******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr18:5295226-5295306 1.0000 80 chr17:65989819-65989899 1.0000 80 chr19:35759272-35759352 1.0000 80 chr2:10091611-10091691 1.0000 80 chr4:1242561-1242641 1.0000 80 chr6:69345073-69345153 1.0000 80 chr7:150756600-150756680 1.0000 80 chr1:9884157-9884237 1.0000 80 chr12:121734675-12173475 1.0000 80 chr11:6440333-6440413 1.0000 80 chr9:101558824-101558904 1.0000 80 chr15:89545335-89545415 1.0000 80 chr17:44344229-44344309 1.0000 80 chr1:10754810-10754890 1.0000 80 chr17:42277237-42277317 1.0000 80 chr7:98741753-98741833 1.0000 80 chr17:64298566-64298646 1.0000 80 chr20:10415804-10415884 1.0000 80 chr17:4843240-4843320 1.0000 80 chr9:115096084-115096164 1.0000 80 chr1:40367558-40367638 1.0000 80 chr19:48901985-48902065 1.0000 80 chr9:136933272-136933352 1.0000 80 chr10:124671552-12467163 1.0000 80 chr2:220094104-220094184 1.0000 80 chr6:147788704-147788784 1.0000 80 chr19:49148180-49148260 1.0000 80 chr7:116593782-116593862 1.0000 80 chr19:11071608-11071688 1.0000 80 chr1:63833210-63833290 1.0000 80 chr17:40428432-40428512 1.0000 80 chr8:142402124-142402204 1.0000 80 chr1:159147235-159147315 1.0000 80 chr16:11890905-11890985 1.0000 80 chr9:128845123-128845203 1.0000 80 chr19:38397378-38397458 1.0000 80 chr19:7627876-7627956 1.0000 80 chr8:74659186-74659266 1.0000 80 chr7:123633154-123633234 1.0000 80 chr17:41430102-41430182 1.0000 80 chr11:78128962-78129042 1.0000 80 chr5:88179036-88179116 1.0000 80 chr1:17240603-17240683 1.0000 80 chr16:71501807-71501887 1.0000 80 chr19:4400565-4400645 1.0000 80 chr5:473130-473210 1.0000 80 chr5:174905525-174905605 1.0000 80 chr1:59762308-59762388 1.0000 80 chr9:115819005-115819085 1.0000 80 chr18:903790-903870 1.0000 80 chr19:44293357-44293437 1.0000 80 chr19:51142555-51142635 1.0000 80 chr2:42064242-42064322 1.0000 80 chr4:1242761-1242841 1.0000 80 chr1:35390561-35390641 1.0000 80 chr11:46143057-46143137 1.0000 80 chr19:37663722-37663802 1.0000 80 chr19:2269221-2269301 1.0000 80 chr10:125701730-12570181 1.0000 80 chr5:176560668-176560748 1.0000 80 chr17:46438364-46438444 1.0000 80 chr17:80056234-80056314 1.0000 80 chr15:101874339-10187441 1.0000 80 chr19:49224010-49224090 1.0000 80 chr1:160518934-160519014 1.0000 80 chr8:10847817-10847897 1.0000 80 chr11:925773-925853 1.0000 80 chr20:35012584-35012664 1.0000 80 chr2:24163289-24163369 1.0000 80 chr9:36572783-36572863 1.0000 80 chr19:797891-797971 1.0000 80 chr1:23857713-23857793 1.0000 80 chr7:30711625-30711705 1.0000 80 chr2:181845273-181845353 1.0000 80 chr1:243419189-243419269 1.0000 80 chr7:130790707-130790787 1.0000 80 chr20:36255536-36255616 1.0000 80 chr16:71918049-71918129 1.0000 80 chr3:14639930-14640010 1.0000 80 chr17:35766913-35766993 1.0000 80 chr20:46768458-46768538 1.0000 80 chr9:126872735-126872815 1.0000 80 chr21:30164067-30164147 1.0000 80 chr8:145560354-145560434 1.0000 80 chr19:41036384-41036464 1.0000 80 chr12:55413745-55413825 1.0000 80 chr6:24756964-24757044 1.0000 80 chr6:43215019-43215099 1.0000 80 chr19:1407470-1407550 1.0000 80 chr10:94608262-94608342 1.0000 80 chr19:50321363-50321443 1.0000 80 chr3:57741755-57741835 1.0000 80 chr18:74534478-74534558 1.0000 80 chr12:99038767-99038847 1.0000 80 chr2:128685154-128685234 1.0000 80 chr21:46238021-46238101 1.0000 80 chr11:221027-221107 1.0000 80 chr7:123139764-123139844 1.0000 80 chrX:15901553-15901633 1.0000 80 chr7:143067427-143067507 1.0000 80 chr19:50651542-50651622 1.0000 80 chr15:75287789-75287869 1.0000 80 chr19:39138084-39138164 1.0000 80 chr15:68193172-68193252 1.0000 80 chr1:18748635-18748715 1.0000 80 chr16:88627293-88627373 1.0000 80 chr20:61427773-61427853 1.0000 80 chr12:6717081-6717161 1.0000 80 chr1:119506406-119506486 1.0000 80 chr15:60314157-60314237 1.0000 80 chr19:48866442-48866522 1.0000 80 chr18:5296204-5296284 1.0000 80 chr12:110151349-11015142 1.0000 80 chr1:11610886-11610966 1.0000 80 chr20:39577462-39577542 1.0000 80 chr12:120703561-12070364 1.0000 80 chr7:150756818-150756898 1.0000 80 chr4:55252586-55252666 1.0000 80 chr10:21368144-21368224 1.0000 80 chr3:56528860-56528940 1.0000 80 chr3:170075136-170075216 1.0000 80 chr22:39548609-39548689 1.0000 80 chr8:94886429-94886509 1.0000 80 chr1:198048687-198048767 1.0000 80 chr20:62694384-62694464 1.0000 80 chr18:34850161-34850241 1.0000 80 chr1:234614633-234614713 1.0000 80 chr6:27862242-27862322 1.0000 80 chr9:114659142-114659222 1.0000 80 chr20:30556343-30556423 1.0000 80 chr8:29474754-29474834 1.0000 80 chr12:127388097-12738817 1.0000 80 chr2:26407842-26407922 1.0000 80 chr2:192464305-192464385 1.0000 80 chrX:109561315-109561395 1.0000 80 chrX:3619588-3619668 1.0000 80 chr19:52408294-52408374 1.0000 80 chr19:52290342-52290422 1.0000 80 chr8:61591173-61591253 1.0000 80 chr19:45988723-45988803 1.0000 80 chr14:64830119-64830199 1.0000 80 chr9:110438226-110438306 1.0000 80 chr11:63302432-63302512 1.0000 80 chr14:106267638-10626771 1.0000 80 chr10:22518080-22518160 1.0000 80 chr17:46903284-46903364 1.0000 80 chr1:1822572-1822652 1.0000 80 chrX:1021129-1021209 1.0000 80 chr12:6722807-6722887 1.0000 80 chr15:90325489-90325569 1.0000 80 chr6:147770868-147770948 1.0000 80 chr3:38847418-38847498 1.0000 80 chr1:247531189-247531269 1.0000 80 chr7:74072683-74072763 1.0000 80 chr1:67395817-67395897 1.0000 80 chr15:41099702-41099782 1.0000 80 chr2:47525088-47525168 1.0000 80 chrX:3488827-3488907 1.0000 80 chr12:52345327-52345407 1.0000 80 chr19:54020433-54020513 1.0000 80 chr9:99445945-99446025 1.0000 80 chr19:4342899-4342979 1.0000 80 chr7:30954457-30954537 1.0000 80 chr11:13299109-13299189 1.0000 80 chr3:48699257-48699337 1.0000 80 chr1:247095476-247095556 1.0000 80 chr4:79615509-79615589 1.0000 80 chr1:2457666-2457746 1.0000 80 chr1:226297745-226297825 1.0000 80 chr16:30103255-30103335 1.0000 80 chr19:52490160-52490240 1.0000 80 chr16:23160803-23160883 1.0000 80 chr12:31771260-31771340 1.0000 80 chr22:30163167-30163247 1.0000 80 chr12:2861938-2862018 1.0000 80 chr8:144699749-144699829 1.0000 80 chr19:49947060-49947140 1.0000 80 chr18:43742143-43742223 1.0000 80 chr16:1662284-1662364 1.0000 80 chr11:86648354-86648434 1.0000 80 chr1:155036439-155036519 1.0000 80 chr14:103000339-10300041 1.0000 80 chr1:55359157-55359237 1.0000 80 chr17:73179124-73179204 1.0000 80 chr4:74962373-74962453 1.0000 80 chr3:44482955-44483035 1.0000 80 chr2:152237300-152237380 1.0000 80 chr20:36170892-36170972 1.0000 80 chr17:26335697-26335777 1.0000 80 chr20:62258294-62258374 1.0000 80 chr14:81408118-81408198 1.0000 80 chr6:143381828-143381908 1.0000 80 chr1:205744600-205744680 1.0000 80 chr20:47805031-47805111 1.0000 80 chr12:132090124-13209020 1.0000 80 chr18:3013319-3013399 1.0000 80 chr21:38939236-38939316 1.0000 80 chr2:68694524-68694604 1.0000 80 chr11:97844203-97844283 1.0000 80 chr10:98592568-98592648 1.0000 80 chr20:62289880-62289960 1.0000 80 chr6:31830881-31830961 1.0000 80 chr2:205219399-205219479 1.0000 80 chr3:101362796-101362876 1.0000 80 chr5:176264780-176264860 1.0000 80 chr3:156338125-156338205 1.0000 80 chr16:12704977-12705057 1.0000 80 chr6:38607546-38607626 1.0000 80 chr15:45876402-45876482 1.0000 80 chr6:134612679-134612759 1.0000 80 chr1:21113847-21113927 1.0000 80 chr6:134612476-134612556 1.0000 80 chr6:158176320-158176400 1.0000 80 chr1:31632828-31632908 1.0000 80 chr11:70496554-70496634 1.0000 80 chr9:126692409-126692489 1.0000 80 chr8:41676492-41676572 1.0000 80 chr19:33462990-33463070 1.0000 80 chr13:109335294-10933537 1.0000 80 chr2:72984381-72984461 1.0000 80 chr15:77712556-77712636 1.0000 80 chr6:164758820-164758900 1.0000 80 chr20:39890795-39890875 1.0000 80 chr9:136933478-136933558 1.0000 80 chr12:33099585-33099665 1.0000 80 chr1:223920407-223920487 1.0000 80 chr8:101514068-101514148 1.0000 80 chr9:99183097-99183177 1.0000 80 chr6:111140837-111140917 1.0000 80 chr1:223079693-223079773 1.0000 80 chr7:156931430-156931510 1.0000 80 chr12:131847294-13184737 1.0000 80 chr15:68316157-68316237 1.0000 80 chr4:6717841-6717921 1.0000 80 chr11:73309343-73309423 1.0000 80 chr16:1344206-1344286 1.0000 80 chr16:577577-577657 1.0000 80 chr15:76135525-76135605 1.0000 80 chr17:77007707-77007787 1.0000 80 chr6:158425155-158425235 1.0000 80 chr16:70488260-70488340 1.0000 80 chr14:58765068-58765148 1.0000 80 chr15:40675060-40675140 1.0000 80 chr19:46431104-46431184 1.0000 80 chr1:212651644-212651724 1.0000 80 chr16:26981076-26981156 1.0000 80 chr5:175223992-175224072 1.0000 80 chr15:32163000-32163080 1.0000 80 chr9:102064160-102064240 1.0000 80 chr19:2456962-2457042 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_E2F5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.181 C 0.32 G 0.312 T 0.187 Background letter frequencies (from file dataset with add-one prior applied): A 0.181 C 0.32 G 0.312 T 0.187 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAGATGGA MEME-1 width = 8 sites = 43 llr = 439 E-value = 6.3e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa2a:::8 pos.