 ( 42) GCCGTAAA 1 chr17:1040938-1041018 ( 52) GCCGTAAA 1 chr19:47217205-47217285 ( 21) GTCGTAAA 1 chr10:72445450-72445530 ( 37) GTCGTAAA 1 chr19:44952691-44952771 ( 65) GTCGTAAA 1 chr9:100807815-100807895 ( 39) GTCGTAAA 1 chr4:6675711-6675791 ( 43) GTCGTAAA 1 chr20:49451479-49451559 ( 49) GTCGTAAA 1 chr5:175815036-175815116 ( 30) GTCGTAAA 1 chr19:41339782-41339862 ( 2) GTCGTAAA 1 chr2:85788675-85788755 ( 7) GTCGTAAA 1 chr3:180707493-180707573 ( 65) GTCGTAAA 1 chr20:5986638-5986718 ( 49) GTCGTAAA 1 chr4:142142031-142142111 ( 21) GTCGTAAA 1 chr9:115983554-115983634 ( 42) GTCGTAAA 1 chr8:33370656-33370736 ( 66) GTCGTAAA 1 chr6:88050086-88050166 ( 47) GTCGTAAA 1 chr15:59279826-59279906 ( 21) GTCGTAAA 1 chr12:63226483-63226563 ( 28) GTCGTAAA 1 chr14:57857218-57857298 ( 33) GTCGTAAA 1 chrX:30766863-30766943 ( 49) GTCGTAAA 1 chr13:113377151-11337723 ( 42) GCCGGAAA 1 chr20:49536279-49536359 ( 14) GCCGGAAA 1 chr17:56296567-56296647 ( 50) GCCGGAAA 1 chr12:123518786-12351886 ( 58) GCCGGAAA 1 chr16:85833153-85833233 ( 14) GCCGGAAA 1 chr12:25348258-25348338 ( 6) GCCGGAAA 1 chr9:7799758-7799838 ( 50) GCCGGAAA 1 chr16:81130359-81130439 ( 6) GTCGGAAA 1 chr3:171789836-171789916 ( 1) GTCGGAAA 1 chr2:149402928-149403008 ( 48) GCCGTAAG 1 chr2:32264836-32264916 ( 34) GCCGTAAG 1 chr10:18948141-18948221 ( 63) GCCGTAAG 1 chrX:52950132-52950212 ( 16) GCCGTAAG 1 chr16:89392549-89392629 ( 41) GCCGTAAG 1 chr20:48967516-48967596 ( 29) GCCGTAAG 1 chr6:112408711-112408791 ( 10) GCCGTAAG 1 chr1:101491337-101491417 ( 31) GCCGCAAA 1 chr11:62341344-62341424 ( 10) GCCGCAAA 1 chr10:31607913-31607993 ( 47) GCCGCAAA 1 chr4:56815541-56815621 ( 63) GTCGCAAA 1 chr16:15736982-15737062 ( 44) GTCGCAAA 1 chr6:160825702-160825782 ( 24) ACCGTAAA 1 chr3:43629043-43629123 ( 37) ACCGTAAA 1 chr13:95248402-95248482 ( 12) ACCGTAAA 1 chr17:4046338-4046418 ( 8) GTCGCAAA 1 chr11:107328509-10732858 ( 32) ATCGTAAA 1 chr1:46039909-46039989 ( 1) GCCGTGAA 1 chr7:65215690-65215770 ( 4) GTCGTGAA 1 chr1:111682828-111682908 ( 17) GTCGTGAA 1 chr12:51422144-51422224 ( 53) GTCGTGAA 1 chr3:15902839-15902919 ( 54) GTCGTGAA 1 chr4:6711560-6711640 ( 36) GCCGTCAA 1 chr17:4699355-4699435 ( 27) GCCGTCAA 1 chrX:153639786-153639866 ( 27) GCCGTCAA 1 chr1:46050618-46050698 ( 43) GACGTAAA 1 chr15:68072143-68072223 ( 10) GCAGTAAA 1 chr10:75173089-75173169 ( 14) GTCGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.3564 E= 1.1e-061 -201 -1287 174 -1287 -401 108 -1287 83 -401 183 -1287 -1287 -1287 -1287 182 -1287 -1287 -179 -108 181 206 -279 -208 -1287 222 -1287 -1287 -1287 206 -1287 -141 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 1.1e-061 0.053333 0.000000 0.946667 0.000000 0.013333 0.586667 0.000000 0.400000 0.013333 0.986667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.080000 0.133333 0.786667 0.893333 0.040000 0.066667 0.000000 1.000000 0.000000 0.000000 0.000000 0.893333 0.000000 0.106667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCGTAAA MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]CGTAAA -------------------------------------------------------------------------------- Time 4.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTACGRC MEME-2 width = 8 sites = 86 llr = 719 E-value = 6.9e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::7:14: pos.-specific C ::11a::a probability G :::3:96: matrix T aa9::::: bits 2.2 * 2.0 ** 1.8 ** * 1.6 *** * * Relative 1.3 *** ** * Entropy 1.1 *** ** * (12.1 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTACGGC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:52719970-52720050 35 1.52e-05 GGTGACGCAC TTTACGGC GGCAGCGTAA chr1:38388513-38388593 43 1.52e-05 GTGCAATTAC TTTACGGC AACAGGTTGG chr12:30848809-30848889 43 1.52e-05 CAGAGCTTCC TTTACGGC GGCCTCTTCC chr9:33474019-33474099 52 1.52e-05 GTTTCTGTGC TTTACGGC CTCTTCGCGA chr7:22862450-22862530 44 1.52e-05 ACACACGGCC TTTACGGC AGGAGTCGTG chr6:107780749-107780829 72 1.52e-05 TACTCTCTAC TTTACGGC G chr20:49451479-49451559 40 1.52e-05 tgcttttcac tttacggc tgtcgtaaac chr3:170445106-170445186 22 1.52e-05 tactgctccc tttacggc aaatctcctt chr16:74402093-74402173 43 1.52e-05 CCTTCCGCGC TTTACGGC CCCCGGGCAC chr10:105881869-10588194 31 1.52e-05 ACAGGATCGA TTTACGGC CGCAGGTGCG chr11:47869480-47869560 1 1.52e-05 . TTTACGGC GCCAGCCACG chr1:10795190-10795270 46 1.52e-05 ACGGCGGTAA TTTACGGC ATCACAAAAT chr8:41347995-41348075 6 1.52e-05 GTGGC TTTACGGC CGGAGGAGAG chr15:101142590-10114267 29 1.52e-05 CAAAGGCAAC TTTACGGC AGGCAGAGGG chr16:67143805-67143885 12 1.52e-05 CTCCCCGCGC TTTACGGC CCGGCAcgcc chr6:28183426-28183506 32 1.52e-05 attgcgacat tttacggc tgctgcatga chr20:36322338-36322418 6 1.52e-05 CGCGC TTTACGGC GGCGCGTCCT chr2:101869305-101869385 47 1.52e-05 AACAGCGCGC TTTACGGC CGCGGGGACG chr10:75173089-75173169 5 1.52e-05 GGCG TTTACGGC AGTCGGAAGA chr17:7232785-7232865 45 1.52e-05 GGAGCCTCGC TTTACGGC ATAGCGAGGT chr4:123843180-123843260 26 1.52e-05 gaaatggtgg tttacggc aatttccgaa chr4:111166807-111166887 52 2.67e-05 CAAGGCAGGT TTTACGAC AAGGAAACAG chr1:101491337-101491417 60 2.67e-05 TTTACTGCAC TTTACGAC TAGCGGGAGG chr16:85833153-85833233 39 2.67e-05 GGCCCGGCAT TTTACGAC GTTCGCAGCG chr1:154245004-154245084 53 2.67e-05 CTTACCGTCG TTTACGAC AGTGTCAGGA chr3:99979766-99979846 21 2.67e-05 CCGAAGACCT TTTACGAC ATTGAGTCTC