******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:36235784-36235864 1.0000 80 chr12:4378589-4378669 1.0000 80 chr9:140485160-140485240 1.0000 80 chr2:203103537-203103617 1.0000 80 chr13:48877815-48877895 1.0000 80 chr3:130465645-130465725 1.0000 80 chr2:203103333-203103413 1.0000 80 chr1:155246972-155247052 1.0000 80 chr1:144886703-144886783 1.0000 80 chr11:65679371-65679451 1.0000 80 chr17:37558903-37558983 1.0000 80 chr6:37137521-37137601 1.0000 80 chr11:75863346-75863426 1.0000 80 chr10:69523881-69523961 1.0000 80 chrX:2548734-2548814 1.0000 80 chr19:4909424-4909504 1.0000 80 chr17:30263742-30263822 1.0000 80 chr8:144627972-144628052 1.0000 80 chr19:44172336-44172416 1.0000 80 chr3:194030809-194030889 1.0000 80 chr16:85722529-85722609 1.0000 80 chr15:44119228-44119308 1.0000 80 chr19:9811098-9811178 1.0000 80 chr19:47292086-47292166 1.0000 80 chr3:6560611-6560691 1.0000 80 chr6:90539467-90539547 1.0000 80 chr17:29058430-29058510 1.0000 80 chr2:44769962-44770042 1.0000 80 chr17:21002558-21002638 1.0000 80 chr7:138124155-138124235 1.0000 80 chr22:42342751-42342831 1.0000 80 chr6:84686762-84686842 1.0000 80 chr7:100728598-100728678 1.0000 80 chr11:9595078-9595158 1.0000 80 chr2:219432981-219433061 1.0000 80 chr22:35795964-35796044 1.0000 80 chr6:97731009-97731089 1.0000 80 chr19:48867543-48867623 1.0000 80 chr20:32274223-32274303 1.0000 80 chr12:110151396-11015147 1.0000 80 chr14:23707175-23707255 1.0000 80 chr17:60501144-60501224 1.0000 80 chr5:176005458-176005538 1.0000 80 chr10:103893324-10389340 1.0000 80 chr12:109535832-10953591 1.0000 80 chr4:113558002-113558082 1.0000 80 chr11:74303595-74303675 1.0000 80 chr16:11439215-11439295 1.0000 80 chr3:133380763-133380843 1.0000 80 chr2:58468525-58468605 1.0000 80 chr2:48010289-48010369 1.0000 80 chr1:226595237-226595317 1.0000 80 chr2:136288118-136288198 1.0000 80 chr19:49164353-49164433 1.0000 80 chr20:1448485-1448565 1.0000 80 chr17:42264266-42264346 1.0000 80 chr13:60738057-60738137 1.0000 80 chr2:136634064-136634144 1.0000 80 chr1:155197517-155197597 1.0000 80 chr16:67694095-67694175 1.0000 80 chr18:2302968-2303048 1.0000 80 chr13:34392175-34392255 1.0000 80 chrX:106871378-106871458 1.0000 80 chr19:4328476-4328556 1.0000 80 chr12:56521778-56521858 1.0000 80 chr12:21654530-21654610 1.0000 80 chrX:2548946-2549026 1.0000 80 chr15:100890438-10089051 1.0000 80 chr20:35402139-35402219 1.0000 80 chr6:27113885-27113965 1.0000 80 chr16:88540376-88540456 1.0000 80 chr16:72106902-72106982 1.0000 80 chr6:41040240-41040320 1.0000 80 chrX:153775788-153775868 1.0000 80 chr2:27309445-27309525 1.0000 80 chr1:26232215-26232295 1.0000 80 chr3:48229914-48229994 1.0000 80 chr1:46050421-46050501 1.0000 80 chr6:37016383-37016463 1.0000 80 chr3:129118443-129118523 1.0000 80 chr12:122124952-12212503 1.0000 80 chr17:1227596-1227676 1.0000 80 chrX:2548010-2548090 1.0000 80 chrX:48659853-48659933 1.0000 80 chr20:5100018-5100098 1.0000 80 chr16:2892662-2892742 1.0000 80 chr16:75466924-75467004 1.0000 80 chr16:72699037-72699117 1.0000 80 chr11:77968250-77968330 1.0000 80 chr9:135282195-135282275 1.0000 80 chr19:50887598-50887678 1.0000 80 chr3:127317212-127317292 1.0000 80 chr15:48624336-48624416 1.0000 80 chr6:57182626-57182706 1.0000 80 chr19:13262771-13262851 1.0000 80 chr5:93954304-93954384 1.0000 80 chr19:15375038-15375118 1.0000 80 chr22:38966079-38966159 1.0000 80 chr8:145669673-145669753 1.0000 80 chr10:114206870-11420695 1.0000 80 chr12:6798765-6798845 1.0000 80 chr16:88870151-88870231 1.0000 80 chr7:6865921-6866001 1.0000 80 chr15:40987341-40987421 1.0000 80 chr1:9555461-9555541 1.0000 80 chr4:56719792-56719872 1.0000 80 chr11:45939416-45939496 1.0000 80 chr6:57182414-57182494 1.0000 80 chr11:111472712-11147279 1.0000 80 chr11:73881885-73881965 1.0000 80 chrX:153707400-153707480 1.0000 80 chr17:59940867-59940947 1.0000 80 chr17:58677145-58677225 1.0000 80 chr17:46125880-46125960 1.0000 80 chr8:128748365-128748445 1.0000 80 chr10:74386209-74386289 1.0000 80 chr8:86019327-86019407 1.0000 80 chr13:73356051-73356131 1.0000 80 chr13:114103629-11410370 1.0000 80 chr3:186524157-186524237 1.0000 80 chr9:104296059-104296139 1.0000 80 chr14:64854802-64854882 1.0000 80 chr11:19262613-19262693 1.0000 80 chr20:52195311-52195391 1.0000 80 chr10:103911833-10391191 1.0000 80 chr11:47236547-47236627 1.0000 80 chr1:207921517-207921597 1.0000 80 chr19:55663523-55663603 1.0000 80 chr7:100136417-100136497 1.0000 80 chr2:132250581-132250661 1.0000 80 chr9:130700157-130700237 1.0000 80 chrX:85302328-85302408 1.0000 80 chr9:35079836-35079916 1.0000 80 chr12:31479223-31479303 1.0000 80 chr5:82265183-82265263 1.0000 80 chr6:35420128-35420208 1.0000 80 chr16:75156298-75156378 1.0000 80 chr17:57232226-57232306 1.0000 80 chr9:99180618-99180698 1.0000 80 chr15:66649031-66649111 1.0000 80 chr20:55043845-55043925 1.0000 80 chr9:140022171-140022251 1.0000 80 chr17:40729681-40729761 1.0000 80 chr12:56223359-56223439 1.0000 80 chr5:126114078-126114158 1.0000 80 chr3:50264985-50265065 1.0000 80 chr19:40336345-40336425 1.0000 80 chr15:89164337-89164417 1.0000 80 chr2:203130317-203130397 1.0000 80 chr11:17297820-17297900 1.0000 80 chr1:23857705-23857785 1.0000 80 chr9:98079966-98080046 1.0000 80 chr12:56842975-56843055 1.0000 80 chr7:50267578-50267658 1.0000 80 chr7:7680050-7680130 1.0000 80 chr17:17184480-17184560 1.0000 80 chr4:170678980-170679060 1.0000 80 chr11:95523021-95523101 1.0000 80 chr1:156542311-156542391 1.0000 80 chr17:40333413-40333493 1.0000 80 chr19:7069639-7069719 1.0000 80 chr14:74551612-74551692 1.0000 80 chr1:151253815-151253895 1.0000 80 chr17:18218277-18218357 1.0000 80 chr19:10305292-10305372 1.0000 80 chrX:200024-200104 1.0000 80 chr10:12110660-12110740 1.0000 80 chr10:13203454-13203534 1.0000 80 chr3:15469050-15469130 1.0000 80 chr1:32170876-32170956 1.0000 80 chr15:40397188-40397268 1.0000 80 chr15:91473426-91473506 1.0000 80 chr15:49103382-49103462 1.0000 80 chr1:170501439-170501519 1.0000 80 chr12:31226953-31227033 1.0000 80 chr5:180288535-180288615 1.0000 80 chr5:68485405-68485485 1.0000 80 chr7:2281819-2281899 1.0000 80 chr15:64673667-64673747 1.0000 80 chr12:51632617-51632697 1.0000 80 chr12:56360523-56360603 1.0000 80 chr2:74781520-74781600 1.0000 80 chr12:57146035-57146115 1.0000 80 chr8:22526602-22526682 1.0000 80 chr12:123011749-12301182 1.0000 80 chr11:134339684-13433976 1.0000 80 chr6:52149645-52149725 1.0000 80 chr16:77225003-77225083 1.0000 80 chr11:71639551-71639631 1.0000 80 chr19:36103553-36103633 1.0000 80 chr14:68286443-68286523 1.0000 80 chr8:33370640-33370720 1.0000 80 chr2:47630164-47630244 1.0000 80 chr6:31632899-31632979 1.0000 80 chr21:40555849-40555929 1.0000 80 chr14:51706625-51706705 1.0000 80 chr1:12142027-12142107 1.0000 80 chr3:72897534-72897614 1.0000 80 chr12:54610984-54611064 1.0000 80 chr19:56015116-56015196 1.0000 80 chr2:38846761-38846841 1.0000 80 chr19:50862174-50862254 1.0000 80 chr16:30366634-30366714 1.0000 80 chr11:113535990-11353607 1.0000 80 chr6:32098220-32098300 1.0000 80 chr2:61108681-61108761 1.0000 80 chr5:137549125-137549205 1.0000 80 chr22:38453315-38453395 1.0000 80 chr5:6378631-6378711 1.0000 80 chr19:13928960-13929040 1.0000 80 chr4:99785833-99785913 1.0000 80 chr12:98910302-98910382 1.0000 80 chr11:57298200-57298280 1.0000 80 chr22:41601171-41601251 1.0000 80 chr16:791014-791094 1.0000 80 chr9:34049698-34049778 1.0000 80 chr17:618067-618147 1.0000 80 chr17:40307059-40307139 1.0000 80 