-specific C :::::::1 probability G ::8::aa: matrix T ::::a::: bits 2.5 * * 2.2 ** ** 2.0 ** ** 1.7 ** ** Relative 1.5 ** ***** Entropy 1.2 ** ***** (14.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGATGGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:1344206-1344286 40 6.10e-06 agccccattc aagatgga gttgctctgg chr15:68316157-68316237 36 6.10e-06 ggctagaagc aagatgga gtcagccatg chr12:131847294-13184737 31 6.10e-06 gtccttgttc aagatgga gtcactctgg chr1:223920407-223920487 14 6.10e-06 gctcttattc aagatgga gttgctctag chr13:109335294-10933537 20 6.10e-06 gtctttttct aagatgga gccactaatg chr15:45876402-45876482 26 6.10e-06 agtcctattc aagatgga gttgctctgg chr2:205219399-205219479 15 6.10e-06 tgtgaaatgt aagatgga gtctttttct chr12:132090124-13209020 24 6.10e-06 gcccctgttc aagatgga gtcattctgg chr3:44482955-44483035 31 6.10e-06 ttccctattc aagatgga gtcactctgg chr4:74962373-74962453 34 6.10e-06 gcccctattc aagatgga gttgctctgg chr14:103000339-10300041 7 6.10e-06 ctgctc aagatgga gttgctctgg chr18:43742143-43742223 24 6.10e-06 gcccttattc aagatgga gtcgctctgg chr4:79615509-79615589 24 6.10e-06 ggttaaaggt aagatgga gttggttagg chr6:147770868-147770948 50 6.10e-06 gcccccattc aagatgga gacattctgg chr17:46903284-46903364 21 6.10e-06 gcccctattc aagatgga gtcactctgg chr9:110438226-110438306 22 6.10e-06 gcccctattc aagatgga gtcactctgg chr12:127388097-12738817 38 6.10e-06 gttcctgttt aagatgga gttgctcagg chr8:94886429-94886509 13 6.10e-06 ccccctattc aagatgga gtcactctag chr20:39577462-39577542 26 6.10e-06 gccgctattc aagatgga gttgctctgg chr15:68193172-68193252 26 6.10e-06 ggcactattc aagatgga gttgctctgg chrX:15901553-15901633 21 6.10e-06 gcccctattc aagatgga gttgctctgg chr6:24756964-24757044 48 6.10e-06 ggccctattc aagatgga gttgctctgg chr20:46768458-46768538 23 6.10e-06 gcccctattc aagatgga gttgctctgg chr7:123633154-123633234 26 6.10e-06 agccctattc aagatgga gtcactctgg chr15:89545335-89545415 6 6.10e-06 tttct aagatgga gttagttggg chr2:72984381-72984461 25 9.63e-06 taacaataac aaaatgga gtcacttatg chr6:134612476-134612556 13 9.63e-06 actaaaaatc aaaatgga gtcacctatg chr11:63302432-63302512 24 9.63e-06 TAAATATTTC AAAATGGA GTCACTTACG chr17:41430102-41430182 20 9.63e-06 gccctccctc aaaatgga gtcgctttgg chr6:111140837-111140917 11 1.32e-05 tgggggcatc aagataga aatAACtgtc chr20:35012584-35012664 36 1.32e-05 CGTGGTGCTG AAGATAGA GAGGGTAGAG chr15:60314157-60314237 12 1.95e-05 gcccctactc aagatggt gtcgctccag chr8:41676492-41676572 17 3.39e-05 gtaacaaagc aatatgga gtaactcaag chr20:36170892-36170972 37 3.39e-05 GTTTCACTTC AAGATGGC GTCACTCTTG chr2:68694524-68694604 44 5.00e-05 GGCGTCCTCC AAGATGGG AGGGAGGTGA chr1:247531189-247531269 56 5.00e-05 ctccatcttg aagatggg ctgggtaaaa chr3:57741755-57741835 60 5.36e-05 GCCCTTAACC AAAATGGT CGTTAAGGTT chr19:52490160-52490240 31 6.58e-05 CCTACTCTGT AAAATGGC CGCGCCCATA chr10:94608262-94608342 26 6.58e-05 GCTTCCAGCC AAAATGGC GGAGAACAGC chr3:156338125-156338205 4 7.41e-05 tat atgatgga ataagtactg chr14:106267638-10626771 24 7.41e-05 GCTACACAGA AAAATGAA AGCAAAACCA chr19:50321363-50321443 69 9.07e-05 GGGGCGAAGG AGGATGGA GCTA chr9:99183097-99183177 69 9.42e-05 actccatttt aaaaagga gctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:1344206-1344286 6.1e-06 39_[+1]_33 chr15:68316157-68316237 6.1e-06 35_[+1]_37 chr12:131847294-13184737 6.1e-06 30_[+1]_42 chr1:223920407-223920487 6.1e-06 13_[+1]_59 chr13:109335294-10933537 6.1e-06 19_[+1]_53 chr15:45876402-45876482 6.1e-06 25_[+1]_47 chr2:205219399-205219479 6.1e-06 14_[+1]_58 chr12:132090124-13209020 6.1e-06 23_[+1]_49 chr3:44482955-44483035 6.1e-06 30_[+1]_42 chr4:74962373-74962453 6.1e-06 33_[+1]_39 chr14:103000339-10300041 6.1e-06 6_[+1]_66 chr18:43742143-43742223 6.1e-06 23_[+1]_49 chr4:79615509-79615589 6.1e-06 23_[+1]_49 chr6:147770868-147770948 6.1e-06 49_[+1]_23 chr17:46903284-46903364 6.1e-06 20_[+1]_52 chr9:110438226-110438306 6.1e-06 21_[+1]_51 chr12:127388097-12738817 6.1e-06 37_[+1]_35 chr8:94886429-94886509 6.1e-06 12_[+1]_60 chr20:39577462-39577542 6.1e-06 25_[+1]_47 chr15:68193172-68193252 6.1e-06 25_[+1]_47 chrX:15901553-15901633 6.1e-06 20_[+1]_52 chr6:24756964-24757044 6.1e-06 47_[+1]_25 chr20:46768458-46768538 6.1e-06 22_[+1]_50 chr7:123633154-123633234 6.1e-06 25_[+1]_47 chr15:89545335-89545415 6.1e-06 5_[+1]_67 chr2:72984381-72984461 9.6e-06 24_[+1]_48 chr6:134612476-134612556 9.6e-06 12_[+1]_60 chr11:63302432-63302512 9.6e-06 23_[+1]_49 chr17:41430102-41430182 9.6e-06 19_[+1]_53 chr6:111140837-111140917 1.3e-05 10_[+1]_62 chr20:35012584-35012664 1.3e-05 35_[+1]_37 chr15:60314157-60314237 1.9e-05 11_[+1]_61 chr8:41676492-41676572 3.4e-05 16_[+1]_56 chr20:36170892-36170972 3.4e-05 36_[+1]_36 chr2:68694524-68694604 5e-05 43_[+1]_29 chr1:247531189-247531269 5e-05 55_[+1]_17 chr3:57741755-57741835 5.4e-05 59_[+1]_13 chr19:52490160-52490240 6.6e-05 30_[+1]_42 chr10:94608262-94608342 6.6e-05 25_[+1]_47 chr3:156338125-156338205 7.4e-05 3_[+1]_69 chr14:106267638-10626771 7.4e-05 23_[+1]_49 chr19:50321363-50321443 9.1e-05 68_[+1]_4 chr9:99183097-99183177 9.4e-05 68_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGATGGA width=8 seqs=43 chr16:1344206-1344286 ( 40) AAGATGGA 1 chr15:68316157-68316237 ( 36) AAGATGGA 1 chr12:131847294-13184737 ( 31) AAGATGGA 1 chr1:223920407-223920487 ( 14) AAGATGGA 1 chr13:109335294-10933537 ( 20) AAGATGGA 1 chr15:45876402-45876482 ( 26) AAGATGGA 1 chr2:205219399-205219479 ( 15) AAGATGGA 1 chr12:132090124-13209020 ( 24) AAGATGGA 1 chr3:44482955-44483035 ( 31) AAGATGGA 1 chr4:74962373-74962453 ( 34) AAGATGGA 1 chr14:103000339-10300041 ( 7) AAGATGGA 1 chr18:43742143-43742223 ( 24) AAGATGGA 1 chr4:79615509-79615589 ( 24) AAGATGGA 1 chr6:147770868-147770948 ( 50) AAGATGGA 1 chr17:46903284-46903364 ( 21) AAGATGGA 1 chr9:110438226-110438306 ( 22) AAGATGGA 1 chr12:127388097-12738817 ( 38) AAGATGGA 1 chr8:94886429-94886509 ( 13) AAGATGGA 1 chr20:39577462-39577542 ( 26) AAGATGGA 1 chr15:68193172-68193252 ( 26) AAGATGGA 1 chrX:15901553-15901633 ( 21) AAGATGGA 1 chr6:24756964-24757044 ( 48) AAGATGGA 1 chr20:46768458-46768538 ( 23) AAGATGGA 1 chr7:123633154-123633234 ( 26) AAGATGGA 1 chr15:89545335-89545415 ( 6) AAGATGGA 1 chr2:72984381-72984461 ( 25) AAAATGGA 1 chr6:134612476-134612556 ( 13) AAAATGGA 1 chr11:63302432-63302512 ( 24) AAAATGGA 1 chr17:41430102-41430182 ( 20) AAAATGGA 1 chr6:111140837-111140917 ( 11) AAGATAGA 1 chr20:35012584-35012664 ( 36) AAGATAGA 1 chr15:60314157-60314237 ( 12) AAGATGGT 1 chr8:41676492-41676572 ( 17) AATATGGA 1 chr20:36170892-36170972 ( 37) AAGATGGC 1 chr2:68694524-68694604 ( 44) AAGATGGG 1 chr1:247531189-247531269 ( 56) AAGATGGG 1 chr3:57741755-57741835 ( 60) AAAATGGT 1 chr19:52490160-52490240 ( 31) AAAATGGC 1 chr10:94608262-94608342 ( 26) AAAATGGC 1 chr3:156338125-156338205 ( 4) ATGATGGA 1 chr14:106267638-10626771 ( 24) AAAATGAA 1 chr19:50321363-50321443 ( 69) AGGATGGA 1 chr9:99183097-99183177 ( 69) AAAAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.05698 E= 6.3e-046 246 -1207 -1207 -1207 240 -1207 -374 -300 21 -1207 130 -300 246 -1207 -1207 -1207 -296 -1207 -1207 239 -196 -1207 161 -1207 -296 -1207 164 -1207 221 -219 -275 -201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 6.3e-046 