chr15:43398285-43398365 24 2.67e-05 GGACGACACT TTTACGAC GGCCCCTGAA chr1:171750309-171750389 6 2.67e-05 GCGTT TTTACGAC GGACTGGCTT chr11:107328509-10732858 66 2.67e-05 AAAATTCTAG TTTACGAC GGTCGTA chr6:27572937-27573017 12 2.67e-05 GCGGTGTGAG TTTACGAC AGTTGCTGGT chr10:33346761-33346841 49 2.67e-05 GGACCCCCAT TTTACGAC ACAGGGCAGG chr1:11986489-11986569 22 2.67e-05 CGCCGTGTCT TTTACGAC AGATGGAAAA chr15:68072143-68072223 55 4.66e-05 CCGTGCCAGA TTTGCGGC AGCGGGAGGC chrX:129040072-129040152 42 4.66e-05 CAGAAATTGC TTTGCGGC CCGCACGGAA chr11:85956141-85956221 41 4.66e-05 cagcggcAAC TTTGCGGC AAGCTCGGGC chr2:172778722-172778802 24 4.66e-05 CGAAAGTCCG TTTGCGGC CTCCTTCTCC chr19:18263451-18263531 32 4.66e-05 ACTTCTGCTT TTTGCGGC AGGCCCTTTC chr19:46850297-46850377 49 4.66e-05 TAGGGGTCGC TTTGCGGC ATGGCGATGG chr2:120436742-120436822 8 4.66e-05 GGCGTGC TTTGCGGC CGCCCTGCCG chr4:6711560-6711640 59 4.66e-05 CCTCGGCCTT TTTGCGGC CCTTTCACGA chr9:108320360-108320440 27 4.66e-05 GACGGCGGCT TTTGCGGC GGTTGCTGTG chr22:42177224-42177304 26 6.18e-05 GTGTGAGTGT TTTGCGAC AGGCCGACTG chr13:80055210-80055290 23 6.18e-05 CCGCGCGCCT TTTGCGAC CGCCCACTCG chr15:72410706-72410786 23 6.18e-05 AACCTCTGAG TTTGCGAC CGTAGCTGTC chr18:54318501-54318581 44 6.18e-05 CCCCCTCATT TTTGCGAC AGTTGCAGCG chr13:95248402-95248482 61 6.18e-05 GCCGCGACCT TTTGCGAC GCGCCTCGCT chr1:77685093-77685173 63 6.18e-05 GCTGCGGGTT TTTGCGAC ACCATCCGCG chr20:2559307-2559387 32 6.18e-05 cccctgcaat tttgcgac agttcctatc chr1:46770494-46770574 48 6.18e-05 tcttatcaat tttgcgac acAGCTACTA chr10:115478864-11547894 16 6.18e-05 CCCATCTAAT TTTGCGAC AGTCACGAAA chrX:153639786-153639866 50 6.18e-05 CCGTGCGCGC TTTGCGAC AGTCGGTCGG chr20:48967516-48967596 70 8.05e-05 tcgctgttgt ttcacggc tga chr12:88535888-88535968 7 1.06e-04 CTACAG TTCACGAC CGTGGGTGAT chr3:171789836-171789916 44 1.06e-04 AATACGGCAT TTTACAGc agtgctgtcc chr10:120514479-12051455 49 1.06e-04 CTCACGACGT TTTACAGC GGCTTCCAAC chr5:96518951-96519031 27 1.06e-04 CTCTAAGCGC TTTACAGC GCCAGATGGC chr1:86174095-86174175 62 1.06e-04 GCCTCGCCCC TTCACGAC TTGTAGAGCT chr1:87379997-87380077 44 1.06e-04 CTTTCTTTTA TTCACGAC ACTTCGTCAA chr8:86019243-86019323 43 1.06e-04 GCAGTTTTAC TTTACAGC AAGTTCAAGA chr2:145115662-145115742 18 1.06e-04 CATGTATCAT TTCACGAC AATGACTCAG chr14:36278501-36278581 15 1.06e-04 GTGATGGGGT TTCACGAC TCTGCCGTCG chr8:33370656-33370736 53 1.06e-04 ACCTTCTTAT TTCACGAC GTATGGTCGT chr16:77714012-77714092 9 1.06e-04 ttctgctt ttcacgac atttcacgtc chr6:163148922-163149002 13 1.35e-04 ACCGCCGCCC TTTCCGGC TTCAGGCCCA chr11:125772997-12577307 68 1.35e-04 CCACACTTAC TTTCCGGC AGCCG chr14:75389901-75389981 68 1.35e-04 GGGCCGCTGC TTTCCGGC ATCCA chr3:129158801-129158881 22 1.35e-04 CCGCCGCTGC TTTCCGGC CGCCCCCTCG chr9:115983554-115983634 70 1.35e-04 GGCGTGCTGC TTTCCGGC AGG chr5:89704858-89704938 5 1.62e-04 TAGT TTTACGGT ACAACGTCTA chr9:101019299-101019379 30 1.62e-04 GCCAGACAAC TTTACGGT GAAGCTAATG chr4:77155599-77155679 65 1.62e-04 tgcttcctgc tttacggt tggaatcc chr2:356516-356596 64 1.83e-04 CACGACTGCA TTTACGTC GCTCCCTAA chr2:205851510-205851590 21 1.83e-04 CAGCCCACCT TTTACGTC CTGCCATAAA chr14:96828468-96828548 35 1.83e-04 AACACCTGCT TTTACGAT CTGTCACGTG chr1:46039909-46039989 23 1.98e-04 ctagacttca tttacgcc atggatacta chrX:30766863-30766943 38 1.98e-04 aaatgctggt tttacgcc actgtcgtaa chr16:81130359-81130439 32 2.35e-04 agtacagagg tttactgc aaagtacaca chr8:19675818-19675898 60 2.35e-04 TGACATCACT TTTACTGC ACTGAATCTC chr12:53400010-53400090 24 2.87e-04 CGTGAGGGGT TTCGCGAC AACCCAGGCC chr20:44465595-44465675 14 2.87e-04 agctgtgtga cttacggc aagtctttga chr1:168335093-168335173 27 2.87e-04 ACTAGGTTGA CTTACGGC TGAAAGAAAT chr3:133291964-133292044 72 2.87e-04 GCCTGTCCGT TTCGCGAC A chr2:167194579-167194659 46 2.87e-04 tttcagcaat tttgcagc aatccatgca chr7:155437127-155437207 6 3.22e-04 AGCGC CTTACGAC TGAACCCGGA chr6:88050086-88050166 64 3.81e-04 ATTTTGTCCT TTCACAGC TGCAGCCAT chr11:66050050-66050130 24 4.35e-04 GCGCGGCTGC TTCCCGGC CGTGCCGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:52719970-52720050 1.5e-05 34_[+2]_38 chr1:38388513-38388593 1.5e-05 42_[+2]_30 chr12:30848809-30848889 1.5e-05 42_[+2]_30 chr9:33474019-33474099 1.5e-05 51_[+2]_21 chr7:22862450-22862530 1.5e-05 43_[+2]_29 chr6:107780749-107780829 1.5e-05 71_[+2]_1 chr20:49451479-49451559 1.5e-05 39_[+2]_33 chr3:170445106-170445186 1.5e-05 21_[+2]_51 chr16:74402093-74402173 1.5e-05 42_[+2]_30 chr10:105881869-10588194 1.5e-05 30_[+2]_42 chr11:47869480-47869560 1.5e-05 [+2]_72 chr1:10795190-10795270 1.5e-05 45_[+2]_27 chr8:41347995-41348075 1.5e-05 5_[+2]_67 chr15:101142590-10114267 1.5e-05 28_[+2]_44 chr16:67143805-67143885 1.5e-05 11_[+2]_61 chr6:28183426-28183506 1.5e-05 31_[+2]_41 chr20:36322338-36322418 1.5e-05 5_[+2]_67 chr2:101869305-101869385 1.5e-05 46_[+2]_26 chr10:75173089-75173169 1.5e-05 4_[+2]_68 chr17:7232785-7232865 1.5e-05 44_[+2]_28 chr4:123843180-123843260 1.5e-05 25_[+2]_47 chr4:111166807-111166887 2.7e-05 51_[+2]_21 chr1:101491337-101491417 2.7e-05 59_[+2]_13 chr16:85833153-85833233 2.7e-05 38_[+2]_34 chr1:154245004-154245084 2.7e-05 52_[+2]_20 chr3:99979766-99979846 2.7e-05 20_[+2]_52 chr15:43398285-43398365 2.7e-05 23_[+2]_49 chr1:171750309-171750389 2.7e-05 5_[+2]_67 chr11:107328509-10732858 2.7e-05 65_[+2]_7 chr6:27572937-27573017 