******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:140044921-140045001 1.0000 80 chr8:144627958-144628038 1.0000 80 chr14:21474102-21474182 1.0000 80 chr19:44259741-44259821 1.0000 80 chr1:144886691-144886771 1.0000 80 chr17:34257740-34257820 1.0000 80 chr11:64808434-64808514 1.0000 80 chr15:44119196-44119276 1.0000 80 chr6:27520294-27520374 1.0000 80 chr3:6549383-6549463 1.0000 80 chr12:4647996-4648076 1.0000 80 chr12:12849072-12849152 1.0000 80 chr12:6603177-6603257 1.0000 80 chr1:1446529-1446609 1.0000 80 chr10:115614110-11561419 1.0000 80 chrX:48114602-48114682 1.0000 80 chr2:242823386-242823466 1.0000 80 chr7:138124151-138124231 1.0000 80 chr21:23582195-23582275 1.0000 80 chr6:26188724-26188804 1.0000 80 chr6:37137507-37137587 1.0000 80 chr15:89787610-89787690 1.0000 80 chr6:153197077-153197157 1.0000 80 chr15:96181529-96181609 1.0000 80 chr17:71187801-71187881 1.0000 80 chrX:133931362-133931442 1.0000 80 chrX:123095800-123095880 1.0000 80 chr6:90539438-90539518 1.0000 80 chr1:32908154-32908234 1.0000 80 chr14:51706612-51706692 1.0000 80 chr6:74019488-74019568 1.0000 80 chr5:159827001-159827081 1.0000 80 chr12:92073356-92073436 1.0000 80 chr9:86595672-86595752 1.0000 80 chr8:127304986-127305066 1.0000 80 chr20:1448667-1448747 1.0000 80 chr7:14030717-14030797 1.0000 80 chr17:21002574-21002654 1.0000 80 chr1:156368386-156368466 1.0000 80 chr3:6560615-6560695 1.0000 80 chr15:89529140-89529220 1.0000 80 chr17:60501109-60501189 1.0000 80 chr19:14529044-14529124 1.0000 80 chr15:51895934-51896014 1.0000 80 chr16:67281559-67281639 1.0000 80 chr6:27775871-27775951 1.0000 80 chr19:45909353-45909433 1.0000 80 chr16:31192144-31192224 1.0000 80 chr15:68346376-68346456 1.0000 80 chr13:39612437-39612517 1.0000 80 chr4:99785847-99785927 1.0000 80 chr5:126114102-126114182 1.0000 80 chr14:75530674-75530754 1.0000 80 chr19:40336342-40336422 1.0000 80 chr11:134093845-13409392 1.0000 80 chr10:135173751-13517383 1.0000 80 chr11:75863338-75863418 1.0000 80 chr6:105400922-105401002 1.0000 80 chr13:50656076-50656156 1.0000 80 chr17:8113882-8113962 1.0000 80 chr1:155197519-155197599 1.0000 80 chr1:91966485-91966565 1.0000 80 chr19:47292095-47292175 1.0000 80 chr2:12072497-12072577 1.0000 80 chr1:12597465-12597545 1.0000 80 chr19:14492891-14492971 1.0000 80 chr20:1448468-1448548 1.0000 80 chr15:30918216-30918296 1.0000 80 chr18:658393-658473 1.0000 80 chr20:23117573-23117653 1.0000 80 chr9:91933794-91933874 1.0000 80 chr15:48624332-48624412 1.0000 80 chr12:31226859-31226939 1.0000 80 chr3:6560823-6560903 1.0000 80 chr8:117887022-117887102 1.0000 80 chr11:13485424-13485504 1.0000 80 chr6:84686749-84686829 1.0000 80 chrX:48138494-48138574 1.0000 80 chr17:16284689-16284769 1.0000 80 chr14:50065673-50065753 1.0000 80 chr19:49164358-49164438 1.0000 80 chr17:57232243-57232323 1.0000 80 chr10:94352852-94352932 1.0000 80 chr12:6960398-6960478 1.0000 80 chr15:40397203-40397283 1.0000 80 chr4:174255764-174255844 1.0000 80 chr8:86019317-86019397 1.0000 80 chr17:36858788-36858868 1.0000 80 chr9:106856548-106856628 1.0000 80 chrX:100604004-100604084 1.0000 80 chr4:88311381-88311461 1.0000 80 chr16:58270375-58270455 1.0000 80 chr19:47290061-47290141 1.0000 80 chr12:39932568-39932648 1.0000 80 chr5:112312228-112312308 1.0000 80 chr12:54673947-54674027 1.0000 80 chr2:128284363-128284443 1.0000 80 chr8:27695294-27695374 1.0000 80 chr6:97730999-97731079 1.0000 80 chrX:118987068-118987148 1.0000 80 chr13:31040202-31040282 1.0000 80 chr11:95523072-95523152 1.0000 80 chr2:130939172-130939252 1.0000 80 chr11:9595095-9595175 1.0000 80 chr19:51246257-51246337 1.0000 80 chr4:120987908-120987988 1.0000 80 chr9:73035844-73035924 1.0000 80 chr1:40167532-40167612 1.0000 80 chr22:38966088-38966168 1.0000 80 chr22:41986087-41986167 1.0000 80 chr19:53238263-53238343 1.0000 80 chr11:74303586-74303666 1.0000 80 chr8:124084718-124084798 1.0000 80 chr12:98910346-98910426 1.0000 80 chr6:26197742-26197822 1.0000 80 chr11:76155913-76155993 1.0000 80 chr1:51443114-51443194 1.0000 80 chrX:70503460-70503540 1.0000 80 chr10:105881902-10588198 1.0000 80 chr11:111472679-11147275 1.0000 80 chrX:48659798-48659878 1.0000 80 chr17:47755679-47755759 1.0000 80 chr19:48867498-48867578 1.0000 80 chr14:65308582-65308662 1.0000 80 chr11:13485224-13485304 1.0000 80 chr9:37465738-37465818 1.0000 80 chr11:19262599-19262679 1.0000 80 chr19:50832978-50833058 1.0000 80 chrX:100353034-100353114 1.0000 80 chr1:226595226-226595306 1.0000 80 chr5:176739415-176739495 1.0000 80 chr11:58346310-58346390 1.0000 80 chr14:54863532-54863612 1.0000 80 chr20:31230254-31230334 1.0000 80 chr15:85523640-85523720 1.0000 80 chrX:69509950-69510030 1.0000 80 chr9:100685016-100685096 1.0000 80 chr2:158866896-158866976 1.0000 80 chr19:41256728-41256808 1.0000 80 chr19:13262737-13262817 1.0000 80 chr6:153303396-153303476 1.0000 80 chr11:118966370-11896645 1.0000 80 chr14:74551617-74551697 1.0000 80 chr4:124451-124531 1.0000 80 chr16:30006872-30006952 1.0000 80 chr5:170814489-170814569 1.0000 80 chr19:49223971-49224051 1.0000 80 chr22:20046042-20046122 1.0000 80 chr19:13075966-13076046 1.0000 80 chr15:51057374-51057454 1.0000 80 chr4:86497452-86497532 1.0000 80 chr1:51434427-51434507 1.0000 80 chr4:24585158-24585238 1.0000 80 chr12:69201590-69201670 1.0000 80 chr16:90143947-90144027 1.0000 80 chr11:17297824-17297904 1.0000 80 chr9:35665153-35665233 1.0000 80 chr11:113535996-11353607 1.0000 80 chr20:5099994-5100074 1.0000 80 chr9:34049539-34049619 1.0000 