1.000000 0.000000 0.000000 0.000000 0.953488 0.000000 0.023256 0.023256 0.209302 0.000000 0.767442 0.023256 1.000000 0.000000 0.000000 0.000000 0.023256 0.000000 0.000000 0.976744 0.046512 0.000000 0.953488 0.000000 0.023256 0.000000 0.976744 0.000000 0.837209 0.069767 0.046512 0.046512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 regular expression -------------------------------------------------------------------------------- AA[GA]ATGGA -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCATYTT MEME-2 width = 8 sites = 55 llr = 508 E-value = 1.2e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 18a::5:: probability G 1::::1:: matrix T 72::a3aa bits 2.5 * 2.2 ** ** 2.0 ** ** 1.7 *** ** Relative 1.5 *** ** Entropy 1.2 *** ** (13.3 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCATCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:212651644-212651724 40 4.24e-06 cacgagtgac tccatttt ggcttggtct chr9:99183097-99183177 61 4.24e-06 ccagagcaac tccatttt aaaaaggagc chr2:152237300-152237380 44 4.24e-06 catgagtgac tccatttt ggtttggtct chr1:55359157-55359237 41 4.24e-06 cattagtgac tccatttt gatgctgaca chr9:99445945-99446025 34 4.24e-06 cacaagtgac tccatttt gaatttgaca chr22:39548609-39548689 14 4.24e-06 cCGCCGACGT TCCATTTT TGAACCTGCG chr2:128685154-128685234 25 4.24e-06 catgagtgac tccatttt ggtttggtct chr9:102064160-102064240 61 1.15e-05 ccagagggac tccatctt gaacaggggc chr16:26981076-26981156 16 1.15e-05 ccagagcgac tccatctt aaataggggc chr6:158425155-158425235 53 1.15e-05 ccagagcgac tccatctt gaataggggc chr1:223079693-223079773 43 1.15e-05 ccagagcaac tccatctt aaataggggc chr6:111140837-111140917 50 1.15e-05 ccacagtgac tccatctt gaatagggta chr8:101514068-101514148 58 1.15e-05 catgagtgac tccatctt ggtttggtct chr6:164758820-164758900 53 1.15e-05 ccagagcgac tccatctt gaataggggc chr16:12704977-12705057 55 1.15e-05 ccagagcaac tccatctt gggtaggagc chr3:101362796-101362876 65 1.15e-05 ccagagtgac tccatctt gaataggg chrX:3488827-3488907 51 1.15e-05 ccacagcaac tccatctt gaataggggc chr2:47525088-47525168 37 1.15e-05 ccagagtgac tccatctt aagtaggggc chr1:247531189-247531269 47 1.15e-05 caagagggac tccatctt gaagatgggc chr15:90325489-90325569 58 1.15e-05 ccagagcgat tccatctt gaataggggc chr14:64830119-64830199 51 1.15e-05 ccagagcaac tccatctt gaataggggc chrX:3619588-3619668 57 1.15e-05 ccagagcaac tccatctt gaagaggagc chr8:29474754-29474834 29 1.15e-05 ccagagcaac tccatctt gaatagggac chr1:18748635-18748715 66 1.15e-05 caagagtgac tccatctt gaataca chr7:143067427-143067507 54 1.15e-05 ccagagcaac tccatctt gaataggagc chr7:123139764-123139844 70 1.15e-05 ccagagcaac tccatctt gaa chr21:30164067-30164147 37 1.15e-05 ccagagtgac tccatctt gaatagggga chr10:125701730-12570181 46 1.15e-05 ccacagtgac tccatctt gaacagggac chr16:1344206-1344286 18 1.40e-05 aggtctcagc ttcatttt acgcagcccc chr6:147788704-147788784 32 1.40e-05 GAGTGACTCA TTCATTTT CTCTCAGCTA chr11:97844203-97844283 55 2.53e-05 cctgagttac tccatgtt gtttatctct chr19:52290342-52290422 57 2.53e-05 ccagagcaac tccatgtt gaatagtagc chr1:198048687-198048767 39 2.53e-05 cctaagttac tccatgtt gtttatcttt chr19:37663722-37663802 69 3.23e-05 CGCGTGGGCC GCCATTTT GAAA chr4:74962373-74962453 11 5.17e-05 aaacctcagc cccatttt gcctagcccc chrX:1021129-1021209 73 5.17e-05 gtggcccgcc gccatctt chr19:52408294-52408374 58 5.17e-05 TCTGGGCGCG GCCATCTT GGTAGATCTG chr9:115819005-115819085 42 5.17e-05 CACGGGCGCG GCCATCTT GGCAAACACT chr20:10415804-10415884 27 5.17e-05 GTGTTTCGCT GCCATCTT AAATCCTGGC chr11:6440333-6440413 44 5.17e-05 GGGGAGGGGC GCCATCTT GGGGCGGGCG chr12:33099585-33099665 41 7.23e-05 ccagagtgac tccatatt gaataggggc chr12:131847294-13184737 8 8.78e-05 tcttggc ctcatttt actcagtcct chr15:45876402-45876482 4 8.78e-05 agc ctcatttt acccagtcct chr6:147770868-147770948 27 8.78e-05 aagtctcagc ctcatttt acccagcccc chr12:127388097-12738817 15 8.78e-05 aggtctcagc ctcatttt acccagttcc chr15:68193172-68193252 2 8.78e-05 c ctcatttt tatctaggca chr7:123633154-123633234 4 8.78e-05 agc ctcatttt acccagccct chr17:77007707-77007787 45 1.18e-04 ccagagcaac accatctt gaataagggc chr20:62289880-62289960 72 1.18e-04 TTGGCCGCGC TGCATTTT G chr14:81408118-81408198 30 1.37e-04 GGAGTTGTAG TCCATCTC GGCCTCATGA chr6:43215019-43215099 8 1.37e-04 GCGAGAC TCCATCTC CCGGCGTGCC chr16:23160803-23160883 44 1.53e-04 CGCCTCGGCC GCCATGTT CACTGTGGGA chr19:52490160-52490240 68 1.53e-04 CCTGACGGCA GCCATGTT TGAAA chr7:30711625-30711705 34 1.82e-04 ACAGCACAAC TCCATTCT TCATCCCTGC chr1:23857713-23857793 24 2.48e-04 CCTCtttttt ttcttctt tttttttttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:212651644-212651724 4.2e-06 39_[+2]_33 chr9:99183097-99183177 4.2e-06 60_[+2]_12 chr2:152237300-152237380 4.2e-06 43_[+2]_29 chr1:55359157-55359237 4.2e-06 40_[+2]_32 chr9:99445945-99446025 4.2e-06 33_[+2]_39 chr22:39548609-39548689 4.2e-06 13_[+2]_59 chr2:128685154-128685234 4.2e-06 24_[+2]_48 chr9:102064160-102064240 1.1e-05 60_[+2]_12 chr16:26981076-26981156 1.1e-05 15_[+2]_57 chr6:158425155-158425235 1.1e-05 52_[+2]_20 chr1:223079693-223079773 1.1e-05 42_[+2]_30 chr6:111140837-111140917 1.1e-05 49_[+2]_23 chr8:101514068-101514148 1.1e-05 57_[+2]_15 chr6:164758820-164758900 1.1e-05 52_[+2]_20 chr16:12704977-12705057 1.1e-05 54_[+2]_18 chr3:101362796-101362876 1.1e-05 64_[+2]_8 chrX:3488827-3488907 1.1e-05 50_[+2]_22 chr2:47525088-47525168 1.1e-05 36_[+2]_36 chr1:247531189-247531269 1.1e-05 46_[+2]_26 chr15:90325489-90325569 1.1e-05 57_[+2]_15 chr14:64830119-64830199 1.1e-05 50_[+2]_22 chrX:3619588-3619668 1.1e-05 56_[+2]_16 chr8:29474754-29474834 1.1e-05 28_[+2]_44 chr1:18748635-18748715 1.1e-05 65_[+2]_7 chr7:143067427-143067507 1.1e-05 53_[+2]_19 chr7:123139764-123139844 1.1e-05 69_[+2]_3 chr21:30164067-30164147 1.1e-05 36_[+2]_36 chr10:125701730-12570181 1.1e-05 45_[+2]_27 chr16:1344206-1344286 1.4e-05 17_[+2]_55 chr6:147788704-147788784 1.4e-05 31_[+2]_41 chr11:97844203-97844283 2.5e-05 54_[+2]_18 chr19:52290342-52290422 2.5e-05 56_[+2]_16 chr1:198048687-198048767 2.5e-05 38_[+2]_34 chr19:37663722-37663802 3.2e-05 68_[+2]_4 chr4:74962373-74962453 5.2e-05 10_[+2]_62 chrX:1021129-1021209 5.2e-05 72_[+2] chr19:52408294-52408374 5.2e-05 57_[+2]_15 chr9:115819005-115819085 5.2e-05 41_[+2]_31 chr20:10415804-10415884 5.2e-05 26_[+2]_46 chr11:6440333-6440413 5.2e-05 43_[+2]_29 chr12:33099585-33099665 7.2e-05 40_[+2]_32 chr12:131847294-13184737 8.8e-05 7_[+2]_65 chr15:45876402-45876482 8.8e-05 3_[+2]_69 chr6:147770868-147770948 8.8e-05 26_[+2]_46 chr12:127388097-12738817 8.8e-05 14_[+2]_58 chr15:68193172-68193252 8.8e-05 1_[+2]_71 chr7:123633154-123633234 8.8e-05 3_[+2]_69 chr17:77007707-77007787 0.00012 44_[+2]_28 chr20:62289880-62289960 0.00012 71_[+2]_1 chr14:81408118-81408198 0.00014 29_[+2]_43 chr6:43215019-43215099 0.00014 7_[+2]_65 chr16:23160803-23160883 0.00015 43_[+2]_29 chr19:52490160-52490240 0.00015 67_[+2]_5 chr7:30711625-30711705 0.00018 33_[+2]_39 chr1:23857713-23857793 0.00025 23_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCATYTT width=8 seqs=55 chr1:212651644-212651724 ( 40) TCCATTTT 1 chr9:99183097-99183177 ( 61) TCCATTTT 1 chr2:152237300-152237380 ( 44) TCCATTTT 1 chr1:55359157-55359237 ( 41) TCCATTTT 1 chr9:99445945-99446025 ( 34) TCCATTTT 1 chr22:39548609-39548689 ( 14) TCCATTTT 1 chr2:128685154-128685234 ( 25) TCCATTTT 1 chr9:102064160-102064240 ( 61) TCCATCTT 1 chr16:26981076-26981156 ( 16) TCCATCTT 1 chr6:158425155-158425235 ( 53) TCCATCTT 1 chr1:223079693-223079773 ( 43) TCCATCTT 1 chr6:111140837-111140917 ( 50) TCCATCTT 1 chr8:101514068-101514148 ( 58) TCCATCTT 1 chr6:164758820-164758900 ( 53) TCCATCTT 1 chr16:12704977-12705057 ( 55) TCCATCTT 1 chr3:101362796-101362876 ( 65) TCCATCTT 1 chrX:3488827-3488907 ( 51) TCCATCTT 1 chr2:47525088-47525168 ( 37) TCCATCTT 1 chr1:247531189-247531269 ( 47) TCCATCTT 1 chr15:90325489-90325569 ( 58) TCCATCTT 1 chr14:64830119-64830199 ( 51) TCCATCTT 1 chrX:3619588-3619668 ( 57) TCCATCTT 1 chr8:29474754-29474834 ( 29) TCCATCTT 1 chr1:18748635-18748715 ( 66) TCCATCTT 1 chr7:143067427-143067507 ( 54) TCCATCTT 1 chr7:123139764-123139844 ( 70) TCCATCTT 1 chr21:30164067-30164147 ( 37) TCCATCTT 1 chr10:125701730-12570181 ( 46) TCCATCTT 1 chr16:1344206-1344286 ( 18) TTCATTTT 1 chr6:147788704-147788784 ( 32) TTCATTTT 1 chr11:97844203-97844283 ( 55) TCCATGTT 1 chr19:52290342-52290422 ( 57) TCCATGTT 1 chr1:198048687-198048767 ( 39) TCCATGTT 1 chr19:37663722-37663802 ( 69) GCCATTTT 1 chr4:74962373-74962453 ( 11) CCCATTTT 1 chrX:1021129-1021209 ( 73) GCCATCTT 1 chr19:52408294-52408374 ( 58) GCCATCTT 1 chr9:115819005-115819085 ( 42) GCCATCTT 1 chr20:10415804-10415884 ( 27) GCCATCTT 1 chr11:6440333-6440413 ( 44) GCCATCTT 1 chr12:33099585-33099665 ( 41) TCCATATT 1 chr12:131847294-13184737 ( 8) CTCATTTT 1 chr15:45876402-45876482 ( 4) CTCATTTT 1 chr6:147770868-147770948 ( 27) CTCATTTT 1 chr12:127388097-12738817 ( 15) CTCATTTT 1 chr15:68193172-68193252 ( 2) CTCATTTT 1 chr7:123633154-123633234 ( 4) CTCATTTT 1 chr17:77007707-77007787 ( 45) ACCATCTT 1 chr20:62289880-62289960 ( 72) TGCATTTT 1 chr14:81408118-81408198 ( 30) TCCATCTC 1 chr6:43215019-43215099 ( 8) TCCATCTC 1 chr16:23160803-23160883 ( 44) GCCATGTT 1 chr19:52490160-52490240 ( 68) GCCATGTT 1 chr7:30711625-30711705 ( 34) TCCATTCT 1 chr1:23857713-23857793 ( 24) TTCTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95894 E= 1.2e-044 -331 -133 -110 192 -1243 136 -410 -19 -1243 165 -1243 -1243 244 -1243 -1243 -336 -1243 -1243 -1243 242 -331 77 -178 89 -1243 -413 -1243 239 -1243 -313 -1243 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.2e-044 0.018182 0.127273 0.145455 0.709091 0.000000 0.818182 0.018182 0.163636 0.000000 1.000000 0.000000 0.000000 0.981818 0.000000 0.000000 0.018182 0.000000 0.000000 0.000000 1.000000 0.018182 0.545455 0.090909 0.345455 0.000000 0.018182 0.000000 0.981818 0.000000 0.036364 0.000000 0.963636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 regular expression -------------------------------------------------------------------------------- TCCAT[CT]TT -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCGC MEME-3 width = 8 sites = 94 llr = 675 E-value = 7.9e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C :72a:a19 probability G a28:a:91 matrix T :::::::: bits 2.5 2.2 2.0 1.7 ** Relative 1.5 * *** Entropy 1.2 * ***** (10.4 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:2456962-2457042 66 9.94e-05 CGACCGCCGG GCGCGCGC GGGGCAC chr15:32163000-32163080 40 9.94e-05 GCGCGGACGT gcgcgcgc cgcgcctgtg chr15:77712556-77712636 53 9.94e-05 CCGTGAGCAC GCGCGCGC TCACGGGCCC chr9:126692409-126692489 2 9.94e-05 g gcgcgcgc cgccccctcc chr1:155036439-155036519 29 9.94e-05 CCCGGGCTTT GCGCGCGC CCGCCACCCG chr12:52345327-52345407 3 9.94e-05 cc gcgcgcgc cccggccccg chr1:67395817-67395897 5 9.94e-05 ccgc gcgcgcgc cccTGCTCCG chr7:74072683-74072763 2 9.94e-05 C GCGCGCGC CTCAGTGCGC chr1:1822572-1822652 9 9.94e-05 CGCGCGTC GCGCGCGC TCGCCAGGCC chr10:22518080-22518160 55 9.94e-05 GGAGCGGCGG GCGCGCGC GGCAAACGGG chr2:26407842-26407922 5 9.94e-05 cgcc gcgcgcgc ctctgcctgc chr22:39548609-39548689 60 9.94e-05 CAGCGAGCGA GCGCGCGC AAGGAGGGGG chr3:170075136-170075216 22 9.94e-05 GAAGCGCCGG GCGCGCGC CTGGGGGGAG chr18:5296204-5296284 24 9.94e-05 GCCTgcgcac gcgcgcgc acgcgcgcgg chr20:61427773-61427853 15 9.94e-05 ACCCGGCGGA GCGCGCGC CCGCCCCCGA chr15:75287789-75287869 70 9.94e-05 GGCGGCGCGG GCGCGCGC AGA chr21:46238021-46238101 60 9.94e-05 ggggcgtcgg gcgcgcgc aggccgggcc chr12:99038767-99038847 48 9.94e-05 CGAAGGGGTC GCGCGCGC CACGTCGGGC chr7:130790707-130790787 10 9.94e-05 cggcggcgg gcgcgcgc gggggcggca chr19:797891-797971 69 9.94e-05 GCCATCGGGG GCGCGCGC CTTT chr9:36572783-36572863 37 9.94e-05 ATccggcgcc gcgcgcgc ccccgccgcg chr2:24163289-24163369 2 9.94e-05 c gcgcgcgc TCCTCGGGTC chr5:176560668-176560748 8 9.94e-05 AAGGGGT GCGCGCGC ACTcggggcc chr19:2269221-2269301 30 9.94e-05 ACGGCTCGGG GCGCGCGC AGCGCGTACC chr5:473130-473210 39 9.94e-05 cggggcggcg gcgcgcgc gAGGCCGCTG chr19:4400565-4400645 14 9.94e-05 GCCGgccccc gcgcgcgc ccccggcccc chr1:17240603-17240683 44 9.94e-05 GTggccgggg gcgcgcgc gtgcgcgggg chr5:88179036-88179116 61 9.94e-05 ccgcgcattc gcgcgcgc CGAGGCCGCT chr8:74659186-74659266 52 9.94e-05 cccggccggc gcgcgcgc ccggcaccgg chr16:11890905-11890985 3 9.94e-05 cg gcgcgcgc ggggggggcg chr8:142402124-142402204 7 9.94e-05 GCGAGG GCGCGCGC GTCCCGAGCC chr17:40428432-40428512 6 9.94e-05 cgggg gcgcgcgc gccgcTCACG chr19:11071608-11071688 33 9.94e-05 gccggcgagc gcgcgcgc agcgggggcg chr7:116593782-116593862 47 9.94e-05 ccgcggccag gcgcgcgc tcggggacgc chr19:48901985-48902065 27 9.94e-05 AAGACGACTC GCGCGCGC CCGCCGTCGC chr1:40367558-40367638 51 9.94e-05 ccccccccgc gcgcgcgc ccTCCCTCGC chr9:115096084-115096164 60 9.94e-05 cccggcgcgc gcgcgcgc ccccAGCCTC chr17:4843240-4843320 54 9.94e-05 CAGAGCGAGG GCGCGCGC ACGCCCCTCC chr17:64298566-64298646 33 9.94e-05 ccgcaccccc gcgcgcgc ccggcccgcg chr17:42277237-42277317 28 9.94e-05 GAGCGTGCGC GCGCGCGC CCCTCTCCCC chr17:44344229-44344309 71 9.94e-05 gcccggccgc gcgcgcgc gc chr11:6440333-6440413 18 9.94e-05 agcggcggag gcgcgcgc AAGGGGAGGG chr1:9884157-9884237 21 9.94e-05 agcggaggga gcgcgcgc ggcggACCCG chr6:69345073-69345153 10 9.94e-05 acccgggac gcgcgcgc acacgagcac chr4:1242561-1242641 46 9.94e-05 cggcccgcgg gcgcgcgc tcggtccgcc chr19:35759272-35759352 61 9.94e-05 ccccgggctc gcgcgcgc ccgcccgccc chr1:21113847-21113927 27 1.96e-04 GGGTGCGAgg gggcgcgc ggggacgggc chr8:144699749-144699829 24 1.96e-04 GGAGTCCCGG GGGCGCGC AGCGTCCCGG chr8:145560354-145560434 68 1.96e-04 GCCAGCGCCC GGGCGCGC TCAAC chr17:35766913-35766993 56 1.96e-04 cgccgcccgg gggcgcgc ACGCAAAGCC chr1:63833210-63833290 19 1.96e-04 CTCCCGCACC GGGCGCGC GGGTGGTGCG chr7:150756600-150756680 70 1.96e-04 GTgcgccggg gggcgcgc acg chr17:65989819-65989899 67 1.96e-04 gcgggccagc gggcgcgc gTGCGG chr16:1662284-1662364 39 2.98e-04 cgccccgcgc gcccgcgc accccggccc chr1:2457666-2457746 42 2.98e-04 GTCGCCCCGA GCCCGCGC ATCAGCGACC chr9:114659142-114659222 23 2.98e-04 CGGCGGAGGT GCCCGCGC GCAGGGTCTG chr12:120703561-12070364 1 2.98e-04 . gcccgcgc ccgccgcgcg chr18:74534478-74534558 3 2.98e-04 gt gcccgcgc gtgcgcgccc chr9:101558824-101558904 45 2.98e-04 ccggccaccc gcccgcgc cgcgcgccTA chr4:6717841-6717921 45 3.54e-04 gcgtgagcgt gagcgcgc gGAGGCCGGA chr17:73179124-73179204 18 3.54e-04 CGCCTCGCGG GAGCGCGC AACGCTTACA chr1:234614633-234614713 46 3.54e-04 CCGCCTCCGG GAGCGCGC CTGCGCCCCC chr19:1407470-1407550 67 3.54e-04 CCCCGTGCGG GAgcgcgc ccgggc chr16:71918049-71918129 18 3.54e-04 CGGGCGGCGG GAGCGCGC GGCTCGCGCA chr16:30103255-30103335 35 5.14e-04 CAGCGCTGAG GCGCGCCC GAAGGAGCCG chr1:226297745-226297825 44 5.14e-04 gtggccgggc gtgcgcgc gACCACCCGG chr20:62694384-62694464 28 5.14e-04 CCAGGAGGCT GTGCGCGC CGCGTGGCGC chr17:80056234-80056314 29 5.14e-04 GGTGATGCTC GTGCGCGC CGCCGCCCGA chr11:46143057-46143137 54 5.14e-04 ccgccgccgt gcgcgccc ccgccgctcc chr2:220094104-220094184 22 5.14e-04 CATTCCGGCT gcgcgccc ccgccccgcc chr7:98741753-98741833 21 5.14e-04 gcccggccct gcgcgccc ccgcgcctgc chr12:121734675-12173475 12 5.14e-04 accgccccct gcgcgccc ccgccggctc chr11:73309343-73309423 24 6.14e-04 GGTGCAGAGG GGCCGCGC CCTCTCCGGT chr7:156931430-156931510 5 6.14e-04 GCGG GGCCGCGC ACGCTAGCGG chr20:62289880-62289960 64 6.14e-04 TCGGCGGATT GGCCGCGC TGCATTTTG chr6:143381828-143381908 64 6.14e-04 GGGCGCTCGC GGCCGCGC CAGTCCCCG chr20:62258294-62258374 19 6.14e-04 gcTTACCTGG GGCCGCGC CGGGCCTGCT chr19:49947060-49947140 49 6.14e-04 GTTTGAGAAG GGCCGCGC ACTCCGAGGG chr19:37663722-37663802 35 6.14e-04 CAGAGAACAT GGCCGCGC CCTTATGGTG chr18:903790-903870 30 6.14e-04 CAGCTCCGCA GGCCGCGC TCCGGAGGCA chr3:38847418-38847498 17 7.69e-04 GGACGAAAGT GCGTGCGC TATCCATGGT chr11:925773-925853 44 7.69e-04 Tcgctcgcgt gcgtgcgc gtgcgtgctg chr19:38397378-38397458 54 7.69e-04 CGACGACCGC GCGTGCGC GGGCGTGCAT chr18:5295226-5295306 73 7.69e-04 ggcgggggcg gcgcgcgg chr18:3013319-3013399 48 8.71e-04 gcgctcccgg ccgcgcgc cgcgcccccg chr11:13299109-13299189 32 8.71e-04 GGCTGCCGAG CCGCGCGC GGATTGGCTG chr6:31830881-31830961 36 1.18e-03 TTAAAGAGCC GGGCGCGG AAAAAAAAAG chr10:98592568-98592648 1 1.18e-03 . GGGCGCGG GCGTGCTCGG chr12:2861938-2862018 38 1.18e-03 GCGTCTGCTC GGGCGCGG GGTGTGGCGC chr19:39138084-39138164 19 1.18e-03 GCCGGAGAGG