chr2:174219383-174219463 1.0000 80 chr2:61766005-61766085 1.0000 80 chr4:39979692-39979772 1.0000 80 chr7:106210093-106210173 1.0000 80 chr3:146262609-146262689 1.0000 80 chr16:67281548-67281628 1.0000 80 chr19:51308153-51308233 1.0000 80 chr19:49891497-49891577 1.0000 80 chr10:11395328-11395408 1.0000 80 chr18:67873208-67873288 1.0000 80 chr6:24721510-24721590 1.0000 80 chrX:102942101-102942181 1.0000 80 chr17:37844293-37844373 1.0000 80 chr1:24117557-24117637 1.0000 80 chr16:68002672-68002752 1.0000 80 chr18:61089732-61089812 1.0000 80 chr19:16296091-16296171 1.0000 80 chr12:56618072-56618152 1.0000 80 chr22:24181364-24181444 1.0000 80 chr7:97601642-97601722 1.0000 80 chr14:75179812-75179892 1.0000 80 chrX:24711931-24712011 1.0000 80 chr16:30389957-30390037 1.0000 80 chrX:85302527-85302607 1.0000 80 chr11:61560395-61560475 1.0000 80 chr8:143791781-143791861 1.0000 80 chr17:73452606-73452686 1.0000 80 chr1:212209046-212209126 1.0000 80 chr16:31085661-31085741 1.0000 80 chr10:104503396-10450347 1.0000 80 chr5:82373292-82373372 1.0000 80 chr17:76374671-76374751 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_E2F8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.193 C 0.307 G 0.298 T 0.202 Background letter frequencies (from file dataset with add-one prior applied): A 0.193 C 0.307 G 0.298 T 0.202 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGGGAAR MEME-1 width = 8 sites = 118 llr = 861 E-value = 5.7e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:1::a96 pos.-specific C 292::::1 probability G 817aa:13 matrix T :::::::: bits 2.4 2.1 * 1.9 ** 1.7 **** Relative 1.4 **** Entropy 1.2 * **** (10.5 bits) 0.9 * **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:30389957-30390037 52 1.74e-05 TGGCGCTCTG GCGGGAAA GCTTACTGCG chr16:67281548-67281628 34 1.74e-05 GGCTAGGAGG GCGGGAAA AACCGAGCTC chr5:137549125-137549205 67 1.74e-05 AGCTACTGAG GCGGGAAA ATTAGA chr12:54610984-54611064 59 1.74e-05 AAAAAAAAAA GCGGGAAA AAAAACAAGC chr6:52149645-52149725 62 1.74e-05 CCCCGCGGTG GCGGGAAA CGTACCATCC chr5:180288535-180288615 72 1.74e-05 TGGGGGCCTG GCGGGAAA T chr17:17184480-17184560 60 1.74e-05 GGCAGCACGC GCGGGAAA AGGCTGCCGC chr7:7680050-7680130 24 1.74e-05 ACTGCGGCTG GCGGGAAA CCCACGGACG chr12:56842975-56843055 23 1.74e-05 AAACCGGGTG GCGGGAAA AGGGACTCAG chr9:98079966-98080046 64 1.74e-05 CCGCGGCGTC GCGGGAAA ATTCCGACG chr19:40336345-40336425 26 1.74e-05 AGTGCAGAAG GCGGGAAA GTGAGCCGAA chr16:75156298-75156378 53 1.74e-05 attaggactg gcgggaaa gttgtttact chr5:82265183-82265263 26 1.74e-05 gactggtttg gcgggaaa aatggttatg chr12:31479223-31479303 62 1.74e-05 GCTCCGCGGC GCGGGAAA CGCGGCGGCC chr20:52195311-52195391 54 1.74e-05 ATACATACTG GCGGGAAA AATTATCTTC chr13:73356051-73356131 42 1.74e-05 AACACTTCTC GCGGGAAA ATGCCGAGAT chr8:86019327-86019407 53 1.74e-05 CACCGTCAAG GCGGGAAA GTTCCCGGCT chr8:128748365-128748445 48 1.74e-05 CAGAGGCTTG GCGGGAAA AAGAACGGAG chr1:9555461-9555541 39 1.74e-05 GGCAGGAAGC GCGGGAAA GCGGCCGCGA chr16:88870151-88870231 11 1.74e-05 cagggcgccc gcgggAAA TTTGGCGGGA chr19:15375038-15375118 48 1.74e-05 CTTCGAGTTG GCGGGAAA AATCCACGCA chr5:93954304-93954384 56 1.74e-05 CTAGCGCGCG GCGGGAAA TTGTTTCCCA chr15:48624336-48624416 16 1.74e-05 GGCGGGGCTG GCGGGAAA TTTCGGTTTT chr19:50887598-50887678 27 1.74e-05 GTAGGCTGTG GCGGGAAA CGCTGTTTGA chr16:72699037-72699117 26 1.74e-05 GCGAGACTCC GCGGGAAA ACTCCCTGCT chr1:46050421-46050501 21 1.74e-05 CCTTGAGGAG GCGGGAAA ACTCCATTGT chr13:34392175-34392255 56 1.74e-05 TTTGGAGCTC GCGGGAAA ACTTGTCTCT chr16:11439215-11439295 72 1.74e-05 CTCAAAGTTG GCGGGAAA G chr19:48867543-48867623 52 1.74e-05 GAGCGAAAAG GCGGGAAA AAGCGGAACC chr22:42342751-42342831 12 1.74e-05 ACCCCCAGAC GCGGGAAA ACCAATTCCA chr7:138124155-138124235 26 1.74e-05 gagtggtttg gcgggaaa aatggttatg chr19:9811098-9811178 27 1.74e-05 GGCAGCCAGC GCGGGAAA AGATAGTGGC chr2:203103333-203103413 33 1.74e-05 GAAAGACAAG GCGGGAAA TGGGTGGGGG chr4:39979692-39979772 25 4.43e-05 AGCCCGGGTG GCGGGAAG CGAGCCCAGG chr12:56360523-56360603 33 4.43e-05 CCAGGGAAAC GCGGGAAG CAGGGGCGGG chr11:47236547-47236627 5 4.43e-05 TTTG GCGGGAAG TTGGCTTAGC chr10:103911833-10391191 27 4.43e-05 GAAAGACTGC GCGGGAAG TCCCGAGTTT chr11:111472712-11147279 58 4.43e-05 AGAGGTTTTG GCGGGAAG GACCCCGGGT chr2:58468525-58468605 28 4.43e-05 CCCAGCCTTG GCGGGAAG ATCCTGGAGG chr9:140485160-140485240 9 4.43e-05 TCAGTTTC GCGGGAAG CTTTGTGCGG chr10:11395328-11395408 44 5.56e-05 ccagcagatg gcaggaaa gcatccctag chr11:77968250-77968330 14 5.56e-05 GATAACATGA GCAGGAAA GGGGTGGTTG chr16:791014-791094 43 7.35e-05 CCGCCACGCT GCCGGAAA GCGCCCCCAG chr3:130465645-130465725 4 9.14e-05 CTC CCGGGAAA GCAACCGGTC chr19:36235784-36235864 65 9.14e-05 GACCAAGTTC CCGGGAAA ACGGCACG chrX:85302527-85302607 14 1.03e-04 CGCCATCTTG ACGGGAAA CGTGTCATGT chr2:203130317-203130397 65 1.30e-04 GCCCGCTGTG GCGGGAAC ATTCTGGA chr6:35420128-35420208 5 1.30e-04 CAGC GCGGGAAC GGCTGCGGCT chr5:176005458-176005538 21 1.30e-04 GCCACAGACG GCGGGAAC CTGTCCTCCT chr2:219432981-219433061 69 1.30e-04 GCGGCTGATG GCGGGAAC TGTG chr6:90539467-90539547 21 1.30e-04 CCTTCCAAAG GCGGGAAC TAGTTGTGGG chr12:56618072-56618152 31 1.65e-04 GAGGCCAGCC GGGGGAAA CTTCCGGGAA chr22:38453315-38453395 55 1.65e-04 ATATCCAGTG GGGGGAAA GCCGGGACTT chr11:95523021-95523101 18 1.65e-04 CTTCCGCGAC GCAGGAAG CGCCCACAAA chr17:60501144-60501224 70 1.65e-04 GGCGTGGTCC GCAGGAAG TTC chr17:29058430-29058510 20 1.65e-04 ACCGGGGCCA GCAGGAAG GCCGCTCCGA chr17:30263742-30263822 69 1.65e-04 ACCGGGGCCA GCAGGAAG GCCG chrX:24711931-24712011 38 1.92e-04 TGGCCTTCCG GCCGGAAG TCCGCAGCCT chr14:75179812-75179892 12 1.92e-04 GCTATCCTTT GCCGGAAG CAGTATGTGA chr7:2281819-2281899 13 1.92e-04 GCAGCGCGCC GCCGGAAG TGCCTGGCCT chr3:15469050-15469130 21 1.92e-04 CCTACCCGAC GCCGGAAG TCCCACGGCC chr19:7069639-7069719 18 1.92e-04 ACCAGCTGGA GCCGGAAG CGGAGGTGCA chr11:19262613-19262693 3 1.92e-04 GG GCCGGAAG CGGGCCTGCG chrX:153775788-153775868 51 1.92e-04 GACACCGGAA GCCGGAAG CGTGGTAGGG chr22:24181364-24181444 65 2.19e-04 CGGTGGTGGC GCGGGAGA ACGTGTGG chr10:12110660-12110740 40 2.19e-04 AACACTCCTG GCGGGAGA CTACAGGCGC chr6:37016383-37016463 8 2.19e-04 GGGGAAG GCGGGAGA TTTATCCTGG chr7:100728598-100728678 53 2.19e-04 gggggccttg gcgggaga ggacggggcc chr2:44769962-44770042 68 2.19e-04 AGGTCAGATG GCGGGAGA TCCTG chr17:37558903-37558983 32 2.19e-04 CGTCACTTTG GCGGGAGA AACAAGCGTG chr1:144886703-144886783 40 2.19e-04 GTCCTGGATG GCGGGAGA TGATGGCTTA chr16:30366634-30366714 5 2.47e-04 GCGC CCGGGAAG CCCGGAAGTG chr11:71639551-71639631 68 2.59e-04 GGTGCTGCAG CCAGGAAA ATACA chr2:61766005-61766085 46 2.95e-04 GCCTGAGCCC GCGGGAAT CAGGATCCGC chr15:40987341-40987421 26 2.95e-04 AGAGGGTTTG GCGGGAAT TCTGAAAGCC chr7:6865921-6866001 24 2.95e-04 TCGCCGCAGG CCCGGAAA AAGAATCCGC chr11:65679371-65679451 32 2.95e-04 AGAGATTTTG GCGGGAAT GCTTCGCTGC chr5:82373292-82373372 14 3.49e-04 GCTCCTCTCC ACCGGAAA AGGCGGGATT chr3:72897534-72897614 41 3.49e-04 CTCCCCACGC GCAGGAAC TCTCGGTGTG chr16:31085661-31085741 42 4.42e-04 CGGAAGTTTC GCGGGGAA GCTTTTGCAC chr11:57298200-57298280 40 4.42e-04 GTTACTTCCG GGAGGAAA GTCCCGCCTC chr2:38846761-38846841 55 4.42e-04 aagcatcttg gcggggaa tttcaatgag chr14:68286443-68286523 73 4.42e-04 GGCGTTTTCC GCGGGGAA chr1:170501439-170501519 55 4.42e-04 TGCAGCTTTG GCGGGGAA AGGGGGCGTG chr1:151253815-151253895 35 4.42e-04 CATGCTGGGG GCGGGGAA AAGGGGAGCC chrX:102942101-102942181 29 5.29e-04 AAATAGGATA GGCGGAAA TGAGCTAAGG chr6:57182414-57182494 33 5.29e-04 CTCCCGCCAC CCGGGAAC AGTGGCTGCC chr12:6798765-6798845 39 