******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:240007499-240007579 1.0000 80 chr10:134094486-13409456 1.0000 80 chr6:170387619-170387699 1.0000 80 chr10:134093778-13409385 1.0000 80 chr19:36235779-36235859 1.0000 80 chr17:64266394-64266474 1.0000 80 chr12:6450571-6450651 1.0000 80 chr19:44172322-44172402 1.0000 80 chr1:83241262-83241342 1.0000 80 chrX:106871407-106871487 1.0000 80 chr11:11804769-11804849 1.0000 80 chr18:11677058-11677138 1.0000 80 chr16:29313978-29314058 1.0000 80 chr11:68120251-68120331 1.0000 80 chr19:13928959-13929039 1.0000 80 chr14:51706573-51706653 1.0000 80 chr17:41920134-41920214 1.0000 80 chr15:40389410-40389490 1.0000 80 chr11:1357753-1357833 1.0000 80 chrX:153523759-153523839 1.0000 80 chr10:96305579-96305659 1.0000 80 chr1:1623831-1623911 1.0000 80 chr2:219432947-219433027 1.0000 80 chr2:240008061-240008141 1.0000 80 chr22:38966085-38966165 1.0000 80 chrX:200059-200139 1.0000 80 chr2:203103346-203103426 1.0000 80 chr19:4909410-4909490 1.0000 80 chr11:102524873-10252495 1.0000 80 chr15:44119190-44119270 1.0000 80 chr17:75632057-75632137 1.0000 80 chr16:12200227-12200307 1.0000 80 chr10:45868870-45868950 1.0000 80 chr16:88553016-88553096 1.0000 80 chr8:144627961-144628041 1.0000 80 chr17:30263726-30263806 1.0000 80 chr19:47292093-47292173 1.0000 80 chr18:8877064-8877144 1.0000 80 chr11:65679337-65679417 1.0000 80 chr1:155246956-155247036 1.0000 80 chr12:120703826-12070390 1.0000 80 chr16:1187832-1187912 1.0000 80 chr6:84686737-84686817 1.0000 80 chr6:37137518-37137598 1.0000 80 chr17:29058382-29058462 1.0000 80 chr22:42342741-42342821 1.0000 80 chr14:23707174-23707254 1.0000 80 chr15:48624333-48624413 1.0000 80 chr15:100890442-10089052 1.0000 80 chr6:604706-604786 1.0000 80 chr11:75863344-75863424 1.0000 80 chr8:61894023-61894103 1.0000 80 chr10:69523834-69523914 1.0000 80 chr6:90539461-90539541 1.0000 80 chr2:157293113-157293193 1.0000 80 chr20:52195357-52195437 1.0000 80 chrX:100353037-100353117 1.0000 80 chr16:75156301-75156381 1.0000 80 chr6:74019473-74019553 1.0000 80 chr1:209848542-209848622 1.0000 80 chr19:6740795-6740875 1.0000 80 chr17:60730771-60730851 1.0000 80 chr11:47236584-47236664 1.0000 80 chr1:144886738-144886818 1.0000 80 chrX:38662903-38662983 1.0000 80 chr16:88540359-88540439 1.0000 80 chr16:85722527-85722607 1.0000 80 chr6:97731001-97731081 1.0000 80 chr1:207921558-207921638 1.0000 80 chr1:43638429-43638509 1.0000 80 chr12:103023173-10302325 1.0000 80 chr8:9009146-9009226 1.0000 80 chr16:88870140-88870220 1.0000 80 chr5:79950249-79950329 1.0000 80 chr19:48673512-48673592 1.0000 80 chr7:138124147-138124227 1.0000 80 chr20:3184679-3184759 1.0000 80 chr7:21985673-21985753 1.0000 80 chr17:46125873-46125953 1.0000 80 chr14:21538145-21538225 1.0000 80 chr17:21002566-21002646 1.0000 80 chr12:132413139-13241321 1.0000 80 chr20:32274198-32274278 1.0000 80 chr6:26188730-26188810 1.0000 80 chr11:111472699-11147277 1.0000 80 chr16:12537870-12537950 1.0000 80 chr6:33290437-33290517 1.0000 80 chr20:31230268-31230348 1.0000 80 chr6:153303406-153303486 1.0000 80 chr7:1753610-1753690 1.0000 80 chr5:82265208-82265288 1.0000 80 chr16:72106885-72106965 1.0000 80 chr15:89787594-89787674 1.0000 80 chr16:67694119-67694199 1.0000 80 chr2:242760474-242760554 1.0000 80 chr22:35795972-35796052 1.0000 80 chr19:1415611-1415691 1.0000 80 chr1:167194007-167194087 1.0000 80 chr22:45619561-45619641 1.0000 80 chr7:100728598-100728678 1.0000 80 chr3:194030813-194030893 1.0000 80 chr7:155130875-155130955 1.0000 80 chr8:145669685-145669765 1.0000 80 chr3:6560608-6560688 1.0000 80 chr2:61766014-61766094 1.0000 80 chr2:48010307-48010387 1.0000 80 chr9:135849262-135849342 1.0000 80 chr1:155197507-155197587 1.0000 80 chr1:1446534-1446614 1.0000 80 chr4:99785834-99785914 1.0000 80 chr1:23857717-23857797 1.0000 80 chr20:35402131-35402211 1.0000 80 chr4:185654493-185654573 1.0000 80 chr3:165636558-165636638 1.0000 80 chr15:97035380-97035460 1.0000 80 chr16:29818061-29818141 1.0000 80 chr1:1280346-1280426 1.0000 80 chr12:110151410-11015149 1.0000 80 chr11:74303600-74303680 1.0000 80 chr15:26091758-26091838 1.0000 80 chr5:149323313-149323393 1.0000 80 chr11:17297796-17297876 1.0000 80 chr1:27985989-27986069 1.0000 80 chr17:60501131-60501211 1.0000 80 chr8:95907747-95907827 1.0000 80 chr1:33283584-33283664 1.0000 80 chr16:11439214-11439294 1.0000 80 chr20:1448474-1448554 1.0000 80 chrX:44858646-44858726 1.0000 80 chr1:200994811-200994891 1.0000 80 chr19:49164347-49164427 1.0000 80 chr10:103893365-10389344 1.0000 80 chr12:109535815-10953589 1.0000 80 chr18:658380-658460 1.0000 80 chr3:127317220-127317300 1.0000 80 chr11:19262614-19262694 1.0000 80 chr14:42067028-42067108 1.0000 80 chr11:9595095-9595175 1.0000 80 chr13:48877830-48877910 1.0000 80 chr7:26240975-26241055 1.0000 80 chr19:55852860-55852940 1.0000 80 chr16:31117247-31117327 1.0000 80 chr14:68286475-68286555 1.0000 80 chr16:30389960-30390040 1.0000 80 chr8:74888415-74888495 1.0000 80 chr1:109841409-109841489 1.0000 80 chr2:220083792-220083872 1.0000 80 chr20:5100033-5100113 1.0000 80 chr3:48595666-48595746 1.0000 80 chr5:176005460-176005540 1.0000 80 chr19:47777694-47777774 1.0000 80 chr16:3030398-3030478 1.0000 80 chr5:137800866-137800946 1.0000 80 chr2:136634057-136634137 1.0000 80 chr2:47630141-47630221 1.0000 80 chrX:150732085-150732165 1.0000 80 chr11:61035091-61035171 1.0000 80 chr9:99180629-99180709 1.0000 80 chr15:40719560-40719640 1.0000 80 chrX:53449099-53449179 1.0000 80 chr12:92073293-92073373 