80 chr6:27099761-27099841 1.0000 80 chr2:58468528-58468608 1.0000 80 chr1:207921538-207921618 1.0000 80 chr2:136634063-136634143 1.0000 80 chr19:47777104-47777184 1.0000 80 chr4:57302065-57302145 1.0000 80 chr14:64854760-64854840 1.0000 80 chr17:58677126-58677206 1.0000 80 chr16:88540385-88540465 1.0000 80 chr14:21777140-21777220 1.0000 80 chr11:116643261-11664334 1.0000 80 chr7:7680013-7680093 1.0000 80 chr22:35795896-35795976 1.0000 80 chr18:2302940-2303020 1.0000 80 chr13:42845986-42846066 1.0000 80 chr14:42066987-42067067 1.0000 80 chr6:153323947-153324027 1.0000 80 chr11:118955493-11895557 1.0000 80 chr15:49103399-49103479 1.0000 80 chr11:94226867-94226947 1.0000 80 chr12:49524551-49524631 1.0000 80 chr3:48229918-48229998 1.0000 80 chr6:32098208-32098288 1.0000 80 chr4:185654535-185654615 1.0000 80 chr7:99723676-99723756 1.0000 80 chr2:44769979-44770059 1.0000 80 chr1:156542294-156542374 1.0000 80 chr6:27862263-27862343 1.0000 80 chr20:17949666-17949746 1.0000 80 chr20:49347300-49347380 1.0000 80 chr10:102672662-10267274 1.0000 80 chr2:132250556-132250636 1.0000 80 chr19:46431103-46431183 1.0000 80 chr5:179050914-179050994 1.0000 80 chr10:17065460-17065540 1.0000 80 chr17:38574163-38574243 1.0000 80 chr1:46050418-46050498 1.0000 80 chr11:31832761-31832841 1.0000 80 chr12:56521779-56521859 1.0000 80 chr16:8891290-8891370 1.0000 80 chr1:117602717-117602797 1.0000 80 chr10:112424845-11242492 1.0000 80 chr19:12792199-12792279 1.0000 80 chr1:22111254-22111334 1.0000 80 chr1:155246950-155247030 1.0000 80 chr1:150336437-150336517 1.0000 80 chr11:7101110-7101190 1.0000 80 chr2:25016322-25016402 1.0000 80 chr14:20811887-20811967 1.0000 80 chr4:178230986-178231066 1.0000 80 chr1:225965746-225965826 1.0000 80 chr15:69706626-69706706 1.0000 80 chr17:7835533-7835613 1.0000 80 chr6:27799402-27799482 1.0000 80 chr18:8877068-8877148 1.0000 80 chr22:42342888-42342968 1.0000 80 chr19:16222096-16222176 1.0000 80 chr7:32720400-32720480 1.0000 80 chr9:5675161-5675241 1.0000 80 chr3:14361525-14361605 1.0000 80 chr16:30411897-30411977 1.0000 80 chr12:9600678-9600758 1.0000 80 chr3:14361325-14361405 1.0000 80 chr6:30685029-30685109 1.0000 80 chr13:34117053-34117133 1.0000 80 chr12:54611005-54611085 1.0000 80 chr17:27396625-27396705 1.0000 80 chr17:56085154-56085234 1.0000 80 chr4:103749328-103749408 1.0000 80 chr19:12998363-12998443 1.0000 80 chr6:17706185-17706265 1.0000 80 chr11:47236598-47236678 1.0000 80 chr11:58912216-58912296 1.0000 80 chr12:69753865-69753945 1.0000 80 chr13:37388873-37388953 1.0000 80 chr12:21654494-21654574 1.0000 80 chr3:194208141-194208221 1.0000 80 chr3:127317215-127317295 1.0000 80 chr19:44439689-44439769 1.0000 80 chr17:57232913-57232993 1.0000 80 chr12:56694489-56694569 1.0000 80 chr17:30263755-30263835 1.0000 80 chr15:41055528-41055608 1.0000 80 chr6:26250886-26250966 1.0000 80 chr22:41601154-41601234 1.0000 80 chr17:8091005-8091085 1.0000 80 chr3:45729794-45729874 1.0000 80 chr16:72106864-72106944 1.0000 80 chr22:50946666-50946746 1.0000 80 chr2:219433328-219433408 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_E2F1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/E2F1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.216 C 0.292 G 0.286 T 0.206 Background letter frequencies (from file dataset with add-one prior applied): A 0.216 C 0.292 G 0.286 T 0.206 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCCCGCC MEME-1 width = 8 sites = 105 llr = 884 E-value = 8.0e-095 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 21a9a:a8 probability G :::1:a:1 matrix T 89:::::1 bits 2.3 2.1 1.8 * * 1.6 ** *** Relative 1.4 ******* Entropy 1.1 ******* (12.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCCCGCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:219433328-219433408 2 2.58e-05 T TTCCCGCC GTTCACTGGC chr16:72106864-72106944 22 2.58e-05 gtaaacaacc ttcccgcc agtcgttatc chr19:44439689-44439769 54 2.58e-05 AGGGCTGAGC TTCCCGCC AGCCTGCAAT chr12:21654494-21654574 48 2.58e-05 GAGTAAAATC TTCCCGCC AGCCAGCTGA chr11:58912216-58912296 55 2.58e-05 CCTGCTCCGT TTCCCGCC CAGCTGGAGC chr6:17706185-17706265 53 2.58e-05 ACAATTTCTT TTCCCGCC CAGAGCCTGC chr17:56085154-56085234 1 2.58e-05 . TTCCCGCC CCTGCTGCGA chr1:225965746-225965826 16 2.58e-05 CCAGGATGTC TTCCCGCC ATCCACTCGG chr1:155246950-155247030 53 2.58e-05 GCGTCCGATT TTCCCGCC ACTGCAGGGG chr10:112424845-11242492 31 2.58e-05 ttcggtgatc ttcccgcc tcagcctcgc chr12:56521779-56521859 39 2.58e-05 TTTCTTCCTT TTCCCGCC ATCTCAGACC chr2:132250556-132250636 45 2.58e-05 AGAAGCGCTT TTCCCGCC CGGCCGCGGG chr4:185654535-185654615 18 2.58e-05 GCCGAGACCC TTCCCGCC AGATCCAGGC chr12:49524551-49524631 49 2.58e-05 CAGTGGCGGT TTCCCGCC CAGGAGCGGC chr11:118955493-11895557 53 2.58e-05 AATGTTCCAA TTCCCGCC CAGAGGGAGG chr14:42066987-42067067 54 2.58e-05 ccgccattta ttcccgcc atcccgacag chr14:64854760-64854840 48 2.58e-05 TCGGCCGGGT TTCCCGCC GAATACAAAG chr11:113535996-11353607 45 2.58e-05 gtaacggctc ttcccgcc aaagctgtct chr11:17297824-17297904 5 2.58e-05 AAGA TTCCCGCC AAGGCGGAGG chr14:74551617-74551697 18 2.58e-05 GAACCTCGTT TTCCCGCC GACGGTTGGC chr2:158866896-158866976 40 2.58e-05 TTGCATCCTC TTCCCGCC AACCATTAAC chr12:98910346-98910426 70 2.58e-05 AATGAGGAAA TTCCCGCC TTT chr11:74303586-74303666 49 2.58e-05 GCAAAGACGT TTCCCGCC GGCGGGAGCT chr1:40167532-40167612 54 2.58e-05 CCTCTCCAAC TTCCCGCC ATTTTTTCCC chr9:73035844-73035924 52 2.58e-05 CCGGCGCCGC TTCCCGCC CAGAGCAGCT chrX:118987068-118987148 24 2.58e-05 TGGTTTTTAC TTCCCGCC CGCCAAGTTC