5.29e-04 GATAACTCGG GGCGGAAA TAGCTTCTGC chr19:13262771-13262851 10 5.29e-04 GCCAGTGCG GGCGGAAA GGGGGCGGGG chr1:26232215-26232295 60 5.29e-04 GGGGCAGGCC CCGGGAAC AGGCCCCCGG chr19:56015116-56015196 35 5.47e-04 TCCCGCTCCC GCAGGAGA GTCTCGCCGC chr7:97601642-97601722 41 6.10e-04 TCGCCGCCGA CCAGGAAG AAGAACCCGC chr8:22526602-22526682 42 6.10e-04 CAACCAGTCT CCAGGAAG TGACGTAAGC chr6:27113885-27113965 24 6.10e-04 GCGCCAAGAG CCAGGAAG CACTTTCTGT chr11:74303595-74303675 1 6.10e-04 . CGGGGAAA CGACCCGGGA chr19:16296091-16296171 13 6.38e-04 CCGCCCACTA CCCGGAAG TGTGGCCCGG chr16:77225003-77225083 50 6.38e-04 AGGGGTCGTA CCCGGAAG TGTGGCACCT chr3:50264985-50265065 23 6.38e-04 CTAGAGAGGC CCCGGAAG AGGCGGTGCA chr9:104296059-104296139 71 6.38e-04 GGCCCCGCCT CCCGGAAG TT chr13:114103629-11410370 49 6.38e-04 GAGAGACACA CCCGGAAG GAGGGACCCT chr9:135282195-135282275 12 6.38e-04 TTTCTCCCAA CCCGGAAG TGCTGCTGTT chr22:35795964-35796044 4 6.38e-04 GAG CCCGGAAG GAGGCGAGGT chr3:127317212-127317292 48 7.14e-04 ACCACTTTTC GCGCGAAA CCTGGTTGTT chr20:5100018-5100098 1 7.14e-04 . GCGCGAAA AAGCAGGTTC chr3:133380763-133380843 10 7.14e-04 TTGCCCAGA ACGGGAAC CGACTTTCGC chr10:103893324-10389340 28 7.14e-04 AGCAATTTTC CCGGGAGA ACTTGTCTGC chr20:32274223-32274303 53 7.14e-04 CCCGGCCGTG ACGGGAAC AACGGCGGCG chr12:51632617-51632697 12 7.66e-04 GTAGCTCCGA ACAGGAAG AGGACGAAAA chr10:114206870-11420695 50 7.66e-04 TAAAGTCGGA GCGGAAAA TAAAGCACGC chrX:106871378-106871458 39 7.66e-04 GCGCTGAGGG AGGGGAAA TAAAAAAGCA chr17:37844293-37844373 39 8.29e-04 TTCCGGAGTA ACCGGAAG TTCCTGTGTT chr19:10305292-10305372 37 8.29e-04 GGCACGCGCG ACCGGAAG TGCCACCCTG chr7:100136417-100136497 31 8.29e-04 TTGAAATTTG CCGGGAAT TAACGTCATC chr4:56719792-56719872 55 8.29e-04 AGGAAGTGTT GGGGGAAC GGCCGCTTCC chr16:68002672-68002752 7 9.48e-04 CCCTGG GCGGGAGC ACTCCTAGTG chr22:41601171-41601251 43 9.48e-04 GGAGAGAATG GCGGGAGC AGGCACGGAA chr8:145669673-145669753 73 9.48e-04 CCGCGCCCCC GGAGGAAG chr17:46125880-46125960 33 1.10e-03 GTGCTGAGGT GCAGGAGG CGGGGGCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30389957-30390037 1.7e-05 51_[+1]_21 chr16:67281548-67281628 1.7e-05 33_[+1]_39 chr5:137549125-137549205 1.7e-05 66_[+1]_6 chr12:54610984-54611064 1.7e-05 58_[+1]_14 chr6:52149645-52149725 1.7e-05 61_[+1]_11 chr5:180288535-180288615 1.7e-05 71_[+1]_1 chr17:17184480-17184560 1.7e-05 59_[+1]_13 chr7:7680050-7680130 1.7e-05 23_[+1]_49 chr12:56842975-56843055 1.7e-05 22_[+1]_50 chr9:98079966-98080046 1.7e-05 63_[+1]_9 chr19:40336345-40336425 1.7e-05 25_[+1]_47 chr16:75156298-75156378 1.7e-05 52_[+1]_20 chr5:82265183-82265263 1.7e-05 25_[+1]_47 chr12:31479223-31479303 1.7e-05 61_[+1]_11 chr20:52195311-52195391 1.7e-05 53_[+1]_19 chr13:73356051-73356131 1.7e-05 41_[+1]_31 chr8:86019327-86019407 1.7e-05 52_[+1]_20 chr8:128748365-128748445 1.7e-05 47_[+1]_25 chr1:9555461-9555541 1.7e-05 38_[+1]_34 chr16:88870151-88870231 1.7e-05 10_[+1]_62 chr19:15375038-15375118 1.7e-05 47_[+1]_25 chr5:93954304-93954384 1.7e-05 55_[+1]_17 chr15:48624336-48624416 1.7e-05 15_[+1]_57 chr19:50887598-50887678 1.7e-05 26_[+1]_46 chr16:72699037-72699117 1.7e-05 25_[+1]_47 chr1:46050421-46050501 1.7e-05 20_[+1]_52 chr13:34392175-34392255 1.7e-05 55_[+1]_17 chr16:11439215-11439295 1.7e-05 71_[+1]_1 chr19:48867543-48867623 1.7e-05 51_[+1]_21 chr22:42342751-42342831 1.7e-05 11_[+1]_61 chr7:138124155-138124235 1.7e-05 25_[+1]_47 chr19:9811098-9811178 1.7e-05 26_[+1]_46 chr2:203103333-203103413 1.7e-05 32_[+1]_40 chr4:39979692-39979772 4.4e-05 24_[+1]_48 chr12:56360523-56360603 4.4e-05 32_[+1]_40 chr11:47236547-47236627 4.4e-05 4_[+1]_68 chr10:103911833-10391191 4.4e-05 26_[+1]_46 chr11:111472712-11147279 4.4e-05 57_[+1]_15 chr2:58468525-58468605 4.4e-05 27_[+1]_45 chr9:140485160-140485240 4.4e-05 8_[+1]_64 chr10:11395328-11395408 5.6e-05 43_[+1]_29 chr11:77968250-77968330 5.6e-05 13_[+1]_59 chr16:791014-791094 7.3e-05 42_[+1]_30 chr3:130465645-130465725 9.1e-05 3_[+1]_69 chr19:36235784-36235864 9.1e-05 64_[+1]_8 chrX:85302527-85302607 0.0001 13_[+1]_59 chr2:203130317-203130397 0.00013 64_[+1]_8 chr6:35420128-35420208 0.00013 4_[+1]_68 chr5:176005458-176005538 0.00013 20_[+1]_52 chr2:219432981-219433061 0.00013 68_[+1]_4 chr6:90539467-90539547 0.00013 20_[+1]_52 chr12:56618072-56618152 0.00016 30_[+1]_42 chr22:38453315-38453395 0.00016 54_[+1]_18 chr11:95523021-95523101 0.00016 17_[+1]_55 chr17:60501144-60501224 0.00016 69_[+1]_3 chr17:29058430-29058510 0.00016 19_[+1]_53 chr17:30263742-30263822 0.00016 68_[+1]_4 chrX:24711931-24712011 0.00019 37_[+1]_35 chr14:75179812-75179892 0.00019 11_[+1]_61 chr7:2281819-2281899 0.00019 12_[+1]_60 chr3:15469050-15469130 0.00019 20_[+1]_52 chr19:7069639-7069719 0.00019 17_[+1]_55 chr11:19262613-19262693 0.00019 2_[+1]_70 chrX:153775788-153775868 0.00019 50_[+1]_22 chr22:24181364-24181444 0.00022 64_[+1]_8 chr10:12110660-12110740 0.00022 39_[+1]_33 chr6:37016383-37016463 0.00022 7_[+1]_65 chr7:100728598-100728678 0.00022 52_[+1]_20 chr2:44769962-44770042 0.00022 67_[+1]_5 chr17:37558903-37558983 0.00022 31_[+1]_41 chr1:144886703-144886783 0.00022 39_[+1]_33 chr16:30366634-30366714 0.00025 4_[+1]_68 chr11:71639551-71639631 0.00026 67_[+1]_5 chr2:61766005-61766085 0.0003 45_[+1]_27 chr15:40987341-40987421 0.0003 25_[+1]_47 chr7:6865921-6866001 0.0003 23_[+1]_49 chr11:65679371-65679451 0.0003 31_[+1]_41 chr5:82373292-82373372 0.00035 13_[+1]_59 chr3:72897534-72897614 0.00035 40_[+1]_32 chr16:31085661-31085741 0.00044 41_[+1]_31 chr11:57298200-57298280 0.00044 39_[+1]_33 chr2:38846761-38846841 0.00044 54_[+1]_18 chr14:68286443-68286523 0.00044 72_[+1] chr1:170501439-170501519 0.00044 54_[+1]_18 chr1:151253815-151253895 0.00044 34_[+1]_38 chrX:102942101-102942181 0.00053 28_[+1]_44 chr6:57182414-57182494 0.00053 32_[+1]_40 chr12:6798765-6798845 0.00053 38_[+1]_34 chr19:13262771-13262851 0.00053 9_[+1]_63 chr1:26232215-26232295 0.00053 59_[+1]_13 chr19:56015116-56015196 0.00055 34_[+1]_38 chr7:97601642-97601722 0.00061 40_[+1]_32 chr8:22526602-22526682 0.00061 41_[+1]_31 chr6:27113885-27113965 0.00061 23_[+1]_49 chr11:74303595-74303675 0.00061 [+1]_72 chr19:16296091-16296171 0.00064 12_[+1]_60 chr16:77225003-77225083 0.00064 49_[+1]_23 chr3:50264985-50265065 0.00064 22_[+1]_50 chr9:104296059-104296139 0.00064 70_[+1]_2 chr13:114103629-11410370 0.00064 48_[+1]_24 chr9:135282195-135282275 0.00064 11_[+1]_61 chr22:35795964-35796044 0.00064 3_[+1]_69 chr3:127317212-127317292 0.00071 47_[+1]_25 chr20:5100018-5100098 0.00071 [+1]_72 chr3:133380763-133380843 0.00071 9_[+1]_63 chr10:103893324-10389340 0.00071 27_[+1]_45 chr20:32274223-32274303 0.00071 52_[+1]_20 chr12:51632617-51632697 0.00077 11_[+1]_61 chr10:114206870-11420695 0.00077 49_[+1]_23 chrX:106871378-106871458 0.00077 38_[+1]_34 chr17:37844293-37844373 0.00083 38_[+1]_34 chr19:10305292-10305372 0.00083 36_[+1]_36 chr7:100136417-100136497 0.00083 30_[+1]_42 chr4:56719792-56719872 0.00083 54_[+1]_18 chr16:68002672-68002752 0.00095 6_[+1]_66 chr22:41601171-41601251 0.00095 42_[+1]_30 chr8:145669673-145669753 0.00095 72_[+1] chr17:46125880-46125960 0.0011 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGAAR width=8 seqs=118 chr16:30389957-30390037 ( 52) GCGGGAAA 1 chr16:67281548-67281628 ( 34) GCGGGAAA 1 chr5:137549125-137549205 ( 67) GCGGGAAA 1 chr12:54610984-54611064 ( 59) GCGGGAAA 1 chr6:52149645-52149725 ( 62) GCGGGAAA 1 chr5:180288535-180288615 ( 72) GCGGGAAA 1 chr17:17184480-17184560 ( 60) GCGGGAAA 1 chr7:7680050-7680130 ( 24) GCGGGAAA 1 chr12:56842975-56843055 ( 23) GCGGGAAA 1 chr9:98079966-98080046 ( 64) GCGGGAAA 1 chr19:40336345-40336425 ( 26) GCGGGAAA 1 chr16:75156298-75156378 ( 53) GCGGGAAA 1 chr5:82265183-82265263 ( 26) GCGGGAAA 1 chr12:31479223-31479303 ( 62) GCGGGAAA 1 chr20:52195311-52195391 ( 54) GCGGGAAA 1 chr13:73356051-73356131 ( 42) GCGGGAAA 1 chr8:86019327-86019407 ( 53) GCGGGAAA 1 chr8:128748365-128748445 ( 48) GCGGGAAA 1 chr1:9555461-9555541 ( 39) GCGGGAAA 1 chr16:88870151-88870231 ( 11) GCGGGAAA 1 chr19:15375038-15375118 ( 48) GCGGGAAA 1 chr5:93954304-93954384 ( 56) GCGGGAAA 1 chr15:48624336-48624416 ( 16) GCGGGAAA 1 chr19:50887598-50887678 ( 27) GCGGGAAA 1 chr16:72699037-72699117 ( 26) GCGGGAAA 1 chr1:46050421-46050501 ( 21) GCGGGAAA 1 chr13:34392175-34392255 ( 56) GCGGGAAA 1 chr16:11439215-11439295 ( 72) GCGGGAAA 1 chr19:48867543-48867623 ( 52) GCGGGAAA 1 chr22:42342751-42342831 ( 12) GCGGGAAA 1 chr7:138124155-138124235 ( 26) GCGGGAAA 1 chr19:9811098-9811178 ( 27) GCGGGAAA 1 chr2:203103333-203103413 ( 33) GCGGGAAA 1 chr4:39979692-39979772 ( 25) GCGGGAAG 1 chr12:56360523-56360603 ( 33) GCGGGAAG 1 chr11:47236547-47236627 ( 5) GCGGGAAG 1 chr10:103911833-10391191 ( 27) GCGGGAAG 1 chr11:111472712-11147279 ( 58) GCGGGAAG 1 chr2:58468525-58468605 ( 28) GCGGGAAG 1 chr9:140485160-140485240 ( 9) GCGGGAAG 1 chr10:11395328-11395408 ( 44) GCAGGAAA 1 chr11:77968250-77968330 ( 14) GCAGGAAA 1 chr16:791014-791094 ( 43) GCCGGAAA 1 chr3:130465645-130465725 ( 4) CCGGGAAA 1 chr19:36235784-36235864 ( 65) CCGGGAAA 1 chrX:85302527-85302607 ( 14) ACGGGAAA 1 chr2:203130317-203130397 ( 65) GCGGGAAC 1 chr6:35420128-35420208 ( 5) GCGGGAAC 1 chr5:176005458-176005538 ( 21) GCGGGAAC 1 chr2:219432981-219433061 ( 69) GCGGGAAC 1 chr6:90539467-90539547 ( 21) GCGGGAAC 1 chr12:56618072-56618152 ( 31) GGGGGAAA 1 chr22:38453315-38453395 ( 55) GGGGGAAA 1 chr11:95523021-95523101 ( 18) GCAGGAAG 1 chr17:60501144-60501224 ( 70) GCAGGAAG 1 chr17:29058430-29058510 ( 20) GCAGGAAG 1 chr17:30263742-30263822 ( 69) GCAGGAAG 1 chrX:24711931-24712011 ( 38) GCCGGAAG 1 chr14:75179812-75179892 ( 12) GCCGGAAG 1 chr7:2281819-2281899 ( 13) GCCGGAAG 1 chr3:15469050-15469130 ( 21) GCCGGAAG 1 chr19:7069639-7069719 ( 18) GCCGGAAG 1 chr11:19262613-19262693 ( 3) GCCGGAAG 1 chrX:153775788-153775868 ( 51) GCCGGAAG 1 chr22:24181364-24181444 ( 65) GCGGGAGA 1 chr10:12110660-12110740 ( 40) GCGGGAGA 1 chr6:37016383-37016463 ( 8) GCGGGAGA 1 chr7:100728598-100728678 ( 53) GCGGGAGA 1 chr2:44769962-44770042 ( 68) GCGGGAGA 1 chr17:37558903-37558983 ( 32) GCGGGAGA 1 chr1:144886703-144886783 ( 40) GCGGGAGA 1 chr16:30366634-30366714 ( 5) CCGGGAAG 1 chr11:71639551-71639631 ( 68) CCAGGAAA 1 chr2:61766005-61766085 ( 46) GCGGGAAT 1 chr15:40987341-40987421 ( 26) GCGGGAAT 1 chr7:6865921-6866001 ( 24) CCCGGAAA 1 chr11:65679371-65679451 ( 32) GCGGGAAT 1 chr5:82373292-82373372 ( 14) ACCGGAAA 1 chr3:72897534-72897614 ( 41) GCAGGAAC 1 chr16:31085661-31085741 ( 42) GCGGGGAA 1 chr11:57298200-57298280 ( 40) GGAGGAAA 1 chr2:38846761-38846841 ( 55) GCGGGGAA 1 chr14:68286443-68286523 ( 73) GCGGGGAA 1 chr1:170501439-170501519 ( 55) GCGGGGAA 1 chr1:151253815-151253895 ( 35) GCGGGGAA 1 chrX:102942101-102942181 ( 29) GGCGGAAA 1 chr6:57182414-57182494 ( 33) CCGGGAAC 1 chr12:6798765-6798845 ( 39) GGCGGAAA 1 chr19:13262771-13262851 ( 10) GGCGGAAA 1 chr1:26232215-26232295 ( 60) CCGGGAAC 1 chr19:56015116-56015196 ( 35) GCAGGAGA 1 chr7:97601642-97601722 ( 41) CCAGGAAG 1 chr8:22526602-22526682 ( 42) CCAGGAAG 1 chr6:27113885-27113965 ( 24) CCAGGAAG 1 chr11:74303595-74303675 ( 1) CGGGGAAA 1 chr19:16296091-16296171 ( 13) CCCGGAAG 1 chr16:77225003-77225083 ( 50) CCCGGAAG 1 chr3:50264985-50265065 ( 23) CCCGGAAG 1 chr9:104296059-104296139 ( 71) CCCGGAAG 1 chr13:114103629-11410370 ( 49) CCCGGAAG 1 chr9:135282195-135282275 ( 12) CCCGGAAG 1 chr22:35795964-35796044 ( 4) CCCGGAAG 1 chr3:127317212-127317292 ( 48) GCGCGAAA 1 chr20:5100018-5100098 ( 1) GCGCGAAA 1 chr3:133380763-133380843 ( 10) ACGGGAAC 1 chr10:103893324-10389340 ( 28) CCGGGAGA 1 chr20:32274223-32274303 ( 53) ACGGGAAC 1 chr12:51632617-51632697 ( 12) ACAGGAAG 1 chr10:114206870-11420695 ( 50) GCGGAAAA 1 chrX:106871378-106871458 ( 39) AGGGGAAA 1 chr17:37844293-37844373 ( 39) ACCGGAAG 1 chr19:10305292-10305372 ( 37) ACCGGAAG 1 chr7:100136417-100136497 ( 31) CCGGGAAT 1 chr4:56719792-56719872 ( 55) GGGGGAAC 1 chr16:68002672-68002752 ( 7) GCGGGAGC 1 chr22:41601171-41601251 ( 43) GCGGGAGC 1 chr8:145669673-145669753 ( 73) GGAGGAAG 1 chr17:46125880-46125960 ( 33) GCAGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.92472 E= 5.7e-058 -151 -86 136 -1353 -1353 158 -181 -1353 -51 -72 119 -1353 -1353 -418 172 -1353 -451 -1353 173 -1353 231 -1353 -281 -1353 222 -1353 -155 -1353 155 -148 -5 -257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 5.7e-058 0.067797 0.169492 0.762712 0.000000 0.000000 0.915254 0.084746 0.000000 0.135593 0.186441 0.677966 0.000000 0.000000 0.016949 0.983051 0.000000 0.008475 0.000000 0.991525 0.000000 0.957627 0.000000 0.042373 0.000000 0.898305 0.000000 0.101695 0.000000 0.567797 0.110169 0.288136 0.033898 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAR MEME-1 regular expression -------------------------------------------------------------------------------- GCGGGAA[AG] -------------------------------------------------------------------------------- Time 4.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCCGC MEME-2 width = 8 sites = 85 llr = 689 E-value = 1.0e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 12:aaa:9 probability G 2:::::a1 matrix T 68a::::: bits 2.4 2.1 * 1.9 * 1.7 ***** Relative 1.4 ****** Entropy 1.2 ******* (11.7 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCCGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:106210093-106210173 9 2.18e-05 taaccatt tttcccgc caaaccactc chr12:98910302-98910382 9 2.18e-05 TCGAGCGT TTTCCCGC TTTATTAACT chr4:99785833-99785913 37 2.18e-05 cataaccttt tttcccgc caaccactca chr19:13928960-13929040 9 2.18e-05 CAGCTCTT TTTCCCGC CACCTAGTGC chr19:56015116-56015196 61 2.18e-05 GCAAGCGTCC TTTCCCGC CTTTTTTTTT chr6:31632899-31632979 9 2.18e-05 GGGTTCAG TTTCCCGC GCTGGAACTT chr15:64673667-64673747 11 2.18e-05 TATTGGTCTC TTTCCCGC GCGCTCCAAG chr15:91473426-91473506 42 2.18e-05 AGTCACCGAG TTTCCCGC GCGGCTTGAG chr1:32170876-32170956 30 2.18e-05 AGGCCTGGGA TTTCCCGC CTCCAGACCC chr14:74551612-74551692 22 2.18e-05 GGAACCTCGT TTTCCCGC CGACGGTTGG chr17:40333413-40333493 39 2.18e-05 CCTCGCGGGT TTTCCCGC GCGGCGTCCA chr15:89164337-89164417 35 2.18e-05 CTCTTTAAAA TTTCCCGC CAGTATGGCC chr17:40729681-40729761 28 2.18e-05 ACTCATCGCC TTTCCCGC CACCCAACTC chr9:99180618-99180698 48 2.18e-05 TGCCCCGGCT TTTCCCGC GTTACATTTC chr2:132250581-132250661 19 2.18e-05 TAGAAGCGCT TTTCCCGC CCGGCCGCGG chr10:103911833-10391191 43 2.18e-05 AGTCCCGAGT TTTCCCGC CACGCCGAGG chr14:64854802-64854882 5 2.18e-05 CGGG TTTCCCGC CGAATACAAA chr15:100890438-10089051 34 2.18e-05 CGTGCCCCAC TTTCCCGC GTCAGCCTGG chr12:56521778-56521858 39 2.18e-05 CTTTCTTCCT TTTCCCGC CATCTCAGAC chrX:106871378-106871458 68 2.18e-05 GCATGGTTGA TTTCCCGC TAGCG chr16:67694095-67694175 66 2.18e-05 CGGGCCCGGG TTTCCCGC GGGCGCC chr1:155197517-155197597 11 2.18e-05 GTCTCAGCGC TTTCCCGC CAGCACACCC chr11:74303595-74303675 39 2.18e-05 AGCAAAGACG TTTCCCGC CGGCGGGAGC chr17:60501144-60501224 27 2.18e-05 CGCCACCCTT TTTCCCGC CCAGACTCCG chr14:23707175-23707255 5 2.18e-05 TTAC TTTCCCGC CATGTCCAGC chr6:84686762-84686842 24 2.18e-05 