1.0000 80 chr19:48233252-48233332 1.0000 80 chr2:136288069-136288149 1.0000 80 chr15:98503677-98503757 1.0000 80 chr19:13262756-13262836 1.0000 80 chr7:66072019-66072099 1.0000 80 chr19:50887598-50887678 1.0000 80 chr8:41686281-41686361 1.0000 80 chr11:67593982-67594062 1.0000 80 chr10:115614122-11561420 1.0000 80 chr12:56521779-56521859 1.0000 80 chr3:133380773-133380853 1.0000 80 chr4:113557992-113558072 1.0000 80 chr1:26232224-26232304 1.0000 80 chr16:89853255-89853335 1.0000 80 chr18:2302935-2303015 1.0000 80 chr12:31479246-31479326 1.0000 80 chr1:145455368-145455448 1.0000 80 chr8:103666325-103666405 1.0000 80 chr3:48229915-48229995 1.0000 80 chr5:180288580-180288660 1.0000 80 chr2:73404540-73404620 1.0000 80 chr20:60101086-60101166 1.0000 80 chr3:194843157-194843237 1.0000 80 chr1:170501442-170501522 1.0000 80 chr14:105195763-10519584 1.0000 80 chr19:48867498-48867578 1.0000 80 chr13:73356061-73356141 1.0000 80 chr6:35420131-35420211 1.0000 80 chr19:40336345-40336425 1.0000 80 chr2:158866941-158867021 1.0000 80 chr7:139045189-139045269 1.0000 80 chr11:67777003-67777083 1.0000 80 chr1:9555450-9555530 1.0000 80 chr12:21654529-21654609 1.0000 80 chr10:13203496-13203576 1.0000 80 chr1:44992185-44992265 1.0000 80 chr5:126114092-126114172 1.0000 80 chr8:128748379-128748459 1.0000 80 chr12:108908895-10890897 1.0000 80 chr8:38009784-38009864 1.0000 80 chr8:103668033-103668113 1.0000 80 chr19:16222077-16222157 1.0000 80 chr16:75466919-75466999 1.0000 80 chr10:120891521-12089160 1.0000 80 chr19:50832998-50833078 1.0000 80 chr22:42915963-42916043 1.0000 80 chrX:23925634-23925714 1.0000 80 chr12:131310990-13131107 1.0000 80 chr6:10838829-10838909 1.0000 80 chr15:40987364-40987444 1.0000 80 chrX:15693422-15693502 1.0000 80 chr19:44144204-44144284 1.0000 80 chr19:15375038-15375118 1.0000 80 chr12:122124933-12212501 1.0000 80 chr12:4378597-4378677 1.0000 80 chr15:51895931-51896011 1.0000 80 chr3:58419764-58419844 1.0000 80 chr17:37558922-37559002 1.0000 80 chr12:48950539-48950619 1.0000 80 chr11:77011189-77011269 1.0000 80 chr19:4909971-4910051 1.0000 80 chr6:37016453-37016533 1.0000 80 chr12:21810375-21810455 1.0000 80 chr2:74781536-74781616 1.0000 80 chr10:103911835-10391191 1.0000 80 chr1:229583682-229583762 1.0000 80 chr16:68002671-68002751 1.0000 80 chr8:86290429-86290509 1.0000 80 chrX:153707400-153707480 1.0000 80 chr7:7680025-7680105 1.0000 80 chr6:43235524-43235604 1.0000 80 chr14:74551617-74551697 1.0000 80 chrX:48659868-48659948 1.0000 80 chr2:242088940-242089020 1.0000 80 chr22:39101506-39101586 1.0000 80 chr2:58468529-58468609 1.0000 80 chr15:66649026-66649106 1.0000 80 chr11:113535972-11353605 1.0000 80 chr12:31226954-31227034 1.0000 80 chrX:24711992-24712072 1.0000 80 chr1:91966561-91966641 1.0000 80 chr4:103789920-103790000 1.0000 80 chr22:50923896-50923976 1.0000 80 chr3:186524169-186524249 1.0000 80 chr17:75321237-75321317 1.0000 80 chr10:27444298-27444378 1.0000 80 chr12:132342242-13234232 1.0000 80 chr19:5978283-5978363 1.0000 80 chr19:12998380-12998460 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_E2F7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.199 C 0.305 G 0.298 T 0.197 Background letter frequencies (from file dataset with add-one prior applied): A 0.199 C 0.305 G 0.298 T 0.197 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGGGAAA MEME-1 width = 8 sites = 65 llr = 572 E-value = 9.0e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::a96 pos.-specific C :a:::::1 probability G a:aaa:12 matrix T :::::::: bits 2.3 2.1 * 1.9 ** 1.6 *** *** Relative 1.4 ******* Entropy 1.2 ******* (12.7 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:7680025-7680105 49 1.90e-05 ACTGCGGCTG GCGGGAAA CCCACGGACG chr19:15375038-15375118 48 1.90e-05 CTTCGAGTTG GCGGGAAA AATCCACGCA chr19:44144204-44144284 37 1.90e-05 CTCGGTGAGC GCGGGAAA TGGAGGGTGT chr6:10838829-10838909 13 1.90e-05 GCGTGGCCTC GCGGGAAA TCCCCGCCAA chrX:23925634-23925714 58 1.90e-05 CGGCCCAGTG GCGGGAAA AGCCTCGGGG chr8:128748379-128748459 34 1.90e-05 CAGAGGCTTG GCGGGAAA AAGAACGGAG chr1:9555450-9555530 50 1.90e-05 GGCAGGAAGC GCGGGAAA GCGGCCGCGA chr19:40336345-40336425 26 1.90e-05 AGTGCAGAAG GCGGGAAA GTGAGCCGAA chr13:73356061-73356141 32 1.90e-05 AACACTTCTC GCGGGAAA ATGCCGAGAT chr5:180288580-180288660 27 1.90e-05 TGGGGGCCTG GCGGGAAA TGGGGGAATC chr12:31479246-31479326 39 1.90e-05 GCTCCGCGGC GCGGGAAA CGCGGCGGCC chr19:50887598-50887678 27 1.90e-05 GTAGGCTGTG GCGGGAAA CGCTGTTTGA chr2:220083792-220083872 51 1.90e-05 CGTGCCCAGG GCGGGAAA TCTGACGACC chr16:30389960-30390040 49 1.90e-05 TGGCGCTCTG GCGGGAAA GCTTACTGCG chrX:44858646-44858726 43 1.90e-05 gagtggtttg gcgggaaa aatggttatg chr16:11439214-11439294 73 1.90e-05 CTCAAAGTTG GCGGGAAA chr1:1446534-1446614 12 1.90e-05 gagtggtttg gcgggaaa aatggttatg chr5:82265208-82265288 1 1.90e-05 . gcgggaaa aatggttatg chr14:21538145-21538225 6 1.90e-05 CCGTG GCGGGAAA AGAGGGGCAT chr7:138124147-138124227 34 1.90e-05 gagtggtttg gcgggaaa aatggttatg chr16:88870140-88870220 22 1.90e-05 cagggcgccc gcgggAAA TTTGGCGGGA chr17:60730771-60730851 4 1.90e-05 ACC GCGGGAAA GGTGACAGTC chr16:75156301-75156381 50 1.90e-05 attaggactg gcgggaaa gttgtttact chr20:52195357-52195437 8 1.90e-05 CATACTG GCGGGAAA AATTATCTTC chr2:157293113-157293193 25 1.90e-05 GTAGGTGGTG GCGGGAAA CGGGAAAGAT chr10:69523834-69523914 27 1.90e-05 CCCAGTCTTG GCGGGAAA CGCCGCGGAA chr15:48624333-48624413 19 1.90e-05 GGCGGGGCTG GCGGGAAA TTTCGGTTTT chr22:42342741-42342821 22 1.90e-05 ACCCCCAGAC GCGGGAAA ACCAATTCCA