2.7e-05 11_[+2]_61 chr10:33346761-33346841 2.7e-05 48_[+2]_24 chr1:11986489-11986569 2.7e-05 21_[+2]_51 chr15:68072143-68072223 4.7e-05 54_[+2]_18 chrX:129040072-129040152 4.7e-05 41_[+2]_31 chr11:85956141-85956221 4.7e-05 40_[+2]_32 chr2:172778722-172778802 4.7e-05 23_[+2]_49 chr19:18263451-18263531 4.7e-05 31_[+2]_41 chr19:46850297-46850377 4.7e-05 48_[+2]_24 chr2:120436742-120436822 4.7e-05 7_[+2]_65 chr4:6711560-6711640 4.7e-05 58_[+2]_14 chr9:108320360-108320440 4.7e-05 26_[+2]_46 chr22:42177224-42177304 6.2e-05 25_[+2]_47 chr13:80055210-80055290 6.2e-05 22_[+2]_50 chr15:72410706-72410786 6.2e-05 22_[+2]_50 chr18:54318501-54318581 6.2e-05 43_[+2]_29 chr13:95248402-95248482 6.2e-05 60_[+2]_12 chr1:77685093-77685173 6.2e-05 62_[+2]_10 chr20:2559307-2559387 6.2e-05 31_[+2]_41 chr1:46770494-46770574 6.2e-05 47_[+2]_25 chr10:115478864-11547894 6.2e-05 15_[+2]_57 chrX:153639786-153639866 6.2e-05 49_[+2]_23 chr20:48967516-48967596 8.1e-05 69_[+2]_3 chr12:88535888-88535968 0.00011 6_[+2]_66 chr3:171789836-171789916 0.00011 43_[+2]_29 chr10:120514479-12051455 0.00011 48_[+2]_24 chr5:96518951-96519031 0.00011 26_[+2]_46 chr1:86174095-86174175 0.00011 61_[+2]_11 chr1:87379997-87380077 0.00011 43_[+2]_29 chr8:86019243-86019323 0.00011 42_[+2]_30 chr2:145115662-145115742 0.00011 17_[+2]_55 chr14:36278501-36278581 0.00011 14_[+2]_58 chr8:33370656-33370736 0.00011 52_[+2]_20 chr16:77714012-77714092 0.00011 8_[+2]_64 chr6:163148922-163149002 0.00013 12_[+2]_60 chr11:125772997-12577307 0.00013 67_[+2]_5 chr14:75389901-75389981 0.00013 67_[+2]_5 chr3:129158801-129158881 0.00013 21_[+2]_51 chr9:115983554-115983634 0.00013 69_[+2]_3 chr5:89704858-89704938 0.00016 4_[+2]_68 chr9:101019299-101019379 0.00016 29_[+2]_43 chr4:77155599-77155679 0.00016 64_[+2]_8 chr2:356516-356596 0.00018 63_[+2]_9 chr2:205851510-205851590 0.00018 20_[+2]_52 chr14:96828468-96828548 0.00018 34_[+2]_38 chr1:46039909-46039989 0.0002 22_[+2]_50 chrX:30766863-30766943 0.0002 37_[+2]_35 chr16:81130359-81130439 0.00023 31_[+2]_41 chr8:19675818-19675898 0.00023 59_[+2]_13 chr12:53400010-53400090 0.00029 23_[+2]_49 chr20:44465595-44465675 0.00029 13_[+2]_59 chr1:168335093-168335173 0.00029 26_[+2]_46 chr3:133291964-133292044 0.00029 71_[+2]_1 chr2:167194579-167194659 0.00029 45_[+2]_27 chr7:155437127-155437207 0.00032 5_[+2]_67 chr6:88050086-88050166 0.00038 63_[+2]_9 chr11:66050050-66050130 0.00044 23_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTACGRC width=8 seqs=86 chr3:52719970-52720050 ( 35) TTTACGGC 1 chr1:38388513-38388593 ( 43) TTTACGGC 1 chr12:30848809-30848889 ( 43) TTTACGGC 1 chr9:33474019-33474099 ( 52) TTTACGGC 1 chr7:22862450-22862530 ( 44) TTTACGGC 1 chr6:107780749-107780829 ( 72) TTTACGGC 1 chr20:49451479-49451559 ( 40) TTTACGGC 1 chr3:170445106-170445186 ( 22) TTTACGGC 1 chr16:74402093-74402173 ( 43) TTTACGGC 1 chr10:105881869-10588194 ( 31) TTTACGGC 1 chr11:47869480-47869560 ( 1) TTTACGGC 1 chr1:10795190-10795270 ( 46) TTTACGGC 1 chr8:41347995-41348075 ( 6) TTTACGGC 1 chr15:101142590-10114267 ( 29) TTTACGGC 1 chr16:67143805-67143885 ( 12) TTTACGGC 1 chr6:28183426-28183506 ( 32) TTTACGGC 1 chr20:36322338-36322418 ( 6) TTTACGGC 1 chr2:101869305-101869385 ( 47) TTTACGGC 1 chr10:75173089-75173169 ( 5) TTTACGGC 1 chr17:7232785-7232865 ( 45) TTTACGGC 1 chr4:123843180-123843260 ( 26) TTTACGGC 1 chr4:111166807-111166887 ( 52) TTTACGAC 1 chr1:101491337-101491417 ( 60) TTTACGAC 1 chr16:85833153-85833233 ( 39) TTTACGAC 1 chr1:154245004-154245084 ( 53) TTTACGAC 1 chr3:99979766-99979846 ( 21) TTTACGAC 1 chr15:43398285-43398365 ( 24) TTTACGAC 1 chr1:171750309-171750389 ( 6) TTTACGAC 1 chr11:107328509-10732858 ( 66) TTTACGAC 1 chr6:27572937-27573017 ( 12) TTTACGAC 1 chr10:33346761-33346841 ( 49) TTTACGAC 1 chr1:11986489-11986569 ( 22) TTTACGAC 1 chr15:68072143-68072223 ( 55) TTTGCGGC 1 chrX:129040072-129040152 ( 42) TTTGCGGC 1 chr11:85956141-85956221 ( 41) TTTGCGGC 1 chr2:172778722-172778802 ( 24) TTTGCGGC 1 chr19:18263451-18263531 ( 32) TTTGCGGC 1 chr19:46850297-46850377 ( 49) TTTGCGGC 1 chr2:120436742-120436822 ( 8) TTTGCGGC 1 chr4:6711560-6711640 ( 59) TTTGCGGC 1 chr9:108320360-108320440 ( 27) TTTGCGGC 1 chr22:42177224-42177304 ( 26) TTTGCGAC 1 chr13:80055210-80055290 ( 23) TTTGCGAC 1 chr15:72410706-72410786 ( 23) TTTGCGAC 1 chr18:54318501-54318581 ( 44) TTTGCGAC 1 chr13:95248402-95248482 ( 61) TTTGCGAC 1 chr1:77685093-77685173 ( 63) TTTGCGAC 1 chr20:2559307-2559387 ( 32) TTTGCGAC 1 chr1:46770494-46770574 ( 48) TTTGCGAC 1 chr10:115478864-11547894 ( 16) TTTGCGAC 1 chrX:153639786-153639866 ( 50) TTTGCGAC 1 chr20:48967516-48967596 ( 70) TTCACGGC 1 chr12:88535888-88535968 ( 7) TTCACGAC 1 chr3:171789836-171789916 ( 44) TTTACAGC 1 chr10:120514479-12051455 ( 49) TTTACAGC 1 chr5:96518951-96519031 ( 27) TTTACAGC 1 chr1:86174095-86174175 ( 62) TTCACGAC 1 chr1:87379997-87380077 ( 44) TTCACGAC 1 chr8:86019243-86019323 ( 43) TTTACAGC 1 chr2:145115662-145115742 ( 18) TTCACGAC 1 chr14:36278501-36278581 ( 15) TTCACGAC 1 chr8:33370656-33370736 ( 53) TTCACGAC 1 chr16:77714012-77714092 ( 9) TTCACGAC 1 chr6:163148922-163149002 ( 13) TTTCCGGC 1 chr11:125772997-12577307 ( 68) TTTCCGGC 1 chr14:75389901-75389981 ( 68) TTTCCGGC 1 chr3:129158801-129158881 ( 22) TTTCCGGC 1 chr9:115983554-115983634 ( 70) TTTCCGGC 1 chr5:89704858-89704938 ( 5) TTTACGGT 1 chr9:101019299-101019379 ( 30) TTTACGGT 1 chr4:77155599-77155679 ( 65) TTTACGGT 1 chr2:356516-356596 ( 64) TTTACGTC 1 chr2:205851510-205851590 ( 21) TTTACGTC 1 chr14:96828468-96828548 ( 35) TTTACGAT 1 chr1:46039909-46039989 ( 23) TTTACGCC 1 chrX:30766863-30766943 ( 38) TTTACGCC 1 chr16:81130359-81130439 ( 32) TTTACTGC 1 chr8:19675818-19675898 ( 60) TTTACTGC 1 chr12:53400010-53400090 ( 24) TTCGCGAC 1 chr20:44465595-44465675 ( 14) CTTACGGC 1 chr1:168335093-168335173 ( 27) CTTACGGC 1 chr3:133291964-133292044 ( 72) TTCGCGAC 1 chr2:167194579-167194659 ( 46) TTTGCAGC 1 chr7:155437127-155437207 ( 6) CTTACGAC 1 chr6:88050086-88050166 ( 64) TTCACAGC 1 chr11:66050050-66050130 ( 24) TTCCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.24634 E= 6.9e-064 -1307 -299 -1307 210 -1307 -1307 -1307 215 -1307 -99 -1307 194 165 -199 -14 -1307 -1307 185 -1307 -1307 -162 -1307 168 -327 79 -358 104 -327 -1307 178 -1307 -227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 6.9e-064 0.000000 0.034884 0.000000 0.965116 0.000000 0.000000 0.000000 1.000000 0.000000 0.139535 0.000000 0.860465 0.674419 0.069767 0.255814 0.000000 0.000000 1.000000 0.000000 0.000000 0.069767 0.000000 0.906977 0.023256 0.372093 0.023256 0.581395 0.023256 0.000000 0.953488 0.000000 0.046512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACGRC MEME-2 regular expression -------------------------------------------------------------------------------- TTT[AG]CG[GA]C -------------------------------------------------------------------------------- Time 8.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGATTGG MEME-3 width = 8 sites = 18 llr = 180 E-value = 5.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 11:9:::: pos.-specific C 9::::::: probability G ::a1:1aa matrix T :9:1a9:: bits 2.2 * 2.0 * 1.8 ** **** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGATTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:85553610-85553690 71 1.54e-05 tgacagggcg ctgattgg tg chrX:38660637-38660717 7 1.54e-05 CGGCTT CTGATTGG CTGAAGCCAG chr4:142253815-142253895 52 1.54e-05 tgacagggcg ctgattgg tgcgtttata chr8:22927871-22927951 30 1.54e-05 ccacaccctg ctgattgg tagagcggag chr16:69760322-69760402 43 1.54e-05 GTCCGGGGCG CTGATTGG CTGGGCTCGT chr2:108363437-108363517 17 1.54e-05 ccacatcctg ctgattgg tagagcccag chr7:119590910-119590990 26 1.54e-05 ccacgtcctg ctgattgg tagagcccag chr8:11660034-11660114 46 1.54e-05 CCTTCCGCGA CTGATTGG CCGGGGTCTT chr6:30783336-30783416 65 1.54e-05 tgacagggtg ctgattgg tgcgttta chr11:5612915-5612995 35 1.54e-05 gagacatgat ctgattgg atcctgccat chr2:152252313-152252393 71 1.54e-05 agggctcaat ctgattgg at chr19:8226191-8226271 44 1.54e-05 gaggcatgat ctgattgg atccggccat chr7:66440354-66440434 70 1.54e-05 agggctcaat ctgattgg atc chr17:56365-56445 60 2.74e-05 ATGGGGAAAC ATGATTGG GCGAGTGTTT chr1:46050618-46050698 21 5.83e-05 GAGGTGGTGT CTGTTTGG GGGGAACATT chr20:43485696-43485776 37 5.83e-05 aggatccagt cagattgg gcctcactgc chr20:56032461-56032541 64 9.80e-05 ctggcatcac ctgatggg aacagccaa chr15:72410706-72410786 72 9.80e-05 TGCCTGAAGG CTGGTTGG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:85553610-85553690 1.5e-05 70_[+3]_2 chrX:38660637-38660717 1.5e-05 6_[+3]_66 chr4:142253815-142253895 1.5e-05 51_[+3]_21 chr8:22927871-22927951 1.5e-05 29_[+3]_43 chr16:69760322-69760402 1.5e-05 42_[+3]_30 chr2:108363437-108363517 1.5e-05 16_[+3]_56 chr7:119590910-119590990 1.5e-05 25_[+3]_47 chr8:11660034-11660114 1.5e-05 45_[+3]_27 chr6:30783336-30783416 1.5e-05 64_[+3]_8 chr11:5612915-5612995 1.5e-05 34_[+3]_38 chr2:152252313-152252393 1.5e-05 70_[+3]_2 chr19:8226191-8226271 1.5e-05 43_[+3]_29 chr7:66440354-66440434 1.5e-05 69_[+3]_3 chr17:56365-56445 2.7e-05 59_[+3]_13 chr1:46050618-46050698 5.8e-05 20_[+3]_52 chr20:43485696-43485776 5.8e-05 36_[+3]_36 chr20:56032461-56032541 9.8e-05 63_[+3]_9 chr15:72410706-72410786 9.8e-05 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGATTGG width=8 seqs=18 chr3:85553610-85553690 ( 71) CTGATTGG 1 chrX:38660637-38660717 ( 7) CTGATTGG 1 chr4:142253815-142253895 ( 52) CTGATTGG 1 chr8:22927871-22927951 ( 30) CTGATTGG 1 chr16:69760322-69760402 ( 43) CTGATTGG 1 chr2:108363437-108363517 ( 17) CTGATTGG 1 chr7:119590910-119590990 ( 26) CTGATTGG 1 chr8:11660034-11660114 ( 46) CTGATTGG 1 chr6:30783336-30783416 ( 65) CTGATTGG 1 chr11:5612915-5612995 ( 35) CTGATTGG 1 chr2:152252313-152252393 ( 71) CTGATTGG 1 chr19:8226191-8226271 ( 44) CTGATTGG 1 chr7:66440354-66440434 ( 70) CTGATTGG 1 chr17:56365-56445 ( 60) ATGATTGG 1 chr1:46050618-46050698 ( 21) CTGTTTGG 1 chr20:43485696-43485776 ( 37) CAGATTGG 1 chr20:56032461-56032541 ( 64) CTGATGGG 1 chr15:72410706-72410786 ( 72) CTGGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 5.8e-004 -195 177 -1081 -1081 -195 -1081 -1081 207 -1081 -1081 182 -1081 205 -1081 -234 -201 -1081 -1081 -1081 215 -1081 -1081 -234 207 -1081 -1081 182 -1081 -1081 -1081 182 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 5.8e-004 0.055556 0.944444 0.000000 0.000000 0.055556 0.000000 0.000000 0.944444 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.055556 0.055556 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 regular expression -------------------------------------------------------------------------------- CTGATTGG -------------------------------------------------------------------------------- Time 11.