cataaccatt tttcccgc caaaccactc chr17:29058430-29058510 46 2.18e-05 GACCCCTAAT TTTCCCGC GAATTCAGTT chr19:47292086-47292166 9 2.18e-05 GGGTGCTG TTTCCCGC CAAAGGAACT chr16:85722529-85722609 55 2.18e-05 CGGCCGCCGT TTTCCCGC CACGGCGAGA chr8:144627972-144628052 40 2.18e-05 catacccatt tttcccgc caaaccactc chr1:155246972-155247052 30 2.18e-05 CGCGTCCGAT TTTCCCGC CACTGCAGGG chr13:48877815-48877895 47 2.18e-05 GAAGTGACGT TTTCCCGC GGTTGGACGC chr11:17297820-17297900 8 4.27e-05 CGTTAAG ATTCCCGC CAAGGCGGAG chr17:59940867-59940947 13 4.27e-05 CCCGAGACGA ATTCCCGC CTCCCGCCCC chr20:1448485-1448565 8 4.27e-05 aattgcc attcccgc ggaaactctt chr6:97731009-97731089 51 4.27e-05 AACAGGCGAA ATTCCCGC CACCGCGCGC chrX:102942101-102942181 46 7.49e-05 ATGAGCTAAG GTTCCCGC GAGTGGGGAA chr4:39979692-39979772 42 7.49e-05 GCGAGCCCAG GTTCCCGC GGCCTTGCGA chr3:72897534-72897614 7 7.49e-05 CGCCGC GTTCCCGC CACGCAAACT chr17:46125880-46125960 56 7.49e-05 GCCGAGCGGG GTTCCCGC CAGAGCCCGG chrX:153707400-153707480 8 7.49e-05 GTGGTCA GTTCCCGC CAAGCGGCCC chr16:75466924-75467004 17 7.49e-05 CCATGTGCCG GTTCCCGC GCTGCAAGAG chr2:27309445-27309525 65 7.49e-05 GGCGCTCTGC GTTCCCGC CACGTGAG chr11:9595078-9595158 7 7.49e-05 CAGCGG GTTCCCGC CAAAATCGCG chr11:75863346-75863426 3 7.49e-05 CC GTTCCCGC CATTCCTTCC chr12:123011749-12301182 38 1.08e-04 GGTTTAGTGT TCTCCCGC CAATTTAAGC chr1:156542311-156542391 35 1.08e-04 CAGGTTTGAA TCTCCCGC CGTTGGGCCA chr17:57232226-57232306 46 1.08e-04 ACCCTCAGCA TCTCCCGC CATTTCCCTG chr6:57182414-57182494 22 1.08e-04 TCATATGAAC TCTCCCGC CACCCGGGAA chr12:122124952-12212503 25 1.08e-04 GGACCCACAA TCTCCCGC GCAATTAACC chr4:113558002-113558082 37 1.08e-04 CTTTCGAATT TCTCCCGC GAAACAACGT chr1:226595237-226595317 60 1.29e-04 GCAGACTTTA TTTCCCGG GCTTTTCCTG chr11:113535990-11353607 50 1.62e-04 tgtaacggct cttcccgc caaagctgtc chr4:170678980-170679060 28 1.62e-04 CGGGCCTGCG CTTCCCGC CACCGCCGAC chr5:126114078-126114158 7 1.62e-04 AGGGAC CTTCCCGC AGCATCCGCG chr16:2892662-2892742 38 1.62e-04 TTCCGACAAA CTTCCCGC GCTCTTCCGG chr12:21654530-21654610 11 1.62e-04 GGAGTAAAAT CTTCCCGC CAGCCAGCTG chr3:6560611-6560691 30 1.62e-04 cacaatggcc cttcccgc caaaattgtc chr12:56618072-56618152 56 1.94e-04 GAATGTCCGC ACTCCCGC GTTCCACGGG chr15:40397188-40397268 50 1.94e-04 AACTTCTCAG ACTCCCGC CAGAACTGCT chrX:85302328-85302408 6 1.94e-04 TGCCA ACTCCCGC GCTGACTCCG chr20:35402139-35402219 58 1.94e-04 CGCCTCCGAA ACTCCCGC CAACCAAGGG chr13:60738057-60738137 10 1.94e-04 CATCTGAAA ACTCCCGC CACCCGTGTT chr2:136288118-136288198 4 1.94e-04 CCA ACTCCCGC CACAGGTTTG chr3:194030809-194030889 23 1.94e-04 TAGAATCAGT ACTCCCGC CAAAGCAGCA chr2:61766005-61766085 16 2.43e-04 GCCCCCACCG GCTCCCGC CAACCTGCGG chr5:6378631-6378711 27 2.43e-04 GTGGCCCTAC GCTCCCGC TTCCTGCTTC chr9:98079966-98080046 50 2.43e-04 GGCCCCGCGC GCTCCCGC GGCGTCGCGG chr6:37137521-37137601 25 2.43e-04 CCTACACCCA GCTCCCGC CTCCCCTCAC chr12:56842975-56843055 43 2.57e-04 GGACTCAGCG TTTCCCGA GAATGCCCCC chr17:37558903-37558983 73 2.57e-04 GCGGGGGCGT TTTCCCGA chr9:140022171-140022251 39 2.77e-04 tgaaaaagaa attcccgg cccttttaag chr13:73356051-73356131 16 2.77e-04 TTCCCTTTCC ATTCCCGG ATATTAGTAA chr1:24117557-24117637 72 3.29e-04 CGATGGCTGG GTTCCCGG G chr5:180288535-180288615 51 3.29e-04 GTGCGGGGAC GTTCCCGG AAGTGGGGGC chr8:86019327-86019407 61 3.29e-04 AGGCGGGAAA GTTCCCGG CTGTCGGTTG chr2:136634064-136634144 28 3.29e-04 GAGCTGGAGA TTTCGCGC CAAACCTGAC chr3:133380763-133380843 22 3.29e-04 GGGAACCGAC TTTCGCGC CAACCGCGCG chr16:72106902-72106982 65 3.62e-04 cacaatggct tctcccgg caaaactg chr19:44172336-44172416 17 3.62e-04 CTCCAGAGCC TCTCCCGG CCCACTAATT chr11:73881885-73881965 10 4.12e-04 AAGCAGTAT CCTCCCGC CATCCCTCCC chr6:52149645-52149725 38 4.41e-04 CTTCTTCGGG TTTTCCGC TGCGCGCCCC chr6:27113885-27113965 51 4.41e-04 TTAACACAAG TTTCCTGC ACATCCCTAA chr22:41601171-41601251 19 4.74e-04 CGCCCGCGGC TTCCCCGC CCACAGGGAG chr18:2302968-2303048 40 4.74e-04 agtaaataac ttccccgc cagttctaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:106210093-106210173 2.2e-05 8_[+2]_64 chr12:98910302-98910382 2.2e-05 8_[+2]_64 chr4:99785833-99785913 2.2e-05 36_[+2]_36 chr19:13928960-13929040 2.2e-05 8_[+2]_64 chr19:56015116-56015196 2.2e-05 60_[+2]_12 chr6:31632899-31632979 2.2e-05 8_[+2]_64 chr15:64673667-64673747 2.2e-05 10_[+2]_62 chr15:91473426-91473506 2.2e-05 41_[+2]_31 chr1:32170876-32170956 2.2e-05 29_[+2]_43 chr14:74551612-74551692 2.2e-05 21_[+2]_51 chr17:40333413-40333493 2.2e-05 38_[+2]_34 chr15:89164337-89164417 2.2e-05 34_[+2]_38 chr17:40729681-40729761 2.2e-05 27_[+2]_45 chr9:99180618-99180698 2.2e-05 47_[+2]_25 chr2:132250581-132250661 2.2e-05 18_[+2]_54 chr10:103911833-10391191 2.2e-05 42_[+2]_30 chr14:64854802-64854882 2.2e-05 4_[+2]_68 chr15:100890438-10089051 2.2e-05 33_[+2]_39 chr12:56521778-56521858 2.2e-05 38_[+2]_34 chrX:106871378-106871458 2.2e-05 67_[+2]_5 chr16:67694095-67694175 2.2e-05 65_[+2]_7 chr1:155197517-155197597 2.2e-05 10_[+2]_62 chr11:74303595-74303675 2.2e-05 38_[+2]_34 chr17:60501144-60501224 2.2e-05 26_[+2]_46 chr14:23707175-23707255 2.2e-05 4_[+2]_68 chr6:84686762-84686842 2.2e-05 23_[+2]_49 chr17:29058430-29058510 2.2e-05 45_[+2]_27 chr19:47292086-47292166 2.2e-05 8_[+2]_64 chr16:85722529-85722609 2.2e-05 54_[+2]_18 chr8:144627972-144628052 2.2e-05 39_[+2]_33 chr1:155246972-155247052 2.2e-05 29_[+2]_43 chr13:48877815-48877895 2.2e-05 46_[+2]_26 chr11:17297820-17297900 4.3e-05 7_[+2]_65 chr17:59940867-59940947 4.3e-05 12_[+2]_60 chr20:1448485-1448565 4.3e-05 7_[+2]_65 chr6:97731009-97731089 4.3e-05 50_[+2]_22 chrX:102942101-102942181 7.5e-05 45_[+2]_27 chr4:39979692-39979772 7.5e-05 41_[+2]_31 chr3:72897534-72897614 7.5e-05 6_[+2]_66 chr17:46125880-46125960 7.5e-05 55_[+2]_17 chrX:153707400-153707480 7.5e-05 7_[+2]_65 chr16:75466924-75467004 7.5e-05 16_[+2]_56 chr2:27309445-27309525 7.5e-05 64_[+2]_8 chr11:9595078-9595158 7.5e-05 6_[+2]_66 chr11:75863346-75863426 7.5e-05 2_[+2]_70 chr12:123011749-12301182 0.00011 37_[+2]_35 chr1:156542311-156542391 0.00011 34_[+2]_38 chr17:57232226-57232306 0.00011 45_[+2]_27 chr6:57182414-57182494 0.00011 21_[+2]_51 chr12:122124952-12212503 0.00011 24_[+2]_48 chr4:113558002-113558082 0.00011 36_[+2]_36 chr1:226595237-226595317 0.00013 59_[+2]_13 chr11:113535990-11353607 0.00016 49_[+2]_23 chr4:170678980-170679060 0.00016 27_[+2]_45 chr5:126114078-126114158 0.00016 6_[+2]_66 chr16:2892662-2892742 0.00016 37_[+2]_35 chr12:21654530-21654610 0.00016 10_[+2]_62 chr3:6560611-6560691 0.00016 29_[+2]_43 chr12:56618072-56618152 0.00019 55_[+2]_17 chr15:40397188-40397268 0.00019 49_[+2]_23 chrX:85302328-85302408 0.00019 5_[+2]_67 chr20:35402139-35402219 0.00019 57_[+2]_15 chr13:60738057-60738137 0.00019 9_[+2]_63 chr2:136288118-136288198 0.00019 3_[+2]_69 chr3:194030809-194030889 0.00019 22_[+2]_50 chr2:61766005-61766085 0.00024 15_[+2]_57 chr5:6378631-6378711 0.00024 26_[+2]_46 chr9:98079966-98080046 0.00024 49_[+2]_23 chr6:37137521-37137601 0.00024 24_[+2]_48 chr12:56842975-56843055 0.00026 42_[+2]_30 chr17:37558903-37558983 0.00026 72_[+2] chr9:140022171-140022251 0.00028 38_[+2]_34 chr13:73356051-73356131 0.00028 15_[+2]_57 chr1:24117557-24117637 0.00033 71_[+2]_1 chr5:180288535-180288615 0.00033 50_[+2]_22 chr8:86019327-86019407 0.00033 60_[+2]_12 chr2:136634064-136634144 0.00033 27_[+2]_45 chr3:133380763-133380843 0.00033 21_[+2]_51 chr16:72106902-72106982 0.00036 64_[+2]_8 chr19:44172336-44172416 0.00036 16_[+2]_56 chr11:73881885-73881965 0.00041 9_[+2]_63 chr6:52149645-52149725 