******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr20:10015461-10015541 1.0000 80 chr19:50831513-50831593 1.0000 80 chr17:43045654-43045734 1.0000 80 chr2:71503614-71503694 1.0000 80 chr6:73972914-73972994 1.0000 80 chr19:48076523-48076603 1.0000 80 chr16:1813702-1813782 1.0000 80 chr1:211500172-211500252 1.0000 80 chr7:4721734-4721814 1.0000 80 chr16:2228915-2228995 1.0000 80 chr1:23670364-23670444 1.0000 80 chr3:46853996-46854076 1.0000 80 chr2:233498339-233498419 1.0000 80 chr11:68778579-68778659 1.0000 80 chr6:33588950-33589030 1.0000 80 chr12:26111715-26111795 1.0000 80 chr4:6202230-6202310 1.0000 80 chr8:142183487-142183567 1.0000 80 chr17:29886249-29886329 1.0000 80 chr17:74236604-74236684 1.0000 80 chr6:1524374-1524454 1.0000 80 chr11:109963779-10996385 1.0000 80 chr7:3340599-3340679 1.0000 80 chr7:100806343-100806423 1.0000 80 chr7:98099907-98099987 1.0000 80 chr2:175199665-175199745 1.0000 80 chr17:30813473-30813553 1.0000 80 chr15:79237360-79237440 1.0000 80 chr7:98030162-98030242 1.0000 80 chr7:54842006-54842086 1.0000 80 chr11:67407641-67407721 1.0000 80 chr17:36884684-36884764 1.0000 80 chr19:12904894-12904974 1.0000 80 chr8:131455866-131455946 1.0000 80 chr2:239112449-239112529 1.0000 80 chr4:146654510-146654590 1.0000 80 chr22:22290678-22290758 1.0000 80 chr7:73703807-73703887 1.0000 80 chr19:10024293-10024373 1.0000 80 chr11:66326771-66326851 1.0000 80 chr19:39997724-39997804 1.0000 80 chr3:127347743-127347823 1.0000 80 chr3:56836049-56836129 1.0000 80 chr19:1568475-1568555 1.0000 80 chr3:197687570-197687650 1.0000 80 chr3:113666667-113666747 1.0000 80 chr10:181016-181096 1.0000 80 chr16:3355916-3355996 1.0000 80 chr12:107381008-10738108 1.0000 80 chr4:177241693-177241773 1.0000 80 chrX:153714367-153714447 1.0000 80 chr19:54599264-54599344 1.0000 80 chr14:93799448-93799528 1.0000 80 chr1:3370965-3371045 1.0000 80 chr22:38494056-38494136 1.0000 80 chr20:42295692-42295772 1.0000 80 chr17:53342233-53342313 1.0000 80 chr20:36035050-36035130 1.0000 80 chr1:153377309-153377389 1.0000 80 chr10:6187351-6187431 1.0000 80 chr12:122460445-12246052 1.0000 80 chr16:2510088-2510168 1.0000 80 chr11:61276943-61277023 1.0000 80 chr22:19879849-19879929 1.0000 80 chr5:172710914-172710994 1.0000 80 chr1:6268869-6268949 1.0000 80 chr3:196729998-196730078 1.0000 80 chr1:43638390-43638470 1.0000 80 chr19:3613072-3613152 1.0000 80 chr16:2058912-2058992 1.0000 80 chr22:38610673-38610753 1.0000 80 chr14:24664499-24664579 1.0000 80 chr6:33601441-33601521 1.0000 80 chr20:58508673-58508753 1.0000 80 chrX:152909579-152909659 1.0000 80 chr1:247802832-247802912 1.0000 80 chr1:244014123-244014203 1.0000 80 chr8:22722471-22722551 1.0000 80 chr9:93563934-93564014 1.0000 80 chr20:62166361-62166441 1.0000 80 chr9:94661313-94661393 1.0000 80 chr1:23504279-23504359 1.0000 80 chr19:55895116-55895196 1.0000 80 chr1:9555459-9555539 1.0000 80 chr17:38020413-38020493 1.0000 80 chr10:69991260-69991340 1.0000 80 chr5:72512043-72512123 1.0000 80 chr1:181074877-181074957 1.0000 80 chr16:67198570-67198650 1.0000 80 chr10:69523835-69523915 1.0000 80 chr17:27619699-27619779 1.0000 80 chr8:1771922-1772002 1.0000 80 chrX:118602261-118602341 1.0000 80 chr2:47403004-47403084 1.0000 80 chr19:47292084-47292164 1.0000 80 chr15:66914640-66914720 1.0000 80 chr11:2291241-2291321 1.0000 80 chr10:86016923-86017003 1.0000 80 chr12:131356268-13135634 1.0000 80 chr21:43374235-43374315 1.0000 80 chr1:236849735-236849815 1.0000 80 chr11:31837636-31837716 1.0000 80 chrX:152875476-152875556 1.0000 80 chr16:67281546-67281626 1.0000 80 chr9:14315275-14315355 1.0000 80 chr12:3068725-3068805 1.0000 80 chr6:84743368-84743448 1.0000 80 chr14:95623442-95623522 1.0000 80 chr4:37688135-37688215 1.0000 80 chr19:17392680-17392760 1.0000 80 chr3:39851084-39851164 1.0000 80 chr14:105864532-10586461 1.0000 80 chr8:54790510-54790590 1.0000 80 chr3:56717378-56717458 1.0000 80 chr16:11348798-11348878 1.0000 80 chr2:68870603-68870683 1.0000 80 chr22:20014849-20014929 1.0000 80 chrX:53123018-53123098 1.0000 80 chr11:63580753-63580833 1.0000 80 chr19:55685964-55686044 1.0000 80 chr16:57318322-57318402 1.0000 80 chr12:123635470-12363555 1.0000 80 chr15:65596229-65596309 1.0000 80 chr17:77776568-77776648 1.0000 80 chr13:30982716-30982796 1.0000 80 chr10:60027787-60027867 1.0000 80 chr2:61035712-61035792 1.0000 80 chr17:72848555-72848635 1.0000 80 chr19:44259754-44259834 1.0000 80 chr19:1249322-1249402 1.0000 80 chr17:36831341-36831421 1.0000 80 chr14:91884453-91884533 1.0000 80 chr10:123358058-12335813 1.0000 80 chr15:45459120-45459200 1.0000 80 chr22:43253415-43253495 1.0000 80 chr19:36195305-36195385 1.0000 80 chr1:205290478-205290558 1.0000 80 chr9:15552875-15552955 1.0000 80 chr11:64739497-64739577 1.0000 80 chr6:34203243-34203323 1.0000 80 chr10:43047782-43047862 1.0000 80 chr17:72919780-72919860 1.0000 80 chrX:100353034-100353114 1.0000 80 chr13:27998755-27998835 1.0000 80 chr11:12768202-12768282 1.0000 80 chr9:34380719-34380799 1.0000 80 chr12:69327041-69327121 1.0000 80 chr11:74460346-74460426 1.0000 80 chrX:152912682-152912762 1.0000 80 chr1:184005025-184005105 1.0000 80 chr9:108418494-108418574 1.0000 80 chr11:119234954-11923503 1.0000 80 chr13:39612471-39612551 1.0000 80 chr4:87813511-87813591 1.0000 80 chr11:694784-694864 1.0000 80 chr11:134201886-13420196 1.0000 80 chr3:97540807-97540887 1.0000 80 chr2:231276690-231276770 1.0000 80 chr20:49092577-49092657 1.0000 80 chr4:159689956-159690036 1.0000 80 chr17:6347521-6347601 1.0000 80 chr3:52279914-52279994 1.0000 80 chr1:1535048-1535128 1.0000 80 chr21:43655015-43655095 1.0000 80 chr16:771577-771657 1.0000 80 chr7:100292108-100292188 1.0000 80 chr1:6187870-6187950 1.0000 80 chr2:3606227-3606307 1.0000 80 chr16:67282811-67282891 1.0000 80 chr6:25153430-25153510 1.0000 80 chr17:77787394-77787474 1.0000 80 chr12:122711061-12271114 1.0000 80 chr8:61199463-61199543 1.0000 80 chr2:74776197-74776277 1.0000 80 chr6:52226927-52227007 1.0000 80 chr11:75917466-75917546 1.0000 80 chr2:30669992-30670072 1.0000 80 chr20:56100123-56100203 1.0000 80 chr8:30770542-30770622 1.0000 80 chr17:40897136-40897216 1.0000 80 chr1:2344424-2344504 1.0000 80 chr1:156594372-156594452 1.0000 80 chr16:2524031-2524111 1.0000 80 chr6:39134375-39134455 1.0000 80 chr17:47755655-47755735 1.0000 80 chr21:33104559-33104639 1.0000 80 chr16:1979860-1979940 1.0000 80 chr19:49242347-49242427 1.0000 80 chr4:58030348-58030428 1.0000 80 chr19:10676587-10676667 1.0000 80 chr19:19651204-19651284 1.0000 80 chr6:150464165-150464245 1.0000 80 chr7:2559365-2559445 1.0000 80 chr7:101457480-101457560 1.0000 80 chr1:226309783-226309863 1.0000 80 chr16:47177904-47177984 1.0000 80 chr17:27071036-27071116 1.0000 80 chr17:56327193-56327273 1.0000 80 chrX:37545055-37545135 1.0000 80 chr15:72612087-72612167 1.0000 80 chr1:41249311-41249391 1.0000 80 chr19:18700367-18700447 1.0000 80 chr6:28677843-28677923 1.0000 80 chr9:37079473-37079553 1.0000 80 chr18:5296962-5297042 1.0000 80 chr19:13928951-13929031 1.0000 80 chr19:56151537-56151617 1.0000 80 chr3:13461814-13461894 1.0000 80 chr4:44728499-44728579 1.0000 80 chr9:140009176-140009256 1.0000 80 chr18:66382356-66382436 1.0000 80 chr5:139085038-139085118 1.0000 80 chr6:169284803-169284883 1.0000 80 chr9:138798882-138798962 1.0000 80 chr10:103986097-10398617 1.0000 80 chr3:73045859-73045939 1.0000 80 chr19:16222114-16222194 1.0000 80 chr3:38692889-38692969 1.0000 80 chrX:71238446-71238526 1.0000 80 chr7:72848625-72848705 1.0000 80 chr15:90319785-90319865 1.0000 80 chr11:14665120-14665200 