chr6:97730999-97731079 62 2.58e-05 ACAGGCGAAA TTCCCGCC ACCGCGCGCC chr2:128284363-128284443 46 2.58e-05 AGGCGCCTGG TTCCCGCC CGCAGTAGGC chr16:58270375-58270455 56 2.58e-05 gcgctctccc ttcccgcc ctcctgtctc chr4:88311381-88311461 24 2.58e-05 ccccgcgggg ttcccgcc attctcctgc chr12:6960398-6960478 57 2.58e-05 AGTTTCAAAC TTCCCGCC ACGCCCCCTG chr6:84686749-84686829 38 2.58e-05 ataaccattt ttcccgcc aaaccactca chr19:14492891-14492971 49 2.58e-05 GGGACTCCCT TTCCCGCC CCACCCAAGG chr2:12072497-12072577 51 2.58e-05 gcctgtgtgc ttcccgcc ttgcagattt chr19:47292095-47292175 1 2.58e-05 . TTCCCGCC AAAGGAACTG chr1:155197519-155197599 10 2.58e-05 CTCAGCGCT TTCCCGCC AGCACACCCT chr11:75863338-75863418 12 2.58e-05 GCGGGCCCCG TTCCCGCC ATTCCTTCCT chr4:99785847-99785927 24 2.58e-05 ataacctttt ttcccgcc aaccactcac chr17:60501109-60501189 63 2.58e-05 GCCACCCTTT TTCCCGCC CAGACTCCGC chr3:6560615-6560695 27 2.58e-05 acaatggccc ttcccgcc aaaattgtcc chr1:156368386-156368466 62 2.58e-05 gtaaccgtcc ttcccgcc aaaactactc chr12:92073356-92073436 46 2.58e-05 gcctcttcgg ttcccgcc attctcctgc chr5:159827001-159827081 68 2.58e-05 TCCAGGGTGC TTCCCGCC CGCAA chr15:96181529-96181609 11 2.58e-05 gcctcccggg ttcccgcc attctcctgc chr15:89787610-89787690 53 2.58e-05 GCCGCGGCGT TTCCCGCC GGCGGGGCTC chr21:23582195-23582275 39 2.58e-05 gcctcctggg ttcccgcc attcttccgc chr3:6549383-6549463 48 2.58e-05 gccccccggg ttcccgcc attctcccgc chr8:144627958-144628038 55 2.58e-05 atacccattt ttcccgcc aaaccactca chr17:57232913-57232993 18 6.23e-05 TTCCCCTTCT CTCCCGCC TTCTCCTTAT chr13:34117053-34117133 5 6.23e-05 CTTT CTCCCGCC CTGGACGGGG chr19:12792199-12792279 20 6.23e-05 AGGACAGAAA CTCCCGCC CAGAATAGGT chr1:156542294-156542374 53 6.23e-05 AGGTTTGAAT CTCCCGCC GTTGGGCCAC chr5:176739415-176739495 1 6.23e-05 . CTCCCGCC GCTGATCCAC chrX:100353034-100353114 21 6.23e-05 CGCGCGCCAC CTCCCGCC ACCGAGCCTC chr12:54673947-54674027 44 6.23e-05 CTAGGACAAA CTCCCGCC AACACGCAGG chr15:40397203-40397283 36 6.23e-05 ACTTCTCAGA CTCCCGCC AGAACTGCTT chr17:57232243-57232323 30 6.23e-05 CCCTCAGCAT CTCCCGCC ATTTCCCTGA chr1:12597465-12597545 21 6.23e-05 atagtcttat ctcccgcc tgaatttctg chr17:8113882-8113962 52 6.23e-05 CTTTTCAAAT CTCCCGCC CCGGCCCCAT chr10:135173751-13517383 53 6.23e-05 AAAAGAACAT CTCCCGCC TGTTTTAAGG chr6:74019488-74019568 6 6.23e-05 AGCTC CTCCCGCC ACCGCAGAGC chr6:37137507-37137587 40 6.23e-05 CTACACCCAG CTCCCGCC TCCCCTCACG chr19:16222096-16222176 59 8.75e-05 CTACCTTGCT TTCCCGCG CTCGCCTCGG chr10:17065460-17065540 22 8.75e-05 CTACAATTCA TTCCCGCG CAAATTGACC chr9:100685016-100685096 28 8.75e-05 CGACTCCGGC TTCCCGCG CTTTTTGAGA chr19:50832978-50833058 11 8.75e-05 ATGGAGGACT TTCCCGCG CAAGGGGGAC chr9:91933794-91933874 39 8.75e-05 TCTGGCGAGC TTCCCGCG CTCTTGGGAA chr20:1448468-1448548 26 8.75e-05 acaattgcca ttcccgcg gaaactcttc chr3:45729794-45729874 11 1.13e-04 CCGCAGACGT TTCGCGCC TTCTCGGGTG chr6:26250886-26250966 46 1.13e-04 ATCTTCCAGT TTCGCGCC CTGAATTATG chr12:69753865-69753945 27 1.13e-04 TGGGTTTCCT TTCGCGCC TTTTCTCCTC chr22:35795896-35795976 39 1.13e-04 AGCCAGAAGT TTCGCGCC AAATTGTTCC chr2:136634063-136634143 30 1.13e-04 AGCTGGAGAT TTCGCGCC AAACCTGACC chr6:27775871-27775951 31 1.13e-04 CAGCTTCCTT TTCGCGCC CAGTAGAGGC chr6:27520294-27520374 29 1.13e-04 gcctcccggg ttcgcgcc attttcctgg chr3:14361325-14361405 66 1.31e-04 ctgtttctct ttcccgct tgcctcc chr10:102672662-10267274 38 1.31e-04 CCCAGGTTCC TTCCCGCT CACGCCGGAG chr19:45909353-45909433 14 1.31e-04 CCCCCTATGT TTCCCGCT CCCCCGGAGT chr10:115614110-11561419 27 1.31e-04 CGGGAACAAG TTCCCGCT GCCAGTGCCG chr22:41601154-41601234 37 1.67e-04 GCCCGCGGCT TCCCCGCC CACAGGGAGA chr11:47236598-47236678 2 1.67e-04 G TCCCCGCC TTGTTTCTCC chr19:12998363-12998443 68 1.67e-04 TGGCACGAGC TCCCCGCC AAGCA chr22:42342888-42342968 14 1.67e-04 CTCCGCCTAT TCCCCGCC CCCGCCACGG chr18:2302940-2303020 69 1.67e-04 gtaaataact tccccgcc agtt chr4:120987908-120987988 52 1.67e-04 CAACAGCACT TCCCCGCC AAGCGTTTCA chr19:14529044-14529124 37 1.67e-04 GGCGGGGTTT TCCCCGCC CAAAGTGGGT chr16:90143947-90144027 55 2.03e-04 ATCTGGAATC CTCCCGCG CACAGGCGCA chr16:30006872-30006952 43 2.03e-04 GCATCTCCTT CTCCCGCG CCATTTTGCT chr6:153303396-153303476 56 2.03e-04 CGAGCGCGAT CTCCCGCG CCCGCCAGCA chr14:54863532-54863612 10 2.03e-04 AGGGCCCGC CTCCCGCG CGTCTTTCAA chr11:134093845-13409392 25 2.03e-04 TCAAAGCTCG CTCCCGCG CGCGCGCCGA chr6:153323947-153324027 35 2.57e-04 TGGCGGGAAC TTCCTGCC AAGCGTGAGA chr9:106856548-106856628 27 2.57e-04 GGGTCCTTTG CTCGCGCC GAAATTCAAA chr8:117887022-117887102 16 2.57e-04 GCCGCGGCTC TTCCTGCC GCCCAAATCC chr16:67281559-67281639 38 2.57e-04 AAAAACCGAG CTCGCGCC CCACCTTCGA chr3:127317215-127317295 42 3.08e-04 TGAACCACTT TTCGCGCG AAACCTGGTT chr13:37388873-37388953 10 3.08e-04 gaactttca ctcccgct caaaaacttg chr19:49223971-49224051 58 3.08e-04 CATTTCAAGG TTCGCGCG CTCGTTTGGT chr13:50656076-50656156 10 3.08e-04 ATCCTGTCT CTCCCGCT AGATTGATGA chr3:194208141-194208221 53 3.59e-04 gccaccctcg ccCCCGCC AAAACAAACA chr9:37465738-37465818 69 3.78e-04 GCTAGCGGGC TTTCCGCC TAAA chr6:30685029-30685109 3 4.31e-04 AG TCCCCGCG CGCGCCACCA chr6:27799402-27799482 15 5.28e-04 TCGGCGGGAA GTCCCGCC CCGGTGGGGG chr8:86019317-86019397 72 5.28e-04 GGCGGGAAAG TTCCCGGC T chr14:75530674-75530754 59 5.28e-04 CGCGCAAACC TCCGCGCC CGGAAGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:219433328-219433408 2.6e-05 1_[+1]_71 chr16:72106864-72106944 2.6e-05 21_[+1]_51 chr19:44439689-44439769 2.6e-05 53_[+1]_19 chr12:21654494-21654574 2.6e-05 47_[+1]_25 chr11:58912216-58912296 2.6e-05 54_[+1]_18 