chr18:8877064-8877144 46 1.90e-05 gactgctttg gcgggaaa aaaatggtta chr2:203103346-203103426 20 1.90e-05 GAAAGACAAG GCGGGAAA TGGGTGGGGG chr10:27444298-27444378 70 4.73e-05 GGATCCCACC GCGGGAAG CAA chr2:58468529-58468609 24 4.73e-05 CCCAGCCTTG GCGGGAAG ATCCTGGAGG chr10:103911835-10391191 25 4.73e-05 GAAAGACTGC GCGGGAAG TCCCGAGTTT chrX:53449099-53449179 34 4.73e-05 GACTGAGCTG GCGGGAAG CTGGTTCCAG chr18:658380-658460 38 4.73e-05 GGCAAAGGCG GCGGGAAG AGGAGAGCAC chr1:33283584-33283664 52 4.73e-05 GCTGTTGCTG GCGGGAAG ATAGCCGCGG chr11:111472699-11147277 71 4.73e-05 AGAGGTTTTG GCGGGAAG GA chr20:3184679-3184759 22 4.73e-05 CCTCTCCTTG GCGGGAAG GGAGAGAGCT chr6:74019473-74019553 45 4.73e-05 GAGCCCGCCG GCGGGAAG AGACCAGACA chr15:44119190-44119270 8 4.73e-05 AATCTTG GCGGGAAG GCGCCGGCCG chr12:108908895-10890897 55 7.64e-05 CGACGCGGAC GCGGGAAC CCGGAAATGC chr6:35420131-35420211 2 7.64e-05 C GCGGGAAC GGCTGCGGCT chr10:115614122-11561420 4 7.64e-05 TTG GCGGGAAC AAGTTCCCGC chr5:137800866-137800946 15 7.64e-05 GAGGGGCAAC GCGGGAAC TCCGGAGCTG chr5:176005460-176005540 19 7.64e-05 GCCACAGACG GCGGGAAC CTGTCCTCCT chr6:90539461-90539541 27 7.64e-05 CCTTCCAAAG GCGGGAAC TAGTTGTGGG chrX:106871407-106871487 49 7.64e-05 TTTCCCGCTA GCGGGAAC GATCTGGCCT chr17:37558922-37559002 13 1.05e-04 CGTCACTTTG GCGGGAGA AACAAGCGTG chr7:100728598-100728678 53 1.05e-04 gggggccttg gcgggaga ggacggggcc chr6:153303406-153303486 22 1.05e-04 CGCGGAGGAG GCGGGAGA TAACCGCGAG chr1:144886738-144886818 5 1.05e-04 GATG GCGGGAGA TGATGGCTTA chr15:40987364-40987444 3 1.24e-04 TG GCGGGAAT TCTGAAAGCC chr2:61766014-61766094 37 1.24e-04 GCCTGAGCCC GCGGGAAT CAGGATCCGC chr11:65679337-65679417 66 1.24e-04 AGAGATTTTG GCGGGAAT GCTTCGC chrX:15693422-15693502 67 1.43e-04 AAGGGAGGTG GCGCGAAA AGGGAA chr3:127317220-127317300 40 1.43e-04 ACCACTTTTC GCGCGAAA CCTGGTTGTT chr10:45868870-45868950 15 1.43e-04 GCCCAGGAGC GCGCGAAA CCTTCTCCAC chr19:5978283-5978363 67 1.71e-04 GACTGAGAGG GCGGGGAA AGGGCC chr1:170501442-170501522 52 1.71e-04 TGCAGCTTTG GCGGGGAA AGGGGGCGTG chr14:68286475-68286555 41 1.71e-04 GGCGTTTTCC GCGGGGAA ACTGTGTAAA chr8:103666325-103666405 55 1.84e-04 TCCGGGAGGC GCAGGAAA CGTGAACTGG chr19:36235779-36235859 70 2.03e-04 GACCAAGTTC CCGGGAAA ACG chr5:79950249-79950329 67 2.46e-04 CATGACAGCA GCGGGAGG ACCTCC chr16:68002671-68002751 8 2.89e-04 CCCCTGG GCGGGAGC ACTCCTAGTG chrX:38662903-38662983 3 2.89e-04 CT GCGGGAGC ACCGCGCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:7680025-7680105 1.9e-05 48_[+1]_24 chr19:15375038-15375118 1.9e-05 47_[+1]_25 chr19:44144204-44144284 1.9e-05 36_[+1]_36 chr6:10838829-10838909 1.9e-05 12_[+1]_60 chrX:23925634-23925714 1.9e-05 57_[+1]_15 chr8:128748379-128748459 1.9e-05 33_[+1]_39 chr1:9555450-9555530 1.9e-05 49_[+1]_23 chr19:40336345-40336425 1.9e-05 25_[+1]_47 chr13:73356061-73356141 1.9e-05 31_[+1]_41 chr5:180288580-180288660 1.9e-05 26_[+1]_46 chr12:31479246-31479326 1.9e-05 38_[+1]_34 chr19:50887598-50887678 1.9e-05 26_[+1]_46 chr2:220083792-220083872 1.9e-05 50_[+1]_22 chr16:30389960-30390040 1.9e-05 48_[+1]_24 chrX:44858646-44858726 1.9e-05 42_[+1]_30 chr16:11439214-11439294 1.9e-05 72_[+1] chr1:1446534-1446614 1.9e-05 11_[+1]_61 chr5:82265208-82265288 1.9e-05 [+1]_72 chr14:21538145-21538225 1.9e-05 5_[+1]_67 chr7:138124147-138124227 1.9e-05 33_[+1]_39 chr16:88870140-88870220 1.9e-05 21_[+1]_51 chr17:60730771-60730851 1.9e-05 3_[+1]_69 chr16:75156301-75156381 1.9e-05 49_[+1]_23 chr20:52195357-52195437 1.9e-05 7_[+1]_65 chr2:157293113-157293193 1.9e-05 24_[+1]_48 chr10:69523834-69523914 1.9e-05 26_[+1]_46 chr15:48624333-48624413 1.9e-05 18_[+1]_54 chr22:42342741-42342821 1.9e-05 21_[+1]_51 chr18:8877064-8877144 1.9e-05 45_[+1]_27 chr2:203103346-203103426 1.9e-05 19_[+1]_53 chr10:27444298-27444378 4.7e-05 69_[+1]_3 chr2:58468529-58468609 4.7e-05 23_[+1]_49 chr10:103911835-10391191 4.7e-05 24_[+1]_48 chrX:53449099-53449179 4.7e-05 33_[+1]_39 chr18:658380-658460 4.7e-05 37_[+1]_35 chr1:33283584-33283664 4.7e-05 51_[+1]_21 chr11:111472699-11147277 4.7e-05 70_[+1]_2 chr20:3184679-3184759 4.7e-05 21_[+1]_51 chr6:74019473-74019553 4.7e-05 44_[+1]_28 chr15:44119190-44119270 4.7e-05 7_[+1]_65 chr12:108908895-10890897 7.6e-05 54_[+1]_18 chr6:35420131-35420211 7.6e-05 1_[+1]_71 chr10:115614122-11561420 7.6e-05 3_[+1]_69 chr5:137800866-137800946 7.6e-05 14_[+1]_58 chr5:176005460-176005540 7.6e-05 18_[+1]_54 chr6:90539461-90539541 7.6e-05 26_[+1]_46 chrX:106871407-106871487 7.6e-05 48_[+1]_24 chr17:37558922-37559002 0.0001 12_[+1]_60 chr7:100728598-100728678 0.0001 52_[+1]_20 chr6:153303406-153303486 0.0001 21_[+1]_51 chr1:144886738-144886818 0.0001 4_[+1]_68 chr15:40987364-40987444 0.00012 2_[+1]_70 chr2:61766014-61766094 0.00012 36_[+1]_36 chr11:65679337-65679417 0.00012 65_[+1]_7 chrX:15693422-15693502 0.00014 66_[+1]_6 chr3:127317220-127317300 0.00014 39_[+1]_33 chr10:45868870-45868950 0.00014 14_[+1]_58 chr19:5978283-5978363 0.00017 66_[+1]_6 chr1:170501442-170501522 0.00017 51_[+1]_21 chr14:68286475-68286555 0.00017 40_[+1]_32 chr8:103666325-103666405 0.00018 54_[+1]_18 chr19:36235779-36235859 0.0002 69_[+1]_3 chr5:79950249-79950329 0.00025 66_[+1]_6 chr16:68002671-68002751 0.00029 7_[+1]_65 chrX:38662903-38662983 0.00029 2_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGAAA width=8 seqs=65 chr7:7680025-7680105 ( 49) GCGGGAAA 1 chr19:15375038-15375118 ( 48) GCGGGAAA 1 chr19:44144204-44144284 ( 37) GCGGGAAA 1 chr6:10838829-10838909 ( 13) GCGGGAAA 1 chrX:23925634-23925714 ( 58) GCGGGAAA 1 chr8:128748379-128748459 ( 34) GCGGGAAA 1 chr1:9555450-9555530 ( 50) GCGGGAAA 1 chr19:40336345-40336425 ( 26) GCGGGAAA 1 chr13:73356061-73356141 ( 32) GCGGGAAA 1 chr5:180288580-180288660 ( 27) GCGGGAAA 1 chr12:31479246-31479326 ( 39) GCGGGAAA 1 chr19:50887598-50887678 ( 27) GCGGGAAA 1 chr2:220083792-220083872 ( 51) GCGGGAAA 1 chr16:30389960-30390040 ( 49) GCGGGAAA 1 chrX:44858646-44858726 ( 43) GCGGGAAA 1 chr16:11439214-11439294 ( 73) GCGGGAAA 1 chr1:1446534-1446614 ( 12) GCGGGAAA 1 chr5:82265208-82265288 ( 1) GCGGGAAA 1 chr14:21538145-21538225 ( 6) GCGGGAAA 1 chr7:138124147-138124227 ( 34) GCGGGAAA 1 chr16:88870140-88870220 ( 22) GCGGGAAA 1 chr17:60730771-60730851 ( 4) GCGGGAAA 1 chr16:75156301-75156381 ( 50) GCGGGAAA 1 chr20:52195357-52195437 ( 8) GCGGGAAA 1 chr2:157293113-157293193 ( 25) GCGGGAAA 1 chr10:69523834-69523914 ( 27) GCGGGAAA 1 chr15:48624333-48624413 ( 19) GCGGGAAA 1 chr22:42342741-42342821 ( 22) GCGGGAAA 1 chr18:8877064-8877144 ( 46) GCGGGAAA 1 chr2:203103346-203103426 ( 20) GCGGGAAA 1 chr10:27444298-27444378 ( 70) GCGGGAAG 1 chr2:58468529-58468609 ( 24) GCGGGAAG 1 chr10:103911835-10391191 ( 25) GCGGGAAG 1 chrX:53449099-53449179 ( 34) GCGGGAAG 1 chr18:658380-658460 ( 38) GCGGGAAG 1 chr1:33283584-33283664 ( 52) GCGGGAAG 1 chr11:111472699-11147277 ( 71) GCGGGAAG 1 chr20:3184679-3184759 ( 22) GCGGGAAG 1 chr6:74019473-74019553 ( 45) GCGGGAAG 1 chr15:44119190-44119270 ( 8) GCGGGAAG 1 chr12:108908895-10890897 ( 55) GCGGGAAC 1 chr6:35420131-35420211 ( 2) GCGGGAAC 1 chr10:115614122-11561420 ( 4) GCGGGAAC 1 chr5:137800866-137800946 ( 15) GCGGGAAC 1 chr5:176005460-176005540 ( 19) GCGGGAAC 1 chr6:90539461-90539541 ( 27) GCGGGAAC 1 chrX:106871407-106871487 ( 49) GCGGGAAC 1 chr17:37558922-37559002 ( 13) GCGGGAGA 1 chr7:100728598-100728678 ( 53) GCGGGAGA 1 chr6:153303406-153303486 ( 22) GCGGGAGA 1 chr1:144886738-144886818 ( 5) GCGGGAGA 1 chr15:40987364-40987444 ( 3) GCGGGAAT 1 chr2:61766014-61766094 ( 37) GCGGGAAT 1 chr11:65679337-65679417 ( 66) GCGGGAAT 1 chrX:15693422-15693502 ( 67) GCGCGAAA 1 chr3:127317220-127317300 ( 40) GCGCGAAA 1 chr10:45868870-45868950 ( 15) GCGCGAAA 1 chr19:5978283-5978363 ( 67) GCGGGGAA 1 chr1:170501442-170501522 ( 52) GCGGGGAA 1 chr14:68286475-68286555 ( 41) GCGGGGAA 1 chr8:103666325-103666405 ( 55) GCAGGAAA 1 chr19:36235779-36235859 ( 70) CCGGGAAA 1 chr5:79950249-79950329 ( 67) GCGGGAGG 1 chr16:68002671-68002751 ( 8) GCGGGAGC 1 chrX:38662903-38662983 ( 3) GCGGGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88203 E= 9.0e-049 -1267 -431 172 -1267 -1267 171 -1267 -1267 -369 -1267 172 -1267 -1267 -272 168 -1267 -1267 -1267 174 -1267 226 -1267 -269 -1267 216 -1267 -147 -1267 170 -114 -82 -209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 9.0e-049 0.000000 0.015385 0.984615 0.000000 0.000000 1.000000 0.000000 0.000000 0.015385 0.000000 0.984615 0.000000 0.000000 0.046154 0.953846 0.000000 0.000000 0.000000 1.000000 0.000000 0.953846 0.000000 0.046154 0.000000 0.892308 0.000000 0.107692 0.000000 0.646154 0.138462 0.169231 0.046154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGAAA MEME-1 regular expression -------------------------------------------------------------------------------- GCGGGAAA -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCCCGCC MEME-2 width = 8 sites = 71 llr = 612 E-value = 2.3e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 21a9a:a7 probability G :::1:a:2 matrix T 89:::::: bits 2.3 2.1 * 1.9 * 1.6 *** *** Relative 1.4 ******* Entropy 1.2 ******* (12.4 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCCCGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:5978283-5978363 49 3.05e-05 CCGCCTCCTT TTCCCGCC GACTGAGAGG chr1:91966561-91966641 41 3.05e-05 GCAGTTCCTT TTCCCGCC CCCCTTCGGA chr11:113535972-11353605 69 3.05e-05 gtaacggctc ttcccgcc aaag chr14:74551617-74551697 18 3.05e-05 GAACCTCGTT TTCCCGCC GACGGTTGGC chrX:153707400-153707480 9 3.05e-05 GTGGTCAG TTCCCGCC AAGCGGCCCT chr10:103911835-10391191 42 3.05e-05 GTCCCGAGTT TTCCCGCC ACGCCGAGGG chr12:21654529-21654609 13 3.05e-05 GAGTAAAATC TTCCCGCC AGCCAGCTGA chr12:56521779-56521859 39 3.05e-05 TTTCTTCCTT TTCCCGCC ATCTCAGACC chr11:67593982-67594062 61 3.05e-05 TTGCAGCGGT TTCCCGCC AGCTCCTTGC chr3:48595666-48595746 7 3.05e-05 TGCAGT TTCCCGCC TCCTCGGGAT chr14:42067028-42067108 13 3.05e-05 ccgccattta ttcccgcc atcccgacag chr17:60501131-60501211 41 3.05e-05 GCCACCCTTT TTCCCGCC CAGACTCCGC chr11:17297796-17297876 33 3.05e-05 GCCGTTAAGA TTCCCGCC AAGGCGGAGG chr11:74303600-74303680 35 3.05e-05 GCAAAGACGT TTCCCGCC GGCGGGAGCT chr16:29818061-29818141 52 3.05e-05 CATGAACTCC TTCCCGCC ACCTCAGGGT chr15:97035380-97035460 52 3.05e-05 gcagccccgg ttcccgcc agcgcctctc chr3:165636558-165636638 42 3.05e-05 gcagcccagg ttcccgcc agcgcctgcc chr4:185654493-185654573 60 3.05e-05 GCCGAGACCC TTCCCGCC AGATCCAGGC chr4:99785834-99785914 37 3.05e-05 ataacctttt ttcccgcc aaccactcac chr1:155197507-155197587 22 3.05e-05 TCTCAGCGCT TTCCCGCC AGCACACCCT chr3:6560608-6560688 34 3.05e-05 acaatggccc ttcccgcc aaaattgtcc chr15:89787594-89787674 69 3.05e-05 GCCGCGGCGT TTCCCGCC GGCG chr16:72106885-72106965 1 3.05e-05 . ttcccgcc agtcgttatc chr6:33290437-33290517 34 3.05e-05 CTAGATGCGC TTCCCGCC AAATCCCCCT chr17:46125873-46125953 64 3.05e-05 CCGAGCGGGG TTCCCGCC AGAGCCCGG chr12:103023173-10302325 12 3.05e-05 tctgccacag ttcccgcc acttcctatt chr6:97731001-97731081 60 3.05e-05 ACAGGCGAAA TTCCCGCC ACCGCGCGCC chr16:85722527-85722607 58 3.05e-05 GGCCGCCGTT TTCCCGCC ACGGCGAGAG chr19:6740795-6740875 53 3.05e-05 GGGGAGGGGG