1.0000 80 chr6:73332945-73333025 1.0000 80 chr9:100747114-100747194 1.0000 80 chr17:42015594-42015674 1.0000 80 chr6:74019452-74019532 1.0000 80 chr17:35767283-35767363 1.0000 80 chr17:59520935-59521015 1.0000 80 chr17:42441140-42441220 1.0000 80 chr3:5229041-5229121 1.0000 80 chr19:10614038-10614118 1.0000 80 chr16:1922065-1922145 1.0000 80 chr15:77197789-77197869 1.0000 80 chrX:39966740-39966820 1.0000 80 chr8:18871174-18871254 1.0000 80 chr20:34189500-34189580 1.0000 80 chr5:14143529-14143609 1.0000 80 chr15:23723194-23723274 1.0000 80 chr13:101241092-10124117 1.0000 80 chr15:42174183-42174263 1.0000 80 chr12:49209311-49209391 1.0000 80 chr11:118901659-11890173 1.0000 80 chr4:2464255-2464335 1.0000 80 chr10:85997190-85997270 1.0000 80 chr17:41132887-41132967 1.0000 80 chr13:95953779-95953859 1.0000 80 chr16:89753252-89753332 1.0000 80 chr3:186545278-186545358 1.0000 80 chr4:5053201-5053281 1.0000 80 chr15:67546612-67546692 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_E2F6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.127 C 0.371 G 0.377 T 0.126 Background letter frequencies (from file dataset with add-one prior applied): A 0.127 C 0.371 G 0.377 T 0.126 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YTCCCGCC MEME-1 width = 8 sites = 77 llr = 590 E-value = 3.2e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 4:9aa:97 probability G ::1::911 matrix T 6a:::1:2 bits 3.0 * 2.7 * 2.4 * 2.1 * Relative 1.8 * Entropy 1.5 ** ** (11.1 bits) 1.2 ******* 0.9 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTCCCGCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:72848625-72848705 35 4.21e-05 TCGACGCCCA TTCCCGCC TGCCGGCCCA chr19:13928951-13929031 19 4.21e-05 CCAGCTCTTT TTCCCGCC ACCTAGTGCG chr1:226309783-226309863 35 4.21e-05 GTCCCGCGGT TTCCCGCC GCCTCACCAG chr21:33104559-33104639 28 4.21e-05 GCTGGGCGCT TTcccgcc ggcggcggcg chr8:61199463-61199543 44 4.21e-05 GCTGCCGTAa ttcccgcc ctcagtaggc chr20:49092577-49092657 19 4.21e-05 CAGTCCCTAG TTCCCGCC CAGCTTGAAG chr10:43047782-43047862 35 4.21e-05 CCGCGGGTGC TTCCCGCC ACCTCGCTCG chr6:34203243-34203323 15 4.21e-05 CCCTGGCGCC TTCCCGCC CAGGCGCCCC chr15:45459120-45459200 30 4.21e-05 CCCGCCAGCC TTCCCGCC TCCGCCGGCG chr2:61035712-61035792 64 4.21e-05 tttTACGTTT TTCCCGCC CTGCGCAGT chr11:63580753-63580833 11 4.21e-05 CCCTCGGCCC TTCCCGCC GCCTCCCGGG chrX:53123018-53123098 49 4.21e-05 GGCTTCCGGC TTCCCGCC TGCGTATTCC chr12:3068725-3068805 42 4.21e-05 GCCGCCCGCG TTCCCGCC TTGGACCTCT chr15:66914640-66914720 43 4.21e-05 ccttcccgcc ttcccgcc ttcccgccGG chr19:47292084-47292164 12 4.21e-05 AGGGTGCTGT TTCCCGCC AAAGGAACTG chr1:23504279-23504359 50 4.21e-05 AGGCAGGGCG TTCCCGCC AGCCGGCTTC chr9:93563934-93564014 16 4.21e-05 CTTCAGCCGA TTCCCGCC CAGCTCCGGG chr14:24664499-24664579 26 4.21e-05 CTCGGGTCCC TTCCCGCC ACAGCCCCGG chr16:2058912-2058992 38 4.21e-05 CTTTTCTCCC TTCCCGCC AAGAAGCGCG chr11:61276943-61277023 47 4.21e-05 CTTCGAGGAG TTCCCGCC CGCGCTGCTG chr16:3355916-3355996 49 4.21e-05 CGCAGACTCT TTCCCGCC TCCGCCGGCA chr2:239112449-239112529 50 4.21e-05 CCCGCGGTGT TTCCCGCC TTGGCGAACC chr12:26111715-26111795 43 4.21e-05 agcctcgccc ttcccgcc cGCGGCGGCG chr17:35767283-35767363 30 5.64e-05 GCCTCGCCAT TTCCCGCT CAGCCCTGGA chr4:87813511-87813591 38 5.64e-05 ACACGCCTCC TTCCCGCT CGCCGCGGGC chr4:37688135-37688215 52 5.64e-05 CTCCCTGCCA TTCCCGCT TCCTTTCCAA chr10:6187351-6187431 63 5.64e-05 GAATTCCCGC TTCCCGCT GCGCTCCAGC chr7:98099907-98099987 38 5.64e-05 GCGGCCGGGA TTCCCGCT TCCCTGCACC chr8:142183487-142183567 41 5.64e-05 GAAGCCTGCC TTCCCGCT CAGCTCACCC chr1:41249311-41249391 50 7.04e-05 GCTCCGCGCG TTCCCTCC CTCCGCCTCG chr11:12768202-12768282 30 7.04e-05 TCTGGGGCAC TTCCCTCC TACACTTGGC chr4:5053201-5053281 43 1.94e-04 CGCCTCGCGT CTCCCGCC CGCTGTAGCC chr3:186545278-186545358 30 1.94e-04 GCTCGTCTAG CTCCCGCC GCCCGGCGAA chr19:10614038-10614118 43 1.94e-04 AGCGGCGATT CTCCCGCC CTTCCCGCAG chr6:74019452-74019532 42 1.94e-04 AGTACAGCTC CTCCCGCC ACCGCAGAGC chr6:150464165-150464245 2 1.94e-04 C CTCCCGCC CTCCCAGAGC chr1:156594372-156594452 11 1.94e-04 CCTCCGCCGT CTCCCGCC AGCTTGGACC chr4:159689956-159690036 62 1.94e-04 CACCTCCCGC CTCCCGCC GGGGTTACGT chrX:100353034-100353114 36 1.94e-04 GCCACCGAGC CTCCCGCC ACCTCTAGCC chr15:65596229-65596309 25 1.94e-04 TCAGGCGATC CTCCCGCC TAGAATAAGG chr2:68870603-68870683 50 1.94e-04 GCTCCAGACG CTCCCGCC CAGGGCGATC chr8:54790510-54790590 37 1.94e-04 CTCGCGACCG CTCCCGCC TTCAGGACCC chr14:105864532-10586461 19 1.94e-04 CAGCGCCTCC CTcccgcc cgcgcgcccc chr17:27619699-27619779 30 1.94e-04 CTGCCCGCGC CTCCCGCC GCACCCGGGA chr7:73703807-73703887 49 1.94e-04 CGGTGCGCGC CTCCCGCC TTCCCAGAGA chr11:68778579-68778659 48 1.94e-04 ccgcgcactc ctcccgcc cgggggcggg chr6:73972914-73972994 63 1.94e-04 CAGAGCCCTC CTCCCGCC TGCTCTGTGT chr17:43045654-43045734 43 1.94e-04 cgcctcccgc ctcccgcc tcccgcctgc chr19:16222114-16222194 41 2.42e-04 CTACCTTGCT TTCCCGCG CTCGCCTCGG chr1:6268869-6268949 15 2.42e-04 GCGGCTGCGG TTCCCGCG CTGGCCGCGG chr12:122460445-12246052 22 2.42e-04 TGAAAGCGGC TTcccgcg cgccggggcc chr2:233498339-233498419 51 2.42e-04 CGTCCCCGCG TTCCCGCG TCCTGCGATC chr2:71503614-71503694 22 2.42e-04 CGCCCCCGGC TTCCCGCG CTCCGCGTCC chr11:118901659-11890173 49 2.84e-04 GACTTACTCC CTCCCGCT GGTCACGCTG chr17:42441140-42441220 49 2.84e-04 CCGGCTCCCG CTCCCGCT GCGGCGCCCG chr18:5296962-5297042 23 2.84e-04 TGGGAAGTCC CTCCCGCT CCCGCGTTTT chr19:1249322-1249402 52 2.84e-04 GGACTTCGCG CTCCCGCT TCCGCTCGCG chr12:131356268-13135634 26 2.84e-04 CGCCCAACGT CTCCCGCT CAGGGGCGCG chr10:86016923-86017003 27 2.84e-04 AACTTGGCAG CTCCCGCT GAAATTAAAG chr5:139085038-139085118 24 3.25e-04 ATCACAGGAG CTCCCTCC TTCTATATTT chr9:140009176-140009256 49 3.25e-04 GGGCGCGCTC CTCCCTCC AGGCCCCACG chr19:12904894-12904974 36 3.25e-04 TCGCGCTGGG CTCCCTCC CGCGCAGCTG chr3:5229041-5229121 46 4.25e-04 TGGCTGGAAG TTCCCTCG CGGGCCGGCG chr17:40897136-40897216 31 4.25e-04 CTACTGTCAT TTGCCGCC AAAACCCCGC chr13:27998755-27998835 57 4.25e-04 GGCGCGCCGG TTCCCGGC ACGTGTCTCG chr19:55685964-55686044 18 4.25e-04 CCGCACCTTT TTGCCGCC CTGCAGCAGG chr9:14315275-14315355 14 4.25e-04 TCGCCGCGGT TTGCCGCC CTCCCCGGGG chr21:43374235-43374315 17 4.25e-04 AGGCCCGGCC TTcccggc cccgccacgt chr17:38020413-38020493 63 4.25e-04 TGGCGGGAGA TTCCCGGC GCGGGGAGTC chr3:197687570-197687650 39 4.25e-04 acaacacgga ttgccgcc ctcagtcccc chr6:73332945-73333025 28 5.79e-04 CGAAGCAACG CTCCCGCG CTGCAGGGGG chr11:134201886-13420196 5 5.79e-04 GAGG CTCCCGCG CGCGGCTGAG chr1:205290478-205290558 63 5.79e-04 GCCCCGAGCT CTCCCGCG CCTTCTTCAC chr6:84743368-84743448 32 5.79e-04 GGGGAGGCGG CTCCCGCG CTGCAGCCCT chr4:177241693-177241773 45 5.79e-04 GGGCTGGCGC CTCCCGCG CGTCCGGTGC chr17:36884684-36884764 27 5.79e-04 GCTTCGTGTG TTCCCACC CTCAGTGAGG chr4:58030348-58030428 64 6.08e-04 GGGGCTGTCC TTCCCGGT CAGCGTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:72848625-72848705 4.2e-05 34_[+1]_38 chr19:13928951-13929031 4.2e-05 18_[+1]_54 chr1:226309783-226309863 4.2e-05 34_[+1]_38 chr21:33104559-33104639 4.2e-05 27_[+1]_45 chr8:61199463-61199543 4.2e-05 43_[+1]_29 chr20:49092577-49092657 4.2e-05 18_[+1]_54 chr10:43047782-43047862 4.2e-05 34_[+1]_38 chr6:34203243-34203323 4.2e-05 14_[+1]_58 chr15:45459120-45459200 4.2e-05 29_[+1]_43 chr2:61035712-61035792 4.2e-05 63_[+1]_9 chr11:63580753-63580833 4.2e-05 10_[+1]_62 chrX:53123018-53123098 4.2e-05 48_[+1]_24 chr12:3068725-3068805 4.2e-05 41_[+1]_31 chr15:66914640-66914720 4.2e-05 42_[+1]_30 chr19:47292084-47292164 4.2e-05 11_[+1]_61 chr1:23504279-23504359 4.2e-05 49_[+1]_23 chr9:93563934-93564014 4.2e-05 15_[+1]_57 