chr6:17706185-17706265 2.6e-05 52_[+1]_20 chr17:56085154-56085234 2.6e-05 [+1]_72 chr1:225965746-225965826 2.6e-05 15_[+1]_57 chr1:155246950-155247030 2.6e-05 52_[+1]_20 chr10:112424845-11242492 2.6e-05 30_[+1]_42 chr12:56521779-56521859 2.6e-05 38_[+1]_34 chr2:132250556-132250636 2.6e-05 44_[+1]_28 chr4:185654535-185654615 2.6e-05 17_[+1]_55 chr12:49524551-49524631 2.6e-05 48_[+1]_24 chr11:118955493-11895557 2.6e-05 52_[+1]_20 chr14:42066987-42067067 2.6e-05 53_[+1]_19 chr14:64854760-64854840 2.6e-05 47_[+1]_25 chr11:113535996-11353607 2.6e-05 44_[+1]_28 chr11:17297824-17297904 2.6e-05 4_[+1]_68 chr14:74551617-74551697 2.6e-05 17_[+1]_55 chr2:158866896-158866976 2.6e-05 39_[+1]_33 chr12:98910346-98910426 2.6e-05 69_[+1]_3 chr11:74303586-74303666 2.6e-05 48_[+1]_24 chr1:40167532-40167612 2.6e-05 53_[+1]_19 chr9:73035844-73035924 2.6e-05 51_[+1]_21 chrX:118987068-118987148 2.6e-05 23_[+1]_49 chr6:97730999-97731079 2.6e-05 61_[+1]_11 chr2:128284363-128284443 2.6e-05 45_[+1]_27 chr16:58270375-58270455 2.6e-05 55_[+1]_17 chr4:88311381-88311461 2.6e-05 23_[+1]_49 chr12:6960398-6960478 2.6e-05 56_[+1]_16 chr6:84686749-84686829 2.6e-05 37_[+1]_35 chr19:14492891-14492971 2.6e-05 48_[+1]_24 chr2:12072497-12072577 2.6e-05 50_[+1]_22 chr19:47292095-47292175 2.6e-05 [+1]_72 chr1:155197519-155197599 2.6e-05 9_[+1]_63 chr11:75863338-75863418 2.6e-05 11_[+1]_61 chr4:99785847-99785927 2.6e-05 23_[+1]_49 chr17:60501109-60501189 2.6e-05 62_[+1]_10 chr3:6560615-6560695 2.6e-05 26_[+1]_46 chr1:156368386-156368466 2.6e-05 61_[+1]_11 chr12:92073356-92073436 2.6e-05 45_[+1]_27 chr5:159827001-159827081 2.6e-05 67_[+1]_5 chr15:96181529-96181609 2.6e-05 10_[+1]_62 chr15:89787610-89787690 2.6e-05 52_[+1]_20 chr21:23582195-23582275 2.6e-05 38_[+1]_34 chr3:6549383-6549463 2.6e-05 47_[+1]_25 chr8:144627958-144628038 2.6e-05 54_[+1]_18 chr17:57232913-57232993 6.2e-05 17_[+1]_55 chr13:34117053-34117133 6.2e-05 4_[+1]_68 chr19:12792199-12792279 6.2e-05 19_[+1]_53 chr1:156542294-156542374 6.2e-05 52_[+1]_20 chr5:176739415-176739495 6.2e-05 [+1]_72 chrX:100353034-100353114 6.2e-05 20_[+1]_52 chr12:54673947-54674027 6.2e-05 43_[+1]_29 chr15:40397203-40397283 6.2e-05 35_[+1]_37 chr17:57232243-57232323 6.2e-05 29_[+1]_43 chr1:12597465-12597545 6.2e-05 20_[+1]_52 chr17:8113882-8113962 6.2e-05 51_[+1]_21 chr10:135173751-13517383 6.2e-05 52_[+1]_20 chr6:74019488-74019568 6.2e-05 5_[+1]_67 chr6:37137507-37137587 6.2e-05 39_[+1]_33 chr19:16222096-16222176 8.8e-05 58_[+1]_14 chr10:17065460-17065540 8.8e-05 21_[+1]_51 chr9:100685016-100685096 8.8e-05 27_[+1]_45 chr19:50832978-50833058 8.8e-05 10_[+1]_62 chr9:91933794-91933874 8.8e-05 38_[+1]_34 chr20:1448468-1448548 8.8e-05 25_[+1]_47 chr3:45729794-45729874 0.00011 10_[+1]_62 chr6:26250886-26250966 0.00011 45_[+1]_27 chr12:69753865-69753945 0.00011 26_[+1]_46 chr22:35795896-35795976 0.00011 38_[+1]_34 chr2:136634063-136634143 0.00011 29_[+1]_43 chr6:27775871-27775951 0.00011 30_[+1]_42 chr6:27520294-27520374 0.00011 28_[+1]_44 chr3:14361325-14361405 0.00013 65_[+1]_7 chr10:102672662-10267274 0.00013 37_[+1]_35 chr19:45909353-45909433 0.00013 13_[+1]_59 chr10:115614110-11561419 0.00013 26_[+1]_46 chr22:41601154-41601234 0.00017 36_[+1]_36 chr11:47236598-47236678 0.00017 1_[+1]_71 chr19:12998363-12998443 0.00017 67_[+1]_5 chr22:42342888-42342968 0.00017 13_[+1]_59 chr18:2302940-2303020 0.00017 68_[+1]_4 chr4:120987908-120987988 0.00017 51_[+1]_21 chr19:14529044-14529124 0.00017 36_[+1]_36 chr16:90143947-90144027 0.0002 54_[+1]_18 chr16:30006872-30006952 0.0002 42_[+1]_30 chr6:153303396-153303476 0.0002 55_[+1]_17 chr14:54863532-54863612 0.0002 9_[+1]_63 chr11:134093845-13409392 0.0002 24_[+1]_48 chr6:153323947-153324027 0.00026 34_[+1]_38 chr9:106856548-106856628 0.00026 26_[+1]_46 chr8:117887022-117887102 0.00026 15_[+1]_57 chr16:67281559-67281639 0.00026 37_[+1]_35 chr3:127317215-127317295 0.00031 41_[+1]_31 chr13:37388873-37388953 0.00031 9_[+1]_63 chr19:49223971-49224051 0.00031 57_[+1]_15 chr13:50656076-50656156 0.00031 9_[+1]_63 chr3:194208141-194208221 0.00036 52_[+1]_20 chr9:37465738-37465818 0.00038 68_[+1]_4 chr6:30685029-30685109 0.00043 2_[+1]_70 chr6:27799402-27799482 0.00053 14_[+1]_58 chr8:86019317-86019397 0.00053 71_[+1]_1 chr14:75530674-75530754 0.00053 58_[+1]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCCGCC width=8 seqs=105 chr2:219433328-219433408 ( 2) TTCCCGCC 1 chr16:72106864-72106944 ( 22) TTCCCGCC 1 chr19:44439689-44439769 ( 54) TTCCCGCC 1 chr12:21654494-21654574 ( 48) TTCCCGCC 1 chr11:58912216-58912296 ( 55) TTCCCGCC 1 chr6:17706185-17706265 ( 53) TTCCCGCC 1 chr17:56085154-56085234 ( 1) TTCCCGCC 1 chr1:225965746-225965826 ( 16) TTCCCGCC 1 chr1:155246950-155247030 ( 53) TTCCCGCC 1 chr10:112424845-11242492 ( 31) TTCCCGCC 1 chr12:56521779-56521859 ( 39) TTCCCGCC 1 chr2:132250556-132250636 ( 45) TTCCCGCC 1 chr4:185654535-185654615 ( 18) TTCCCGCC 1 chr12:49524551-49524631 ( 49) TTCCCGCC 1 chr11:118955493-11895557 ( 53) TTCCCGCC 1 chr14:42066987-42067067 ( 54) TTCCCGCC 1 chr14:64854760-64854840 ( 48) TTCCCGCC 1 chr11:113535996-11353607 ( 45) TTCCCGCC 1 chr11:17297824-17297904 ( 5) TTCCCGCC 1 chr14:74551617-74551697 ( 18) TTCCCGCC 1 chr2:158866896-158866976 ( 40) TTCCCGCC 1 chr12:98910346-98910426 ( 70) TTCCCGCC 1 chr11:74303586-74303666 ( 49) TTCCCGCC 1 chr1:40167532-40167612 ( 54) TTCCCGCC 1 chr9:73035844-73035924 ( 52) TTCCCGCC 1 chrX:118987068-118987148 ( 24) TTCCCGCC 1 chr6:97730999-97731079 ( 62) TTCCCGCC 1 chr2:128284363-128284443 ( 46) TTCCCGCC 1 chr16:58270375-58270455 ( 56) TTCCCGCC 1 chr4:88311381-88311461 ( 24) TTCCCGCC 1 chr12:6960398-6960478 ( 57) TTCCCGCC 1 chr6:84686749-84686829 ( 38) TTCCCGCC 1 chr19:14492891-14492971 ( 49) TTCCCGCC 1 chr2:12072497-12072577 ( 51) TTCCCGCC 1 chr19:47292095-47292175 ( 1) TTCCCGCC 1 chr1:155197519-155197599 ( 10) TTCCCGCC 1 chr11:75863338-75863418 ( 12) TTCCCGCC 1 chr4:99785847-99785927 ( 24) TTCCCGCC 1 chr17:60501109-60501189 ( 63) TTCCCGCC 1 chr3:6560615-6560695 ( 27) TTCCCGCC 1 chr1:156368386-156368466 ( 62) TTCCCGCC 1 chr12:92073356-92073436 ( 46) TTCCCGCC 1 chr5:159827001-159827081 ( 68) TTCCCGCC 1 chr15:96181529-96181609 ( 11) TTCCCGCC 1 chr15:89787610-89787690 ( 53) TTCCCGCC 1 chr21:23582195-23582275 ( 39) TTCCCGCC 1 chr3:6549383-6549463 ( 48) TTCCCGCC 1 chr8:144627958-144628038 ( 55) TTCCCGCC 1 chr17:57232913-57232993 ( 18) CTCCCGCC 1 chr13:34117053-34117133 ( 5) CTCCCGCC 1 chr19:12792199-12792279 ( 20) CTCCCGCC 1 chr1:156542294-156542374 ( 53) CTCCCGCC 1 chr5:176739415-176739495 ( 1) CTCCCGCC 1 chrX:100353034-100353114 ( 21) CTCCCGCC 1 chr12:54673947-54674027 ( 44) CTCCCGCC 1 chr15:40397203-40397283 ( 36) CTCCCGCC 1 chr17:57232243-57232323 ( 30) CTCCCGCC 1 chr1:12597465-12597545 ( 21) CTCCCGCC 1 chr17:8113882-8113962 ( 52) CTCCCGCC 1 chr10:135173751-13517383 ( 53) CTCCCGCC 1 chr6:74019488-74019568 ( 6) CTCCCGCC 1 chr6:37137507-37137587 ( 40) CTCCCGCC 1 chr19:16222096-16222176 ( 59) TTCCCGCG 1 chr10:17065460-17065540 ( 22) TTCCCGCG 1 chr9:100685016-100685096 ( 28) TTCCCGCG 1 chr19:50832978-50833058 ( 11) TTCCCGCG 1 chr9:91933794-91933874 ( 39) TTCCCGCG 1 chr20:1448468-1448548 ( 26) TTCCCGCG 1 chr3:45729794-45729874 ( 11) TTCGCGCC 1 chr6:26250886-26250966 ( 46) TTCGCGCC 1 chr12:69753865-69753945 ( 27) TTCGCGCC 1 chr22:35795896-35795976 ( 39) TTCGCGCC 1 chr2:136634063-136634143 ( 30) TTCGCGCC 1 chr6:27775871-27775951 ( 31) TTCGCGCC 1 chr6:27520294-27520374 ( 29) TTCGCGCC 1 chr3:14361325-14361405 ( 66) TTCCCGCT 1 chr10:102672662-10267274 ( 38) TTCCCGCT 1 chr19:45909353-45909433 ( 14) TTCCCGCT 1 chr10:115614110-11561419 ( 27) TTCCCGCT 1 chr22:41601154-41601234 ( 37) TCCCCGCC 1 chr11:47236598-47236678 ( 2) TCCCCGCC 1 chr19:12998363-12998443 ( 68) TCCCCGCC 1 chr22:42342888-42342968 ( 14) TCCCCGCC 1 chr18:2302940-2303020 ( 69) TCCCCGCC 1 chr4:120987908-120987988 ( 52) TCCCCGCC 1 chr19:14529044-14529124 ( 37) TCCCCGCC 1 chr16:90143947-90144027 ( 55) CTCCCGCG 1 chr16:30006872-30006952 ( 43) CTCCCGCG 1 chr6:153303396-153303476 ( 56) CTCCCGCG 1 chr14:54863532-54863612 ( 10) CTCCCGCG 1 chr11:134093845-13409392 ( 25) CTCCCGCG 1 chr6:153323947-153324027 ( 35) TTCCTGCC 1 chr9:106856548-106856628 ( 27) CTCGCGCC 1 chr8:117887022-117887102 ( 16) TTCCTGCC 1 chr16:67281559-67281639 ( 38) CTCGCGCC 1 chr3:127317215-127317295 ( 42) TTCGCGCG 1 chr13:37388873-37388953 ( 10) CTCCCGCT 1 chr19:49223971-49224051 ( 58) TTCGCGCG 1 chr13:50656076-50656156 ( 10) CTCCCGCT 1 chr3:194208141-194208221 ( 53) CCCCCGCC 1 chr9:37465738-37465818 ( 69) TTTCCGCC 1 chr6:30685029-30685109 ( 3) TCCCCGCG 1 chr6:27799402-27799482 ( 15) GTCCCGCC 1 chr8:86019317-86019397 ( 72) TTCCCGGC 1 chr14:75530674-75530754 ( 59) TCCGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.97596 E= 8.0e-095 -1336 -36 -490 189 -1336 -162 -1336 214 -1336 176 -1336 -443 -1336 160 -132 -1336 -1336 175 -1336 -343 -1336 -1336 181 -1336 -1336 176 -490 -1336 -1336 147 -110 -185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 8.0e-095 0.000000 0.228571 0.009524 0.761905 0.000000 0.095238 0.000000 0.904762 0.000000 0.990476 0.000000 0.009524 0.000000 0.885714 0.114286 0.000000 0.000000 0.980952 0.000000 0.019048 0.000000 0.000000 1.000000 0.000000 0.000000 0.990476 0.009524 0.000000 0.000000 0.809524 0.133333 0.057143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCCGCC MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TCCCGCC -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGGAA MEME-2 width = 8 sites = 77 llr = 703 E-value = 3.0e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a8 pos.-specific C ::a:1::: probability G 9a:a9a:2 matrix T :::::::: bits 2.3 * 2.1 * 1.8 * * * 1.6 *** *** Relative 1.4 ******** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:27396625-27396705 54 2.61e-05 CCCTTAAAAG GGCGGGAA ACATTATTTC chr9:5675161-5675241 57 2.61e-05 cgagtggttt ggcgggaa aaatggttat chr18:8877068-8877148 41 2.61e-05 tgactgcttt ggcgggaa aaaaatggtt chr6:27799402-27799482 7 2.61e-05 GAAGTC GGCGGGAA GTCCCGCCCC chr2:25016322-25016402 23 2.61e-05 AGACGTGGAT GGCGGGAA TTCTCGCTTC chr11:7101110-7101190 23 2.61e-05 cggttacact ggcgggaa ggcaggaaga chr1:46050418-46050498 23 2.61e-05 GCCTTGAGGA GGCGGGAA AACTCCATTG chr20:49347300-49347380 29 2.61e-05 CCGCTGCAGA GGCGGGAA AACTTGAATT chr7:99723676-99723756 47 2.61e-05 gcagaagaat ggcgggaa cccgggaggc chr12:49524551-49524631 64 2.61e-05 GCCCAGGAGC GGCGGGAA GGTAACGGT chr15:49103399-49103479 63 2.61e-05 CGCCAGAGGT GGCGGGAA GCTCCCCCTG chr6:153323947-153324027 26 2.61e-05 CGGAAGCCTT GGCGGGAA CTTCCTGCCA chr7:7680013-7680093 60 2.61e-05 GACTGCGGCT GGCGGGAA ACCCACGGAC chr11:116643261-11664334 19 2.61e-05 AGTCTACCAA GGCGGGAA AAGAGTAATC chr14:21777140-21777220 22 2.61e-05 ggaagacaag ggcgggaa tcgccatgtt chr2:58468528-58468608 24 2.61e-05 CCCCAGCCTT GGCGGGAA GATCCTGGAG chr12:69201590-69201670 71 2.61e-05 TTCCACCGCG GGCGGGAA GT chr15:51057374-51057454 58 2.61e-05 GACTTCAATG GGCGGGAA CCgagtgggg chr19:13262737-13262817 17 2.61e-05 GGGCGCTGGT GGCGGGAA GGCGCCGCGA