TTCCCGCC AGTTTCCTGC chr11:75863344-75863424 6 3.05e-05 CCCCG TTCCCGCC ATTCCTTCCT chr14:23707174-23707254 7 3.05e-05 TTTACT TTCCCGCC ATGTCCAGCT chr6:84686737-84686817 50 3.05e-05 ataaccattt ttcccgcc aaaccactca chr1:155246956-155247036 47 3.05e-05 GCGTCCGATT TTCCCGCC ACTGCAGGGG chr19:47292093-47292173 3 3.05e-05 GT TTCCCGCC AAAGGAACTG chr8:144627961-144628041 52 3.05e-05 atacccattt ttcccgcc aaaccactca chr19:13928959-13929039 11 3.05e-05 CCAGCTCTTT TTCCCGCC ACCTAGTGCG chr16:75466919-75466999 23 6.03e-05 CATGTGCCGG TTCCCGCG CTGCAAGAGG chr2:73404540-73404620 39 6.03e-05 GCACGGCCCT TTCCCGCG CGATCTCCCG chr7:66072019-66072099 40 6.03e-05 CTCCTCCTTC TTCCCGCG AAGATCTGGA chr19:48233252-48233332 26 6.03e-05 CCCAGGTTCG TTCCCGCG GGTCCCTTGG chr9:99180629-99180709 38 6.03e-05 GCCCCGGCTT TTCCCGCG TTACATTTCG chr13:48877830-48877910 33 6.03e-05 AAGTGACGTT TTCCCGCG GTTGGACGCG chr20:1448474-1448554 20 6.03e-05 acaattgcca ttcccgcg gaaactcttc chr16:67694119-67694199 43 6.03e-05 GGGCCCGGGT TTCCCGCG GGCGCCCAGG chr15:100890442-10089052 31 6.03e-05 GTGCCCCACT TTCCCGCG TCAGCCTGGC chr1:83241262-83241342 44 6.03e-05 aacctctggt ttcccgcg ctgctcatta chr11:77011189-77011269 36 1.08e-04 tccaccctca ctcccgcc aaaccactca chr16:89853255-89853335 32 1.08e-04 ACCTGAAATT CTCCCGCC AAGCACACCA chr2:136288069-136288149 54 1.08e-04 GAATCTCCAA CTCCCGCC ACAGGTTTGG chr20:35402131-35402211 67 1.08e-04 GCCTCCGAAA CTCCCGCC AACCAA chr2:61766014-61766094 8 1.08e-04 CCACCGG CTCCCGCC AACCTGCGGG chr3:194030813-194030893 20 1.08e-04 AGAATCAGTA CTCCCGCC AAAGCAGCAT chr6:74019473-74019553 21 1.08e-04 AGTACAGCTC CTCCCGCC ACCGCAGAGC chrX:100353037-100353117 33 1.08e-04 GCCACCGAGC CTCCCGCC ACCTCTAGCC chr6:37137518-37137598 29 1.08e-04 CTACACCCAG CTCCCGCC TCCCCTCACG chr3:133380773-133380853 13 1.37e-04 GGAACCGACT TTCGCGCC AACCGCGCGG chr2:136634057-136634137 36 1.37e-04 AGCTGGAGAT TTCGCGCC AAACCTGACC chr19:48673512-48673592 59 1.37e-04 CAGTCCCAAG TTCGCGCC ACGGCATTCG chr10:115614122-11561420 15 1.57e-04 CGGGAACAAG TTCCCGCT GCCAGTGCCG chrX:106871407-106871487 40 1.57e-04 CATGGTTGAT TTCCCGCT AGCGGGAACG chr1:200994811-200994891 8 1.77e-04 CTCTGGT TTCCTGCC TGCAGGAGGT chr19:12998380-12998460 51 2.70e-04 TGGCACGAGC TCCCCGCC AAGCATTATC chr12:122124933-12212501 45 2.70e-04 GACCCACAAT CTCCCGCG CAATTAACCA chr6:10838829-10838909 21 2.70e-04 TCGCGGGAAA TCCCCGCC AATTCCCGCA chr4:113557992-113558072 48 2.70e-04 TTTCGAATTT CTCCCGCG AAACAACGTG chr1:23857717-23857797 73 2.70e-04 AAATTCGGAT CTCCCGCG chr6:153303406-153303486 46 2.70e-04 CGAGCGCGAT CTCCCGCG CCCGCCAGCA chr11:47236584-47236664 16 2.70e-04 AGTTTTGTAG TCCCCGCC TTGTTTCTCC chr12:6450571-6450651 37 2.70e-04 TCCCTTCTTT TCCCCGCC AAATCTGCCC chr19:4909971-4910051 26 2.99e-04 CGAGCCCGAT TTCGCGCG CCCTGAGTTC chr1:167194007-167194087 17 3.19e-04 GTCAAGTAGT TTCCTGCG TATTTCTAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:5978283-5978363 3.1e-05 48_[+2]_24 chr1:91966561-91966641 3.1e-05 40_[+2]_32 chr11:113535972-11353605 3.1e-05 68_[+2]_4 chr14:74551617-74551697 3.1e-05 17_[+2]_55 chrX:153707400-153707480 3.1e-05 8_[+2]_64 chr10:103911835-10391191 3.1e-05 41_[+2]_31 chr12:21654529-21654609 3.1e-05 12_[+2]_60 chr12:56521779-56521859 3.1e-05 38_[+2]_34 chr11:67593982-67594062 3.1e-05 60_[+2]_12 chr3:48595666-48595746 3.1e-05 6_[+2]_66 chr14:42067028-42067108 3.1e-05 12_[+2]_60 chr17:60501131-60501211 3.1e-05 40_[+2]_32 chr11:17297796-17297876 3.1e-05 32_[+2]_40 chr11:74303600-74303680 3.1e-05 34_[+2]_38 chr16:29818061-29818141 3.1e-05 51_[+2]_21 chr15:97035380-97035460 3.1e-05 51_[+2]_21 chr3:165636558-165636638 3.1e-05 41_[+2]_31 chr4:185654493-185654573 3.1e-05 59_[+2]_13 chr4:99785834-99785914 3.1e-05 36_[+2]_36 chr1:155197507-155197587 3.1e-05 21_[+2]_51 chr3:6560608-6560688 3.1e-05 33_[+2]_39 chr15:89787594-89787674 3.1e-05 68_[+2]_4 chr16:72106885-72106965 3.1e-05 [+2]_72 chr6:33290437-33290517 3.1e-05 33_[+2]_39 chr17:46125873-46125953 3.1e-05 63_[+2]_9 chr12:103023173-10302325 3.1e-05 11_[+2]_61 chr6:97731001-97731081 3.1e-05 59_[+2]_13 chr16:85722527-85722607 3.1e-05 57_[+2]_15 chr19:6740795-6740875 3.1e-05 52_[+2]_20 chr11:75863344-75863424 3.1e-05 5_[+2]_67 chr14:23707174-23707254 3.1e-05 6_[+2]_66 chr6:84686737-84686817 3.1e-05 49_[+2]_23 chr1:155246956-155247036 3.1e-05 46_[+2]_26 chr19:47292093-47292173 3.1e-05 2_[+2]_70 chr8:144627961-144628041 3.1e-05 51_[+2]_21 chr19:13928959-13929039 3.1e-05 10_[+2]_62 chr16:75466919-75466999 6e-05 22_[+2]_50 chr2:73404540-73404620 6e-05 38_[+2]_34 chr7:66072019-66072099 6e-05 39_[+2]_33 chr19:48233252-48233332 6e-05 25_[+2]_47 chr9:99180629-99180709 6e-05 37_[+2]_35 chr13:48877830-48877910 6e-05 32_[+2]_40 chr20:1448474-1448554 6e-05 19_[+2]_53 chr16:67694119-67694199 6e-05 42_[+2]_30 chr15:100890442-10089052 6e-05 30_[+2]_42 chr1:83241262-83241342 6e-05 43_[+2]_29 chr11:77011189-77011269 0.00011 35_[+2]_37 chr16:89853255-89853335 0.00011 31_[+2]_41 chr2:136288069-136288149 0.00011 53_[+2]_19 chr20:35402131-35402211 0.00011 66_[+2]_6 chr2:61766014-61766094 0.00011 7_[+2]_65 chr3:194030813-194030893 0.00011 19_[+2]_53 chr6:74019473-74019553 0.00011 20_[+2]_52 chrX:100353037-100353117 0.00011 32_[+2]_40 chr6:37137518-37137598 0.00011 28_[+2]_44 chr3:133380773-133380853 0.00014 12_[+2]_60 chr2:136634057-136634137 0.00014 35_[+2]_37 chr19:48673512-48673592 0.00014 58_[+2]_14 chr10:115614122-11561420 0.00016 14_[+2]_58 chrX:106871407-106871487 0.00016 39_[+2]_33 chr1:200994811-200994891 0.00018 7_[+2]_65 chr19:12998380-12998460 0.00027 50_[+2]_22 