0.00044 37_[+2]_35 chr6:27113885-27113965 0.00044 50_[+2]_22 chr22:41601171-41601251 0.00047 18_[+2]_54 chr18:2302968-2303048 0.00047 39_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCCGC width=8 seqs=85 chr7:106210093-106210173 ( 9) TTTCCCGC 1 chr12:98910302-98910382 ( 9) TTTCCCGC 1 chr4:99785833-99785913 ( 37) TTTCCCGC 1 chr19:13928960-13929040 ( 9) TTTCCCGC 1 chr19:56015116-56015196 ( 61) TTTCCCGC 1 chr6:31632899-31632979 ( 9) TTTCCCGC 1 chr15:64673667-64673747 ( 11) TTTCCCGC 1 chr15:91473426-91473506 ( 42) TTTCCCGC 1 chr1:32170876-32170956 ( 30) TTTCCCGC 1 chr14:74551612-74551692 ( 22) TTTCCCGC 1 chr17:40333413-40333493 ( 39) TTTCCCGC 1 chr15:89164337-89164417 ( 35) TTTCCCGC 1 chr17:40729681-40729761 ( 28) TTTCCCGC 1 chr9:99180618-99180698 ( 48) TTTCCCGC 1 chr2:132250581-132250661 ( 19) TTTCCCGC 1 chr10:103911833-10391191 ( 43) TTTCCCGC 1 chr14:64854802-64854882 ( 5) TTTCCCGC 1 chr15:100890438-10089051 ( 34) TTTCCCGC 1 chr12:56521778-56521858 ( 39) TTTCCCGC 1 chrX:106871378-106871458 ( 68) TTTCCCGC 1 chr16:67694095-67694175 ( 66) TTTCCCGC 1 chr1:155197517-155197597 ( 11) TTTCCCGC 1 chr11:74303595-74303675 ( 39) TTTCCCGC 1 chr17:60501144-60501224 ( 27) TTTCCCGC 1 chr14:23707175-23707255 ( 5) TTTCCCGC 1 chr6:84686762-84686842 ( 24) TTTCCCGC 1 chr17:29058430-29058510 ( 46) TTTCCCGC 1 chr19:47292086-47292166 ( 9) TTTCCCGC 1 chr16:85722529-85722609 ( 55) TTTCCCGC 1 chr8:144627972-144628052 ( 40) TTTCCCGC 1 chr1:155246972-155247052 ( 30) TTTCCCGC 1 chr13:48877815-48877895 ( 47) TTTCCCGC 1 chr11:17297820-17297900 ( 8) ATTCCCGC 1 chr17:59940867-59940947 ( 13) ATTCCCGC 1 chr20:1448485-1448565 ( 8) ATTCCCGC 1 chr6:97731009-97731089 ( 51) ATTCCCGC 1 chrX:102942101-102942181 ( 46) GTTCCCGC 1 chr4:39979692-39979772 ( 42) GTTCCCGC 1 chr3:72897534-72897614 ( 7) GTTCCCGC 1 chr17:46125880-46125960 ( 56) GTTCCCGC 1 chrX:153707400-153707480 ( 8) GTTCCCGC 1 chr16:75466924-75467004 ( 17) GTTCCCGC 1 chr2:27309445-27309525 ( 65) GTTCCCGC 1 chr11:9595078-9595158 ( 7) GTTCCCGC 1 chr11:75863346-75863426 ( 3) GTTCCCGC 1 chr12:123011749-12301182 ( 38) TCTCCCGC 1 chr1:156542311-156542391 ( 35) TCTCCCGC 1 chr17:57232226-57232306 ( 46) TCTCCCGC 1 chr6:57182414-57182494 ( 22) TCTCCCGC 1 chr12:122124952-12212503 ( 25) TCTCCCGC 1 chr4:113558002-113558082 ( 37) TCTCCCGC 1 chr1:226595237-226595317 ( 60) TTTCCCGG 1 chr11:113535990-11353607 ( 50) CTTCCCGC 1 chr4:170678980-170679060 ( 28) CTTCCCGC 1 chr5:126114078-126114158 ( 7) CTTCCCGC 1 chr16:2892662-2892742 ( 38) CTTCCCGC 1 chr12:21654530-21654610 ( 11) CTTCCCGC 1 chr3:6560611-6560691 ( 30) CTTCCCGC 1 chr12:56618072-56618152 ( 56) ACTCCCGC 1 chr15:40397188-40397268 ( 50) ACTCCCGC 1 chrX:85302328-85302408 ( 6) ACTCCCGC 1 chr20:35402139-35402219 ( 58) ACTCCCGC 1 chr13:60738057-60738137 ( 10) ACTCCCGC 1 chr2:136288118-136288198 ( 4) ACTCCCGC 1 chr3:194030809-194030889 ( 23) ACTCCCGC 1 chr2:61766005-61766085 ( 16) GCTCCCGC 1 chr5:6378631-6378711 ( 27) GCTCCCGC 1 chr9:98079966-98080046 ( 50) GCTCCCGC 1 chr6:37137521-37137601 ( 25) GCTCCCGC 1 chr12:56842975-56843055 ( 43) TTTCCCGA 1 chr17:37558903-37558983 ( 73) TTTCCCGA 1 chr9:140022171-140022251 ( 39) ATTCCCGG 1 chr13:73356051-73356131 ( 16) ATTCCCGG 1 chr1:24117557-24117637 ( 72) GTTCCCGG 1 chr5:180288535-180288615 ( 51) GTTCCCGG 1 chr8:86019327-86019407 ( 61) GTTCCCGG 1 chr2:136634064-136634144 ( 28) TTTCGCGC 1 chr3:133380763-133380843 ( 22) TTTCGCGC 1 chr16:72106902-72106982 ( 65) TCTCCCGG 1 chr19:44172336-44172416 ( 17) TCTCCCGG 1 chr11:73881885-73881965 ( 10) CCTCCCGC 1 chr6:52149645-52149725 ( 38) TTTTCCGC 1 chr6:27113885-27113965 ( 51) TTTCCTGC 1 chr22:41601171-41601251 ( 19) TTCCCCGC 1 chr18:2302968-2303048 ( 40) TTCCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.73946 E= 1.0e-052 -34 -190 -66 152 -1305 -38 -1305 192 -1305 -370 -1305 228 -1305 169 -1305 -410 -1305 167 -366 -1305 -1305 169 -1305 -410 -1305 -1305 175 -1305 -304 152 -166 -1305 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 1.0e-052 0.152941 0.082353 0.188235 0.576471 0.000000 0.235294 0.000000 0.764706 0.000000 0.023529 0.000000 0.976471 0.000000 0.988235 0.000000 0.011765 0.000000 0.976471 0.023529 0.000000 0.000000 0.988235 0.000000 0.011765 0.000000 0.000000 1.000000 0.000000 0.023529 0.882353 0.094118 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCGC MEME-2 regular expression -------------------------------------------------------------------------------- T[TC]TCCCGC -------------------------------------------------------------------------------- Time 8.38 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTTCCKG MEME-3 width = 8 sites = 51 llr = 403 E-value = 1.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6::::::: pos.-specific C 1a::aa:2 probability G 2:::::67 matrix T 1:aa::41 bits 2.4 ** 2.1 ** 1.9 ** 1.7 ***** Relative 1.4 ***** Entropy 1.2 ***** (11.4 bits) 0.9 ****** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACTTCCGG consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:24117557-24117637 49 2.02e-05 CGGCCAGGCT ACTTCCGG CAGCGCGATG chr17:37844293-37844373 27 2.02e-05 TGAAGCTTCC ACTTCCGG AGTAACCGGA chr17:618067-618147 44 2.02e-05 AGGCCAGGGC ACTTCCGG GACCGGGGAA chr8:22526602-22526682 21 2.02e-05 CTCTAGGGTC ACTTCCGG ATTCAACCAG chr7:2281819-2281899 32 2.02e-05 GCCTGGCCTC ACTTCCGG TCAGAGGCCA chr12:56223359-56223439 61 2.02e-05 GCCTACTTCC ACTTCCGG GGTCACCAGG chr4:56719792-56719872 10 2.02e-05 ACGCGGTCA ACTTCCGG CGCGGAGTTT chrX:153775788-153775868 20 2.02e-05 TTGTGTTTTT ACTTCCGG ATCCCACAGC chr6:41040240-41040320 56 2.02e-05 AGGCCGCCGA ACTTCCGG CAGTAAATTC chr16:31085661-31085741 68 3.40e-05 ACCTAAGGAC ACTTCCTG TTTCC chr1:12142027-12142107 37 3.40e-05 ctcttgcctc acttcctg cttcccttct chr19:55663523-55663603 54 3.40e-05 tccctcatgc acttcctg tctttcccct chrX:2548010-2548090 61 3.40e-05 TAATTGTAGC ACTTCCTG GTTCATAGGG chrX:2548946-2549026 60 3.40e-05 ACATTGCCAC ACTTCCTG GTCCGTGTGG chr17:42264266-42264346 56 3.40e-05 CGGAGGCGGG ACTTCCTG TCCCTGGTAT chrX:2548734-2548814 45 3.40e-05 TAATTGTAGC ACTTCCTG GTTCATAGGG chr3:130465645-130465725 29 3.40e-05 GTCTGACCTC ACTTCCTG TCGCCGAGCG chr22:38453315-38453395 69 5.48e-05 GAAAGCCGGG ACTTCCGC GTCT chr17:18218277-18218357 49 5.48e-05 TTCTCCAGCT ACTTCCGC CAGGCGCGCG chr11:95523021-95523101 7 5.48e-05 CTCCCA ACTTCCGC GACGCAGGAA chr11:45939416-45939496 59 5.48e-05 TGGTTGCTTA ACTTCCGC GGGCCAGAAG chr3:129118443-129118523 66 5.48e-05 GGAGGAATCT ACTTCCGC CAGAAGT chr19:9811098-9811178 59 5.48e-05 GGCTGATGTC ACTTCCGC TACGAGCTTC chr5:6378631-6378711 61 8.26e-05 GACAGATACG ACTTCCGT TTCCTCTGGG chr3:72897534-72897614 68 1.23e-04 GAGGGACGGA GCTTCCGG CTCGA chr3:50264985-50265065 56 1.23e-04 CCCCGAGGCC GCTTCCGG CTTCGGCTCT chrX:85302328-85302408 33 1.23e-04 GGACTACCTC ACTTCCTT TCAGTTCTCC chr9:104296059-104296139 28 1.23e-04 GGTTGAAGCC ACTTCCTT TTTTCTTTCC chr5:93954304-93954384 32 1.23e-04 TGGTACTATC GCTTCCGG GGCTGCCTAG chr16:72699037-72699117 1 1.23e-04 . GCTTCCGG CCGCCAGGCG chr17:1227596-1227676 70 1.23e-04 CCTCCGCCCT GCTTCCGG GGT chr12:123011749-12301182 3 1.66e-04 TC TCTTCCGG CCGCCGTAAA chr6:57182414-57182494 2 1.66e-04 C TCTTCCGG TTTCATATGA chr16:2892662-2892742 48 1.66e-04 CTTCCCGCGC TCTTCCGG AGGTTGAGGG chr9:135282195-135282275 56 2.12e-04 TAGTGCGTCG CCTTCCGG CCCCCTCGGC chr12:21654530-21654610 40 2.12e-04 GAGCATCCAC CCTTCCGG GTCGGTCCGT chr20:1448485-1448565 25 2.12e-04 cggaaactct tcttcctg ccgaaaccgc chr22:41601171-41601251 73 2.34e-04 GGCTTTTCCT CCTTCCTG chr3:6560611-6560691 