chr5:176739415-176739495 26 2.61e-05 CACACGTTCG GGCGGGAA AAGAAGCAGG chr11:13485224-13485304 63 2.61e-05 ACGCTCGGTT GGCGGGAA CCCCTGTGCC chr8:124084718-124084798 16 2.61e-05 TGGGTCCGGG GGCGGGAA GACTGAGCTC chr19:53238263-53238343 72 2.61e-05 GCCAGGCCTG GGCGGGAA G chr2:130939172-130939252 35 2.61e-05 CCCGCGGCCG GGCGGGAA AAGCGCTTCC chr5:112312228-112312308 24 2.61e-05 CCTCAAAGGC GGCGGGAA GTTGGTTTTC chr12:39932568-39932648 21 2.61e-05 gaagagagcc ggcgggaa gacacctacc chr19:47290061-47290141 69 2.61e-05 AGCTGAAATG GGCGGGAA GCGG chr8:86019317-86019397 62 2.61e-05 TCACCGTCAA GGCGGGAA AGTTCCCGGC chr4:174255764-174255844 33 2.61e-05 CCTGATTGGC GGCGGGAA GAGGGTTTGA chr14:50065673-50065753 10 2.61e-05 GCGCCGGGT GGCGGGAA GGAGGAAGTT chrX:48138494-48138574 20 2.61e-05 GGATGCTTTA GGCGGGAA AATCAGAGTC chr15:48624332-48624412 19 2.61e-05 GGGCGGGGCT GGCGGGAA ATTTCGGTTT chr20:23117573-23117653 35 2.61e-05 CTCGCGGGCA GGCGGGAA ACCGACACCG chr18:658393-658473 24 2.61e-05 GGGCAAAGGC GGCGGGAA GAGGAGAGCA chr19:40336342-40336422 28 2.61e-05 AAGTGCAGAA GGCGGGAA AGTGAGCCGA chr13:39612437-39612517 56 2.61e-05 CTGCCCTGAG GGCGGGAA AGGGTGGTCA chr16:67281559-67281639 22 2.61e-05 TGGCTAGGAG GGCGGGAA AAACCGAGCT chr9:86595672-86595752 27 2.61e-05 CGGCAAATCG GGCGGGAA GAGGTAAAAA chr6:74019488-74019568 29 2.61e-05 AGAGCCCGCC GGCGGGAA GAGACCAGAC chr1:32908154-32908234 28 2.61e-05 tgagtggctt ggcgggaa aatggttttg chr6:90539438-90539518 49 2.61e-05 CCCTTCCAAA GGCGGGAA CTAGTTGTGG chr7:138124151-138124231 29 2.61e-05 agagtggttt ggcgggaa aaatggttat chr2:242823386-242823466 63 2.61e-05 CAGATGAGCG GGCGGGAA AACTAGCGGG chr10:115614110-11561419 15 2.61e-05 TTAGGGTCTT GGCGGGAA CAAGTTCCCG chr1:1446529-1446609 16 2.61e-05 tgagtggttt ggcgggaa aaatggttat chr12:4647996-4648076 38 2.61e-05 TCTGGTTTTG GGCGGGAA TTGAAACCGC chr15:44119196-44119276 1 2.61e-05 . GGCGGGAA GGCGCCGGCC chr22:41601154-41601234 59 6.06e-05 GGGAGAGAAT GGCGGGAG CAGGCACGGA chr15:69706626-69706706 21 6.06e-05 AAATGCGCCA GGCGGGAG CTCACCTGGG chr2:44769979-44770059 50 6.06e-05 TAGGTCAGAT GGCGGGAG ATCCTGGGTG chr4:24585158-24585238 24 6.06e-05 TACAGGAGAT GGCGGGAG CGTAGGCAGA chr22:20046042-20046122 26 6.06e-05 gggaggctga ggcgggag aatggcgtga chr5:170814489-170814569 38 6.06e-05 GCAGACTCTT GGCGGGAG GCCGGCGCGC chr6:153303396-153303476 31 6.06e-05 ACGCGGAGGA GGCGGGAG ATAACCGCGA chrX:69509950-69510030 9 6.06e-05 GACAGGGC GGCGGGAG GCCCAGGGAG chr15:85523640-85523720 45 6.06e-05 GCCGGGCCAA GGCGGGAG CGGCTGCCTC chr11:74303586-74303666 57 6.06e-05 GTTTCCCGCC GGCGGGAG CTGTGGCTGT chr13:31040202-31040282 54 6.06e-05 AAGAGGCTGA GGCGGGAG AGGCAGAGGC chrX:123095800-123095880 26 6.06e-05 AGGGGGGAAG GGCGGGAG TGGAAGGCTG chr1:144886691-144886771 51 6.06e-05 AGTCCTGGAT GGCGGGAG ATGATGGCTT chr20:5099994-5100074 24 8.72e-05 TTGTGACTTT GGCGCGAA AAAGCAGGTT chr4:86497452-86497532 45 8.72e-05 gcaggaaaat ggcgcgaa cccgggaggc chr15:51895934-51896014 45 8.72e-05 gcaggagaat ggcgcgaa cccgggaggc chr8:127304986-127305066 69 8.72e-05 gcaggaaaat ggcgcgaa cccg chr6:153197077-153197157 45 8.72e-05 gcaggaaaat ggcgcgaa cccgggaggc chr12:54611005-54611085 37 1.07e-04 AAAAAAAAAA AGCGGGAA AAAAAACAAG chr11:31832761-31832841 48 1.07e-04 CCTGAACCAG AGCGGGAA ATGAGGCCGA chr7:14030717-14030797 44 1.07e-04 AAGCATTTTG AGCGGGAA CTGCATTTTA chr19:46431103-46431183 60 1.34e-04 caggtgcctc cgcgggaa gcttgaaTTT chr9:34049539-34049619 23 1.34e-04 CTGCCCCCTG CGCGGGAA AACGCCAACG chrX:48659798-48659878 19 1.34e-04 CGGCGCGTCG CGCGGGAA GTCGCGGGGA chr19:48867498-48867578 36 1.53e-04 CTCCTGAGTA GGCGGAAA GAGGGAGGGG chr12:12849072-12849152 41 1.53e-04 CCTCTCACTA GGCGGAAA GTTTTGAAAC chr15:41055528-41055608 15 2.29e-04 GAAGCTCAGG GGAGGGAA GGCCAGGTTC chr11:17297824-17297904 54 2.29e-04 GAGGCCTGTG GGCGAGAA TAGGCCTGAC chr16:58270375-58270455 17 2.29e-04 ccaaaactgg ggtgggaa agcggagaag chr19:45909353-45909433 49 2.29e-04 CCCCGCCCCT GGCTGGAA CTTCACGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:27396625-27396705 2.6e-05 53_[+2]_19 chr9:5675161-5675241 2.6e-05 56_[+2]_16 chr18:8877068-8877148 2.6e-05 40_[+2]_32 chr6:27799402-27799482 2.6e-05 6_[+2]_66 chr2:25016322-25016402 2.6e-05 22_[+2]_50 chr11:7101110-7101190 2.6e-05 22_[+2]_50 chr1:46050418-46050498 2.6e-05 22_[+2]_50 chr20:49347300-49347380 2.6e-05 28_[+2]_44 chr7:99723676-99723756 2.6e-05 46_[+2]_26 chr12:49524551-49524631 2.6e-05 63_[+2]_9 chr15:49103399-49103479 2.6e-05 62_[+2]_10 chr6:153323947-153324027 2.6e-05 25_[+2]_47 chr7:7680013-7680093 2.6e-05 59_[+2]_13 chr11:116643261-11664334 2.6e-05 18_[+2]_54 chr14:21777140-21777220 2.6e-05 21_[+2]_51 chr2:58468528-58468608 2.6e-05 23_[+2]_49 chr12:69201590-69201670 2.6e-05 70_[+2]_2 chr15:51057374-51057454 2.6e-05 57_[+2]_15 chr19:13262737-13262817 2.6e-05 16_[+2]_56 chr5:176739415-176739495 2.6e-05 25_[+2]_47 chr11:13485224-13485304 2.6e-05 62_[+2]_10 chr8:124084718-124084798 2.6e-05 15_[+2]_57 chr19:53238263-53238343 2.6e-05 71_[+2]_1 chr2:130939172-130939252 2.6e-05 34_[+2]_38 chr5:112312228-112312308 2.6e-05 23_[+2]_49 chr12:39932568-39932648 2.6e-05 20_[+2]_52 chr19:47290061-47290141 2.6e-05 68_[+2]_4 chr8:86019317-86019397 2.6e-05 61_[+2]_11 chr4:174255764-174255844 2.6e-05 32_[+2]_40 chr14:50065673-50065753 2.6e-05 9_[+2]_63 chrX:48138494-48138574 2.6e-05 19_[+2]_53 chr15:48624332-48624412 2.6e-05 18_[+2]_54 chr20:23117573-23117653 2.6e-05 34_[+2]_38 chr18:658393-658473 2.6e-05 23_[+2]_49 chr19:40336342-40336422 2.6e-05 27_[+2]_45 chr13:39612437-39612517 2.6e-05 55_[+2]_17 chr16:67281559-67281639 2.6e-05 21_[+2]_51 chr9:86595672-86595752 