chr14:24664499-24664579 4.2e-05 25_[+1]_47 chr16:2058912-2058992 4.2e-05 37_[+1]_35 chr11:61276943-61277023 4.2e-05 46_[+1]_26 chr16:3355916-3355996 4.2e-05 48_[+1]_24 chr2:239112449-239112529 4.2e-05 49_[+1]_23 chr12:26111715-26111795 4.2e-05 42_[+1]_30 chr17:35767283-35767363 5.6e-05 29_[+1]_43 chr4:87813511-87813591 5.6e-05 37_[+1]_35 chr4:37688135-37688215 5.6e-05 51_[+1]_21 chr10:6187351-6187431 5.6e-05 62_[+1]_10 chr7:98099907-98099987 5.6e-05 37_[+1]_35 chr8:142183487-142183567 5.6e-05 40_[+1]_32 chr1:41249311-41249391 7e-05 49_[+1]_23 chr11:12768202-12768282 7e-05 29_[+1]_43 chr4:5053201-5053281 0.00019 42_[+1]_30 chr3:186545278-186545358 0.00019 29_[+1]_43 chr19:10614038-10614118 0.00019 42_[+1]_30 chr6:74019452-74019532 0.00019 41_[+1]_31 chr6:150464165-150464245 0.00019 1_[+1]_71 chr1:156594372-156594452 0.00019 10_[+1]_62 chr4:159689956-159690036 0.00019 61_[+1]_11 chrX:100353034-100353114 0.00019 35_[+1]_37 chr15:65596229-65596309 0.00019 24_[+1]_48 chr2:68870603-68870683 0.00019 49_[+1]_23 chr8:54790510-54790590 0.00019 36_[+1]_36 chr14:105864532-10586461 0.00019 18_[+1]_54 chr17:27619699-27619779 0.00019 29_[+1]_43 chr7:73703807-73703887 0.00019 48_[+1]_24 chr11:68778579-68778659 0.00019 47_[+1]_25 chr6:73972914-73972994 0.00019 62_[+1]_10 chr17:43045654-43045734 0.00019 42_[+1]_30 chr19:16222114-16222194 0.00024 40_[+1]_32 chr1:6268869-6268949 0.00024 14_[+1]_58 chr12:122460445-12246052 0.00024 21_[+1]_51 chr2:233498339-233498419 0.00024 50_[+1]_22 chr2:71503614-71503694 0.00024 21_[+1]_51 chr11:118901659-11890173 0.00028 48_[+1]_24 chr17:42441140-42441220 0.00028 48_[+1]_24 chr18:5296962-5297042 0.00028 22_[+1]_50 chr19:1249322-1249402 0.00028 51_[+1]_21 chr12:131356268-13135634 0.00028 25_[+1]_47 chr10:86016923-86017003 0.00028 26_[+1]_46 chr5:139085038-139085118 0.00033 23_[+1]_49 chr9:140009176-140009256 0.00033 48_[+1]_24 chr19:12904894-12904974 0.00033 35_[+1]_37 chr3:5229041-5229121 0.00043 45_[+1]_27 chr17:40897136-40897216 0.00043 30_[+1]_42 chr13:27998755-27998835 0.00043 56_[+1]_16 chr19:55685964-55686044 0.00043 17_[+1]_55 chr9:14315275-14315355 0.00043 13_[+1]_59 chr21:43374235-43374315 0.00043 16_[+1]_56 chr17:38020413-38020493 0.00043 62_[+1]_10 chr3:197687570-197687650 0.00043 38_[+1]_34 chr6:73332945-73333025 0.00058 27_[+1]_45 chr11:134201886-13420196 0.00058 4_[+1]_68 chr1:205290478-205290558 0.00058 62_[+1]_10 chr6:84743368-84743448 0.00058 31_[+1]_41 chr4:177241693-177241773 0.00058 44_[+1]_28 chr17:36884684-36884764 0.00058 26_[+1]_46 chr4:58030348-58030428 0.00061 63_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCCCGCC width=8 seqs=77 chr7:72848625-72848705 ( 35) TTCCCGCC 1 chr19:13928951-13929031 ( 19) TTCCCGCC 1 chr1:226309783-226309863 ( 35) TTCCCGCC 1 chr21:33104559-33104639 ( 28) TTCCCGCC 1 chr8:61199463-61199543 ( 44) TTCCCGCC 1 chr20:49092577-49092657 ( 19) TTCCCGCC 1 chr10:43047782-43047862 ( 35) TTCCCGCC 1 chr6:34203243-34203323 ( 15) TTCCCGCC 1 chr15:45459120-45459200 ( 30) TTCCCGCC 1 chr2:61035712-61035792 ( 64) TTCCCGCC 1 chr11:63580753-63580833 ( 11) TTCCCGCC 1 chrX:53123018-53123098 ( 49) TTCCCGCC 1 chr12:3068725-3068805 ( 42) TTCCCGCC 1 chr15:66914640-66914720 ( 43) TTCCCGCC 1 chr19:47292084-47292164 ( 12) TTCCCGCC 1 chr1:23504279-23504359 ( 50) TTCCCGCC 1 chr9:93563934-93564014 ( 16) TTCCCGCC 1 chr14:24664499-24664579 ( 26) TTCCCGCC 1 chr16:2058912-2058992 ( 38) TTCCCGCC 1 chr11:61276943-61277023 ( 47) TTCCCGCC 1 chr16:3355916-3355996 ( 49) TTCCCGCC 1 chr2:239112449-239112529 ( 50) TTCCCGCC 1 chr12:26111715-26111795 ( 43) TTCCCGCC 1 chr17:35767283-35767363 ( 30) TTCCCGCT 1 chr4:87813511-87813591 ( 38) TTCCCGCT 1 chr4:37688135-37688215 ( 52) TTCCCGCT 1 chr10:6187351-6187431 ( 63) TTCCCGCT 1 chr7:98099907-98099987 ( 38) TTCCCGCT 1 chr8:142183487-142183567 ( 41) TTCCCGCT 1 chr1:41249311-41249391 ( 50) TTCCCTCC 1 chr11:12768202-12768282 ( 30) TTCCCTCC 1 chr4:5053201-5053281 ( 43) CTCCCGCC 1 chr3:186545278-186545358 ( 30) CTCCCGCC 1 chr19:10614038-10614118 ( 43) CTCCCGCC 1 chr6:74019452-74019532 ( 42) CTCCCGCC 1 chr6:150464165-150464245 ( 2) CTCCCGCC 1 chr1:156594372-156594452 ( 11) CTCCCGCC 1 chr4:159689956-159690036 ( 62) CTCCCGCC 1 chrX:100353034-100353114 ( 36) CTCCCGCC 1 chr15:65596229-65596309 ( 25) CTCCCGCC 1 chr2:68870603-68870683 ( 50) CTCCCGCC 1 chr8:54790510-54790590 ( 37) CTCCCGCC 1 chr14:105864532-10586461 ( 19) CTCCCGCC 1 chr17:27619699-27619779 ( 30) CTCCCGCC 1 chr7:73703807-73703887 ( 49) CTCCCGCC 1 chr11:68778579-68778659 ( 48) CTCCCGCC 1 chr6:73972914-73972994 ( 63) CTCCCGCC 1 chr17:43045654-43045734 ( 43) CTCCCGCC 1 chr19:16222114-16222194 ( 41) TTCCCGCG 1 chr1:6268869-6268949 ( 15) TTCCCGCG 1 chr12:122460445-12246052 ( 22) TTCCCGCG 1 chr2:233498339-233498419 ( 51) TTCCCGCG 1 chr2:71503614-71503694 ( 22) TTCCCGCG 1 chr11:118901659-11890173 ( 49) CTCCCGCT 1 chr17:42441140-42441220 ( 49) CTCCCGCT 1 chr18:5296962-5297042 ( 23) CTCCCGCT 1 chr19:1249322-1249402 ( 52) CTCCCGCT 1 chr12:131356268-13135634 ( 26) CTCCCGCT 1 chr10:86016923-86017003 ( 27) CTCCCGCT 1 chr5:139085038-139085118 ( 24) CTCCCTCC 1 chr9:140009176-140009256 ( 49) CTCCCTCC 1 chr19:12904894-12904974 ( 36) CTCCCTCC 1 chr3:5229041-5229121 ( 46) TTCCCTCG 1 chr17:40897136-40897216 ( 31) TTGCCGCC 1 chr13:27998755-27998835 ( 57) TTCCCGGC 1 chr19:55685964-55686044 ( 18) TTGCCGCC 1 chr9:14315275-14315355 ( 14) TTGCCGCC 1 chr21:43374235-43374315 ( 17) TTCCCGGC 1 chr17:38020413-38020493 ( 63) TTCCCGGC 1 chr3:197687570-197687650 ( 39) TTGCCGCC 1 chr6:73332945-73333025 ( 28) CTCCCGCG 1 chr11:134201886-13420196 ( 5) CTCCCGCG 1 chr1:205290478-205290558 ( 63) CTCCCGCG 1 chr6:84743368-84743448 ( 32) CTCCCGCG 1 chr4:177241693-177241773 ( 45) CTCCCGCG 1 chr17:36884684-36884764 ( 27) TTCCCACC 1 chr4:58030348-58030428 ( 64) TTCCCGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.33575 E= 3.2e-026 -1291 12 -1291 225 -1291 -1291 -1291 299 -1291 135 -286 -1291 -1291 143 -1291 -1291 -1291 143 -1291 -1291 -328 -1291 127 -69 -1291 135 -286 -1291 -1291 89 -140 43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 3.2e-026 0.000000 0.402597 0.000000 0.597403 0.000000 0.000000 0.000000 1.000000 0.000000 0.948052 0.051948 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.012987 0.000000 0.909091 0.077922 0.000000 0.948052 0.051948 0.000000 0.000000 0.688312 0.142857 0.168831 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCCCGCC MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TCCCGCC -------------------------------------------------------------------------------- Time 5.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGGAR MEME-2 width = 8 sites = 80 llr = 613 E-value = 1.3e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::::a6 pos.