chr12:122124933-12212501 0.00027 44_[+2]_28 chr6:10838829-10838909 0.00027 20_[+2]_52 chr4:113557992-113558072 0.00027 47_[+2]_25 chr1:23857717-23857797 0.00027 72_[+2] chr6:153303406-153303486 0.00027 45_[+2]_27 chr11:47236584-47236664 0.00027 15_[+2]_57 chr12:6450571-6450651 0.00027 36_[+2]_36 chr19:4909971-4910051 0.0003 25_[+2]_47 chr1:167194007-167194087 0.00032 16_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCCGCC width=8 seqs=71 chr19:5978283-5978363 ( 49) TTCCCGCC 1 chr1:91966561-91966641 ( 41) TTCCCGCC 1 chr11:113535972-11353605 ( 69) TTCCCGCC 1 chr14:74551617-74551697 ( 18) TTCCCGCC 1 chrX:153707400-153707480 ( 9) TTCCCGCC 1 chr10:103911835-10391191 ( 42) TTCCCGCC 1 chr12:21654529-21654609 ( 13) TTCCCGCC 1 chr12:56521779-56521859 ( 39) TTCCCGCC 1 chr11:67593982-67594062 ( 61) TTCCCGCC 1 chr3:48595666-48595746 ( 7) TTCCCGCC 1 chr14:42067028-42067108 ( 13) TTCCCGCC 1 chr17:60501131-60501211 ( 41) TTCCCGCC 1 chr11:17297796-17297876 ( 33) TTCCCGCC 1 chr11:74303600-74303680 ( 35) TTCCCGCC 1 chr16:29818061-29818141 ( 52) TTCCCGCC 1 chr15:97035380-97035460 ( 52) TTCCCGCC 1 chr3:165636558-165636638 ( 42) TTCCCGCC 1 chr4:185654493-185654573 ( 60) TTCCCGCC 1 chr4:99785834-99785914 ( 37) TTCCCGCC 1 chr1:155197507-155197587 ( 22) TTCCCGCC 1 chr3:6560608-6560688 ( 34) TTCCCGCC 1 chr15:89787594-89787674 ( 69) TTCCCGCC 1 chr16:72106885-72106965 ( 1) TTCCCGCC 1 chr6:33290437-33290517 ( 34) TTCCCGCC 1 chr17:46125873-46125953 ( 64) TTCCCGCC 1 chr12:103023173-10302325 ( 12) TTCCCGCC 1 chr6:97731001-97731081 ( 60) TTCCCGCC 1 chr16:85722527-85722607 ( 58) TTCCCGCC 1 chr19:6740795-6740875 ( 53) TTCCCGCC 1 chr11:75863344-75863424 ( 6) TTCCCGCC 1 chr14:23707174-23707254 ( 7) TTCCCGCC 1 chr6:84686737-84686817 ( 50) TTCCCGCC 1 chr1:155246956-155247036 ( 47) TTCCCGCC 1 chr19:47292093-47292173 ( 3) TTCCCGCC 1 chr8:144627961-144628041 ( 52) TTCCCGCC 1 chr19:13928959-13929039 ( 11) TTCCCGCC 1 chr16:75466919-75466999 ( 23) TTCCCGCG 1 chr2:73404540-73404620 ( 39) TTCCCGCG 1 chr7:66072019-66072099 ( 40) TTCCCGCG 1 chr19:48233252-48233332 ( 26) TTCCCGCG 1 chr9:99180629-99180709 ( 38) TTCCCGCG 1 chr13:48877830-48877910 ( 33) TTCCCGCG 1 chr20:1448474-1448554 ( 20) TTCCCGCG 1 chr16:67694119-67694199 ( 43) TTCCCGCG 1 chr15:100890442-10089052 ( 31) TTCCCGCG 1 chr1:83241262-83241342 ( 44) TTCCCGCG 1 chr11:77011189-77011269 ( 36) CTCCCGCC 1 chr16:89853255-89853335 ( 32) CTCCCGCC 1 chr2:136288069-136288149 ( 54) CTCCCGCC 1 chr20:35402131-35402211 ( 67) CTCCCGCC 1 chr2:61766014-61766094 ( 8) CTCCCGCC 1 chr3:194030813-194030893 ( 20) CTCCCGCC 1 chr6:74019473-74019553 ( 21) CTCCCGCC 1 chrX:100353037-100353117 ( 33) CTCCCGCC 1 chr6:37137518-37137598 ( 29) CTCCCGCC 1 chr3:133380773-133380853 ( 13) TTCGCGCC 1 chr2:136634057-136634137 ( 36) TTCGCGCC 1 chr19:48673512-48673592 ( 59) TTCGCGCC 1 chr10:115614122-11561420 ( 15) TTCCCGCT 1 chrX:106871407-106871487 ( 40) TTCCCGCT 1 chr1:200994811-200994891 ( 8) TTCCTGCC 1 chr19:12998380-12998460 ( 51) TCCCCGCC 1 chr12:122124933-12212501 ( 45) CTCCCGCG 1 chr6:10838829-10838909 ( 21) TCCCCGCC 1 chr4:113557992-113558072 ( 48) CTCCCGCG 1 chr1:23857717-23857797 ( 73) CTCCCGCG 1 chr6:153303406-153303486 ( 46) CTCCCGCG 1 chr11:47236584-47236664 ( 16) TCCCCGCC 1 chr12:6450571-6450651 ( 37) TCCCCGCC 1 chr19:4909971-4910051 ( 26) TTCGCGCG 1 chr1:167194007-167194087 ( 17) TTCCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.83776 E= 2.3e-051 -1279 -74 -1279 205 -1279 -244 -1279 226 -1279 171 -1279 -1279 -1279 163 -240 -1279 -1279 167 -1279 -280 -1279 -1279 174 -1279 -1279 171 -1279 -1279 -1279 129 -40 -280 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 2.3e-051 0.000000 0.183099 0.000000 0.816901 0.000000 0.056338 0.000000 0.943662 0.000000 1.000000 0.000000 0.000000 0.000000 0.943662 0.056338 0.000000 0.000000 0.971831 0.000000 0.028169 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.746479 0.225352 0.028169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-2 regular expression -------------------------------------------------------------------------------- TTCCCGC[CG] -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKTTTTT MEME-3 width = 8 sites = 12 llr = 125 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:::2::: pos.-specific C :::::11: probability G ::6:::1: matrix T 9a4a898a bits 2.3 * * * 2.1 * * * 1.9 ** * * * 1.6 ** *** * Relative 1.4 ** ***** Entropy 1.2 ** ***** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:9595095-9595175 46 2.27e-06 CGCGCCCTCC TTTTTTTT TCAAACCCGG chr1:23857717-23857797 34 2.27e-06 tctttttttt tttttttt AGCGCCAAAC chr1:167194007-167194087 64 2.27e-06 tctttttttt tttttttt ttttccaga chr17:21002566-21002646 68 2.27e-06 cctttttctt tttttttt tcttt chr6:90539461-90539541 7 2.27e-06 CGTGTT TTTTTTTT TCCCTTCCAA chr12:92073293-92073373 21 5.70e-06 ttgtttgttt ttgttttt ttgagatgga chr22:39101506-39101586 73 1.15e-05 GTAACGTTGT TTGTATTT chr15:89787594-89787674 12 1.15e-05 GTTATAGTTT TTGTATTT GCGCTCACGG chr1:43638429-43638509 24 1.72e-05 CAGACGCTGC ATGTTTTT GGTCTTCGAT chr2:158866941-158867021 47 3.82e-05 CATCTTGTGG TTGTTTGT AAATTTTCCA chr11:47236584-47236664 24 3.82e-05 AGTCCCCGCC TTGTTTCT CCCCAGAGGC chr17:75321237-75321317 10 4.35e-05 tttatctat ttgttctt ctgttgcctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:9595095-9595175 2.3e-06 45_[+3]_27 chr1:23857717-23857797 2.3e-06 33_[+3]_39 chr1:167194007-167194087 2.3e-06 63_[+3]_9 chr17:21002566-21002646 2.3e-06 67_[+3]_5 chr6:90539461-90539541 2.3e-06 6_[+3]_66 chr12:92073293-92073373 