GGGCGCGG CTCGCCCCCG chr16:23160803-23160883 15 1.34e-03 Tcccggcgcc gcccgccc ggcgcTGAAG chr19:41036384-41036464 68 1.34e-03 GCGAGCACCC GCCCGCCC GCTGC chr12:110151349-11015142 17 1.60e-03 CACCCGGCGC CGGCGCGC AGCATGCCGG chr4:1242761-1242841 18 1.60e-03 CCGACCACTC cggcgcgc tgcgccgccg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2456962-2457042 9.9e-05 65_[+3]_7 chr15:32163000-32163080 9.9e-05 39_[+3]_33 chr15:77712556-77712636 9.9e-05 52_[+3]_20 chr9:126692409-126692489 9.9e-05 1_[+3]_71 chr1:155036439-155036519 9.9e-05 28_[+3]_44 chr12:52345327-52345407 9.9e-05 2_[+3]_70 chr1:67395817-67395897 9.9e-05 4_[+3]_68 chr7:74072683-74072763 9.9e-05 1_[+3]_71 chr1:1822572-1822652 9.9e-05 8_[+3]_64 chr10:22518080-22518160 9.9e-05 54_[+3]_18 chr2:26407842-26407922 9.9e-05 4_[+3]_68 chr22:39548609-39548689 9.9e-05 59_[+3]_13 chr3:170075136-170075216 9.9e-05 21_[+3]_51 chr18:5296204-5296284 9.9e-05 23_[+3]_49 chr20:61427773-61427853 9.9e-05 14_[+3]_58 chr15:75287789-75287869 9.9e-05 69_[+3]_3 chr21:46238021-46238101 9.9e-05 59_[+3]_13 chr12:99038767-99038847 9.9e-05 47_[+3]_25 chr7:130790707-130790787 9.9e-05 9_[+3]_63 chr19:797891-797971 9.9e-05 68_[+3]_4 chr9:36572783-36572863 9.9e-05 36_[+3]_36 chr2:24163289-24163369 9.9e-05 1_[+3]_71 chr5:176560668-176560748 9.9e-05 7_[+3]_65 chr19:2269221-2269301 9.9e-05 29_[+3]_43 chr5:473130-473210 9.9e-05 38_[+3]_34 chr19:4400565-4400645 9.9e-05 13_[+3]_59 chr1:17240603-17240683 9.9e-05 43_[+3]_29 chr5:88179036-88179116 9.9e-05 60_[+3]_12 chr8:74659186-74659266 9.9e-05 51_[+3]_21 chr16:11890905-11890985 9.9e-05 2_[+3]_70 chr8:142402124-142402204 9.9e-05 6_[+3]_66 chr17:40428432-40428512 9.9e-05 5_[+3]_67 chr19:11071608-11071688 9.9e-05 32_[+3]_40 chr7:116593782-116593862 9.9e-05 46_[+3]_26 chr19:48901985-48902065 9.9e-05 26_[+3]_46 chr1:40367558-40367638 9.9e-05 50_[+3]_22 chr9:115096084-115096164 9.9e-05 59_[+3]_13 chr17:4843240-4843320 9.9e-05 53_[+3]_19 chr17:64298566-64298646 9.9e-05 32_[+3]_40 chr17:42277237-42277317 9.9e-05 27_[+3]_45 chr17:44344229-44344309 9.9e-05 70_[+3]_2 chr11:6440333-6440413 9.9e-05 17_[+3]_55 chr1:9884157-9884237 9.9e-05 20_[+3]_52 chr6:69345073-69345153 9.9e-05 9_[+3]_63 chr4:1242561-1242641 9.9e-05 45_[+3]_27 chr19:35759272-35759352 9.9e-05 60_[+3]_12 chr1:21113847-21113927 0.0002 26_[+3]_46 chr8:144699749-144699829 0.0002 23_[+3]_49 chr8:145560354-145560434 0.0002 67_[+3]_5 chr17:35766913-35766993 0.0002 55_[+3]_17 chr1:63833210-63833290 0.0002 18_[+3]_54 chr7:150756600-150756680 0.0002 69_[+3]_3 chr17:65989819-65989899 0.0002 66_[+3]_6 chr16:1662284-1662364 0.0003 38_[+3]_34 chr1:2457666-2457746 0.0003 41_[+3]_31 chr9:114659142-114659222 0.0003 22_[+3]_50 chr12:120703561-12070364 0.0003 [+3]_72 chr18:74534478-74534558 0.0003 2_[+3]_70 chr9:101558824-101558904 0.0003 44_[+3]_28 chr4:6717841-6717921 0.00035 44_[+3]_28 chr17:73179124-73179204 0.00035 17_[+3]_55 chr1:234614633-234614713 0.00035 45_[+3]_27 chr19:1407470-1407550 0.00035 66_[+3]_6 chr16:71918049-71918129 0.00035 17_[+3]_55 chr16:30103255-30103335 0.00051 34_[+3]_38 chr1:226297745-226297825 0.00051 43_[+3]_29 chr20:62694384-62694464 0.00051 27_[+3]_45 chr17:80056234-80056314 0.00051 28_[+3]_44 chr11:46143057-46143137 0.00051 53_[+3]_19 chr2:220094104-220094184 0.00051 21_[+3]_51 chr7:98741753-98741833 0.00051 20_[+3]_52 chr12:121734675-12173475 0.00051 11_[+3]_61 chr11:73309343-73309423 0.00061 23_[+3]_49 chr7:156931430-156931510 0.00061 4_[+3]_68 chr20:62289880-62289960 0.00061 63_[+3]_9 chr6:143381828-143381908 0.00061 63_[+3]_9 chr20:62258294-62258374 0.00061 18_[+3]_54 chr19:49947060-49947140 0.00061 48_[+3]_24 chr19:37663722-37663802 0.00061 34_[+3]_38 chr18:903790-903870 0.00061 29_[+3]_43 chr3:38847418-38847498 0.00077 16_[+3]_56 chr11:925773-925853 0.00077 43_[+3]_29 chr19:38397378-38397458 0.00077 53_[+3]_19 chr18:5295226-5295306 0.00077 72_[+3] chr18:3013319-3013399 0.00087 47_[+3]_25 chr11:13299109-13299189 0.00087 31_[+3]_41 chr6:31830881-31830961 0.0012 35_[+3]_37 chr10:98592568-98592648 0.0012 [+3]_72 chr12:2861938-2862018 0.0012 37_[+3]_35 chr19:39138084-39138164 0.0012 18_[+3]_54 chr16:23160803-23160883 0.0013 14_[+3]_58 chr19:41036384-41036464 0.0013 67_[+3]_5 chr12:110151349-11015142 0.0016 16_[+3]_56 chr4:1242761-1242841 0.0016 17_[+3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCGC width=8 seqs=94 chr19:2456962-2457042 ( 66) GCGCGCGC 1 chr15:32163000-32163080 ( 40) GCGCGCGC 1 chr15:77712556-77712636 ( 53) GCGCGCGC 1 chr9:126692409-126692489 ( 2) GCGCGCGC 1 chr1:155036439-155036519 ( 29) GCGCGCGC 1 chr12:52345327-52345407 ( 3) GCGCGCGC 1 chr1:67395817-67395897 ( 5) GCGCGCGC 1 chr7:74072683-74072763 ( 2) GCGCGCGC 1 chr1:1822572-1822652 ( 9) GCGCGCGC 1 chr10:22518080-22518160 ( 55) GCGCGCGC 1 chr2:26407842-26407922 ( 5) GCGCGCGC 1 chr22:39548609-39548689 ( 60) GCGCGCGC 1 chr3:170075136-170075216 ( 22) GCGCGCGC 1 chr18:5296204-5296284 ( 24) GCGCGCGC 1 chr20:61427773-61427853 ( 15) GCGCGCGC 1 chr15:75287789-75287869 ( 70) GCGCGCGC 1 chr21:46238021-46238101 ( 60) GCGCGCGC 1 chr12:99038767-99038847 ( 48) GCGCGCGC 1 chr7:130790707-130790787 ( 10) GCGCGCGC 1 chr19:797891-797971 ( 69) GCGCGCGC 1 chr9:36572783-36572863 ( 37) GCGCGCGC 1 chr2:24163289-24163369 ( 2) GCGCGCGC 1 chr5:176560668-176560748 ( 8) GCGCGCGC 1 chr19:2269221-2269301 ( 30) GCGCGCGC 1 chr5:473130-473210 ( 39) GCGCGCGC 1 chr19:4400565-4400645 ( 14) GCGCGCGC 1 chr1:17240603-17240683 ( 44) GCGCGCGC 1 chr5:88179036-88179116 ( 61) GCGCGCGC 1 chr8:74659186-74659266 ( 52) GCGCGCGC 1 chr16:11890905-11890985 ( 3) GCGCGCGC 1 chr8:142402124-142402204 ( 7) GCGCGCGC 1 chr17:40428432-40428512 ( 6) GCGCGCGC 1 chr19:11071608-11071688 ( 33) GCGCGCGC 1 chr7:116593782-116593862 ( 47) GCGCGCGC 1 chr19:48901985-48902065 ( 27) GCGCGCGC 1 chr1:40367558-40367638 ( 51) GCGCGCGC 1 chr9:115096084-115096164 ( 60) GCGCGCGC 1 chr17:4843240-4843320 ( 54) GCGCGCGC 1 chr17:64298566-64298646 ( 33) GCGCGCGC 1 chr17:42277237-42277317 ( 28) GCGCGCGC 1 chr17:44344229-44344309 ( 71) GCGCGCGC 1 chr11:6440333-6440413 ( 18) GCGCGCGC 1 chr1:9884157-9884237 ( 21) GCGCGCGC 1 chr6:69345073-69345153 ( 10) GCGCGCGC 1 chr4:1242561-1242641 ( 46) GCGCGCGC 1 chr19:35759272-35759352 ( 61) GCGCGCGC 1 chr1:21113847-21113927 ( 27) GGGCGCGC 1 chr8:144699749-144699829 ( 24) GGGCGCGC 1 chr8:145560354-145560434 ( 68) GGGCGCGC 1 chr17:35766913-35766993 ( 56) GGGCGCGC 1 chr1:63833210-63833290 ( 19) GGGCGCGC 1 chr7:150756600-150756680 ( 70) GGGCGCGC 1 chr17:65989819-65989899 ( 67) GGGCGCGC 1 chr16:1662284-1662364 ( 39) GCCCGCGC 1 chr1:2457666-2457746 ( 42) GCCCGCGC 1 chr9:114659142-114659222 ( 23) GCCCGCGC 1 chr12:120703561-12070364 ( 1) GCCCGCGC 1 chr18:74534478-74534558 ( 3) GCCCGCGC 1 chr9:101558824-101558904 ( 45) GCCCGCGC 1 chr4:6717841-6717921 ( 45) GAGCGCGC 1 chr17:73179124-73179204 ( 18) GAGCGCGC 1 chr1:234614633-234614713 ( 46) GAGCGCGC 1 chr19:1407470-1407550 ( 67) GAGCGCGC 1 chr16:71918049-71918129 ( 18) GAGCGCGC 1 chr16:30103255-30103335 ( 35) GCGCGCCC 1 chr1:226297745-226297825 ( 44) GTGCGCGC 1 chr20:62694384-62694464 ( 28) GTGCGCGC 1 chr17:80056234-80056314 ( 29) GTGCGCGC 1 chr11:46143057-46143137 ( 54) GCGCGCCC 1 chr2:220094104-220094184 ( 22) GCGCGCCC 1 chr7:98741753-98741833 ( 21) GCGCGCCC 1 chr12:121734675-12173475 ( 12) GCGCGCCC 1 chr11:73309343-73309423 ( 24) GGCCGCGC 1 chr7:156931430-156931510 ( 5) GGCCGCGC 1 chr20:62289880-62289960 ( 64) GGCCGCGC 1 chr6:143381828-143381908 ( 64) GGCCGCGC 1 chr20:62258294-62258374 ( 19) GGCCGCGC 1 chr19:49947060-49947140 ( 49) GGCCGCGC 1 chr19:37663722-37663802 ( 35) GGCCGCGC 1 chr18:903790-903870 ( 30) GGCCGCGC 1 chr3:38847418-38847498 ( 17) GCGTGCGC 1 chr11:925773-925853 ( 44) GCGTGCGC 1 chr19:38397378-38397458 ( 54) GCGTGCGC 1 chr18:5295226-5295306 ( 73) GCGCGCGG 1 chr18:3013319-3013399 ( 48) CCGCGCGC 1 chr11:13299109-13299189 ( 32) CCGCGCGC 1 chr6:31830881-31830961 ( 36) GGGCGCGG 1 chr10:98592568-98592648 ( 1) GGGCGCGG 1 chr12:2861938-2862018 ( 38) GGGCGCGG 1 chr19:39138084-39138164 ( 19) GGGCGCGG 1 chr16:23160803-23160883 ( 15) GCCCGCCC 1 chr19:41036384-41036464 ( 68) GCCCGCCC 1 chr12:110151349-11015142 ( 17) CGGCGCGC 1 chr4:1242761-1242841 ( 18) CGGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.02078 E= 7.9e-026 -1320 -291 162 -1320 -177 111 -48 -255 -1320 -91 141 -1320 -1320 160 -1320 -255 -1320 -1320 168 -1320 -1320 165 -1320 -1320 -1320 -210 157 -1320 -1320 157 -255 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 7.9e-026 0.000000 0.042553 0.957447 0.000000 0.053191 0.691489 0.223404 0.031915 0.000000 0.170213 0.829787 0.000000 0.000000 0.968085 0.000000 0.031915 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.074468 0.925532 0.000000 0.000000 0.946809 0.053191 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]GCGCGC -------------------------------------------------------------------------------- Time 12.