-specific C 3:a::1:: probability G 6a:aa9:4 matrix T :::1:::: bits 3.0 * 2.7 * 2.4 * 2.1 * Relative 1.8 * Entropy 1.5 ** * ** (11.1 bits) 1.2 **** ** 0.9 ******* 0.6 ******* 0.3 ******** 0.0 -------- Multilevel GGCGGGAA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89753252-89753332 60 4.56e-05 TTCCGGCACG GGCGGGAA CGACAGTCCC chr15:23723194-23723274 57 4.56e-05 GGACCTGCAA GGCGGGAA TCAGCCACAG chr20:34189500-34189580 64 4.56e-05 GCGCGTCAGC GGCGGGAA GAGCTCCAC chr19:10614038-10614118 22 4.56e-05 GAAAGGGCGC GGCGGGAA AGGAGCGGCG chr17:59520935-59521015 24 4.56e-05 GGCCACAGGT GGCGGGAA GGCGCAGGCC chr6:74019452-74019532 65 4.56e-05 AGAGCCCGCC GGCGGGAA GAGACCAG chr17:47755655-47755735 17 4.56e-05 AGTAAAAAGA GGCGGGAA CTTGGAGGGG chr13:39612471-39612551 22 4.56e-05 CTGCCCTGAG GGCGGGAA AGGGTGGTCA chr16:67281546-67281626 35 4.56e-05 TGGCTAGGAG GGCGGGAA AAACCGAGCT chr10:69523835-69523915 25 4.56e-05 CCCCAGTCTT GGCGGGAA ACGCCGCGGA chr1:244014123-244014203 23 4.56e-05 GTCGCTCCCG GGCGGGAA GTTCTGGGTT chr20:58508673-58508753 60 4.56e-05 AACGGCGGAA GGCGGGAA GCGCCCGTCC chr3:196729998-196730078 41 4.56e-05 GGCGGCGGTT GGCGGGAA gggccgcgcg chr1:153377309-153377389 16 4.56e-05 CCTACAGAAG GGCGGGAA CCACGAAGGA chr1:3370965-3371045 55 4.56e-05 GCGGCGGCTC GGCGGGAA TCGAGAGGCG chr19:1568475-1568555 27 4.56e-05 CCGGCGCTCG GGCGGGAA CCCGGGCGCA chr22:22290678-22290758 13 4.56e-05 AAAAAAAAAA GGCGGGAA CAGCACACAA chr11:67407641-67407721 28 4.56e-05 CAGACTGGAT GGCGGGAA GCCCAGGTCC chr7:54842006-54842086 57 4.56e-05 CCTGCTCGGA GGCGGGAA ACCCTGCAGC chr17:30813473-30813553 34 4.56e-05 cgggcgccgc ggcgggAA CAAAGGCAGC chr1:23670364-23670444 53 4.56e-05 AGCGAGCGGA GGCGGGAA AAGCACGGCC chr19:48076523-48076603 64 4.56e-05 GCTTGCCGCG GGCGGGAA AGGAGGCGG chr15:67546612-67546692 41 6.09e-05 ggctgagcag agcgggaa atcagtctca chr4:44728499-44728579 24 6.09e-05 ATGCTGGAAC AGCGGGAA CAAGCAACAC chr17:27619699-27619779 47 6.09e-05 CGCACCCGGG AGCGGGAA ACGCGGCCGC chr6:169284803-169284883 28 1.06e-04 TCGCGTGAGA CGCGGGAA GGACCGGGGA chr3:13461814-13461894 65 1.06e-04 TGGGCCTGAG CGCGGGAA CTCTGGGG chr4:58030348-58030428 40 1.06e-04 CAGGAGCCGG CGCGGGAA GGCGGCGGGG chr6:52226927-52227007 31 1.06e-04 CACAGCCACC CGCGGGAA GCTCGTGGCC chr2:3606227-3606307 28 1.06e-04 CTCGGGTCAC CGCGGGAA GCCCTTGAAC chr2:231276690-231276770 39 1.06e-04 gcggggcggc cgcgggAA CGGGAACGCG chr11:31837636-31837716 43 1.06e-04 CGGCGCGGCC CGCGGGAA AGTTTGTGCA chr1:9555459-9555539 40 1.06e-04 CGGCAGGAAG CGCGGGAA AGCGGCCGCG chr14:24664499-24664579 55 1.06e-04 GTCCTCACCG CGCGGGAA GGGCTGGCCG chr4:146654510-146654590 52 1.06e-04 TGACCTGGGG CGCGGGAA GGAGCCCGCT chr7:3340599-3340679 44 1.06e-04 GCGCAGCCGG CGCGGGAA GCCGCCCGAG chr6:33588950-33589030 35 1.06e-04 gagcgcgggg cgcgggaa ggcaggcggg chr6:73972914-73972994 39 1.06e-04 GCGGCTGCGG CGCGGGAA GCAACCCAGA chr13:95953779-95953859 73 2.41e-04 CGGGTGACGC GGCGGGAG chr12:49209311-49209391 68 2.41e-04 CAGGCGTGCA GGCGGGAG CAGCG chr15:77197789-77197869 55 2.41e-04 GGGGCGCCCA GGCGGGAG GTGTGAGGGT chr3:73045859-73045939 56 2.41e-04 CGGAGCGCGC GGCGGGAG CGAGGACGGC chr1:226309783-226309863 58 2.41e-04 ACCAGTCTCG GGCGGGAG GGGCCCCGGC chr6:39134375-39134455 26 2.41e-04 ACGATCTACG GGCGGGAG GGACTCGAGG chr3:97540807-97540887 24 2.41e-04 gccgggcgag ggcgggAG GAGGAGCAGC chr16:57318322-57318402 22 2.41e-04 AGCGCCCCGA GGCGGGAG CGCACGAAGC chr14:95623442-95623522 55 2.41e-04 TCCGCGCGGA GGCGGGAG CGCGGCCAGG chr17:38020413-38020493 54 2.41e-04 GCGCGCAGCT GGCGGGAG ATTCCCGGCG chr19:55895116-55895196 46 2.41e-04 AGGCGCAcgc ggcgggag ccggcggcgg chr1:43638390-43638470 24 2.41e-04 AGAACTGTTT GGCGGGAG ATCATGTCAG chr20:42295692-42295772 23 2.41e-04 CGACGCGCTT GGCGGGAG ATAGAAAAGT chrX:153714367-153714447 28 2.41e-04 CGCCTCGGGC GGCGGGAG CGGAGCGCTG chr15:79237360-79237440 67 2.41e-04 GTGGAGGAGC GGCGGGAG CGCGAA chr2:175199665-175199745 27 2.41e-04 GAGTTTAGCC GGCGGGAG CCTGGAGTCC chr11:109963779-10996385 17 2.41e-04 CAGCTGTCCG GGCGGGAG GCATGAGGGA chr17:74236604-74236684 28 2.41e-04 GGCGAGGCGG GGCGGGAG CGCCCGCGCC chr3:5229041-5229121 37 2.56e-04 CTCTCCCATT GGCTGGAA GTTCCCTCGC chr10:86016923-86017003 11 2.56e-04 GTTTGTGCGG GGCTGGAA CTTGGCAGCT chr15:90319785-90319865 66 3.02e-04 AGCGCCAGCG AGCGGGAG AAACTGC chr19:36195305-36195385 39 3.02e-04 AGCTGGCCTG AGCGGGAG AATGCGGCCC chr9:14315275-14315355 59 3.02e-04 CCTCGCTCTG AGCGGGAG GACCGGGCCG chr8:1771922-1772002 9 3.02e-04 CGTTGGGC AGCGGGAG GGGGCGCGGG chr20:62166361-62166441 26 3.02e-04 ACAGCTTCCG AGCGGGAG ATGCAGCCAA chr7:98030162-98030242 71 3.02e-04 GACTCCGGGC AGCGGGAG GG chr18:66382356-66382436 32 4.35e-04 TCCGGCTATG CGCGGGAG TGCGGCGCAT chr19:18700367-18700447 17 4.35e-04 GCCGCCGCCT CGCGGGAG GTGCTGGCGG chrX:37545055-37545135 41 4.35e-04 CTGCGCAGAG CGCGGGAG CGGTTTGGGG chr12:122711061-12271114 58 4.35e-04 CATCGCGCTG CGCGGGAG CCCCAGGACG chr17:36831341-36831421 40 4.35e-04 TGGGAGGGAG CGCGGGAG GGAGCGTGCG chr5:72512043-72512123 58 4.35e-04 GGACCTGGAG CGCGGGAG CCAGGACGGC chr8:131455866-131455946 12 4.35e-04 CCAGGCGAGG CGCGGGAG CCGAGCGCGG chr16:67198570-67198650 63 4.80e-04 GGGCGGAGCG GGCGGCAA ACGCAGCACT chr16:2510088-2510168 25 4.80e-04 GCTCTTCAGA GGCGGCAA ATTGCAAGGA chr7:98099907-98099987 70 4.80e-04 ATGCCCGAGA GGCGGCAA CGT chr7:100806343-100806423 67 4.80e-04 GTGGCGCGAA GGCGGCAA GGCGTG chr3:46853996-46854076 53 4.80e-04 CATGGGTTCT GGCGGCAA CTTGGAGCGC chr19:10676587-10676667 35 5.59e-04 GGTTGTACCG CGCGGCAA ACGCCGCGTT chr22:38610673-38610753 39 5.59e-04 CGACGCGCTG CGCGGCAA GTGCGAGGCG chr19:56151537-56151617 9 6.04e-04 CGCCACGT GGCTGGAG GAGGAGCTGC chr16:1813702-1813782 53 6.04e-04 GCAGGCCTGC GGCTGGAG CCTGCCCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89753252-89753332 4.6e-05 59_[+2]_13 chr15:23723194-23723274 4.6e-05 56_[+2]_16 chr20:34189500-34189580 4.6e-05 63_[+2]_9 chr19:10614038-10614118 4.6e-05 21_[+2]_51 chr17:59520935-59521015 4.6e-05 23_[+2]_49 chr6:74019452-74019532 4.6e-05 64_[+2]_8 chr17:47755655-47755735 4.6e-05 16_[+2]_56 chr13:39612471-39612551 4.6e-05 21_[+2]_51 chr16:67281546-67281626 4.6e-05 34_[+2]_38 chr10:69523835-69523915 4.6e-05 24_[+2]_48 chr1:244014123-244014203 4.6e-05 22_[+2]_50 chr20:58508673-58508753 4.6e-05 59_[+2]_13 chr3:196729998-196730078 4.6e-05 40_[+2]_32 chr1:153377309-153377389 4.6e-05 15_[+2]_57 chr1:3370965-3371045 4.6e-05 54_[+2]_18 chr19:1568475-1568555 4.6e-05 26_[+2]_46 chr22:22290678-22290758 4.6e-05 12_[+2]_60 chr11:67407641-67407721 4.6e-05 27_[+2]_45 chr7:54842006-54842086 4.6e-05 56_[+2]_16 chr17:30813473-30813553 4.6e-05 33_[+2]_39 chr1:23670364-23670444 4.6e-05 52_[+2]_20 chr19:48076523-48076603 4.6e-05 63_[+2]_9 chr15:67546612-67546692 6.1e-05 40_[+2]_32 chr4:44728499-44728579 6.1e-05 23_[+2]_49 chr17:27619699-27619779 6.1e-05 46_[+2]_26 chr6:169284803-169284883 0.00011 27_[+2]_45 chr3:13461814-13461894 0.00011 64_[+2]_8 chr4:58030348-58030428 0.00011 39_[+2]_33 chr6:52226927-52227007 0.00011 30_[+2]_42 chr2:3606227-3606307 0.00011 27_[+2]_45 chr2:231276690-231276770 0.00011 38_[+2]_34 chr11:31837636-31837716 0.00011 42_[+2]_30 chr1:9555459-9555539 0.00011 39_[+2]_33 chr14:24664499-24664579 0.00011 54_[+2]_18 chr4:146654510-146654590 0.00011 51_[+2]_21 chr7:3340599-3340679 0.00011 43_[+2]_29 chr6:33588950-33589030 0.00011 34_[+2]_38 chr6:73972914-73972994 0.00011 38_[+2]_34 chr13:95953779-95953859 0.00024 72_[+2] chr12:49209311-49209391 0.00024 67_[+2]_5 chr15:77197789-77197869 0.00024 54_[+2]_18 chr3:73045859-73045939 0.00024 55_[+2]_17 chr1:226309783-226309863 0.00024 57_[+2]_15 chr6:39134375-39134455 0.00024 25_[+2]_47 chr3:97540807-97540887 0.00024 23_[+2]_49 chr16:57318322-57318402 0.00024 21_[+2]_51 chr14:95623442-95623522 0.00024 54_[+2]_18 chr17:38020413-38020493 0.00024 53_[+2]_19 chr19:55895116-55895196 0.00024 45_[+2]_27 chr1:43638390-43638470 0.00024 23_[+2]_49 chr20:42295692-42295772 0.00024 22_[+2]_50 chrX:153714367-153714447 0.00024 27_[+2]_45 chr15:79237360-79237440 0.00024 66_[+2]_6 chr2:175199665-175199745 0.00024 26_[+2]_46 chr11:109963779-10996385 0.00024 16_[+2]_56 chr17:74236604-74236684 0.00024 27_[+2]_45 chr3:5229041-5229121 0.00026 36_[+2]_36 chr10:86016923-86017003 0.00026 10_[+2]_62 chr15:90319785-90319865 0.0003 65_[+2]_7 chr19:36195305-36195385 0.0003 38_[+2]_34 chr9:14315275-14315355 0.0003 58_[+2]_14 chr8:1771922-1772002 0.0003 8_[+2]_64 chr20:62166361-62166441 0.0003 25_[+2]_47 chr7:98030162-98030242 0.0003 70_[+2]_2 chr18:66382356-66382436 