5.7e-06 20_[+3]_52 chr22:39101506-39101586 1.1e-05 72_[+3] chr15:89787594-89787674 1.1e-05 11_[+3]_61 chr1:43638429-43638509 1.7e-05 23_[+3]_49 chr2:158866941-158867021 3.8e-05 46_[+3]_26 chr11:47236584-47236664 3.8e-05 23_[+3]_49 chr17:75321237-75321317 4.3e-05 9_[+3]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKTTTTT width=8 seqs=12 chr11:9595095-9595175 ( 46) TTTTTTTT 1 chr1:23857717-23857797 ( 34) TTTTTTTT 1 chr1:167194007-167194087 ( 64) TTTTTTTT 1 chr17:21002566-21002646 ( 68) TTTTTTTT 1 chr6:90539461-90539541 ( 7) TTTTTTTT 1 chr12:92073293-92073373 ( 21) TTGTTTTT 1 chr22:39101506-39101586 ( 73) TTGTATTT 1 chr15:89787594-89787674 ( 12) TTGTATTT 1 chr1:43638429-43638509 ( 24) ATGTTTTT 1 chr2:158866941-158867021 ( 47) TTGTTTGT 1 chr11:47236584-47236664 ( 24) TTGTTTCT 1 chr17:75321237-75321317 ( 10) TTGTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.5e+000 -126 -1023 -1023 222 -1023 -1023 -1023 234 -1023 -1023 97 108 -1023 -1023 -1023 234 -26 -1023 -1023 208 -1023 -187 -1023 222 -1023 -187 -184 208 -1023 -1023 -1023 234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e+000 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.083333 0.000000 0.916667 0.000000 0.083333 0.083333 0.833333 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-3 regular expression -------------------------------------------------------------------------------- TT[GT]TTTTT -------------------------------------------------------------------------------- Time 12.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAATCAG MEME-4 width = 8 sites = 12 llr = 125 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::8a::a: pos.-specific C aa2::a:1 probability G :::::::9 matrix T ::::a::: bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 ******* Relative 1.4 ******** Entropy 1.2 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCAATCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:139045189-139045269 25 1.31e-05 CCCGTCCCAT CCAATCAG GGCTCGGCAG chr19:48867498-48867578 71 1.31e-05 TTGGGCGCAG CCAATCAG CT chr3:48229915-48229995 46 1.31e-05 ACGGAATCCA CCAATCAG TAAGCAACTT chr1:145455368-145455448 56 1.31e-05 GTGGCTGGAA CCAATCAG CTTATCTAAG chr19:55852860-55852940 19 1.31e-05 ATCCCGGCTG CCAATCAG TCAGCCTTCT chr12:109535815-10953589 58 1.31e-05 GGTGCGCTGT CCAATCAG AGGGGAGAGG chrX:100353037-100353117 49 1.31e-05 CCACCTCTAG CCAATCAG GCTTCAGCTG chr22:42342741-42342821 54 1.31e-05 CGGGAACTCG CCAATCAG AAGCTGGGAA chr19:4909410-4909490 17 1.31e-05 ACTGCGTCGG CCAATCAG GAGGCAGGCG chr19:49164347-49164427 12 3.32e-05 TATCCTGAGG CCCATCAG AAACCAACAG chr19:44172322-44172402 72 3.32e-05 TAGGCCCGGC CCCATCAG C chr12:21654529-21654609 63 4.67e-05 GTCCGTTCAG CCAATCAC AGATAACTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:139045189-139045269 1.3e-05 24_[+4]_48 chr19:48867498-48867578 1.3e-05 70_[+4]_2 chr3:48229915-48229995 1.3e-05 45_[+4]_27 chr1:145455368-145455448 1.3e-05 55_[+4]_17 chr19:55852860-55852940 1.3e-05 18_[+4]_54 chr12:109535815-10953589 1.3e-05 57_[+4]_15 chrX:100353037-100353117 1.3e-05 48_[+4]_24 chr22:42342741-42342821 1.3e-05 53_[+4]_19 chr19:4909410-4909490 1.3e-05 16_[+4]_56 chr19:49164347-49164427 3.3e-05 11_[+4]_61 chr19:44172322-44172402 3.3e-05 71_[+4]_1 chr12:21654529-21654609 4.7e-05 62_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAATCAG width=8 seqs=12 chr7:139045189-139045269 ( 25) CCAATCAG 1 chr19:48867498-48867578 ( 71) CCAATCAG 1 chr3:48229915-48229995 ( 46) CCAATCAG 1 chr1:145455368-145455448 ( 56) CCAATCAG 1 chr19:55852860-55852940 ( 19) CCAATCAG 1 chr12:109535815-10953589 ( 58) CCAATCAG 1 chrX:100353037-100353117 ( 49) CCAATCAG 1 chr22:42342741-42342821 ( 54) CCAATCAG 1 chr19:4909410-4909490 ( 17) CCAATCAG 1 chr19:49164347-49164427 ( 12) CCCATCAG 1 chr19:44172322-44172402 ( 72) CCCATCAG 1 chr12:21654529-21654609 ( 63) CCAATCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.4e+001 -1023 171 -1023 -1023 -1023 171 -1023 -1023 206 -87 -1023 -1023 233 -1023 -1023 -1023 -1023 -1023 -1023 234 -1023 171 -1023 -1023 233 -1023 -1023 -1023 -1023 -187 162 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.4e+001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCAG MEME-4 regular expression -------------------------------------------------------------------------------- CCAATCAG -------------------------------------------------------------------------------- Time 16.02 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGTTAT MEME-5 width = 8 sites = 6 llr = 71 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::2::a: pos.-specific C :::::::: probability G ::a8:::: matrix T :a::aa:a bits 2.3 ** **** 2.1 ** **** 1.9 ** **** 1.6 *** **** Relative 1.4 *** **** Entropy 1.2 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGGTTAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:44858646-44858726 52 5.30e-06 ggcgggaaaa atggttat gacagagcag chr1:1446534-1446614 21 5.30e-06 ggcgggaaaa atggttat gggacaggta chr5:82265208-82265288 10 5.30e-06 gcgggaaaa atggttat ggaatgagtc chr7:138124147-138124227 43 5.30e-06 ggcgggaaaa atggttat gacagagcag chr18:8877064-8877144 57 5.30e-06 cgggaaaaaa atggttat gcagggtgaa chr7:7680025-7680105 23 8.83e-06 CATGTCCACC ATGATTAT GGTCCAAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:44858646-44858726 5.3e-06 51_[+5]_21 chr1:1446534-1446614 5.3e-06 20_[+5]_52 chr5:82265208-82265288 5.3e-06 9_[+5]_63 chr7:138124147-138124227 5.3e-06 42_[+5]_30 chr18:8877064-8877144 5.3e-06 56_[+5]_16 chr7:7680025-7680105 8.8e-06 22_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGTTAT width=8 seqs=6 chrX:44858646-44858726 ( 52) ATGGTTAT 1 chr1:1446534-1446614 ( 21) ATGGTTAT 1 chr5:82265208-82265288 ( 10) ATGGTTAT 1 chr7:138124147-138124227 ( 43) ATGGTTAT 1 chr18:8877064-8877144 ( 57) ATGGTTAT 1 chr7:7680025-7680105 ( 23) ATGATTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 1.5e+002 232 -923 -923 -923 -923 -923 -923 234 -923 -923 174 -923 -26 -923 148 -923 -923 -923 -923 234 -923 -923 -923 234 232 -923 -923 -923 -923 -923 -923 234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTAT MEME-5 regular expression -------------------------------------------------------------------------------- ATGGTTAT -------------------------------------------------------------------------------- Time 19.