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GAACCAGA MEME-4 width = 8 sites = 25 llr = 267 E-value = 5.6e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :aa:1a:a pos.-specific C :::a9:1: probability G a:::::9: matrix T :::::::: bits 2.5 ** * 2.2 ** * * 2.0 ** * * 1.7 **** * * Relative 1.5 **** * * Entropy 1.2 ******** (15.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAACCAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:102064160-102064240 48 1.07e-05 agaggcattt gaaccaga gggactccat chr16:26981076-26981156 3 1.07e-05 tc gaaccaga gcgactccat chr6:158425155-158425235 40 1.07e-05 agaggcgtat gaaccaga gcgactccat chr17:77007707-77007787 32 1.07e-05 agaggccttc gaaccaga gcaacaccat chr1:223079693-223079773 30 1.07e-05 agaggcgttt gaaccaga gcaactccat chr9:99183097-99183177 48 1.07e-05 agaggcctgt gaaccaga gcaactccat chr12:33099585-33099665 28 1.07e-05 agagacattt gaaccaga gtgactccat chr6:164758820-164758900 40 1.07e-05 agaggtattt gaaccaga gcgactccat chr16:12704977-12705057 42 1.07e-05 agagggattt gaaccaga gcaactccat chr3:101362796-101362876 52 1.07e-05 agagctgtta gaaccaga gtgactccat chr11:86648354-86648434 67 1.07e-05 agaggcgtct gaaccaga gcaact chr2:47525088-47525168 24 1.07e-05 agaggcgttt gaaccaga gtgactccat chr15:90325489-90325569 45 1.07e-05 agaggtgttt gaaccaga gcgattccat chr14:64830119-64830199 38 1.07e-05 agaggcatta gaaccaga gcaactccat chr19:52290342-52290422 44 1.07e-05 agaggcactg gaaccaga gcaactccat chrX:3619588-3619668 44 1.07e-05 agcggcatct gaaccaga gcaactccat chr8:29474754-29474834 16 1.07e-05 agagatgttc gaaccaga gcaactccat chr7:143067427-143067507 41 1.07e-05 agaggcaatt gaaccaga gcaactccat chr7:123139764-123139844 57 1.07e-05 agaggcgtgt gaaccaga gcaactccat chr1:247531189-247531269 34 1.67e-05 agatatattt gaacaaga gggactccat chr1:18748635-18748715 53 1.67e-05 aggggcgttt gaacaaga gtgactccat chr6:111140837-111140917 37 2.77e-05 tcaggcattt gaaccaca gtgactccat chrX:3488827-3488907 38 2.77e-05 agagacattt gaaccaca gcaactccat chr10:125701730-12570181 33 2.77e-05 agaggcatct gaaccaca gtgactccat chr3:48699257-48699337 32 3.88e-05 GCGGGGTGCT GAACCTGA TGCAGGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:102064160-102064240 1.1e-05 47_[+4]_25 chr16:26981076-26981156 1.1e-05 2_[+4]_70 chr6:158425155-158425235 1.1e-05 39_[+4]_33 chr17:77007707-77007787 1.1e-05 31_[+4]_41 chr1:223079693-223079773 1.1e-05 29_[+4]_43 chr9:99183097-99183177 1.1e-05 47_[+4]_25 chr12:33099585-33099665 1.1e-05 27_[+4]_45 chr6:164758820-164758900 1.1e-05 39_[+4]_33 chr16:12704977-12705057 1.1e-05 41_[+4]_31 chr3:101362796-101362876 1.1e-05 51_[+4]_21 chr11:86648354-86648434 1.1e-05 66_[+4]_6 chr2:47525088-47525168 1.1e-05 23_[+4]_49 chr15:90325489-90325569 1.1e-05 44_[+4]_28 chr14:64830119-64830199 1.1e-05 37_[+4]_35 chr19:52290342-52290422 1.1e-05 43_[+4]_29 chrX:3619588-3619668 1.1e-05 43_[+4]_29 chr8:29474754-29474834 1.1e-05 15_[+4]_57 chr7:143067427-143067507 1.1e-05 40_[+4]_32 chr7:123139764-123139844 1.1e-05 56_[+4]_16 chr1:247531189-247531269 1.7e-05 33_[+4]_39 chr1:18748635-18748715 1.7e-05 52_[+4]_20 chr6:111140837-111140917 2.8e-05 36_[+4]_36 chrX:3488827-3488907 2.8e-05 37_[+4]_35 chr10:125701730-12570181 2.8e-05 32_[+4]_40 chr3:48699257-48699337 3.9e-05 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAACCAGA width=8 seqs=25 chr9:102064160-102064240 ( 48) GAACCAGA 1 chr16:26981076-26981156 ( 3) GAACCAGA 1 chr6:158425155-158425235 ( 40) GAACCAGA 1 chr17:77007707-77007787 ( 32) GAACCAGA 1 chr1:223079693-223079773 ( 30) GAACCAGA 1 chr9:99183097-99183177 ( 48) GAACCAGA 1 chr12:33099585-33099665 ( 28) GAACCAGA 1 chr6:164758820-164758900 ( 40) GAACCAGA 1 chr16:12704977-12705057 ( 42) GAACCAGA 1 chr3:101362796-101362876 ( 52) GAACCAGA 1 chr11:86648354-86648434 ( 67) GAACCAGA 1 chr2:47525088-47525168 ( 24) GAACCAGA 1 chr15:90325489-90325569 ( 45) GAACCAGA 1 chr14:64830119-64830199 ( 38) GAACCAGA 1 chr19:52290342-52290422 ( 44) GAACCAGA 1 chrX:3619588-3619668 ( 44) GAACCAGA 1 chr8:29474754-29474834 ( 16) GAACCAGA 1 chr7:143067427-143067507 ( 41) GAACCAGA 1 chr7:123139764-123139844 ( 57) GAACCAGA 1 chr1:247531189-247531269 ( 34) GAACAAGA 1 chr1:18748635-18748715 ( 53) GAACAAGA 1 chr6:111140837-111140917 ( 37) GAACCACA 1 chrX:3488827-3488907 ( 38) GAACCACA 1 chr10:125701730-12570181 ( 33) GAACCACA 1 chr3:48699257-48699337 ( 32) GAACCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 5.6e-021 -1129 -1129 168 -1129 246 -1129 -1129 -1129 246 -1129 -1129 -1129 -1129 165 -1129 -1129 -118 153 -1129 -1129 240 -1129 -1129 -222 -1129 -141 149 -1129 246 -1129 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.6e-021 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.080000 0.920000 0.000000 0.000000 0.960000 0.000000 0.000000 0.040000 0.000000 0.120000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-4 regular expression -------------------------------------------------------------------------------- GAACCAGA -------------------------------------------------------------------------------- Time 15.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGKTMAA MEME-5 width = 8 sites = 39 llr = 357 E-value = 1.7e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::::498 pos.-specific C :::::611 probability G :9a4:::1 matrix T 91:6a::: bits 2.5 * 2.2 * * * 2.0 * * * 1.7 * * * Relative 1.5 *** * ** Entropy 1.2 *** * ** (13.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGTTCAA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:74962373-74962453 49 3.77e-06 ggagttgctc tggttaaa acgtctctgc chr12:131847294-13184737 46 1.04e-05 ggagtcactc tggttcaa acgtctctgg chr12:132090124-13209020 39 1.04e-05 ggagtcattc tggttcaa atgcctctga chr3:44482955-44483035 46 1.04e-05 ggagtcactc tggttcaa acgcctctga chr18:43742143-43742223 39 1.04e-05 ggagtcgctc tggttcaa acacctctga chr6:147770868-147770948 65 1.04e-05 ggagacattc tggttcaa atgcctct chr17:46903284-46903364 36 1.04e-05 ggagtcactc tggttcaa acacctctga chr9:110438226-110438306 37 1.04e-05 ggagtcactc tggttcaa acgcctctga chr20:39577462-39577542 41 1.04e-05 ggagttgctc tggttcaa atgcctccga chr6:24756964-24757044 63 1.04e-05 ggagttgctc tggttcaa atgcctctgG chr20:46768458-46768538 38 1.04e-05 ggagttgctc tggttcaa gtgcctctga chr17:41430102-41430182 35 1.04e-05 ggagtcgctt tggttcaa atgcctcgga chr16:26981076-26981156 34 1.67e-05 aaataggggc tgggtaaa taaaataatg chr17:77007707-77007787 63 1.67e-05 gaataagggc tgggtaaa tgagacctgc chr1:223079693-223079773 61 1.67e-05 aaataggggc tgggtaaa aaaaacgctg chr6:164758820-164758900 71 1.67e-05 gaataggggc tgggtaaa at chrX:3488827-3488907 69 1.67e-05 gaataggggc tgggtaaa atga chr2:47525088-47525168 55 1.67e-05 aagtaggggc tgggtaaa ataagggtaa chr1:247531189-247531269 65 1.67e-05 gaagatgggc tgggtaaa aaaaagct chr14:64830119-64830199 69 1.67e-05 gaataggggc tgggtaaa gtaa chr8:29474754-29474834 47 1.67e-05 gaatagggac tgggtaaa ataaggcgaa chr7:143067427-143067507 72 1.67e-05 gaataggagc tgggtaaa a chr10:125701730-12570181 64 1.67e-05 gaacagggac tgggtaaa ccgagggta chr6:158425155-158425235 71 2.79e-05 gaataggggc tgggtcaa at chr15:89545335-89545415 20 2.79e-05 tggagttagt tgggtcaa gggtgctgta chr1:18748635-18748715 23 3.41e-05 tatacgcctg ttgttcaa gctggcccag chr4:79615509-79615589 13 3.78e-05 ggcagtttgg aggttaaa ggtaagatgg chr12:127388097-12738817 53 5.74e-05 