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACGCCA MEME-4 width = 8 sites = 23 llr = 215 E-value = 5.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::2:a pos.-specific C :a:a36a: probability G ::::71:: matrix T a::::1:: bits 2.2 * * * 2.0 * * * 1.8 **** ** 1.6 **** ** Relative 1.3 **** ** Entropy 1.1 **** ** (13.5 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACGCCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:79630452-79630532 72 1.76e-05 cctctcggct tcacgcca t chr17:7589647-7589727 64 1.76e-05 CCTCCCTGTC TCACGCCA TGGTAGCGT chr3:197466466-197466546 57 1.76e-05 tgagcagaga tcacgcca ctgcactcca chr10:70314965-70315045 43 1.76e-05 agtgagctga tcacgcca ctgcactcaa chr8:11660034-11660114 24 1.76e-05 TAGAGTGTTA TCACGCCA GTCTCCTTCC chr7:65570958-65571038 54 1.76e-05 tgagccgaga tcacgcca ccgcactcca chr7:145481983-145482063 27 1.76e-05 agccccgaga tcacgcca ctgcaagaat chr14:75389901-75389981 39 1.76e-05 TACCGGCCCT TCACGCCA GAGCGCGCCG chr20:56032461-56032541 19 3.48e-05 agccctggcg tcacccca tggcaggatc chr22:42228928-42229008 48 3.48e-05 TGACGCGCCA TCACCCCA CGCACCGCTT chr4:79550632-79550712 50 3.48e-05 ggaaggctgg tcacccca ccctaatctg chr20:43485696-43485776 15 3.48e-05 tgctctggca tcacccca tgacaggatc chr1:228045104-228045184 19 3.48e-05 agccccggtg tcacccca tggcgggatc chr12:51327637-51327717 25 3.48e-05 agctgtggta tcacccca tggcaggatc chr6:160825702-160825782 42 4.84e-05 gcgacagtaa tcacgaca gtgtggtatt chr20:52492193-52492273 38 4.84e-05 CCGCTATGCC TCACGACA CTTCTGCTAC chr17:4046338-4046418 50 4.84e-05 CTCTACCAAC TCACGACA GCTAGGCGGG chr4:6711560-6711640 71 4.84e-05 TGCGGCCCTT TCACGACA GA chr8:92082232-92082312 43 6.27e-05 TCTGCGCGCC TCACGTCA GGGCCAAGAG chr16:77714012-77714092 20 6.27e-05 tcacgacatt tcacgtca atgccaccat chr17:56365-56445 37 9.39e-05 CGAGTGTTTC TCACGGCA CCTCGATGGG chr18:54318501-54318581 66 9.39e-05 GCAGCGAAAG TCACGGCA GTTGGGG chr6:6657818-6657898 71 1.08e-04 cctcccagca tcacctca tt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:79630452-79630532 1.8e-05 71_[+4]_1 chr17:7589647-7589727 1.8e-05 63_[+4]_9 chr3:197466466-197466546 1.8e-05 56_[+4]_16 chr10:70314965-70315045 1.8e-05 42_[+4]_30 chr8:11660034-11660114 1.8e-05 23_[+4]_49 chr7:65570958-65571038 1.8e-05 53_[+4]_19 chr7:145481983-145482063 1.8e-05 26_[+4]_46 chr14:75389901-75389981 1.8e-05 38_[+4]_34 chr20:56032461-56032541 3.5e-05 18_[+4]_54 chr22:42228928-42229008 3.5e-05 47_[+4]_25 chr4:79550632-79550712 3.5e-05 49_[+4]_23 chr20:43485696-43485776 3.5e-05 14_[+4]_58 chr1:228045104-228045184 3.5e-05 18_[+4]_54 chr12:51327637-51327717 3.5e-05 24_[+4]_48 chr6:160825702-160825782 4.8e-05 41_[+4]_31 chr20:52492193-52492273 4.8e-05 37_[+4]_35 chr17:4046338-4046418 4.8e-05 49_[+4]_23 chr4:6711560-6711640 4.8e-05 70_[+4]_2 chr8:92082232-92082312 6.3e-05 42_[+4]_30 chr16:77714012-77714092 6.3e-05 19_[+4]_53 chr17:56365-56445 9.4e-05 36_[+4]_36 chr18:54318501-54318581 9.4e-05 65_[+4]_7 chr6:6657818-6657898 0.00011 70_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACGCCA width=8 seqs=23 chr17:79630452-79630532 ( 72) TCACGCCA 1 chr17:7589647-7589727 ( 64) TCACGCCA 1 chr3:197466466-197466546 ( 57) TCACGCCA 1 chr10:70314965-70315045 ( 43) TCACGCCA 1 chr8:11660034-11660114 ( 24) TCACGCCA 1 chr7:65570958-65571038 ( 54) TCACGCCA 1 chr7:145481983-145482063 ( 27) TCACGCCA 1 chr14:75389901-75389981 ( 39) TCACGCCA 1 chr20:56032461-56032541 ( 19) TCACCCCA 1 chr22:42228928-42229008 ( 48) TCACCCCA 1 chr4:79550632-79550712 ( 50) TCACCCCA 1 chr20:43485696-43485776 ( 15) TCACCCCA 1 chr1:228045104-228045184 ( 19) TCACCCCA 1 chr12:51327637-51327717 ( 25) TCACCCCA 1 chr6:160825702-160825782 ( 42) TCACGACA 1 chr20:52492193-52492273 ( 38) TCACGACA 1 chr17:4046338-4046418 ( 50) TCACGACA 1 chr4:6711560-6711640 ( 71) TCACGACA 1 chr8:92082232-92082312 ( 43) TCACGTCA 1 chr16:77714012-77714092 ( 20) TCACGTCA 1 chr17:56365-56445 ( 37) TCACGGCA 1 chr18:54318501-54318581 ( 66) TCACGGCA 1 chr6:6657818-6657898 ( 71) TCACCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 5.0e-004 -1117 -1117 -1117 215 -1117 185 -1117 -1117 222 -1117 -1117 -1117 -1117 185 -1117 -1117 -1117 13 130 -1117 -30 113 -170 -79 -1117 185 -1117 -1117 222 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 5.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.304348 0.695652 0.000000 0.173913 0.608696 0.086957 0.130435 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGCCA MEME-4 regular expression -------------------------------------------------------------------------------- TCAC[GC]CCA -------------------------------------------------------------------------------- Time 14.96 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGSGTGA MEME-5 width = 8 sites = 18 llr = 170 E-value = 3.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::1:::a pos.