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:240007499-240007579 6.67e-01 80 chr10:134094486-13409456 9.85e-01 80 chr6:170387619-170387699 9.44e-01 80 chr10:134093778-13409385 2.65e-01 80 chr19:36235779-36235859 2.26e-01 80 chr17:64266394-64266474 6.81e-01 80 chr12:6450571-6450651 1.25e-01 80 chr19:44172322-44172402 7.07e-03 71_[+4(3.32e-05)]_1 chr1:83241262-83241342 1.12e-02 43_[+2(6.03e-05)]_29 chrX:106871407-106871487 3.65e-03 48_[+1(7.64e-05)]_24 chr11:11804769-11804849 2.68e-01 80 chr18:11677058-11677138 3.46e-01 80 chr16:29313978-29314058 7.57e-01 80 chr11:68120251-68120331 9.18e-01 80 chr19:13928959-13929039 4.06e-02 10_[+2(3.05e-05)]_62 chr14:51706573-51706653 4.45e-01 80 chr17:41920134-41920214 9.89e-01 80 chr15:40389410-40389490 8.71e-01 80 chr11:1357753-1357833 8.18e-01 80 chrX:153523759-153523839 9.97e-01 80 chr10:96305579-96305659 9.26e-01 80 chr1:1623831-1623911 5.52e-01 80 chr2:219432947-219433027 5.39e-01 80 chr2:240008061-240008141 7.59e-01 80 chr22:38966085-38966165 5.10e-01 80 chrX:200059-200139 3.34e-01 80 chr2:203103346-203103426 1.51e-01 19_[+1(1.90e-05)]_53 chr19:4909410-4909490 2.56e-02 16_[+4(1.31e-05)]_56 chr11:102524873-10252495 5.16e-01 80 chr15:44119190-44119270 2.66e-01 7_[+1(4.73e-05)]_65 chr17:75632057-75632137 9.98e-01 80 chr16:12200227-12200307 2.14e-01 80 chr10:45868870-45868950 6.57e-02 80 chr16:88553016-88553096 9.99e-01 80 chr8:144627961-144628041 1.81e-03 51_[+2(3.05e-05)]_11_[+4(6.73e-05)]_\ 2 chr17:30263726-30263806 9.81e-01 80 chr19:47292093-47292173 1.14e-01 2_[+2(3.05e-05)]_70 chr18:8877064-8877144 6.68e-04 45_[+1(1.90e-05)]_3_[+5(5.30e-06)]_\ 16 chr11:65679337-65679417 2.49e-01 80 chr1:155246956-155247036 3.15e-02 46_[+2(3.05e-05)]_26 chr12:120703826-12070390 4.97e-01 80 chr16:1187832-1187912 4.92e-01 80 chr6:84686737-84686817 3.73e-03 49_[+2(3.05e-05)]_23 chr6:37137518-37137598 1.37e-01 80 chr17:29058382-29058462 4.34e-01 80 chr22:42342741-42342821 2.05e-03 21_[+1(1.90e-05)]_13_[+1(7.64e-05)]_\ 3_[+4(1.31e-05)]_19 chr14:23707174-23707254 2.60e-02 6_[+2(3.05e-05)]_66 chr15:48624333-48624413 1.03e-02 18_[+1(1.90e-05)]_54 chr15:100890442-10089052 3.16e-02 30_[+2(6.03e-05)]_42 chr6:604706-604786 4.76e-03 80 chr11:75863344-75863424 1.59e-01 5_[+2(3.05e-05)]_67 chr8:61894023-61894103 4.39e-01 80 chr10:69523834-69523914 4.26e-02 26_[+1(1.90e-05)]_46 chr6:90539461-90539541 3.80e-04 4_[+3(2.27e-06)]_14_[+1(7.64e-05)]_\ 46 chr2:157293113-157293193 2.13e-03 24_[+1(1.90e-05)]_48 chr20:52195357-52195437 1.68e-03 7_[+1(1.90e-05)]_65 chrX:100353037-100353117 5.74e-03 48_[+4(1.31e-05)]_24 chr16:75156301-75156381 1.60e-02 49_[+1(1.90e-05)]_23 chr6:74019473-74019553 1.19e-02 44_[+1(4.73e-05)]_28 chr1:209848542-209848622 5.26e-01 80 chr19:6740795-6740875 1.22e-02 52_[+2(3.05e-05)]_20 chr17:60730771-60730851 1.17e-02 3_[+1(1.90e-05)]_69 chr11:47236584-47236664 8.97e-03 23_[+3(3.82e-05)]_49 chr1:144886738-144886818 2.12e-01 80 chrX:38662903-38662983 1.44e-01 80 chr16:88540359-88540439 1.36e-01 80 chr16:85722527-85722607 2.75e-02 57_[+2(3.05e-05)]_15 chr6:97731001-97731081 6.25e-02 59_[+2(3.05e-05)]_13 chr1:207921558-207921638 2.53e-02 80 chr1:43638429-43638509 2.00e-02 23_[+3(1.72e-05)]_49 chr12:103023173-10302325 5.33e-03 11_[+2(3.05e-05)]_61 chr8:9009146-9009226 6.35e-01 80 chr16:88870140-88870220 2.73e-02 21_[+1(1.90e-05)]_4_[+1(7.64e-05)]_\ 39 chr5:79950249-79950329 2.52e-02 80 chr19:48673512-48673592 1.59e-01 80 chr7:138124147-138124227 1.32e-04 33_[+1(1.90e-05)]_1_[+5(5.30e-06)]_\ 30 chr20:3184679-3184759 2.92e-02 21_[+1(4.73e-05)]_51 chr7:21985673-21985753 1.85e-01 80 chr17:46125873-46125953 3.81e-03 63_[+2(3.05e-05)]_9 chr14:21538145-21538225 9.24e-02 5_[+1(1.90e-05)]_67 chr17:21002566-21002646 1.94e-02 65_[+3(2.27e-06)]_7 chr12:132413139-13241321 3.75e-01 80 chr20:32274198-32274278 1.05e-01 80 chr6:26188730-26188810 6.17e-01 80 chr11:111472699-11147277 5.87e-02 70_[+1(4.73e-05)]_2 chr16:12537870-12537950 9.26e-01 80 chr6:33290437-33290517 1.22e-01 33_[+2(3.05e-05)]_39 chr20:31230268-31230348 5.67e-01 80 chr6:153303406-153303486 3.96e-02 80 chr7:1753610-1753690 8.09e-02 80 chr5:82265208-82265288 4.93e-04 [+1(1.90e-05)]_1_[+5(5.30e-06)]_63 chr16:72106885-72106965 1.01e-03 [+2(3.05e-05)]_58_[+4(6.73e-05)]_6 chr15:89787594-89787674 2.32e-04 11_[+3(1.15e-05)]_49_[+2(3.05e-05)]_\ 4 chr16:67694119-67694199 1.26e-01 42_[+2(6.03e-05)]_30 chr2:242760474-242760554 9.95e-01 80 chr22:35795972-35796052 7.20e-02 27_[+4(8.47e-05)]_45 chr19:1415611-1415691 9.39e-01 80 chr1:167194007-167194087 1.57e-03 55_[+3(2.27e-06)]_[+3(2.27e-06)]_9 chr22:45619561-45619641 8.43e-01 80 chr7:100728598-100728678 1.98e-01 80 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************