ggagttgctc aggttcaa atgtctttga chr3:14639930-14640010 53 5.74e-05 TCAAAGCCTT TGGTTAAC TACGTTGACA chr16:1344206-1344286 55 8.07e-05 ggagttgctc tggttcac acgcctctga chr11:70496554-70496634 23 8.07e-05 TGCCCTGGAG TGGTTCAG CACCCTGGAG chr14:103000339-10300041 22 8.07e-05 ggagttgctc tggttcac acaactcaac chr2:128685154-128685234 52 8.07e-05 tactggggtc tggttcag aagctcaata chr16:12704977-12705057 73 8.66e-05 gggtaggagc tggataaa chr21:38939236-38939316 34 9.69e-05 tagaggtgag tgattcaa cccttgcttg chr6:27862242-27862322 17 1.14e-04 CCTTCTTTGA TTGGTCAA CGCTCTATTT chr15:68193172-68193252 41 1.26e-04 ggagttgctc tggttcca gtgcttctaa chr7:123633154-123633234 41 1.26e-04 ggagtcactc tggttcca atgcttctga chr15:41099702-41099782 43 2.04e-04 AATTGTGTTC TGGGTCAG GCTTGACTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:74962373-74962453 3.8e-06 48_[+5]_24 chr12:131847294-13184737 1e-05 45_[+5]_27 chr12:132090124-13209020 1e-05 38_[+5]_34 chr3:44482955-44483035 1e-05 45_[+5]_27 chr18:43742143-43742223 1e-05 38_[+5]_34 chr6:147770868-147770948 1e-05 64_[+5]_8 chr17:46903284-46903364 1e-05 35_[+5]_37 chr9:110438226-110438306 1e-05 36_[+5]_36 chr20:39577462-39577542 1e-05 40_[+5]_32 chr6:24756964-24757044 1e-05 62_[+5]_10 chr20:46768458-46768538 1e-05 37_[+5]_35 chr17:41430102-41430182 1e-05 34_[+5]_38 chr16:26981076-26981156 1.7e-05 33_[+5]_39 chr17:77007707-77007787 1.7e-05 62_[+5]_10 chr1:223079693-223079773 1.7e-05 60_[+5]_12 chr6:164758820-164758900 1.7e-05 70_[+5]_2 chrX:3488827-3488907 1.7e-05 68_[+5]_4 chr2:47525088-47525168 1.7e-05 54_[+5]_18 chr1:247531189-247531269 1.7e-05 64_[+5]_8 chr14:64830119-64830199 1.7e-05 68_[+5]_4 chr8:29474754-29474834 1.7e-05 46_[+5]_26 chr7:143067427-143067507 1.7e-05 71_[+5]_1 chr10:125701730-12570181 1.7e-05 63_[+5]_9 chr6:158425155-158425235 2.8e-05 70_[+5]_2 chr15:89545335-89545415 2.8e-05 19_[+5]_53 chr1:18748635-18748715 3.4e-05 22_[+5]_50 chr4:79615509-79615589 3.8e-05 12_[+5]_60 chr12:127388097-12738817 5.7e-05 52_[+5]_20 chr3:14639930-14640010 5.7e-05 52_[+5]_20 chr16:1344206-1344286 8.1e-05 54_[+5]_18 chr11:70496554-70496634 8.1e-05 22_[+5]_50 chr14:103000339-10300041 8.1e-05 21_[+5]_51 chr2:128685154-128685234 8.1e-05 51_[+5]_21 chr16:12704977-12705057 8.7e-05 72_[+5] chr21:38939236-38939316 9.7e-05 33_[+5]_39 chr6:27862242-27862322 0.00011 16_[+5]_56 chr15:68193172-68193252 0.00013 40_[+5]_32 chr7:123633154-123633234 0.00013 40_[+5]_32 chr15:41099702-41099782 0.0002 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGKTMAA width=8 seqs=39 chr4:74962373-74962453 ( 49) TGGTTAAA 1 chr12:131847294-13184737 ( 46) TGGTTCAA 1 chr12:132090124-13209020 ( 39) TGGTTCAA 1 chr3:44482955-44483035 ( 46) TGGTTCAA 1 chr18:43742143-43742223 ( 39) TGGTTCAA 1 chr6:147770868-147770948 ( 65) TGGTTCAA 1 chr17:46903284-46903364 ( 36) TGGTTCAA 1 chr9:110438226-110438306 ( 37) TGGTTCAA 1 chr20:39577462-39577542 ( 41) TGGTTCAA 1 chr6:24756964-24757044 ( 63) TGGTTCAA 1 chr20:46768458-46768538 ( 38) TGGTTCAA 1 chr17:41430102-41430182 ( 35) TGGTTCAA 1 chr16:26981076-26981156 ( 34) TGGGTAAA 1 chr17:77007707-77007787 ( 63) TGGGTAAA 1 chr1:223079693-223079773 ( 61) TGGGTAAA 1 chr6:164758820-164758900 ( 71) TGGGTAAA 1 chrX:3488827-3488907 ( 69) TGGGTAAA 1 chr2:47525088-47525168 ( 55) TGGGTAAA 1 chr1:247531189-247531269 ( 65) TGGGTAAA 1 chr14:64830119-64830199 ( 69) TGGGTAAA 1 chr8:29474754-29474834 ( 47) TGGGTAAA 1 chr7:143067427-143067507 ( 72) TGGGTAAA 1 chr10:125701730-12570181 ( 64) TGGGTAAA 1 chr6:158425155-158425235 ( 71) TGGGTCAA 1 chr15:89545335-89545415 ( 20) TGGGTCAA 1 chr1:18748635-18748715 ( 23) TTGTTCAA 1 chr4:79615509-79615589 ( 13) AGGTTAAA 1 chr12:127388097-12738817 ( 53) AGGTTCAA 1 chr3:14639930-14640010 ( 53) TGGTTAAC 1 chr16:1344206-1344286 ( 55) TGGTTCAC 1 chr11:70496554-70496634 ( 23) TGGTTCAG 1 chr14:103000339-10300041 ( 22) TGGTTCAC 1 chr2:128685154-128685234 ( 52) TGGTTCAG 1 chr16:12704977-12705057 ( 73) TGGATAAA 1 chr21:38939236-38939316 ( 34) TGATTCAA 1 chr6:27862242-27862322 ( 17) TTGGTCAA 1 chr15:68193172-68193252 ( 41) TGGTTCCA 1 chr7:123633154-123633234 ( 41) TGGTTCCA 1 chr15:41099702-41099782 ( 43) TGGGTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09119 E= 1.7e-020 -182 -1193 -1193 234 -1193 -1193 160 -186 -282 -1193 164 -1193 -282 -1193 30 166 -1193 -1193 -1193 242 109 95 -1193 -1193 239 -264 -1193 -1193 222 -205 -202 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.7e-020 0.051282 0.000000 0.000000 0.948718 0.000000 0.000000 0.948718 0.051282 0.025641 0.000000 0.974359 0.000000 0.025641 0.000000 0.384615 0.589744 0.000000 0.000000 0.000000 1.000000 0.384615 0.615385 0.000000 0.000000 0.948718 0.051282 0.000000 0.000000 0.846154 0.076923 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKTMAA MEME-5 regular expression -------------------------------------------------------------------------------- TGG[TG]T[CA]AA -------------------------------------------------------------------------------- Time 19.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:5295226-5295306 7.05e-01 80 chr17:65989819-65989899 5.38e-01 80 chr19:35759272-35759352 3.72e-01 60_[+3(9.94e-05)]_12 chr2:10091611-10091691 8.61e-01 80 chr4:1242561-1242641 3.15e-01 45_[+3(9.94e-05)]_27 chr6:69345073-69345153 2.96e-01 9_[+3(9.94e-05)]_63 chr7:150756600-150756680 5.39e-01 80 chr1:9884157-9884237 4.05e-01 20_[+3(9.94e-05)]_17_[+3(9.94e-05)]_\ 27 chr12:121734675-12173475 2.78e-01 80 chr11:6440333-6440413 1.71e-02 17_[+3(9.94e-05)]_18_[+2(5.17e-05)]_\ 29 chr9:101558824-101558904 5.78e-01 80 chr15:89545335-89545415 9.31e-04 5_[+1(6.10e-06)]_6_[+5(2.79e-05)]_\ 53 chr17:44344229-44344309 3.09e-01 28_[+3(9.94e-05)]_32_[+3(9.94e-05)]_\ 4 chr1:10754810-10754890 7.95e-01 80 chr17:42277237-42277317 1.24e-01 23_[+3(9.94e-05)]_49 chr7:98741753-98741833 7.11e-01 80 chr17:64298566-64298646 3.87e-01 32_[+3(9.94e-05)]_40 chr20:10415804-10415884 1.20e-01 26_[+2(5.17e-05)]_46 chr17:4843240-4843320 3.49e-02 33_[+3(9.94e-05)]_12_[+3(9.94e-05)]_\ 19 chr9:115096084-115096164 2.14e-01 53_[+3(9.94e-05)]_19 chr1:40367558-40367638 4.12e-01 48_[+3(9.94e-05)]_24 chr19:48901985-48902065 1.83e-02 26_[+3(9.94e-05)]_46 chr9:136933272-136933352 8.75e-01 80 chr10:124671552-12467163 3.08e-01 80 chr2:220094104-220094184 2.63e-01 80 chr6:147788704-147788784 5.98e-02 31_[+2(1.40e-05)]_41 chr19:49148180-49148260 6.13e-01 80 chr7:116593782-116593862 1.40e-01 46_[+3(9.94e-05)]_26 chr19:11071608-11071688 3.21e-01 30_[+3(9.94e-05)]_42 chr1:63833210-63833290 3.78e-01 80 chr17:40428432-40428512 2.70e-01 5_[+3(9.94e-05)]_67 chr8:142402124-142402204 3.66e-01 6_[+3(9.94e-05)]_66 chr1:159147235-159147315 5.98e-01 80 chr16:11890905-11890985 1.83e-01 2_[+3(9.94e-05)]_19_[+3(9.94e-05)]_\ 43 chr9:128845123-128845203 7.12e-01 80 chr19:38397378-38397458 3.89e-01 80 chr19:7627876-7627956 8.95e-01 80 chr8:74659186-74659266 4.19e-01 49_[+3(9.94e-05)]_23 chr7:123633154-123633234 9.58e-05 3_[+2(8.78e-05)]_14_[+1(6.10e-06)]_\ 47 chr17:41430102-41430182 5.18e-04 19_[+1(9.63e-06)]_7_[+5(1.04e-05)]_\ 38 chr11:78128962-78129042 5.00e-01 80 chr5:88179036-88179116 4.25e-01 7_[+3(9.94e-05)]_9_[+3(9.94e-05)]_\ 28_[+3(9.94e-05)]_12 chr1:17240603-17240683 2.32e-01 43_[+3(9.94e-05)]_29 chr16:71501807-71501887 5.51e-01 80 chr19:4400565-4400645 4.44e-01 13_[+3(9.94e-05)]_11_[+3(9.94e-05)]_\ 40 chr5:473130-473210 4.55e-02 38_[+3(9.94e-05)]_34 chr5:174905525-174905605 9.94e-01 80 chr1:59762308-59762388 7.55e-01 80 chr9:115819005-115819085 2.72e-02 41_[+2(5.17e-05)]_31 chr18:903790-903870 4.54e-01 80 chr19:44293357-44293437 8.66e-01 80 chr19:51142555-51142635 9.72e-01 80 chr2:42064242-42064322 4.95e-01 80 chr4:1242761-1242841 9.01e-01 80 chr1:35390561-35390641 7.34e-01 80 chr11:46143057-46143137 7.41e-01 80 chr19:37663722-37663802 1.20e-03 68_[+2(3.23e-05)]_4 chr19:2269221-2269301 1.76e-01 29_[+3(9.94e-05)]_43 chr10:125701730-12570181 7.19e-06 32_[+4(2.77e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_9 chr5:176560668-176560748 4.25e-01 7_[+3(9.94e-05)]_65 chr17:46438364-46438444 1.58e-01 80 chr17:80056234-80056314 5.78e-01 