47 2.34e-04 ccaaaattgt ccttcctg ccagtgtaac chr11:75863346-75863426 15 2.34e-04 TCCCGCCATT CCTTCCTG CCTCTCACGT chr10:104503396-10450347 48 2.66e-04 TTATGAAGCT GCTTCCGC CACTCTCTGC chr8:33370640-33370720 36 2.66e-04 CGCAAGGCTA GCTTCCGC CAGTACTGCC chr18:61089732-61089812 6 3.71e-04 CGGGC ACTTCCGA TTTCGTCATC chr11:19262613-19262693 52 3.71e-04 CGGGGCCGGA CCTTCCGC CTTCGATTTA chr16:88870151-88870231 41 3.71e-04 CGCGCCCGCC TCTTCCTC CCTTCCTTCT chr15:49103382-49103462 7 4.23e-04 TCTCCG CCTTCCTC AAGCTTGGTT chr15:100890438-10089051 19 4.23e-04 AATCCGCAGC GCTTCCGT GCCCCACTTT chrX:48659853-48659933 12 4.38e-04 TAATTCCCTC GCTTCCTT GCTTGCTCTC chr6:24721510-24721590 31 5.04e-04 ATGGAGTCGC ACTTCCCG AGTCTCGTCA chr6:27113885-27113965 33 5.64e-04 GCCAGGAAGC ACTTTCTG TTAACACAAG chr14:23707175-23707255 45 5.64e-04 GAACTGGATG ATTTCCTG AGATCTGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:24117557-24117637 2e-05 48_[+3]_24 chr17:37844293-37844373 2e-05 26_[+3]_46 chr17:618067-618147 2e-05 43_[+3]_29 chr8:22526602-22526682 2e-05 20_[+3]_52 chr7:2281819-2281899 2e-05 31_[+3]_41 chr12:56223359-56223439 2e-05 60_[+3]_12 chr4:56719792-56719872 2e-05 9_[+3]_63 chrX:153775788-153775868 2e-05 19_[+3]_53 chr6:41040240-41040320 2e-05 55_[+3]_17 chr16:31085661-31085741 3.4e-05 67_[+3]_5 chr1:12142027-12142107 3.4e-05 36_[+3]_36 chr19:55663523-55663603 3.4e-05 53_[+3]_19 chrX:2548010-2548090 3.4e-05 60_[+3]_12 chrX:2548946-2549026 3.4e-05 59_[+3]_13 chr17:42264266-42264346 3.4e-05 55_[+3]_17 chrX:2548734-2548814 3.4e-05 44_[+3]_28 chr3:130465645-130465725 3.4e-05 28_[+3]_44 chr22:38453315-38453395 5.5e-05 68_[+3]_4 chr17:18218277-18218357 5.5e-05 48_[+3]_24 chr11:95523021-95523101 5.5e-05 6_[+3]_66 chr11:45939416-45939496 5.5e-05 58_[+3]_14 chr3:129118443-129118523 5.5e-05 65_[+3]_7 chr19:9811098-9811178 5.5e-05 58_[+3]_14 chr5:6378631-6378711 8.3e-05 60_[+3]_12 chr3:72897534-72897614 0.00012 67_[+3]_5 chr3:50264985-50265065 0.00012 55_[+3]_17 chrX:85302328-85302408 0.00012 32_[+3]_40 chr9:104296059-104296139 0.00012 27_[+3]_45 chr5:93954304-93954384 0.00012 31_[+3]_41 chr16:72699037-72699117 0.00012 [+3]_72 chr17:1227596-1227676 0.00012 69_[+3]_3 chr12:123011749-12301182 0.00017 2_[+3]_70 chr6:57182414-57182494 0.00017 1_[+3]_71 chr16:2892662-2892742 0.00017 47_[+3]_25 chr9:135282195-135282275 0.00021 55_[+3]_17 chr12:21654530-21654610 0.00021 39_[+3]_33 chr20:1448485-1448565 0.00021 24_[+3]_48 chr22:41601171-41601251 0.00023 72_[+3] chr3:6560611-6560691 0.00023 46_[+3]_26 chr11:75863346-75863426 0.00023 14_[+3]_58 chr10:104503396-10450347 0.00027 47_[+3]_25 chr8:33370640-33370720 0.00027 35_[+3]_37 chr18:61089732-61089812 0.00037 5_[+3]_67 chr11:19262613-19262693 0.00037 51_[+3]_21 chr16:88870151-88870231 0.00037 40_[+3]_32 chr15:49103382-49103462 0.00042 6_[+3]_66 chr15:100890438-10089051 0.00042 18_[+3]_54 chrX:48659853-48659933 0.00044 11_[+3]_61 chr6:24721510-24721590 0.0005 30_[+3]_42 chr6:27113885-27113965 0.00056 32_[+3]_40 chr14:23707175-23707255 0.00056 44_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTTCCKG width=8 seqs=51 chr1:24117557-24117637 ( 49) ACTTCCGG 1 chr17:37844293-37844373 ( 27) ACTTCCGG 1 chr17:618067-618147 ( 44) ACTTCCGG 1 chr8:22526602-22526682 ( 21) ACTTCCGG 1 chr7:2281819-2281899 ( 32) ACTTCCGG 1 chr12:56223359-56223439 ( 61) ACTTCCGG 1 chr4:56719792-56719872 ( 10) ACTTCCGG 1 chrX:153775788-153775868 ( 20) ACTTCCGG 1 chr6:41040240-41040320 ( 56) ACTTCCGG 1 chr16:31085661-31085741 ( 68) ACTTCCTG 1 chr1:12142027-12142107 ( 37) ACTTCCTG 1 chr19:55663523-55663603 ( 54) ACTTCCTG 1 chrX:2548010-2548090 ( 61) ACTTCCTG 1 chrX:2548946-2549026 ( 60) ACTTCCTG 1 chr17:42264266-42264346 ( 56) ACTTCCTG 1 chrX:2548734-2548814 ( 45) ACTTCCTG 1 chr3:130465645-130465725 ( 29) ACTTCCTG 1 chr22:38453315-38453395 ( 69) ACTTCCGC 1 chr17:18218277-18218357 ( 49) ACTTCCGC 1 chr11:95523021-95523101 ( 7) ACTTCCGC 1 chr11:45939416-45939496 ( 59) ACTTCCGC 1 chr3:129118443-129118523 ( 66) ACTTCCGC 1 chr19:9811098-9811178 ( 59) ACTTCCGC 1 chr5:6378631-6378711 ( 61) ACTTCCGT 1 chr3:72897534-72897614 ( 68) GCTTCCGG 1 chr3:50264985-50265065 ( 56) GCTTCCGG 1 chrX:85302328-85302408 ( 33) ACTTCCTT 1 chr9:104296059-104296139 ( 28) ACTTCCTT 1 chr5:93954304-93954384 ( 32) GCTTCCGG 1 chr16:72699037-72699117 ( 1) GCTTCCGG 1 chr17:1227596-1227676 ( 70) GCTTCCGG 1 chr12:123011749-12301182 ( 3) TCTTCCGG 1 chr6:57182414-57182494 ( 2) TCTTCCGG 1 chr16:2892662-2892742 ( 48) TCTTCCGG 1 chr9:135282195-135282275 ( 56) CCTTCCGG 1 chr12:21654530-21654610 ( 40) CCTTCCGG 1 chr20:1448485-1448565 ( 25) TCTTCCTG 1 chr22:41601171-41601251 ( 73) CCTTCCTG 1 chr3:6560611-6560691 ( 47) CCTTCCTG 1 chr11:75863346-75863426 ( 15) CCTTCCTG 1 chr10:104503396-10450347 ( 48) GCTTCCGC 1 chr8:33370640-33370720 ( 36) GCTTCCGC 1 chr18:61089732-61089812 ( 6) ACTTCCGA 1 chr11:19262613-19262693 ( 52) CCTTCCGC 1 chr16:88870151-88870231 ( 41) TCTTCCTC 1 chr15:49103382-49103462 ( 7) CCTTCCTC 1 chr15:100890438-10089051 ( 19) GCTTCCGT 1 chrX:48659853-48659933 ( 12) GCTTCCTT 1 chr6:24721510-24721590 ( 31) ACTTCCCG 1 chr6:27113885-27113965 ( 33) ACTTTCTG 1 chr14:23707175-23707255 ( 45) ATTTCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99089 E= 1.4e-008 160 -116 -76 -104 -1232 167 -1232 -336 -1232 -1232 -1232 231 -1232 -1232 -1232 231 -1232 167 -1232 -336 -1232 170 -1232 -1232 -1232 -397 103 89 -330 -51 116 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.4e-008 0.588235 0.137255 0.176471 0.098039 0.000000 0.980392 0.000000 0.019608 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980392 0.000000 0.019608 0.000000 1.000000 0.000000 0.000000 0.000000 0.019608 0.607843 0.372549 0.019608 0.215686 0.666667 0.098039 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCKG MEME-3 regular expression -------------------------------------------------------------------------------- ACTTCC[GT][GC] -------------------------------------------------------------------------------- Time 11.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCAATCA MEME-4 width = 8 sites = 15 llr = 152 E-value = 2.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::aa:2a pos.-specific C :aa:::8: probability G 7::::::: matrix T 2::::a:: bits 2.4 *** * 2.1 *** * 1.9 *** * 1.7 ***** * Relative 1.4 ***** * Entropy 1.2 ******* (14.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAATCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:212209046-212209126 12 1.25e-05 TCGCTCGGAA GCCAATCA GAGAGCGTGA chr19:16296091-16296171 68 1.25e-05 TTGTAGCTCA GCCAATCA AAGAG chr14:64854802-64854882 52 1.25e-05 CTTTCTTTCC GCCAATCA TTTCCGCCAG chr12:21654530-21654610 61 1.25e-05 GGTCCGTTCA GCCAATCA CAGATAACTC chr19:48867543-48867623 25 1.25e-05 CTTGGGCGCA GCCAATCA GCTGTGGAGG chr22:35795964-35796044 35 1.25e-05 GCACTTTGCA GCCAATCA TCTTCGGCAG chr22:42342751-42342831 43 1.25e-05 GCGGGAACTC GCCAATCA GAAGCTGGGA chr19:4909424-4909504 2 1.25e-05 G GCCAATCA GGAGGCAGGC chr6:52149645-52149725 10 2.10e-05 TAGCGACTG TCCAATCA AAAGCTTCTT chr12:109535832-10953591 40 2.10e-05 CGGTGCGCTG TCCAATCA GAGGGGAGAG chr17:73452606-73452686 5 2.89e-05 CGTA GCCAATAA GAAGCCAGAA chr16:77225003-77225083 4 2.89e-05 GGA GCCAATAA AGCTCCGCAA chr17:59940867-59940947 66 3.70e-05 AGCGAGCTCG ACCAATCA CCCGCCA chr3:48229914-48229994 46 3.70e-05 AACGGAATCC ACCAATCA GTAAGCAACT chr4:99785833-99785913 9 4.23e-05 tgactcat tccaataa cctgctctgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:212209046-212209126 1.3e-05 