0.00043 31_[+2]_41 chr19:18700367-18700447 0.00043 16_[+2]_56 chrX:37545055-37545135 0.00043 40_[+2]_32 chr12:122711061-12271114 0.00043 57_[+2]_15 chr17:36831341-36831421 0.00043 39_[+2]_33 chr5:72512043-72512123 0.00043 57_[+2]_15 chr8:131455866-131455946 0.00043 11_[+2]_61 chr16:67198570-67198650 0.00048 62_[+2]_10 chr16:2510088-2510168 0.00048 24_[+2]_48 chr7:98099907-98099987 0.00048 69_[+2]_3 chr7:100806343-100806423 0.00048 66_[+2]_6 chr3:46853996-46854076 0.00048 52_[+2]_20 chr19:10676587-10676667 0.00056 34_[+2]_38 chr22:38610673-38610753 0.00056 38_[+2]_34 chr19:56151537-56151617 0.0006 8_[+2]_64 chr16:1813702-1813782 0.0006 52_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGGAR width=8 seqs=80 chr16:89753252-89753332 ( 60) GGCGGGAA 1 chr15:23723194-23723274 ( 57) GGCGGGAA 1 chr20:34189500-34189580 ( 64) GGCGGGAA 1 chr19:10614038-10614118 ( 22) GGCGGGAA 1 chr17:59520935-59521015 ( 24) GGCGGGAA 1 chr6:74019452-74019532 ( 65) GGCGGGAA 1 chr17:47755655-47755735 ( 17) GGCGGGAA 1 chr13:39612471-39612551 ( 22) GGCGGGAA 1 chr16:67281546-67281626 ( 35) GGCGGGAA 1 chr10:69523835-69523915 ( 25) GGCGGGAA 1 chr1:244014123-244014203 ( 23) GGCGGGAA 1 chr20:58508673-58508753 ( 60) GGCGGGAA 1 chr3:196729998-196730078 ( 41) GGCGGGAA 1 chr1:153377309-153377389 ( 16) GGCGGGAA 1 chr1:3370965-3371045 ( 55) GGCGGGAA 1 chr19:1568475-1568555 ( 27) GGCGGGAA 1 chr22:22290678-22290758 ( 13) GGCGGGAA 1 chr11:67407641-67407721 ( 28) GGCGGGAA 1 chr7:54842006-54842086 ( 57) GGCGGGAA 1 chr17:30813473-30813553 ( 34) GGCGGGAA 1 chr1:23670364-23670444 ( 53) GGCGGGAA 1 chr19:48076523-48076603 ( 64) GGCGGGAA 1 chr15:67546612-67546692 ( 41) AGCGGGAA 1 chr4:44728499-44728579 ( 24) AGCGGGAA 1 chr17:27619699-27619779 ( 47) AGCGGGAA 1 chr6:169284803-169284883 ( 28) CGCGGGAA 1 chr3:13461814-13461894 ( 65) CGCGGGAA 1 chr4:58030348-58030428 ( 40) CGCGGGAA 1 chr6:52226927-52227007 ( 31) CGCGGGAA 1 chr2:3606227-3606307 ( 28) CGCGGGAA 1 chr2:231276690-231276770 ( 39) CGCGGGAA 1 chr11:31837636-31837716 ( 43) CGCGGGAA 1 chr1:9555459-9555539 ( 40) CGCGGGAA 1 chr14:24664499-24664579 ( 55) CGCGGGAA 1 chr4:146654510-146654590 ( 52) CGCGGGAA 1 chr7:3340599-3340679 ( 44) CGCGGGAA 1 chr6:33588950-33589030 ( 35) CGCGGGAA 1 chr6:73972914-73972994 ( 39) CGCGGGAA 1 chr13:95953779-95953859 ( 73) GGCGGGAG 1 chr12:49209311-49209391 ( 68) GGCGGGAG 1 chr15:77197789-77197869 ( 55) GGCGGGAG 1 chr3:73045859-73045939 ( 56) GGCGGGAG 1 chr1:226309783-226309863 ( 58) GGCGGGAG 1 chr6:39134375-39134455 ( 26) GGCGGGAG 1 chr3:97540807-97540887 ( 24) GGCGGGAG 1 chr16:57318322-57318402 ( 22) GGCGGGAG 1 chr14:95623442-95623522 ( 55) GGCGGGAG 1 chr17:38020413-38020493 ( 54) GGCGGGAG 1 chr19:55895116-55895196 ( 46) GGCGGGAG 1 chr1:43638390-43638470 ( 24) GGCGGGAG 1 chr20:42295692-42295772 ( 23) GGCGGGAG 1 chrX:153714367-153714447 ( 28) GGCGGGAG 1 chr15:79237360-79237440 ( 67) GGCGGGAG 1 chr2:175199665-175199745 ( 27) GGCGGGAG 1 chr11:109963779-10996385 ( 17) GGCGGGAG 1 chr17:74236604-74236684 ( 28) GGCGGGAG 1 chr3:5229041-5229121 ( 37) GGCTGGAA 1 chr10:86016923-86017003 ( 11) GGCTGGAA 1 chr15:90319785-90319865 ( 66) AGCGGGAG 1 chr19:36195305-36195385 ( 39) AGCGGGAG 1 chr9:14315275-14315355 ( 59) AGCGGGAG 1 chr8:1771922-1772002 ( 9) AGCGGGAG 1 chr20:62166361-62166441 ( 26) AGCGGGAG 1 chr7:98030162-98030242 ( 71) AGCGGGAG 1 chr18:66382356-66382436 ( 32) CGCGGGAG 1 chr19:18700367-18700447 ( 17) CGCGGGAG 1 chrX:37545055-37545135 ( 41) CGCGGGAG 1 chr12:122711061-12271114 ( 58) CGCGGGAG 1 chr17:36831341-36831421 ( 40) CGCGGGAG 1 chr5:72512043-72512123 ( 58) CGCGGGAG 1 chr8:131455866-131455946 ( 12) CGCGGGAG 1 chr16:67198570-67198650 ( 63) GGCGGCAA 1 chr16:2510088-2510168 ( 25) GGCGGCAA 1 chr7:98099907-98099987 ( 70) GGCGGCAA 1 chr7:100806343-100806423 ( 67) GGCGGCAA 1 chr3:46853996-46854076 ( 53) GGCGGCAA 1 chr19:10676587-10676667 ( 35) CGCGGCAA 1 chr22:38610673-38610753 ( 39) CGCGGCAA 1 chr19:56151537-56151617 ( 9) GGCTGGAG 1 chr16:1813702-1813782 ( 53) GGCTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.30533 E= 1.3e-029 -17 -43 70 -1297 -1297 -1297 141 -1297 -1297 143 -1297 -1297 -1297 -1297 133 -133 -1297 -1297 141 -1297 -1297 -208 128 -1297 298 -1297 -1297 -1297 222 -1297 13 -1297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.3e-029 0.112500 0.275000 0.612500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 1.000000 0.000000 0.000000 0.087500 0.912500 0.000000 1.000000 0.000000 0.000000 0.000000 0.587500 0.000000 0.412500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAR MEME-2 regular expression -------------------------------------------------------------------------------- [GC]GCGGGA[AG] -------------------------------------------------------------------------------- Time 8.69 secs. ******************************************************************************** ******************************************************************************** MOTIF VSCACGTG MEME-3 width = 8 sites = 96 llr = 686 E-value = 3.4e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 31:a:11: pos.-specific C 24a:8::: probability G 35::19:a matrix T 2:::2:9: bits 3.0 * 2.7 * 2.4 * * 2.1 * * Relative 1.8 * * Entropy 1.5 ** ** (10.3 bits) 1.2 ** *** 0.9 ** *** 0.6 ****** 0.3 ******** 0.0 -------- Multilevel GGCACGTG consensus AC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:122711061-12271114 22 1.50e-05 CAGCAGCTGC AGCACGTG GACGGTGGAC chr1:6187870-6187950 33 1.50e-05 CAGAGGCCGG AGCACGTG GTTGGAGGGC chr16:771577-771657 55 1.50e-05 CGGCAGGTGG AGCACGTG TTGTCGCTGC chr6:34203243-34203323 49 1.50e-05 CACCCGGTCA AGCACGTG CTGCCCGGGC chr14:91884453-91884533 17 1.50e-05 GTGGGGCCCC AGCACGTG GCGCATCCCT chr9:94661313-94661393 17 1.50e-05 AGCCCGCTTC AGCACGTG TGTCAGGACA chr19:3613072-3613152 43 1.50e-05 ATCCGGTTCC AGCACGTG CGCGTCCAGT chr17:30813473-30813553 49 1.50e-05 gAACAAAGGC AGCACGTG TCTGGGCGGG chr17:29886249-29886329 43 1.50e-05 ATGTGTCACC AGCACGTG GAGCCAGGTC chr16:1813702-1813782 15 1.50e-05 CAGGTGCGTG AGCACGTG CGTAACGACG chr19:19651204-19651284 55 2.97e-05 TGCTCCAACT ACCACGTG CGCTTCCGCT chr11:134201886-13420196 73 2.97e-05 ACACGCGATG ACCACGTG chr10:6187351-6187431 19 2.97e-05 TCCGGCCGCC ACCACGTG CCCGAGCCGG chr2:61035712-61035792 22 3.48e-05 gagggaacta agcatgtg cggccacacc chr22:20014849-20014929 26 3.48e-05 CCATGTGCAG AGCATGTG CTAGGGATGG chr17:36884684-36884764 60 3.48e-05 TGAGTGGGTG AGCATGTG GAGTTGGGTG chr4:2464255-2464335 37 4.97e-05 GCGGCCTTGC TGCACGTG TCGGCGCCGC chr8:30770542-30770622 41 4.97e-05 CCAGAGGCCC TGCACGTG GAAGCTCGAA chr9:14315275-14315355 40 4.97e-05 GGGTGCCCCG TGCACGTG GCCTCGCTCT chr16:67198570-67198650 11 4.97e-05 CCCGCGGGCT TGCACGTG GCCCCCGCCT chr1:181074877-181074957 44 4.97e-05 CGCTCCCGGC TGCACGTG CTGCCCCCGC chr6:33601441-33601521 52 4.97e-05 GGGAGACGGC TGCACGTG GGACGGCGAG chr22:22290678-22290758 51 4.97e-05 AGAGTGGGCC TGCACGTG GCAGTTCCAC chr8:131455866-131455946 48 5.47e-05 GGGGCGGGCG ACCATGTG CCGAGGGGGA chr19:50831513-50831593 22 5.47e-05 CAGCGGCGCC ACCATGTg ccgcccgcgc chrX:152912682-152912762 47 6.93e-05 ggGCTCGGCT TCCACGTG CGAGCCTGCA chr17:38020413-38020493 14 6.93e-05 ACTCGGCCTC TCCACGTG CTCCTGCCGT chr7:101457480-101457560 46 1.19e-04 CGCGCCGGTG GGCACGTG CGCGGggacc chr6:39134375-39134455 8 1.19e-04 GTGGCGC TGCATGTG ACGATCTACG chr19:39997724-39997804 71 1.19e-04 CGCTAACGGC GGCACGTG TG chr11:67407641-67407721 49 1.19e-04 CAGGTCCTGT GGCACGTG AACCCACACG chr22:19879849-19879929 10 1.24e-04 AGCGAAGTC AGCACATG CCCGAGCGGC chr15:42174183-42174263 42 1.73e-04 GCGCTCCAGC CGCACGTG GCGCCTCAGC chr12:123635470-12363555 34 