80 chr15:101874339-10187441 8.88e-01 80 chr19:49224010-49224090 5.85e-01 80 chr1:160518934-160519014 1.97e-01 80 chr8:10847817-10847897 2.06e-01 80 chr11:925773-925853 7.83e-01 80 chr20:35012584-35012664 5.90e-02 35_[+1(1.32e-05)]_37 chr2:24163289-24163369 1.05e-01 1_[+3(9.94e-05)]_28_[+3(9.94e-05)]_\ 35 chr9:36572783-36572863 3.33e-01 36_[+3(9.94e-05)]_36 chr19:797891-797971 3.83e-01 68_[+3(9.94e-05)]_4 chr1:23857713-23857793 5.09e-01 80 chr7:30711625-30711705 1.48e-01 80 chr2:181845273-181845353 7.55e-01 80 chr1:243419189-243419269 6.95e-01 80 chr7:130790707-130790787 4.08e-01 9_[+3(9.94e-05)]_63 chr20:36255536-36255616 5.88e-01 80 chr16:71918049-71918129 3.74e-01 80 chr3:14639930-14640010 1.71e-01 52_[+5(5.74e-05)]_20 chr17:35766913-35766993 5.79e-01 80 chr20:46768458-46768538 3.29e-04 22_[+1(6.10e-06)]_7_[+5(1.04e-05)]_\ 35 chr9:126872735-126872815 7.16e-01 80 chr21:30164067-30164147 5.20e-04 36_[+2(1.15e-05)]_36 chr8:145560354-145560434 2.95e-01 80 chr19:41036384-41036464 4.19e-01 80 chr12:55413745-55413825 8.57e-01 80 chr6:24756964-24757044 1.94e-04 47_[+1(6.10e-06)]_7_[+5(1.04e-05)]_\ 10 chr6:43215019-43215099 1.90e-01 80 chr19:1407470-1407550 5.12e-01 80 chr10:94608262-94608342 7.30e-02 25_[+1(6.58e-05)]_47 chr19:50321363-50321443 1.28e-01 68_[+1(9.07e-05)]_4 chr3:57741755-57741835 2.14e-02 59_[+1(5.36e-05)]_13 chr18:74534478-74534558 4.93e-01 80 chr12:99038767-99038847 8.52e-02 47_[+3(9.94e-05)]_25 chr2:128685154-128685234 2.72e-04 24_[+2(4.24e-06)]_19_[+5(8.07e-05)]_\ 21 chr21:46238021-46238101 2.65e-01 59_[+3(9.94e-05)]_13 chr11:221027-221107 2.38e-01 80 chr7:123139764-123139844 1.01e-05 56_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 3 chrX:15901553-15901633 2.68e-02 20_[+1(6.10e-06)]_52 chr7:143067427-143067507 3.50e-06 40_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_1 chr19:50651542-50651622 8.17e-01 80 chr15:75287789-75287869 1.42e-01 69_[+3(9.94e-05)]_3 chr19:39138084-39138164 6.62e-01 80 chr15:68193172-68193252 1.17e-04 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23_[+1(9.63e-06)]_49 chr14:106267638-10626771 1.07e-01 23_[+1(7.41e-05)]_49 chr10:22518080-22518160 1.97e-01 54_[+3(9.94e-05)]_18 chr17:46903284-46903364 2.24e-04 20_[+1(6.10e-06)]_7_[+5(1.04e-05)]_\ 37 chr1:1822572-1822652 2.72e-01 8_[+3(9.94e-05)]_64 chrX:1021129-1021209 1.69e-01 6_[+2(5.17e-05)]_14_[+2(5.17e-05)]_\ 36_[+2(5.17e-05)] chr12:6722807-6722887 3.45e-01 80 chr15:90325489-90325569 2.76e-04 44_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 15 chr6:147770868-147770948 1.13e-05 26_[+2(8.78e-05)]_15_[+1(6.10e-06)]_\ 7_[+5(1.04e-05)]_8 chr3:38847418-38847498 1.12e-01 80 chr1:247531189-247531269 1.04e-07 33_[+4(1.67e-05)]_5_[+2(1.15e-05)]_\ 1_[+1(5.00e-05)]_1_[+5(1.67e-05)]_8 chr7:74072683-74072763 3.64e-01 1_[+3(9.94e-05)]_21_[+3(9.94e-05)]_\ 42 chr1:67395817-67395897 1.80e-01 2_[+3(9.94e-05)]_70 chr15:41099702-41099782 3.35e-01 80 chr2:47525088-47525168 5.20e-07 23_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_18 chrX:3488827-3488907 5.91e-06 37_[+4(2.77e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_4 chr12:52345327-52345407 4.43e-01 2_[+3(9.94e-05)]_20_[+3(9.94e-05)]_\ 42 chr19:54020433-54020513 7.95e-01 80 chr9:99445945-99446025 1.15e-02 33_[+2(4.24e-06)]_39 chr19:4342899-4342979 2.74e-01 80 chr7:30954457-30954537 7.47e-01 80 chr11:13299109-13299189 7.82e-01 80 chr3:48699257-48699337 4.64e-02 31_[+4(3.88e-05)]_41 chr1:247095476-247095556 7.81e-01 80 chr4:79615509-79615589 1.12e-03 12_[+5(3.78e-05)]_3_[+1(6.10e-06)]_\ 49 chr1:2457666-2457746 4.21e-01 80 chr1:226297745-226297825 6.27e-01 80 chr16:30103255-30103335 9.64e-02 80 chr19:52490160-52490240 1.79e-03 30_[+1(6.58e-05)]_42 chr16:23160803-23160883 3.12e-02 80 chr12:31771260-31771340 4.29e-01 80 chr22:30163167-30163247 1.24e-01 80 chr12:2861938-2862018 5.56e-01 80 chr8:144699749-144699829 1.28e-01 80 chr19:49947060-49947140 9.08e-02 80 chr18:43742143-43742223 6.56e-05 23_[+1(6.10e-06)]_7_[+5(1.04e-05)]_\ 34 chr16:1662284-1662364 6.52e-01 80 chr11:86648354-86648434 4.58e-04 66_[+4(1.07e-05)]_6 chr1:155036439-155036519 2.84e-01 28_[+3(9.94e-05)]_44 chr14:103000339-10300041 1.72e-03 6_[+1(6.10e-06)]_7_[+5(8.07e-05)]_\ 51 chr1:55359157-55359237 2.41e-02 40_[+2(4.24e-06)]_32 chr17:73179124-73179204 2.90e-01 80 chr4:74962373-74962453 6.19e-07 10_[+2(5.17e-05)]_15_[+1(6.10e-06)]_\ 7_[+5(3.77e-06)]_24 chr3:44482955-44483035 1.14e-04 30_[+1(6.10e-06)]_7_[+5(1.04e-05)]_\ 27 chr2:152237300-152237380 1.85e-02 43_[+2(4.24e-06)]_29 chr20:36170892-36170972 4.20e-02 36_[+1(3.39e-05)]_36 chr17:26335697-26335777 3.83e-01 80 chr20:62258294-62258374 5.62e-01 80 chr14:81408118-81408198 3.66e-02 80 chr6:143381828-143381908 6.47e-01 80 chr1:205744600-205744680 8.13e-02 80 chr20:47805031-47805111 3.43e-01 80 chr12:132090124-13209020 4.49e-05 23_[+1(6.10e-06)]_7_[+5(1.04e-05)]_\ 34 chr18:3013319-3013399 7.69e-01 80 chr21:38939236-38939316 1.13e-02 33_[+5(9.69e-05)]_39 chr2:68694524-68694604 7.18e-02 43_[+1(5.00e-05)]_29 chr11:97844203-97844283 1.03e-01 54_[+2(2.53e-05)]_18 chr10:98592568-98592648 7.96e-01 80 chr20:62289880-62289960 3.71e-02 80 chr6:31830881-31830961 2.28e-02 80 chr2:205219399-205219479 7.02e-03 14_[+1(6.10e-06)]_10_[+1(6.10e-06)]_\ 40 chr3:101362796-101362876 1.35e-04 51_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 8 chr5:176264780-176264860 8.91e-01 80 chr3:156338125-156338205 2.73e-02 3_[+1(7.41e-05)]_69 chr16:12704977-12705057 1.36e-06 41_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(8.66e-05)] chr6:38607546-38607626 8.16e-01 80 chr15:45876402-45876482 6.49e-04 3_[+2(8.78e-05)]_14_[+1(6.10e-06)]_\ 47 chr6:134612679-134612759 8.33e-02 80 chr1:21113847-21113927 5.74e-01 80 chr6:134612476-134612556 3.78e-02 12_[+1(9.63e-06)]_60 chr6:158176320-158176400 3.51e-01 80 chr1:31632828-31632908 3.36e-01 80 chr11:70496554-70496634 6.10e-02 22_[+5(8.07e-05)]_50 chr9:126692409-126692489 4.07e-01 1_[+3(9.94e-05)]_71 chr8:41676492-41676572 4.13e-02 16_[+1(3.39e-05)]_56 chr19:33462990-33463070 8.95e-02 80 chr13:109335294-10933537 2.79e-03 1_[+1(1.32e-05)]_10_[+1(6.10e-06)]_\ 53 chr2:72984381-72984461 1.19e-02 24_[+1(9.63e-06)]_24_[+1(7.41e-05)]_\ 16 chr15:77712556-77712636 3.25e-01 7_[+3(9.94e-05)]_37_[+3(9.94e-05)]_\ 20 chr6:164758820-164758900 2.69e-06 39_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_2 chr20:39890795-39890875 5.72e-01 80 chr9:136933478-136933558 7.11e-01 80 chr12:33099585-33099665 1.16e-04 27_[+4(1.07e-05)]_5_[+2(7.23e-05)]_\ 32 chr1:223920407-223920487 2.05e-03 13_[+1(6.10e-06)]_59 chr8:101514068-101514148 1.41e-02 57_[+2(1.15e-05)]_15 chr9:99183097-99183177 2.87e-06 47_[+4(1.07e-05)]_5_[+2(4.24e-06)]_\ [+1(9.42e-05)]_4 chr6:111140837-111140917 3.10e-06 10_[+1(1.32e-05)]_18_[+4(2.77e-05)]_\ 5_[+2(1.15e-05)]_23 chr1:223079693-223079773 5.79e-07 29_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_12 chr7:156931430-156931510 5.64e-01 80 chr12:131847294-13184737 8.16e-06 7_[+2(8.78e-05)]_15_[+1(6.10e-06)]_\ 7_[+5(1.04e-05)]_27 chr15:68316157-68316237 5.15e-03 35_[+1(6.10e-06)]_37 chr4:6717841-6717921 5.05e-01 80 chr11:73309343-73309423 1.37e-01 80 chr16:1344206-1344286 1.06e-05 17_[+2(1.40e-05)]_14_[+1(6.10e-06)]_\ 7_[+5(8.07e-05)]_18 chr16:577577-577657 8.99e-01 80 chr15:76135525-76135605 9.27e-02 80 chr17:77007707-77007787 4.61e-06 31_[+4(1.07e-05)]_23_[+5(1.67e-05)]_\ 10 chr6:158425155-158425235 4.10e-06 39_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(2.79e-05)]_2 chr16:70488260-70488340 4.69e-01 80 chr14:58765068-58765148 5.28e-01 80 chr15:40675060-40675140 2.51e-01 80 chr19:46431104-46431184 1.83e-01 80 chr1:212651644-212651724 1.99e-02 39_[+2(4.24e-06)]_33 chr16:26981076-26981156 4.63e-07 2_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 10_[+5(1.67e-05)]_39 chr5:175223992-175224072 8.22e-01 80 chr15:32163000-32163080 4.48e-01 39_[+3(9.94e-05)]_33 chr9:102064160-102064240 7.15e-04 47_[+4(1.07e-05)]_5_[+2(1.15e-05)]_\ 12 chr19:2456962-2457042 4.12e-01 65_[+3(9.94e-05)]_7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************