11_[+4]_61 chr19:16296091-16296171 1.3e-05 67_[+4]_5 chr14:64854802-64854882 1.3e-05 51_[+4]_21 chr12:21654530-21654610 1.3e-05 60_[+4]_12 chr19:48867543-48867623 1.3e-05 24_[+4]_48 chr22:35795964-35796044 1.3e-05 34_[+4]_38 chr22:42342751-42342831 1.3e-05 42_[+4]_30 chr19:4909424-4909504 1.3e-05 1_[+4]_71 chr6:52149645-52149725 2.1e-05 9_[+4]_63 chr12:109535832-10953591 2.1e-05 39_[+4]_33 chr17:73452606-73452686 2.9e-05 4_[+4]_68 chr16:77225003-77225083 2.9e-05 3_[+4]_69 chr17:59940867-59940947 3.7e-05 65_[+4]_7 chr3:48229914-48229994 3.7e-05 45_[+4]_27 chr4:99785833-99785913 4.2e-05 8_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAATCA width=8 seqs=15 chr1:212209046-212209126 ( 12) GCCAATCA 1 chr19:16296091-16296171 ( 68) GCCAATCA 1 chr14:64854802-64854882 ( 52) GCCAATCA 1 chr12:21654530-21654610 ( 61) GCCAATCA 1 chr19:48867543-48867623 ( 25) GCCAATCA 1 chr22:35795964-35796044 ( 35) GCCAATCA 1 chr22:42342751-42342831 ( 43) GCCAATCA 1 chr19:4909424-4909504 ( 2) GCCAATCA 1 chr6:52149645-52149725 ( 10) TCCAATCA 1 chr12:109535832-10953591 ( 40) TCCAATCA 1 chr17:73452606-73452686 ( 5) GCCAATAA 1 chr16:77225003-77225083 ( 4) GCCAATAA 1 chr17:59940867-59940947 ( 66) ACCAATCA 1 chr3:48229914-48229994 ( 46) ACCAATCA 1 chr4:99785833-99785913 ( 9) TCCAATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 2.3e-001 -54 -1055 116 -1 -1055 170 -1055 -1055 -1055 170 -1055 -1055 237 -1055 -1055 -1055 237 -1055 -1055 -1055 -1055 -1055 -1055 231 5 138 -1055 -1055 237 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.3e-001 0.133333 0.000000 0.666667 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAATCA MEME-4 regular expression -------------------------------------------------------------------------------- [GT]CCAAT[CA]A -------------------------------------------------------------------------------- Time 14.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-5 width = 8 sites = 11 llr = 115 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1a:::1a pos.-specific C :::9::9: probability G :9:1a::: matrix T a::::a:: bits 2.4 * * * * 2.1 * * * * 1.9 * * * * 1.7 * * ** * Relative 1.4 *** **** Entropy 1.2 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:212209046-212209126 27 1.27e-05 TCAGAGAGCG TGACGTCA GTTTGGCGCG chr19:50862174-50862254 58 1.27e-05 AACCGTCATA TGACGTCA CTATGGCGTC chr19:36103553-36103633 54 1.27e-05 CGGCAACCGA TGACGTCA CTGTTGGCGC chr2:74781520-74781600 59 1.27e-05 CTTGGGCATA TGACGTCA CGCGCAGCCA chr10:103911833-10391191 71 1.27e-05 GCGTGATCCC TGACGTCA GA chr13:34392175-34392255 33 1.27e-05 CGACCGGTAG TGACGTCA CGAGATTTGG chr4:113558002-113558082 54 1.27e-05 CGAAACAACG TGACGTCA TTAACGCGGG chr17:37558903-37558983 19 1.27e-05 AGCTTCGGCC TGACGTCA CTTTGGCGGG chr8:22526602-22526682 50 2.90e-05 CTCCAGGAAG TGACGTAA GCCCGCCTCT chr7:100136417-100136497 39 2.90e-05 TGCCGGGAAT TAACGTCA TCAGTCGGGA chr2:174219383-174219463 51 4.13e-05 GGCTATCCTT TGAGGTCA GAATATATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:212209046-212209126 1.3e-05 26_[+5]_46 chr19:50862174-50862254 1.3e-05 57_[+5]_15 chr19:36103553-36103633 1.3e-05 53_[+5]_19 chr2:74781520-74781600 1.3e-05 58_[+5]_14 chr10:103911833-10391191 1.3e-05 70_[+5]_2 chr13:34392175-34392255 1.3e-05 32_[+5]_40 chr4:113558002-113558082 1.3e-05 53_[+5]_19 chr17:37558903-37558983 1.3e-05 18_[+5]_54 chr8:22526602-22526682 2.9e-05 49_[+5]_23 chr7:100136417-100136497 2.9e-05 38_[+5]_34 chr2:174219383-174219463 4.1e-05 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=11 chr1:212209046-212209126 ( 27) TGACGTCA 1 chr19:50862174-50862254 ( 58) TGACGTCA 1 chr19:36103553-36103633 ( 54) TGACGTCA 1 chr2:74781520-74781600 ( 59) TGACGTCA 1 chr10:103911833-10391191 ( 71) TGACGTCA 1 chr13:34392175-34392255 ( 33) TGACGTCA 1 chr4:113558002-113558082 ( 54) TGACGTCA 1 chr17:37558903-37558983 ( 19) TGACGTCA 1 chr8:22526602-22526682 ( 50) TGACGTAA 1 chr7:100136417-100136497 ( 39) TAACGTCA 1 chr2:174219383-174219463 ( 51) TGAGGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 1.3e+002 -1010 -1010 -1010 231 -109 -1010 161 -1010 237 -1010 -1010 -1010 -1010 156 -171 -1010 -1010 -1010 175 -1010 -1010 -1010 -1010 231 -109 156 -1010 -1010 237 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.3e+002 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-5 regular expression -------------------------------------------------------------------------------- TGACGTCA -------------------------------------------------------------------------------- Time 18.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:36235784-36235864 1.85e-02 64_[+1(9.14e-05)]_8 chr12:4378589-4378669 1.41e-01 80 chr9:140485160-140485240 3.64e-02 8_[+1(4.43e-05)]_64 chr2:203103537-203103617 3.53e-01 80 chr13:48877815-48877895 3.66e-03 46_[+2(2.18e-05)]_26 chr3:130465645-130465725 3.01e-04 3_[+1(9.14e-05)]_17_[+3(3.40e-05)]_\ 44 chr2:203103333-203103413 1.38e-01 32_[+1(1.74e-05)]_40 chr1:155246972-155247052 2.83e-02 29_[+2(2.18e-05)]_43 chr1:144886703-144886783 2.23e-01 80 chr11:65679371-65679451 2.08e-01 80 chr17:37558903-37558983 1.22e-04 18_[+5(1.27e-05)]_54 chr6:37137521-37137601 2.74e-01 80 chr11:75863346-75863426 1.48e-02 2_[+2(7.49e-05)]_70 chr10:69523881-69523961 3.21e-01 80 chrX:2548734-2548814 7.75e-02 15_[+3(3.40e-05)]_21_[+3(3.40e-05)]_\ 20_[+3(3.40e-05)] chr19:4909424-4909504 9.71e-03 1_[+4(1.25e-05)]_71 chr17:30263742-30263822 3.85e-01 80 chr8:144627972-144628052 9.26e-03 39_[+2(2.18e-05)]_33 chr19:44172336-44172416 1.66e-01 80 chr3:194030809-194030889 1.07e-01 80 chr16:85722529-85722609 8.04e-03 54_[+2(2.18e-05)]_18 chr15:44119228-44119308 9.52e-01 80 chr19:9811098-9811178 2.81e-05 26_[+1(1.74e-05)]_24_[+3(5.48e-05)]_\ 14 chr19:47292086-47292166 3.21e-02 8_[+2(2.18e-05)]_64 chr3:6560611-6560691 4.05e-03 80 chr6:90539467-90539547 1.76e-01 80 chr17:29058430-29058510 1.17e-03 45_[+2(2.18e-05)]_27 chr2:44769962-44770042 6.91e-02 80 chr17:21002558-21002638 5.59e-01 80 chr7:138124155-138124235 3.54e-02 25_[+1(1.74e-05)]_47 chr22:42342751-42342831 1.26e-03 11_[+1(1.74e-05)]_23_[+4(1.25e-05)]_\ 30 chr6:84686762-84686842 1.09e-02 23_[+2(2.18e-05)]_49 chr7:100728598-100728678 2.06e-01 80 chr11:9595078-9595158 6.00e-02 6_[+2(7.49e-05)]_66 chr2:219432981-219433061 3.35e-01 80 chr22:35795964-35796044 1.69e-03 34_[+4(1.25e-05)]_38 chr6:97731009-97731089 3.48e-02 50_[+2(4.27e-05)]_22 chr19:48867543-48867623 2.11e-03 24_[+4(1.25e-05)]_19_[+1(1.74e-05)]_\ 21 chr20:32274223-32274303 3.36e-01 80 chr12:110151396-11015147 3.01e-01 80 chr14:23707175-23707255 6.25e-03 4_[+2(2.18e-05)]_68 chr17:60501144-60501224 3.28e-03 26_[+2(2.18e-05)]_46 chr5:176005458-176005538 1.31e-01 80 chr10:103893324-10389340 3.16e-02 80 chr12:109535832-10953591 1.62e-02 39_[+4(2.10e-05)]_33 chr4:113558002-113558082 8.24e-05 53_[+5(1.27e-05)]_19 chr11:74303595-74303675 8.18e-03 38_[+2(2.18e-05)]_34 chr16:11439215-11439295 5.38e-02 71_[+1(1.74e-05)]_1 chr3:133380763-133380843 1.02e-03 80 chr2:58468525-58468605 4.36e-02 27_[+1(4.43e-05)]_45 chr2:48010289-48010369 7.89e-01 80 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chr8:143791781-143791861 6.12e-01 80 chr17:73452606-73452686 7.79e-02 4_[+4(2.89e-05)]_68 chr1:212209046-212209126 1.91e-04 11_[+4(1.25e-05)]_7_[+5(1.27e-05)]_\ 46 chr16:31085661-31085741 1.16e-03 67_[+3(3.40e-05)]_5 chr10:104503396-10450347 8.33e-02 80 chr5:82373292-82373372 1.67e-01 80 chr17:76374671-76374751 5.77e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************