1.73e-04 GCGGCGGCGG CGCACGTG CTGGCGGGCG chr3:113666667-113666747 42 1.73e-04 AGGCGGGCGG CGCACGTG CGGACAGGCG chr19:1568475-1568555 47 1.73e-04 CGGGCGCATC CGCACGTG CGGGCGCTGC chr17:59520935-59521015 47 2.22e-04 AGGCCTGGTG GCCACGTG GGCGCGAGCT chr17:56327193-56327273 41 2.22e-04 CCGGAGCCCG GCCACGTG GCGGTCACGT chr11:694784-694864 34 2.22e-04 GGCGCCCATG TCCATGTG CCCGGGCTCC chr1:236849735-236849815 12 2.22e-04 tggccgggcg gCCACGTG ACGGGCGGCG chr21:43374235-43374315 28 2.22e-04 Tcccggcccc gccacgtg cgcgcgtcgc chr8:1771922-1772002 29 2.22e-04 GGCGCGGGCG GCCACGTG GCCTCGAAGG chr5:172710914-172710994 16 2.22e-04 GAGACCGGGC GCCACGTG CTTACCCGGC chr1:153377309-153377389 38 2.22e-04 GAAGGACCCA GCCACGTG GTACTGCCTC chr20:36035050-36035130 16 2.22e-04 GGGGCGCAGG GCCACGTG CGAGCGCAAC chr11:68778579-68778659 20 2.22e-04 GCCTCAGCCA GCCACGTg cccccgcccg chr7:4721734-4721814 18 2.22e-04 GCTGGCGCGC GCCACGTG GGCTACGCTG chr8:61199463-61199543 59 2.42e-04 gccctcagta ggcatgtg ctgttcttcc chr20:49092577-49092657 58 2.42e-04 CTAAATTCAA GGCATGTG CCACATCCTT chr19:17392680-17392760 47 2.42e-04 ACCCAGCCAG GGCATGTG CTCGGAGGCC chr9:100747114-100747194 72 2.86e-04 CCTCTGGCCT CCCACGTG C chr3:38692889-38692969 35 2.86e-04 AACGTTTCAA CCCACGTG CAGCCGCCTT chr9:140009176-140009256 61 2.86e-04 CCCTCCAGGC CCCACGTG TTTCGGGCGC chr16:67282811-67282891 9 2.86e-04 GAGCGGGC CCCACGTG CCTGTGACGC chr2:3606227-3606307 62 2.86e-04 GCGCCCGGCA CCCACGTG CGGTAACCGC chr3:56836049-56836129 29 2.86e-04 GCCGGGAGGG CCCACGTG CCGCAGCGCG chr1:211500172-211500252 55 2.86e-04 CGCGCCGAGC CCCACGTG AGTCCGGCGG chr16:47177904-47177984 24 3.08e-04 GCCGCCTGTG CGCATGTg cccgccccgc chr4:146654510-146654590 36 3.08e-04 CGGCAGGGGC TGCACATG ACCTGGGGCG chr6:33588950-33589030 53 3.08e-04 ggcaggcggg tgcacatg ggtgccggcg chr8:22722471-22722551 34 3.48e-04 CGGGGCGGGC AGCACGAG GGGGCAGGTG chr10:181016-181096 13 3.48e-04 cgcgcgcATC GCCATGTG AGCGGCTGCC chr7:72848625-72848705 4 3.69e-04 GCG CCCATGTG CACCGACCAG chr12:107381008-10738108 40 4.01e-04 CCCTCCCCGC ACCACGAG GGCGAGTCGG chr10:85997190-85997270 67 4.24e-04 CAGGCCCCGC AGCATGAG GGCGTT chr7:100292108-100292188 9 4.24e-04 CCCGCCCC GACACGTG ACCTGGGCGC chr16:57318322-57318402 6 4.24e-04 GCAGC AGCATGAG CGCCCCGAGG chr19:12904894-12904974 55 4.24e-04 GCGCAGCTGG GACACGTG GAGGTGGGGG chrX:39966740-39966820 65 4.76e-04 TCCTGTCAGT CGCACATG GCCTTGGT chr10:103986097-10398617 54 4.76e-04 TGCGCCGCCG CGCACATG CCTAGGTTCG chr3:13461814-13461894 2 4.76e-04 C AGCAGGTG ATGAgcgcgg chr6:150464165-150464245 49 4.76e-04 CGCGGCGCAG AGCAGGTG CCGGGGAGCC chr19:55685964-55686044 30 4.76e-04 GCCGCCCTGC AGCAGGTG GACCTTGACG chr3:197687570-197687650 19 4.76e-04 agtcacccga cgcacatg gtacaacacg chr13:101241092-10124117 46 5.07e-04 CGCCCTCGCA CACACGTG GCCGCTCGCA chr15:23723194-23723274 19 5.07e-04 GGCCTTATCT GCCACATG TCTGCATGGT chr17:36831341-36831421 3 5.07e-04 CA CACACGTG GACCCGGCGC chr19:44259754-44259834 28 5.07e-04 AAAATTTAAA CACACGTG GGCGGAGTCT chr11:118901659-11890173 20 5.67e-04 AGTTCCCCGC CCCACATG CCGGGGACGT chr6:74019452-74019532 23 6.39e-04 GGTGCGCTAA GGCACGAG TAGTACAGCT chr9:138798882-138798962 41 6.39e-04 GCGGTCCAGG GGCACGAG GTCGGCGGCG chr14:93799448-93799528 28 6.39e-04 CCCGCTCAGG GTCACGTG GCCCGACGTC chr15:79237360-79237440 48 6.39e-04 GGGGGGGAGC GGCACGAG CGTGGAGGAG chr2:175199665-175199745 49 6.39e-04 GAGTCCGCTC GGCACGAG CGCGGGGACG chr16:1922065-1922145 61 6.72e-04 CACAGCCTCG TGCAGGTG CGACGGCCGC chr1:184005025-184005105 22 6.72e-04 GCTGTACTAT ATCACATG TTTGCTTTCG chr17:72848555-72848635 20 7.36e-04 CAGCCGCCAA CTCACGTG GCTGGCGTCG chr2:74776197-74776277 64 7.90e-04 CCAGGCGTCG GCCACGAG AGAGCGGGA chr1:1535048-1535128 11 7.90e-04 TAGGCGCCGC GCCACGAG CAGTTGAGCG chr17:6347521-6347601 37 7.90e-04 AAAGCCCGGA GCCACGAG GCTGGCGGCG chr19:1249322-1249402 30 7.90e-04 CGGGACCCCG GCCACGAG GCGCGGACTT chr13:30982716-30982796 28 7.90e-04 CCGCGGCCCA GCCACGAG GCTGCCGGTC chr11:66326771-66326851 8 7.90e-04 CTGCGGC GCCACGAG GCCTTTGAGA chr3:196729998-196730078 17 8.30e-04 CCCGCGCGGC TCCAGGTG GCGGGAGGCG chr19:10614038-10614118 56 1.04e-03 CCGCCCTTCC CGCAGGTG CCCGGCGCCC chr19:49242347-49242427 13 1.04e-03 GCCCAGCACG CGCAGGTG CTCCGCCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:122711061-12271114 1.5e-05 21_[+3]_51 chr1:6187870-6187950 1.5e-05 32_[+3]_40 chr16:771577-771657 1.5e-05 54_[+3]_18 chr6:34203243-34203323 1.5e-05 48_[+3]_24 chr14:91884453-91884533 1.5e-05 16_[+3]_56 chr9:94661313-94661393 1.5e-05 16_[+3]_56 chr19:3613072-3613152 1.5e-05 42_[+3]_30 chr17:30813473-30813553 1.5e-05 48_[+3]_24 chr17:29886249-29886329 1.5e-05 42_[+3]_30 chr16:1813702-1813782 1.5e-05 14_[+3]_58 chr19:19651204-19651284 3e-05 54_[+3]_18 chr11:134201886-13420196 3e-05 72_[+3] chr10:6187351-6187431 3e-05 18_[+3]_54 chr2:61035712-61035792 3.5e-05 21_[+3]_51 chr22:20014849-20014929 3.5e-05 25_[+3]_47 chr17:36884684-36884764 3.5e-05 59_[+3]_13 chr4:2464255-2464335 5e-05 36_[+3]_36 chr8:30770542-30770622 5e-05 40_[+3]_32 chr9:14315275-14315355 5e-05 39_[+3]_33 chr16:67198570-67198650 5e-05 10_[+3]_62 chr1:181074877-181074957 5e-05 43_[+3]_29 chr6:33601441-33601521 5e-05 51_[+3]_21 chr22:22290678-22290758 5e-05 50_[+3]_22 chr8:131455866-131455946 5.5e-05 47_[+3]_25 chr19:50831513-50831593 5.5e-05 21_[+3]_51 chrX:152912682-152912762 6.9e-05 46_[+3]_26 chr17:38020413-38020493 6.9e-05 13_[+3]_59 chr7:101457480-101457560 0.00012 45_[+3]_27 chr6:39134375-39134455 0.00012 7_[+3]_65 chr19:39997724-39997804 0.00012 70_[+3]_2 chr11:67407641-67407721 0.00012 48_[+3]_24 chr22:19879849-19879929 0.00012 9_[+3]_63 chr15:42174183-42174263 0.00017 41_[+3]_31 chr12:123635470-12363555 0.00017 33_[+3]_39 chr3:113666667-113666747 0.00017 41_[+3]_31 chr19:1568475-1568555 0.00017 46_[+3]_26 chr17:59520935-59521015 0.00022 46_[+3]_26 chr17:56327193-56327273 0.00022 40_[+3]_32 chr11:694784-694864 0.00022 33_[+3]_39 chr1:236849735-236849815 0.00022 11_[+3]_61 chr21:43374235-43374315 0.00022 27_[+3]_45 chr8:1771922-1772002 0.00022 28_[+3]_44 chr5:172710914-172710994 0.00022 15_[+3]_57 chr1:153377309-153377389 0.00022 37_[+3]_35 chr20:36035050-36035130 0.00022 15_[+3]_57 chr11:68778579-68778659 0.00022 19_[+3]_53 chr7:4721734-4721814 0.00022 17_[+3]_55 chr8:61199463-61199543 0.00024 58_[+3]_14 chr20:49092577-49092657 0.00024 57_[+3]_15 chr19:17392680-17392760 0.00024 46_[+3]_26 chr9:100747114-100747194 0.00029 71_[+3]_1 chr3:38692889-38692969 0.00029 34_[+3]_38 chr9:140009176-140009256 0.00029 60_[+3]_12 chr16:67282811-67282891 0.00029 8_[+3]_64 chr2:3606227-3606307 0.00029 61_[+3]_11 chr3:56836049-56836129 0.00029 28_[+3]_44 chr1:211500172-211500252 0.00029 54_[+3]_18 chr16:47177904-47177984 0.00031 23_[+3]_49 chr4:146654510-146654590 0.00031 35_[+3]_37 chr6:33588950-33589030 0.00031 52_[+3]_20 chr8:22722471-22722551 0.00035 33_[+3]_39 chr10:181016-181096 0.00035 12_[+3]_60 chr7:72848625-72848705 0.00037 3_[+3]_69 chr12:107381008-10738108 0.0004 39_[+3]_33 chr10:85997190-85997270 0.00042 66_[+3]_6 chr7:100292108-100292188 0.00042 8_[+3]_64 chr16:57318322-57318402 0.00042 5_[+3]_67 chr19:12904894-12904974 0.00042 54_[+3]_18 chrX:39966740-39966820 0.00048 64_[+3]_8 chr10:103986097-10398617 0.00048 53_[+3]_19 chr3:13461814-13461894 0.00048 1_[+3]_71 chr6:150464165-150464245 0.00048 48_[+3]_24 chr19:55685964-55686044 0.00048 29_[+3]_43 chr3:197687570-197687650 0.00048 18_[+3]_54 chr13:101241092-10124117 0.00051 45_[+3]_27 chr15:23723194-23723274 0.00051 18_[+3]_54 chr17:36831341-36831421 0.00051 2_[+3]_70 chr19:44259754-44259834 0.00051 27_[+3]_45 chr11:118901659-11890173 0.00057 19_[+3]_53 chr6:74019452-74019532 