-specific C :::5:::: probability G :a84a:a: matrix T a:2::a:: bits 2.2 * * * 2.0 * * * 1.8 ** **** 1.6 ** **** Relative 1.3 ** **** Entropy 1.1 *** **** (13.6 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGTGA consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:16859706-16859786 38 1.94e-05 GGGAAGTTTG TGGCGTGA CTGTGTAAGG chr17:79630452-79630532 32 1.94e-05 tggagtgcag tggcgtga tctcagctca chr3:197466466-197466546 14 1.94e-05 ggcaggagaa tggcgtga tgaacccggg chr7:65570958-65571038 14 1.94e-05 ggcaggagaa tggcgtga acctgggagg chr1:28475002-28475082 49 1.94e-05 tggagagcag tggcgtga tctcggctca chr22:19803106-19803186 57 3.92e-05 tggagtgcag tggggtga tcacagctca chrX:38660637-38660717 36 3.92e-05 GGGGCGGTGG TGGGGTGA TTCCAAGGGC chr6:35331258-35331338 39 3.92e-05 ACGGCTCATC TGGGGTGA CTTCTGGGGC chr12:66037947-66038027 61 3.92e-05 gatcctgcca tggggtga tgccagagct chr11:5612915-5612995 52 3.92e-05 gatcctgcca tggggtga tgcaagggct chr2:152252313-152252393 49 3.92e-05 gatactgcta tggggtga ccccagggct chr7:66440354-66440434 48 3.92e-05 gatgctgcaa tggggtga tgccagggct chr12:6641867-6641947 6 5.46e-05 CTGGC TGTCGTGA CCACACTGGT chr5:159436372-159436452 64 5.46e-05 TTCAGACTCT TGTCGTGA TACAAGGGT chr4:88312482-88312562 68 5.46e-05 TTTCTCCCGG TGTCGTGA GCCGG chr10:105127616-10512769 51 5.46e-05 CTACTAGAGT TGTCGTGA AATGCTCCTC chr2:223574268-223574348 66 6.96e-05 AAACAAGGAT TGGAGTGA GCAGGCT chr19:48836322-48836402 57 6.96e-05 TATTGGAAGT TGGAGTGA AAAGTATAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:16859706-16859786 1.9e-05 37_[+5]_35 chr17:79630452-79630532 1.9e-05 31_[+5]_41 chr3:197466466-197466546 1.9e-05 13_[+5]_59 chr7:65570958-65571038 1.9e-05 13_[+5]_59 chr1:28475002-28475082 1.9e-05 48_[+5]_24 chr22:19803106-19803186 3.9e-05 56_[+5]_16 chrX:38660637-38660717 3.9e-05 35_[+5]_37 chr6:35331258-35331338 3.9e-05 38_[+5]_34 chr12:66037947-66038027 3.9e-05 60_[+5]_12 chr11:5612915-5612995 3.9e-05 51_[+5]_21 chr2:152252313-152252393 3.9e-05 48_[+5]_24 chr7:66440354-66440434 3.9e-05 47_[+5]_25 chr12:6641867-6641947 5.5e-05 5_[+5]_67 chr5:159436372-159436452 5.5e-05 63_[+5]_9 chr4:88312482-88312562 5.5e-05 67_[+5]_5 chr10:105127616-10512769 5.5e-05 50_[+5]_22 chr2:223574268-223574348 7e-05 65_[+5]_7 chr19:48836322-48836402 7e-05 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGSGTGA width=8 seqs=18 chr10:16859706-16859786 ( 38) TGGCGTGA 1 chr17:79630452-79630532 ( 32) TGGCGTGA 1 chr3:197466466-197466546 ( 14) TGGCGTGA 1 chr7:65570958-65571038 ( 14) TGGCGTGA 1 chr1:28475002-28475082 ( 49) TGGCGTGA 1 chr22:19803106-19803186 ( 57) TGGGGTGA 1 chrX:38660637-38660717 ( 36) TGGGGTGA 1 chr6:35331258-35331338 ( 39) TGGGGTGA 1 chr12:66037947-66038027 ( 61) TGGGGTGA 1 chr11:5612915-5612995 ( 52) TGGGGTGA 1 chr2:152252313-152252393 ( 49) TGGGGTGA 1 chr7:66440354-66440434 ( 48) TGGGGTGA 1 chr12:6641867-6641947 ( 6) TGTCGTGA 1 chr5:159436372-159436452 ( 64) TGTCGTGA 1 chr4:88312482-88312562 ( 68) TGTCGTGA 1 chr10:105127616-10512769 ( 51) TGTCGTGA 1 chr2:223574268-223574348 ( 66) TGGAGTGA 1 chr19:48836322-48836402 ( 57) TGGAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 3.7e+001 -1081 -1081 -1081 215 -1081 -1081 182 -1081 -1081 -1081 146 -2 -95 85 46 -1081 -1081 -1081 182 -1081 -1081 -1081 -1081 215 -1081 -1081 182 -1081 222 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.7e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.111111 0.500000 0.388889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSGTGA MEME-5 regular expression -------------------------------------------------------------------------------- TG[GT][CG]GTGA -------------------------------------------------------------------------------- Time 18.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:1040938-1041018 3.49e-02 20_[+1(1.38e-05)]_23_[+1(1.38e-05)]_\ 21 chrX:30766863-30766943 1.32e-04 48_[+1(2.50e-05)]_24 chr4:87855833-87855913 1.11e-02 41_[+1(1.38e-05)]_31 chr4:123843180-123843260 1.30e-02 25_[+2(1.52e-05)]_47 chr1:11986489-11986569 5.66e-03 21_[+2(2.67e-05)]_51 chr9:108320360-108320440 7.94e-04 26_[+2(4.66e-05)]_13_[+1(1.38e-05)]_\ 25 chr2:167194579-167194659 1.21e-01 80 chr16:77714012-77714092 8.58e-03 9_[+4(4.84e-05)]_2_[+4(6.27e-05)]_\ 53 chrX:135578895-135578975 9.70e-01 80 chr14:57857218-57857298 1.32e-02 32_[+1(2.50e-05)]_40 chr17:7232785-7232865 3.64e-03 44_[+2(1.52e-05)]_28 chrX:153639786-153639866 5.85e-03 49_[+2(6.18e-05)]_23 chr4:77155599-77155679 1.62e-01 80 chr10:75173089-75173169 3.15e-03 4_[+2(1.52e-05)]_68 chr4:123843388-123843468 9.84e-01 80 chr10:33346761-33346841 4.24e-03 48_[+2(2.67e-05)]_24 chr10:115478864-11547894 2.94e-02 15_[+2(6.18e-05)]_57 chr13:109387189-10938726 6.00e-01 80 chr1:46770494-46770574 1.61e-01 47_[+2(6.18e-05)]_25 chr12:63226483-63226563 4.34e-03 27_[+1(2.50e-05)]_45 chr15:59279826-59279906 1.90e-02 20_[+1(2.50e-05)]_52 chr10:31607913-31607993 1.99e-01 80 chr2:101869305-101869385 1.30e-02 18_[+2(6.18e-05)]_20_[+2(1.52e-05)]_\ 26 chr20:36322338-36322418 8.46e-02 5_[+2(1.52e-05)]_67 chr6:88050086-88050166 3.21e-03 46_[+1(2.50e-05)]_26 chr8:33370656-33370736 1.35e-03 65_[+1(2.50e-05)]_7 chr14:36278501-36278581 1.51e-03 80 chr6:28183426-28183506 6.75e-02 31_[+2(1.52e-05)]_41 chr7:66440354-66440434 3.49e-04 47_[+5(3.92e-05)]_14_[+3(1.54e-05)]_\ 3 chr6:6657818-6657898 1.03e-01 80 chr17:4699355-4699435 7.97e-02 80 chr9:115983554-115983634 2.47e-03 41_[+1(2.50e-05)]_31 chr9:101019299-101019379 5.25e-02 80 chr9:7799758-7799838 1.95e-02 49_[+1(4.25e-05)]_23 chr12:7009225-7009305 3.51e-01 80 chr4:6711560-6711640 2.40e-04 58_[+2(4.66e-05)]_4_[+4(4.84e-05)]_\ 