2.6e-05 26_[+2]_46 chr6:74019488-74019568 2.6e-05 28_[+2]_44 chr1:32908154-32908234 2.6e-05 27_[+2]_45 chr6:90539438-90539518 2.6e-05 48_[+2]_24 chr7:138124151-138124231 2.6e-05 28_[+2]_44 chr2:242823386-242823466 2.6e-05 62_[+2]_10 chr10:115614110-11561419 2.6e-05 14_[+2]_58 chr1:1446529-1446609 2.6e-05 15_[+2]_57 chr12:4647996-4648076 2.6e-05 37_[+2]_35 chr15:44119196-44119276 2.6e-05 [+2]_72 chr22:41601154-41601234 6.1e-05 58_[+2]_14 chr15:69706626-69706706 6.1e-05 20_[+2]_52 chr2:44769979-44770059 6.1e-05 49_[+2]_23 chr4:24585158-24585238 6.1e-05 23_[+2]_49 chr22:20046042-20046122 6.1e-05 25_[+2]_47 chr5:170814489-170814569 6.1e-05 37_[+2]_35 chr6:153303396-153303476 6.1e-05 30_[+2]_42 chrX:69509950-69510030 6.1e-05 8_[+2]_64 chr15:85523640-85523720 6.1e-05 44_[+2]_28 chr11:74303586-74303666 6.1e-05 56_[+2]_16 chr13:31040202-31040282 6.1e-05 53_[+2]_19 chrX:123095800-123095880 6.1e-05 25_[+2]_47 chr1:144886691-144886771 6.1e-05 50_[+2]_22 chr20:5099994-5100074 8.7e-05 23_[+2]_49 chr4:86497452-86497532 8.7e-05 44_[+2]_28 chr15:51895934-51896014 8.7e-05 44_[+2]_28 chr8:127304986-127305066 8.7e-05 68_[+2]_4 chr6:153197077-153197157 8.7e-05 44_[+2]_28 chr12:54611005-54611085 0.00011 36_[+2]_36 chr11:31832761-31832841 0.00011 47_[+2]_25 chr7:14030717-14030797 0.00011 43_[+2]_29 chr19:46431103-46431183 0.00013 59_[+2]_13 chr9:34049539-34049619 0.00013 22_[+2]_50 chrX:48659798-48659878 0.00013 18_[+2]_54 chr19:48867498-48867578 0.00015 35_[+2]_37 chr12:12849072-12849152 0.00015 40_[+2]_32 chr15:41055528-41055608 0.00023 14_[+2]_58 chr11:17297824-17297904 0.00023 53_[+2]_19 chr16:58270375-58270455 0.00023 16_[+2]_56 chr19:45909353-45909433 0.00023 48_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGGAA width=8 seqs=77 chr17:27396625-27396705 ( 54) GGCGGGAA 1 chr9:5675161-5675241 ( 57) GGCGGGAA 1 chr18:8877068-8877148 ( 41) GGCGGGAA 1 chr6:27799402-27799482 ( 7) GGCGGGAA 1 chr2:25016322-25016402 ( 23) GGCGGGAA 1 chr11:7101110-7101190 ( 23) GGCGGGAA 1 chr1:46050418-46050498 ( 23) GGCGGGAA 1 chr20:49347300-49347380 ( 29) GGCGGGAA 1 chr7:99723676-99723756 ( 47) GGCGGGAA 1 chr12:49524551-49524631 ( 64) GGCGGGAA 1 chr15:49103399-49103479 ( 63) GGCGGGAA 1 chr6:153323947-153324027 ( 26) GGCGGGAA 1 chr7:7680013-7680093 ( 60) GGCGGGAA 1 chr11:116643261-11664334 ( 19) GGCGGGAA 1 chr14:21777140-21777220 ( 22) GGCGGGAA 1 chr2:58468528-58468608 ( 24) GGCGGGAA 1 chr12:69201590-69201670 ( 71) GGCGGGAA 1 chr15:51057374-51057454 ( 58) GGCGGGAA 1 chr19:13262737-13262817 ( 17) GGCGGGAA 1 chr5:176739415-176739495 ( 26) GGCGGGAA 1 chr11:13485224-13485304 ( 63) GGCGGGAA 1 chr8:124084718-124084798 ( 16) GGCGGGAA 1 chr19:53238263-53238343 ( 72) GGCGGGAA 1 chr2:130939172-130939252 ( 35) GGCGGGAA 1 chr5:112312228-112312308 ( 24) GGCGGGAA 1 chr12:39932568-39932648 ( 21) GGCGGGAA 1 chr19:47290061-47290141 ( 69) GGCGGGAA 1 chr8:86019317-86019397 ( 62) GGCGGGAA 1 chr4:174255764-174255844 ( 33) GGCGGGAA 1 chr14:50065673-50065753 ( 10) GGCGGGAA 1 chrX:48138494-48138574 ( 20) GGCGGGAA 1 chr15:48624332-48624412 ( 19) GGCGGGAA 1 chr20:23117573-23117653 ( 35) GGCGGGAA 1 chr18:658393-658473 ( 24) GGCGGGAA 1 chr19:40336342-40336422 ( 28) GGCGGGAA 1 chr13:39612437-39612517 ( 56) GGCGGGAA 1 chr16:67281559-67281639 ( 22) GGCGGGAA 1 chr9:86595672-86595752 ( 27) GGCGGGAA 1 chr6:74019488-74019568 ( 29) GGCGGGAA 1 chr1:32908154-32908234 ( 28) GGCGGGAA 1 chr6:90539438-90539518 ( 49) GGCGGGAA 1 chr7:138124151-138124231 ( 29) GGCGGGAA 1 chr2:242823386-242823466 ( 63) GGCGGGAA 1 chr10:115614110-11561419 ( 15) GGCGGGAA 1 chr1:1446529-1446609 ( 16) GGCGGGAA 1 chr12:4647996-4648076 ( 38) GGCGGGAA 1 chr15:44119196-44119276 ( 1) GGCGGGAA 1 chr22:41601154-41601234 ( 59) GGCGGGAG 1 chr15:69706626-69706706 ( 21) GGCGGGAG 1 chr2:44769979-44770059 ( 50) GGCGGGAG 1 chr4:24585158-24585238 ( 24) GGCGGGAG 1 chr22:20046042-20046122 ( 26) GGCGGGAG 1 chr5:170814489-170814569 ( 38) GGCGGGAG 1 chr6:153303396-153303476 ( 31) GGCGGGAG 1 chrX:69509950-69510030 ( 9) GGCGGGAG 1 chr15:85523640-85523720 ( 45) GGCGGGAG 1 chr11:74303586-74303666 ( 57) GGCGGGAG 1 chr13:31040202-31040282 ( 54) GGCGGGAG 1 chrX:123095800-123095880 ( 26) GGCGGGAG 1 chr1:144886691-144886771 ( 51) GGCGGGAG 1 chr20:5099994-5100074 ( 24) GGCGCGAA 1 chr4:86497452-86497532 ( 45) GGCGCGAA 1 chr15:51895934-51896014 ( 45) GGCGCGAA 1 chr8:127304986-127305066 ( 69) GGCGCGAA 1 chr6:153197077-153197157 ( 45) GGCGCGAA 1 chr12:54611005-54611085 ( 37) AGCGGGAA 1 chr11:31832761-31832841 ( 48) AGCGGGAA 1 chr7:14030717-14030797 ( 44) AGCGGGAA 1 chr19:46431103-46431183 ( 60) CGCGGGAA 1 chr9:34049539-34049619 ( 23) CGCGGGAA 1 chrX:48659798-48659878 ( 19) CGCGGGAA 1 chr19:48867498-48867578 ( 36) GGCGGAAA 1 chr12:12849072-12849152 ( 41) GGCGGAAA 1 chr15:41055528-41055608 ( 15) GGAGGGAA 1 chr11:17297824-17297904 ( 54) GGCGAGAA 1 chr16:58270375-58270455 ( 17) GGTGGGAA 1 chr19:45909353-45909433 ( 49) GGCTGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.79481 E= 3.0e-077 -247 -291 169 -1291 -1291 -1291 181 -1291 -405 174 -1291 -398 -1291 -1291 179 -398 -405 -217 169 -1291 -305 -1291 177 -1291 221 -1291 -1291 -1291 194 -1291 -76 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 3.0e-077 0.038961 0.038961 0.922078 0.000000 0.000000 0.000000 1.000000 0.000000 0.012987 0.974026 0.000000 0.012987 0.000000 0.000000 0.987013 0.012987 0.012987 0.064935 0.922078 0.000000 0.025974 0.000000 0.974026 0.000000 1.000000 0.000000 0.000000 0.000000 0.831169 0.000000 0.168831 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGAA MEME-2 regular expression -------------------------------------------------------------------------------- GGCGGGAA -------------------------------------------------------------------------------- Time 8.61 secs. ******************************************************************************** ******************************************************************************** MOTIF DTTTYAAA MEME-3 width = 8 sites = 41 llr = 358 E-value = 3.5e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 33:::aaa pos.