0.00064 22_[+3]_50 chr9:138798882-138798962 0.00064 40_[+3]_32 chr14:93799448-93799528 0.00064 27_[+3]_45 chr15:79237360-79237440 0.00064 47_[+3]_25 chr2:175199665-175199745 0.00064 48_[+3]_24 chr16:1922065-1922145 0.00067 60_[+3]_12 chr1:184005025-184005105 0.00067 21_[+3]_51 chr17:72848555-72848635 0.00074 19_[+3]_53 chr2:74776197-74776277 0.00079 63_[+3]_9 chr1:1535048-1535128 0.00079 10_[+3]_62 chr17:6347521-6347601 0.00079 36_[+3]_36 chr19:1249322-1249402 0.00079 29_[+3]_43 chr13:30982716-30982796 0.00079 27_[+3]_45 chr11:66326771-66326851 0.00079 7_[+3]_65 chr3:196729998-196730078 0.00083 16_[+3]_56 chr19:10614038-10614118 0.001 55_[+3]_17 chr19:49242347-49242427 0.001 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VSCACGTG width=8 seqs=96 chr12:122711061-12271114 ( 22) AGCACGTG 1 chr1:6187870-6187950 ( 33) AGCACGTG 1 chr16:771577-771657 ( 55) AGCACGTG 1 chr6:34203243-34203323 ( 49) AGCACGTG 1 chr14:91884453-91884533 ( 17) AGCACGTG 1 chr9:94661313-94661393 ( 17) AGCACGTG 1 chr19:3613072-3613152 ( 43) AGCACGTG 1 chr17:30813473-30813553 ( 49) AGCACGTG 1 chr17:29886249-29886329 ( 43) AGCACGTG 1 chr16:1813702-1813782 ( 15) AGCACGTG 1 chr19:19651204-19651284 ( 55) ACCACGTG 1 chr11:134201886-13420196 ( 73) ACCACGTG 1 chr10:6187351-6187431 ( 19) ACCACGTG 1 chr2:61035712-61035792 ( 22) AGCATGTG 1 chr22:20014849-20014929 ( 26) AGCATGTG 1 chr17:36884684-36884764 ( 60) AGCATGTG 1 chr4:2464255-2464335 ( 37) TGCACGTG 1 chr8:30770542-30770622 ( 41) TGCACGTG 1 chr9:14315275-14315355 ( 40) TGCACGTG 1 chr16:67198570-67198650 ( 11) TGCACGTG 1 chr1:181074877-181074957 ( 44) TGCACGTG 1 chr6:33601441-33601521 ( 52) TGCACGTG 1 chr22:22290678-22290758 ( 51) TGCACGTG 1 chr8:131455866-131455946 ( 48) ACCATGTG 1 chr19:50831513-50831593 ( 22) ACCATGTG 1 chrX:152912682-152912762 ( 47) TCCACGTG 1 chr17:38020413-38020493 ( 14) TCCACGTG 1 chr7:101457480-101457560 ( 46) GGCACGTG 1 chr6:39134375-39134455 ( 8) TGCATGTG 1 chr19:39997724-39997804 ( 71) GGCACGTG 1 chr11:67407641-67407721 ( 49) GGCACGTG 1 chr22:19879849-19879929 ( 10) AGCACATG 1 chr15:42174183-42174263 ( 42) CGCACGTG 1 chr12:123635470-12363555 ( 34) CGCACGTG 1 chr3:113666667-113666747 ( 42) CGCACGTG 1 chr19:1568475-1568555 ( 47) CGCACGTG 1 chr17:59520935-59521015 ( 47) GCCACGTG 1 chr17:56327193-56327273 ( 41) GCCACGTG 1 chr11:694784-694864 ( 34) TCCATGTG 1 chr1:236849735-236849815 ( 12) GCCACGTG 1 chr21:43374235-43374315 ( 28) GCCACGTG 1 chr8:1771922-1772002 ( 29) GCCACGTG 1 chr5:172710914-172710994 ( 16) GCCACGTG 1 chr1:153377309-153377389 ( 38) GCCACGTG 1 chr20:36035050-36035130 ( 16) GCCACGTG 1 chr11:68778579-68778659 ( 20) GCCACGTG 1 chr7:4721734-4721814 ( 18) GCCACGTG 1 chr8:61199463-61199543 ( 59) GGCATGTG 1 chr20:49092577-49092657 ( 58) GGCATGTG 1 chr19:17392680-17392760 ( 47) GGCATGTG 1 chr9:100747114-100747194 ( 72) CCCACGTG 1 chr3:38692889-38692969 ( 35) CCCACGTG 1 chr9:140009176-140009256 ( 61) CCCACGTG 1 chr16:67282811-67282891 ( 9) CCCACGTG 1 chr2:3606227-3606307 ( 62) CCCACGTG 1 chr3:56836049-56836129 ( 29) CCCACGTG 1 chr1:211500172-211500252 ( 55) CCCACGTG 1 chr16:47177904-47177984 ( 24) CGCATGTG 1 chr4:146654510-146654590 ( 36) TGCACATG 1 chr6:33588950-33589030 ( 53) TGCACATG 1 chr8:22722471-22722551 ( 34) AGCACGAG 1 chr10:181016-181096 ( 13) GCCATGTG 1 chr7:72848625-72848705 ( 4) CCCATGTG 1 chr12:107381008-10738108 ( 40) ACCACGAG 1 chr10:85997190-85997270 ( 67) AGCATGAG 1 chr7:100292108-100292188 ( 9) GACACGTG 1 chr16:57318322-57318402 ( 6) AGCATGAG 1 chr19:12904894-12904974 ( 55) GACACGTG 1 chrX:39966740-39966820 ( 65) CGCACATG 1 chr10:103986097-10398617 ( 54) CGCACATG 1 chr3:13461814-13461894 ( 2) AGCAGGTG 1 chr6:150464165-150464245 ( 49) AGCAGGTG 1 chr19:55685964-55686044 ( 30) AGCAGGTG 1 chr3:197687570-197687650 ( 19) CGCACATG 1 chr13:101241092-10124117 ( 46) CACACGTG 1 chr15:23723194-23723274 ( 19) GCCACATG 1 chr17:36831341-36831421 ( 3) CACACGTG 1 chr19:44259754-44259834 ( 28) CACACGTG 1 chr11:118901659-11890173 ( 20) CCCACATG 1 chr6:74019452-74019532 ( 23) GGCACGAG 1 chr9:138798882-138798962 ( 41) GGCACGAG 1 chr14:93799448-93799528 ( 28) GTCACGTG 1 chr15:79237360-79237440 ( 48) GGCACGAG 1 chr2:175199665-175199745 ( 49) GGCACGAG 1 chr16:1922065-1922145 ( 61) TGCAGGTG 1 chr1:184005025-184005105 ( 22) ATCACATG 1 chr17:72848555-72848635 ( 20) CTCACGTG 1 chr2:74776197-74776277 ( 64) GCCACGAG 1 chr1:1535048-1535128 ( 11) GCCACGAG 1 chr17:6347521-6347601 ( 37) GCCACGAG 1 chr19:1249322-1249402 ( 30) GCCACGAG 1 chr13:30982716-30982796 ( 28) GCCACGAG 1 chr11:66326771-66326851 ( 8) GCCACGAG 1 chr3:196729998-196730078 ( 17) TCCAGGTG 1 chr19:10614038-10614118 ( 56) CGCAGGTG 1 chr19:49242347-49242427 ( 13) CGCAGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.66664 E= 3.4e-027 115 -63 -22 32 -128 5 50 -201 -1323 143 -1323 -1323 298 -1323 -1323 -1323 -1323 105 -237 32 -43 -1323 127 -1323 20 -1323 -1323 277 -1323 -1323 141 -1323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 3.4e-027 0.281250 0.239583 0.322917 0.156250 0.052083 0.385417 0.531250 0.031250 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.770833 0.072917 0.156250 0.093750 0.000000 0.906250 0.000000 0.145833 0.000000 0.000000 0.854167 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSCACGTG MEME-3 regular expression -------------------------------------------------------------------------------- [GAC][GC]CACGTG -------------------------------------------------------------------------------- Time 12.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATTWWA MEME-4 width = 8 sites = 7 llr = 84 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a7911367 pos.-specific C :::::1:3 probability G :::::::: matrix T :319964: bits 3.0 * 2.7 * 2.4 * *** 2.1 ***** * Relative 1.8 ***** ** Entropy 1.5 ******** (17.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAATTTAA consensus T ATC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:44259754-44259834 19 6.61e-08 CCAGGGTCGA AAATTTAA ACACACGTGG chr10:86016923-86017003 36 1.98e-07 GCTCCCGCTG AAATTAAA GCGCGAGTCT chr10:69523835-69523915 67 1.31e-06 CAGAAATGCC AAATTTTC GGGAGC chr20:49092577-49092657 50 1.57e-06 TAGCAGGTCT AAATTCAA GGCATGTGCC chrX:39966740-39966820 1 2.74e-06 . ATTTTTTA AGCCTGCAAT chr5:139085038-139085118 36 3.26e-06 CCCTCCTTCT ATATTTTC ATATCAGGCT chr22:22290678-22290758 4 6.89e-06 GAA AAAAAAAA AGGCGGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44259754-44259834 6.6e-08 18_[+4]_54 chr10:86016923-86017003 2e-07 35_[+4]_37 chr10:69523835-69523915 1.3e-06 66_[+4]_6 chr20:49092577-49092657 1.6e-06 49_[+4]_23 chrX:39966740-39966820 2.7e-06 [+4]_72 chr5:139085038-139085118 3.3e-06 35_[+4]_37 chr22:22290678-22290758 6.9e-06 3_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATTWWA width=8 seqs=7 chr19:44259754-44259834 ( 19) AAATTTAA 1 chr10:86016923-86017003 ( 36) AAATTAAA 1 chr10:69523835-69523915 ( 67) AAATTTTC 1 chr20:49092577-49092657 ( 50) AAATTCAA 1 chrX:39966740-39966820 ( 1) ATTTTTTA 1 chr5:139085038-139085118 ( 36) ATATTTTC 1 chr22:22290678-22290758 ( 4) AAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.5704 E= 2.1e+000 298 -945 -945 -945 250 -945 -945 119 276 -945 -945 19 17 -945 -945 277 17 -945 -945 277 117 -137 -945 218 217 -945 -945 177 250 -38 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.1e+000 1.