2 chr3:15902839-15902919 2.27e-03 52_[+5(5.46e-05)]_20 chr2:145115662-145115742 9.72e-03 18_[+4(4.84e-05)]_54 chr20:2559307-2559387 2.15e-01 31_[+2(6.18e-05)]_41 chr7:106717860-106717940 4.16e-01 80 chr4:142142031-142142111 5.18e-02 4_[+1(7.48e-05)]_8_[+1(2.50e-05)]_\ 52 chr19:1272052-1272132 9.41e-01 80 chr2:120436742-120436822 1.25e-01 7_[+2(4.66e-05)]_65 chr6:27572937-27573017 1.04e-02 11_[+2(2.67e-05)]_61 chr17:62637705-62637785 2.48e-02 41_[+1(1.38e-05)]_31 chr12:51327637-51327717 1.84e-02 24_[+4(3.48e-05)]_48 chr20:30135108-30135188 1.40e-02 38_[+1(1.38e-05)]_34 chr1:46002782-46002862 3.33e-03 14_[+1(1.38e-05)]_58 chr16:67143805-67143885 1.90e-02 11_[+2(1.52e-05)]_61 chr17:4046338-4046418 1.50e-03 49_[+4(4.84e-05)]_23 chr10:3845700-3845780 2.03e-01 80 chr12:48577319-48577399 2.87e-01 80 chr14:96828468-96828548 2.95e-01 80 chr1:46039909-46039989 1.45e-03 80 chr20:5986638-5986718 5.14e-02 48_[+1(2.50e-05)]_24 chr15:101142590-10114267 5.95e-04 28_[+2(1.52e-05)]_44 chr1:77685093-77685173 2.42e-04 39_[+1(1.38e-05)]_15_[+2(6.18e-05)]_\ 10 chr8:86019243-86019323 6.91e-02 80 chr8:41347995-41348075 1.08e-02 5_[+2(1.52e-05)]_67 chr1:228045104-228045184 1.41e-02 18_[+4(3.48e-05)]_54 chr1:10795190-10795270 2.01e-02 45_[+2(1.52e-05)]_27 chr17:79519444-79519524 1.02e-01 9_[+1(1.38e-05)]_23_[+1(4.25e-05)]_\ 32 chr1:87379997-87380077 4.91e-03 44_[+4(4.84e-05)]_28 chr10:105127616-10512769 1.35e-03 28_[+1(1.38e-05)]_14_[+5(5.46e-05)]_\ 22 chr3:133291964-133292044 4.48e-02 80 chr1:168335093-168335173 1.03e-01 80 chr11:107328509-10732858 8.04e-03 65_[+2(2.67e-05)]_7 chr14:104029306-10402938 6.26e-01 80 chr1:171750309-171750389 4.74e-02 5_[+2(2.67e-05)]_67 chr6:119214756-119214836 7.68e-01 80 chr6:112408711-112408791 1.38e-02 9_[+1(7.48e-05)]_63 chr19:46850297-46850377 1.10e-01 48_[+2(4.66e-05)]_24 chr2:205851510-205851590 1.79e-02 80 chr13:95248402-95248482 6.50e-03 60_[+2(6.18e-05)]_12 chr3:43629043-43629123 2.36e-01 80 chr1:5916610-5916690 6.62e-03 44_[+1(1.38e-05)]_28 chr3:129158801-129158881 3.80e-01 80 chr19:8226191-8226271 5.98e-04 2_[+3(1.54e-05)]_33_[+3(1.54e-05)]_\ 29 chr15:36825467-36825547 1.94e-02 48_[+1(1.38e-05)]_24 chr2:152252313-152252393 9.51e-05 48_[+5(3.92e-05)]_14_[+3(1.54e-05)]_\ 2 chr3:180707493-180707573 1.15e-02 53_[+1(4.25e-05)]_3_[+1(2.50e-05)]_\ 8 chrX:119737882-119737962 2.81e-02 50_[+1(1.38e-05)]_22 chr14:75389901-75389981 9.75e-03 38_[+4(1.76e-05)]_34 chr20:52492193-52492273 2.67e-02 37_[+4(4.84e-05)]_35 chr3:174158776-174158856 8.12e-01 80 chr6:160825702-160825782 3.03e-03 41_[+4(4.84e-05)]_31 chr11:47869480-47869560 3.24e-02 [+2(1.52e-05)]_72 chr11:5612915-5612995 4.15e-04 34_[+3(1.54e-05)]_9_[+5(3.92e-05)]_\ 21 chr15:43398285-43398365 4.19e-02 23_[+2(2.67e-05)]_49 chr10:103892343-10389242 5.70e-01 80 chr3:99979766-99979846 1.99e-02 20_[+2(2.67e-05)]_52 chr2:85788675-85788755 9.04e-03 6_[+1(2.50e-05)]_66 chr18:54318501-54318581 1.86e-04 43_[+2(6.18e-05)]_14_[+4(9.39e-05)]_\ 7 chr8:19675818-19675898 4.59e-02 80 chr13:26828036-26828116 6.53e-01 80 chr20:48967516-48967596 9.15e-04 28_[+1(7.48e-05)]_33_[+2(8.05e-05)]_\ 3 chr16:70148132-70148212 4.57e-02 30_[+1(1.38e-05)]_42 chr2:128568294-128568374 3.17e-02 80 chr17:3791838-3791918 5.98e-02 61_[+1(1.38e-05)]_11 chr20:43485696-43485776 7.51e-04 14_[+4(3.48e-05)]_14_[+3(5.83e-05)]_\ 36 chr12:49627791-49627871 4.48e-01 80 chr12:66037947-66038027 3.52e-03 60_[+5(3.92e-05)]_12 chr16:47495049-47495129 7.19e-01 80 chr7:150775293-150775373 1.34e-01 80 chr15:72410706-72410786 4.84e-03 22_[+2(6.18e-05)]_41_[+3(9.80e-05)]_\ 1 chr19:18263451-18263531 3.91e-02 31_[+2(4.66e-05)]_41 chr10:27099513-27099593 7.46e-01 80 chr13:80055210-80055290 8.02e-02 22_[+2(6.18e-05)]_50 chr2:172778722-172778802 1.47e-02 23_[+2(4.66e-05)]_49 chr19:41339782-41339862 1.41e-01 1_[+1(2.50e-05)]_71 chr5:175815036-175815116 2.21e-02 29_[+1(2.50e-05)]_43 chr10:105881869-10588194 5.70e-02 30_[+2(1.52e-05)]_42 chr7:74064619-74064699 9.80e-02 80 chr16:74402093-74402173 6.39e-02 42_[+2(1.52e-05)]_30 chr1:86174095-86174175 2.14e-04 30_[+1(1.38e-05)]_42 chr1:28475002-28475082 4.99e-03 48_[+5(1.94e-05)]_24 chr5:96518951-96519031 1.50e-01 80 chr15:59280108-59280188 9.68e-01 80 chr16:89392549-89392629 7.12e-02 40_[+1(7.48e-05)]_32 chr3:170445106-170445186 8.18e-03 21_[+2(1.52e-05)]_51 chr19:48836322-48836402 3.21e-02 56_[+5(6.96e-05)]_16 chr11:85956141-85956221 4.73e-02 40_[+2(4.66e-05)]_32 chr11:66121418-66121498 2.07e-01 80 chr1:154245004-154245084 3.12e-02 52_[+2(2.67e-05)]_20 chr20:49451479-49451559 1.19e-05 39_[+2(1.52e-05)]_1_[+1(2.50e-05)]_\ 24 chr1:213228555-213228635 2.07e-01 80 chr16:15736982-15737062 5.25e-02 80 chr12:25348258-25348338 9.93e-02 5_[+1(4.25e-05)]_67 chr12:51422144-51422224 9.41e-03 51_[+5(5.46e-05)]_21 chr7:145481983-145482063 2.80e-03 26_[+4(1.76e-05)]_46 chrX:129040072-129040152 1.71e-02 41_[+2(4.66e-05)]_31 chr15:68072143-68072223 6.55e-04 54_[+2(4.66e-05)]_18 chr12:1058929-1059009 4.77e-02 70_[+1(1.38e-05)]_2 chr15:68072344-68072424 7.38e-01 80 chr6:30783336-30783416 4.99e-02 26_[+3(1.54e-05)]_30_[+3(1.54e-05)]_\ 8 chr6:31368316-31368396 5.61e-02 80 chr10:120514479-12051455 5.47e-04 18_[+1(1.38e-05)]_54 chr19:7745740-7745820 5.35e-01 80 chr6:26756691-26756771 9.26e-01 80 