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.857143 0.000000 0.000000 0.142857 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.857143 0.285714 0.142857 0.000000 0.571429 0.571429 0.000000 0.000000 0.428571 0.714286 0.285714 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTWWA MEME-4 regular expression -------------------------------------------------------------------------------- A[AT]ATT[TA][AT][AC] -------------------------------------------------------------------------------- Time 15.45 secs. ******************************************************************************** ******************************************************************************** MOTIF WGCTCTTT MEME-5 width = 8 sites = 7 llr = 80 E-value = 3.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4::::::: pos.-specific C ::a:73:: probability G :a:::::: matrix T 6::a37aa bits 3.0 * ** 2.7 * ** 2.4 * ** 2.1 * * ** Relative 1.8 * * *** Entropy 1.5 **** *** (16.5 bits) 1.2 **** *** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCTCTTT consensus A TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:18871174-18871254 12 2.21e-06 CAGCGCCGCG TGCTCTTT GTTGAGCTCC chr11:12768202-12768282 6 2.21e-06 TGAGC TGCTCTTT CTCACCTCTG chr12:3068725-3068805 17 2.21e-06 CGTGCTCGGC TGCTCTTT TCTTTCCGCC chr22:22290678-22290758 73 2.77e-06 TTCCACGGAC AGCTTTTT chr19:13928951-13929031 11 4.43e-06 GGAGAGAGCC AGCTCTTT TTCCCGCCAC chr11:118901659-11890173 65 1.09e-05 CTGGTCACGC TGCTCCTT GGACGAAC chr11:2291241-2291321 65 1.26e-05 CACCTTGCTC AGCTTCTT GCTGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:18871174-18871254 2.2e-06 11_[+5]_61 chr11:12768202-12768282 2.2e-06 5_[+5]_67 chr12:3068725-3068805 2.2e-06 16_[+5]_56 chr22:22290678-22290758 2.8e-06 72_[+5] chr19:13928951-13929031 4.4e-06 10_[+5]_62 chr11:118901659-11890173 1.1e-05 64_[+5]_8 chr11:2291241-2291321 1.3e-05 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGCTCTTT width=8 seqs=7 chr8:18871174-18871254 ( 12) TGCTCTTT 1 chr11:12768202-12768282 ( 6) TGCTCTTT 1 chr12:3068725-3068805 ( 17) TGCTCTTT 1 chr22:22290678-22290758 ( 73) AGCTTTTT 1 chr19:13928951-13929031 ( 11) AGCTCTTT 1 chr11:118901659-11890173 ( 65) TGCTCCTT 1 chr11:2291241-2291321 ( 65) AGCTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 3.4e+002 176 -945 -945 218 -945 -945 141 -945 -945 143 -945 -945 -945 -945 -945 299 -945 94 -945 119 -945 -38 -945 251 -945 -945 -945 299 -945 -945 -945 299 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.4e+002 0.428571 0.000000 0.000000 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCTCTTT MEME-5 regular expression -------------------------------------------------------------------------------- [TA]GCT[CT][TC]TT -------------------------------------------------------------------------------- Time 18.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:10015461-10015541 4.77e-01 80 chr19:50831513-50831593 1.24e-01 21_[+3(5.47e-05)]_51 chr17:43045654-43045734 4.55e-01 80 chr2:71503614-71503694 5.62e-01 80 chr6:73972914-73972994 1.49e-03 80 chr19:48076523-48076603 3.35e-03 63_[+2(4.56e-05)]_9 chr16:1813702-1813782 5.23e-04 14_[+3(1.50e-05)]_58 chr1:211500172-211500252 5.07e-01 80 chr7:4721734-4721814 2.18e-01 80 chr16:2228915-2228995 1.05e-01 80 chr1:23670364-23670444 1.33e-02 52_[+2(4.56e-05)]_20 chr3:46853996-46854076 9.86e-02 80 chr2:233498339-233498419 1.44e-01 80 chr11:68778579-68778659 2.77e-02 80 chr6:33588950-33589030 4.86e-02 80 chr12:26111715-26111795 3.87e-02 42_[+1(4.21e-05)]_30 chr4:6202230-6202310 3.55e-02 80 chr8:142183487-142183567 1.20e-02 40_[+1(5.64e-05)]_32 chr17:29886249-29886329 3.20e-02 42_[+3(1.50e-05)]_30 chr17:74236604-74236684 1.42e-01 80 chr6:1524374-1524454 3.17e-01 80 chr11:109963779-10996385 7.04e-02 80 chr7:3340599-3340679 3.05e-01 80 chr7:100806343-100806423 9.89e-02 80 chr7:98099907-98099987 1.62e-02 37_[+1(5.64e-05)]_35 chr2:175199665-175199745 3.62e-02 80 chr17:30813473-30813553 2.33e-03 33_[+2(4.56e-05)]_7_[+3(1.50e-05)]_\ 24 chr15:79237360-79237440 1.32e-01 80 chr7:98030162-98030242 3.66e-01 80 chr7:54842006-54842086 7.57e-02 56_[+2(4.56e-05)]_16 chr11:67407641-67407721 4.48e-03 27_[+2(4.56e-05)]_45 chr17:36884684-36884764 3.38e-03 59_[+3(3.48e-05)]_13 chr19:12904894-12904974 4.97e-02 80 chr8:131455866-131455946 5.50e-02 47_[+3(5.47e-05)]_25 chr2:239112449-239112529 1.65e-01 49_[+1(4.21e-05)]_23 chr4:146654510-146654590 2.69e-02 80 chr22:22290678-22290758 3.35e-08 1_[+4(6.89e-06)]_3_[+2(4.56e-05)]_\ 30_[+3(4.97e-05)]_14_[+5(2.77e-06)] chr7:73703807-73703887 1.75e-01 80 chr19:10024293-10024373 8.86e-01 80 chr11:66326771-66326851 6.97e-02 80 chr19:39997724-39997804 1.93e-01 80 chr3:127347743-127347823 8.92e-01 80 chr3:56836049-56836129 7.06e-02 80 chr19:1568475-1568555 1.20e-02 26_[+2(4.56e-05)]_46 chr3:197687570-197687650 6.96e-02 80 chr3:113666667-113666747 1.90e-01 80 chr10:181016-181096 2.13e-02 80 chr16:3355916-3355996 3.81e-03 48_[+1(4.21e-05)]_24 chr12:107381008-10738108 4.51e-02 80 chr4:177241693-177241773 2.42e-01 80 chrX:153714367-153714447 3.71e-01 80 chr19:54599264-54599344 5.55e-01 80 chr14:93799448-93799528 3.02e-01 80 chr1:3370965-3371045 2.69e-01 54_[+2(4.56e-05)]_18 chr22:38494056-38494136 2.23e-01 80 chr20:42295692-42295772 1.30e-02 80 chr17:53342233-53342313 8.44e-01 80 chr20:36035050-36035130 1.83e-01 80 chr1:153377309-153377389 1.95e-03 15_[+2(4.56e-05)]_57 chr10:6187351-6187431 1.17e-03 18_[+3(2.97e-05)]_29_[+1(5.64e-05)]_\ 17 chr12:122460445-12246052 1.53e-03 80 chr16:2510088-2510168 8.29e-03 80 chr11:61276943-61277023 1.37e-01 46_[+1(4.21e-05)]_26 chr22:19879849-19879929 1.27e-01 80 chr5:172710914-172710994 2.01e-01 80 chr1:6268869-6268949 1.18e-01 80 chr3:196729998-196730078 5.42e-02 40_[+2(4.56e-05)]_32 chr1:43638390-43638470 9.61e-03 80 chr19:3613072-3613152 9.69e-03 42_[+3(1.50e-05)]_30 chr16:2058912-2058992 3.41e-03 37_[+1(4.21e-05)]_35 chr22:38610673-38610753 1.05e-01 80 chr14:24664499-24664579 1.28e-02 25_[+1(4.21e-05)]_47 chr6:33601441-33601521 6.51e-02 51_[+3(4.97e-05)]_21 chr20:58508673-58508753 9.13e-02 59_[+2(4.56e-05)]_13 chrX:152909579-152909659 3.49e-01 80 chr1:247802832-247802912 3.75e-01 80 chr1:244014123-244014203 7.08e-03 22_[+2(4.56e-05)]_50 chr8:22722471-22722551 3.36e-01 80 chr9:93563934-93564014 1.06e-01 15_[+1(4.21e-05)]_57 chr20:62166361-62166441 6.53e-02 80 chr9:94661313-94661393 2.98e-02 16_[+3(1.50e-05)]_56 chr1:23504279-23504359 1.10e-01 49_[+1(4.21e-05)]_23 chr19:55895116-55895196 3.82e-01 80 chr1:9555459-9555539 3.14e-01 80 chr17:38020413-38020493 9.21e-05 13_[+3(6.93e-05)]_59 chr10:69991260-69991340 6.35e-01 80 chr5:72512043-72512123 2.59e-01 80 chr1:181074877-181074957 1.29e-02 43_[+3(4.97e-05)]_29 chr16:67198570-67198650 1.96e-02 10_[+3(4.97e-05)]_62 chr10:69523835-69523915 1.46e-04 24_[+2(4.56e-05)]_34_[+4(1.31e-06)]_\ 6 chr17:27619699-27619779 3.17e-02 46_[+2(6.09e-05)]_26 chr8:1771922-1772002 7.65e-02 80 chrX:118602261-118602341 5.60e-01 80 chr2:47403004-47403084 8.69e-01 80 chr19:47292084-47292164 4.65e-04 5_[+5(1.97e-05)]_67 chr15:66914640-66914720 1.64e-01 26_[+1(4.21e-05)]_[+1(4.21e-05)]_\ [+1(4.21e-05)]_[+1(4.21e-05)]_22 chr11:2291241-2291321 3.17e-03 64_[+5(1.26e-05)]_8 chr10:86016923-86017003 9.90e-06 35_[+4(1.98e-07)]_37 chr12:131356268-13135634 1.03e-01 80 chr21:43374235-43374315 1.04e-01 80 chr1:236849735-236849815 1.03e-02 80 chr11:31837636-31837716 3.02e-02 80 chrX:152875476-152875556 4.09e-01 80 chr16:67281546-67281626 4.65e-02 34_[+2(4.56e-05)]_38 chr9:14315275-14315355 1.77e-03 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59_[+2(4.56e-05)]_13 chr3:186545278-186545358 8.07e-02 80 chr4:5053201-5053281 2.17e-02 80 chr15:67546612-67546692 3.93e-02 40_[+2(6.09e-05)]_32 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************