chr14:60558733-60558813 9.46e-02 80 chr3:171789836-171789916 1.39e-02 [+1(5.65e-05)]_72 chr7:65570958-65571038 1.25e-04 13_[+5(1.94e-05)]_32_[+4(1.76e-05)]_\ 19 chr16:85833153-85833233 4.10e-03 13_[+1(4.25e-05)]_17_[+2(2.67e-05)]_\ 34 chr6:107780749-107780829 4.17e-05 31_[+1(1.38e-05)]_32_[+2(1.52e-05)]_\ 1 chr4:56815541-56815621 1.93e-01 80 chr4:6675711-6675791 7.47e-03 42_[+1(2.50e-05)]_30 chr8:11660034-11660114 3.20e-04 23_[+4(1.76e-05)]_14_[+3(1.54e-05)]_\ 27 chr5:89704858-89704938 1.99e-01 80 chr1:111682828-111682908 1.58e-02 15_[+5(5.46e-05)]_57 chr7:22862450-22862530 1.04e-03 43_[+2(1.52e-05)]_29 chr3:41068162-41068242 4.92e-01 80 chr8:29120954-29121034 3.88e-01 80 chr1:234659443-234659523 1.58e-01 80 chrX:52950132-52950212 5.04e-02 15_[+1(7.48e-05)]_57 chr20:44465595-44465675 1.28e-01 80 chr19:41370679-41370759 8.71e-01 80 chr11:62341344-62341424 3.46e-01 80 chr7:155437127-155437207 2.88e-01 80 chr9:100807815-100807895 4.96e-03 38_[+1(2.50e-05)]_34 chr4:79550632-79550712 1.19e-02 49_[+4(3.48e-05)]_23 chr1:211431730-211431810 2.90e-01 80 chr22:42177224-42177304 9.27e-03 25_[+2(6.18e-05)]_47 chr19:44952691-44952771 3.41e-02 64_[+1(2.50e-05)]_8 chr11:207560-207640 7.15e-02 80 chr4:88312482-88312562 1.35e-03 67_[+5(5.46e-05)]_5 chr4:159593669-159593749 9.34e-01 80 chr7:65215690-65215770 8.43e-02 80 chrX:52950338-52950418 6.72e-01 80 chr11:11864255-11864335 8.37e-01 80 chr6:150188563-150188643 5.31e-01 80 chr5:159436372-159436452 1.07e-01 63_[+5(5.46e-05)]_9 chr1:39491915-39491995 6.42e-02 80 chr3:141456815-141456895 6.52e-02 29_[+1(1.38e-05)]_43 chr7:130692405-130692485 9.94e-01 80 chr1:169337006-169337086 7.43e-01 80 chr7:119590910-119590990 6.30e-02 25_[+3(1.54e-05)]_47 chr9:33474019-33474099 7.88e-02 51_[+2(1.52e-05)]_21 chr12:30848809-30848889 6.37e-03 42_[+2(1.52e-05)]_30 chr22:42228928-42229008 8.47e-02 47_[+4(3.48e-05)]_25 chr2:108363437-108363517 1.24e-02 16_[+3(1.54e-05)]_30_[+3(1.54e-05)]_\ 18 chr6:35331258-35331338 1.11e-01 38_[+5(3.92e-05)]_34 chr12:123518786-12351886 4.51e-02 57_[+1(4.25e-05)]_15 chr12:6641867-6641947 2.62e-02 5_[+5(5.46e-05)]_67 chr8:92082232-92082312 8.76e-02 42_[+4(6.27e-05)]_30 chr17:56296567-56296647 9.71e-02 49_[+1(4.25e-05)]_23 chr10:18948141-18948221 7.11e-03 62_[+1(7.48e-05)]_10 chr14:21572527-21572607 9.95e-01 80 chr11:125772997-12577307 2.06e-01 80 chr10:33338994-33339074 8.44e-01 80 chr10:102133178-10213325 2.82e-01 80 chr1:38388513-38388593 5.51e-04 42_[+2(1.52e-05)]_30 chr1:46050618-46050698 4.46e-03 20_[+3(5.83e-05)]_52 chr10:72445450-72445530 4.78e-02 36_[+1(2.50e-05)]_36 chr6:151773777-151773857 2.77e-01 80 chr12:53400010-53400090 4.89e-02 80 chr20:49536279-49536359 7.71e-02 13_[+1(4.25e-05)]_59 chr2:223574268-223574348 2.59e-02 65_[+5(6.96e-05)]_7 chr16:69760322-69760402 9.73e-02 42_[+3(1.54e-05)]_30 chr11:66050050-66050130 3.38e-01 80 chr1:224180485-224180565 7.99e-01 80 chr8:22927871-22927951 6.65e-02 29_[+3(1.54e-05)]_30_[+3(1.54e-05)]_\ 5 chr10:70314965-70315045 3.99e-03 42_[+4(1.76e-05)]_30 chr17:56365-56445 6.55e-04 36_[+4(9.39e-05)]_15_[+3(2.74e-05)]_\ 13 chr2:356516-356596 1.26e-01 80 chr4:169931834-169931914 6.98e-01 80 chr3:197466466-197466546 1.25e-04 13_[+5(1.94e-05)]_35_[+4(1.76e-05)]_\ 16 chr6:27573144-27573224 9.52e-01 80 chr12:88535888-88535968 2.66e-02 80 chr12:53835379-53835459 6.42e-01 80 chr3:197754113-197754193 6.23e-01 80 chr9:80602076-80602156 6.55e-01 80 chr2:241500591-241500671 2.53e-01 80 chr4:142253815-142253895 7.78e-02 13_[+3(1.54e-05)]_30_[+3(1.54e-05)]_\ 21 chr3:52719970-52720050 2.79e-02 34_[+2(1.52e-05)]_38 chr16:70148362-70148442 9.99e-01 80 chr3:50359014-50359094 8.87e-01 80 chr17:7589647-7589727 6.14e-02 63_[+4(1.76e-05)]_9 chrX:38660637-38660717 8.99e-04 6_[+3(1.54e-05)]_21_[+5(3.92e-05)]_\ 37 chr6:166796532-166796612 1.85e-01 80 chr13:113377151-11337723 2.60e-02 41_[+1(4.25e-05)]_31 chr3:85553610-85553690 2.72e-02 32_[+3(1.54e-05)]_30_[+3(1.54e-05)]_\ 2 chr16:81130359-81130439 4.78e-03 5_[+1(5.65e-05)]_67 chr2:32264836-32264916 9.25e-02 33_[+1(7.48e-05)]_39 chr1:101491337-101491417 2.42e-03 59_[+2(2.67e-05)]_13 chr17:79630452-79630532 8.51e-05 31_[+5(1.94e-05)]_32_[+4(1.76e-05)]_\ 1 chr19:982490-982570 3.60e-01 80 chr20:247594-247674 5.50e-01 80 chr5:36152300-36152380 8.94e-01 80 chr9:19103039-19103119 6.69e-01 80 chr2:132301058-132301138 1.33e-01 80 chr3:179065524-179065604 1.76e-01 80 chr10:16859706-16859786 2.36e-02 37_[+5(1.94e-05)]_35 chr4:111166807-111166887 1.65e-02 51_[+2(2.67e-05)]_21 chr12:110856208-11085628 6.72e-01 80 chr19:46498415-46498495 1.87e-01 80 chr20:18488202-18488282 5.14e-01 80 chr7:150725331-150725411 5.04e-01 80 chr19:41082716-41082796 9.81e-01 80 chr19:47217205-47217285 1.22e-02 20_[+1(2.50e-05)]_52 chr8:55047681-55047761 8.02e-01 80 chr5:34867419-34867499 5.77e-01 80 chrX:65948853-65948933 5.42e-01 80 chr19:52552058-52552138 7.30e-01 80 chr8:42645191-42645271 6.40e-01 80 chr22:19803106-19803186 1.01e-02 56_[+5(3.92e-05)]_16 chr6:163148922-163149002 1.13e-01 80 chr19:59084817-59084897 1.30e-01 80 chr2:39351293-39351373 8.90e-01 80 chr20:56032461-56032541 3.06e-04 18_[+4(3.48e-05)]_37_[+3(9.80e-05)]_\ 9 chr2:149402928-149403008 1.30e-02 47_[+1(7.48e-05)]_8_[+1(7.48e-05)]_\ 9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************