-specific C 11::5::: probability G 3:::2::: matrix T 37aa3::: bits 2.3 * *** 2.1 ** *** 1.8 ** *** 1.6 ** *** Relative 1.4 ** *** Entropy 1.1 *** *** (12.6 bits) 0.9 *** *** 0.7 *** *** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTTTCAAA consensus GA T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:17065460-17065540 70 9.04e-06 GAACAGTCAT TTTTCAAA GTA chr1:51434427-51434507 17 9.04e-06 AATTTTTTTC TTTTCAAA AAAAGCTGAT chr11:13485224-13485304 46 9.04e-06 CCGCTGCTTA TTTTTAAA CGCTCGGTTG chr6:26197742-26197822 52 9.04e-06 TCTTAATTTT TTTTTAAA TGTTGGCGCT chr11:9595095-9595175 51 9.04e-06 CCTCCTTTTT TTTTCAAA CCCGGAGCTG chr10:94352852-94352932 5 9.04e-06 CTCT TTTTCAAA TTGAGGCGCC chr17:8113882-8113962 43 9.04e-06 GGCCAAGGAC TTTTCAAA TCTCCCGCCC chr17:34257740-34257820 62 9.04e-06 CGCCCGCGCT TTTTTAAA AAGAGGCGCA chr18:2302940-2303020 8 1.85e-05 attctcc attttaaa ctttaacttt chr5:176739415-176739495 43 3.11e-05 AAAGAAGCAG GTTTCAAA TTTGAAAACC chr4:120987908-120987988 64 3.11e-05 CCCGCCAAGC GTTTCAAA AGTAACGAC chr12:6960398-6960478 48 3.11e-05 GAAGTTACCA GTTTCAAA CTTCCCGCCA chr14:50065673-50065753 25 3.11e-05 GAAGGAGGAA GTTTCAAA GCCAGCTTGA chr9:91933794-91933874 67 3.11e-05 CGGATAGATT GTTTTAAA GGATCC chr15:30918216-30918296 23 3.63e-05 GGGGTCCTGA TTTTGAAA AGAGGAGTGG chrX:133931362-133931442 25 3.63e-05 TGGCGCCCAA TTTTGAAA AGAACCAATA chr12:12849072-12849152 50 3.63e-05 AGGCGGAAAG TTTTGAAA CTTTTGCGCG chr6:27862263-27862343 10 5.12e-05 CAACGCTCT ATTTGAAA AGCCCGCCAA chr12:98910346-98910426 54 5.12e-05 TCTAACCAAA ATTTGAAA TGAGGAAATT chr9:5675161-5675241 26 6.11e-05 ccgattggct aatttaaa gagagtgact chr18:8877068-8877148 12 6.11e-05 ctgattggct aatttaaa gagagtgatg chr6:27099761-27099841 36 6.11e-05 TGCCCGGGCA AATTCAAA CTGACAACCG chr9:106856548-106856628 37 6.11e-05 CTCGCGCCGA AATTCAAA GGAATAAATA chr1:12597465-12597545 45 6.11e-05 tctgccctga aattcaaa ctcagagctc chr17:71187801-71187881 38 6.11e-05 gcgagccagt aatttaaa aatcgacgtc chr19:44259741-44259821 33 6.11e-05 CAGGGTCGAA AATTTAAA CACACGTGGG chr15:69706626-69706706 6 6.83e-05 GGCCC GTTTGAAA TGCGCCAGGC chr15:49103399-49103479 40 6.83e-05 AAGTACGGCT GTTTGAAA GCGGGCGCCA chr4:174255764-174255844 45 6.83e-05 CGGGAAGAGG GTTTGAAA AATGGCGGGC chr11:58912216-58912296 25 8.15e-05 AAAGGCGGGC GATTCAAA CCCCTAGCCC chr9:35665153-35665233 57 8.15e-05 GTCCGCGGCA GATTCAAA TCCCAACCGC chr11:118966370-11896645 63 8.15e-05 AAGCGCGCGA GATTTAAA CACTACAATC chr14:54863532-54863612 21 9.43e-05 TCCCGCGCGT CTTTCAAA GGTCTTCTAG chr8:27695294-27695374 36 9.43e-05 ACCCTCCTGG CTTTCAAA AAGTCGCGCG chr11:134093845-13409392 12 9.43e-05 CCGTGCTCAA CTTTCAAA GCTCGCTCCC chr6:84686749-84686829 73 1.47e-04 cccctcactc tctttaaa chr13:50656076-50656156 73 1.47e-04 TGAGGCTCCT CATTCAAA chr4:99785847-99785927 52 1.47e-04 cccctcactc tctttaaa ttagctaatc chr6:26250886-26250966 3 1.87e-04 TA TTTATAAA GGCAAAGTCC chr1:51443114-51443194 32 1.87e-04 GGGTGGGGGA GCTTCAAA ACCGTTAGCT chr14:51706612-51706692 23 1.97e-04 GCTTTAGCAC ATTATAAA CTTACCAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:17065460-17065540 9e-06 69_[+3]_3 chr1:51434427-51434507 9e-06 16_[+3]_56 chr11:13485224-13485304 9e-06 45_[+3]_27 chr6:26197742-26197822 9e-06 51_[+3]_21 chr11:9595095-9595175 9e-06 50_[+3]_22 chr10:94352852-94352932 9e-06 4_[+3]_68 chr17:8113882-8113962 9e-06 42_[+3]_30 chr17:34257740-34257820 9e-06 61_[+3]_11 chr18:2302940-2303020 1.9e-05 7_[+3]_65 chr5:176739415-176739495 3.1e-05 42_[+3]_30 chr4:120987908-120987988 3.1e-05 63_[+3]_9 chr12:6960398-6960478 3.1e-05 47_[+3]_25 chr14:50065673-50065753 3.1e-05 24_[+3]_48 chr9:91933794-91933874 3.1e-05 66_[+3]_6 chr15:30918216-30918296 3.6e-05 22_[+3]_50 chrX:133931362-133931442 3.6e-05 24_[+3]_48 chr12:12849072-12849152 3.6e-05 49_[+3]_23 chr6:27862263-27862343 5.1e-05 9_[+3]_63 chr12:98910346-98910426 5.1e-05 53_[+3]_19 chr9:5675161-5675241 6.1e-05 25_[+3]_47 chr18:8877068-8877148 6.1e-05 11_[+3]_61 chr6:27099761-27099841 6.1e-05 35_[+3]_37 chr9:106856548-106856628 6.1e-05 36_[+3]_36 chr1:12597465-12597545 6.1e-05 44_[+3]_28 chr17:71187801-71187881 6.1e-05 37_[+3]_35 chr19:44259741-44259821 6.1e-05 32_[+3]_40 chr15:69706626-69706706 6.8e-05 5_[+3]_67 chr15:49103399-49103479 6.8e-05 39_[+3]_33 chr4:174255764-174255844 6.8e-05 44_[+3]_28 chr11:58912216-58912296 8.1e-05 24_[+3]_48 chr9:35665153-35665233 8.1e-05 56_[+3]_16 chr11:118966370-11896645 8.1e-05 62_[+3]_10 chr14:54863532-54863612 9.4e-05 20_[+3]_52 chr8:27695294-27695374 9.4e-05 35_[+3]_37 chr11:134093845-13409392 9.4e-05 11_[+3]_61 chr6:84686749-84686829 0.00015 72_[+3] chr13:50656076-50656156 0.00015 72_[+3] chr4:99785847-99785927 0.00015 51_[+3]_21 chr6:26250886-26250966 0.00019 2_[+3]_70 chr1:51443114-51443194 0.00019 31_[+3]_41 chr14:51706612-51706692 0.0002 22_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTTTYAAA width=8 seqs=41 chr10:17065460-17065540 ( 70) TTTTCAAA 1 chr1:51434427-51434507 ( 17) TTTTCAAA 1 chr11:13485224-13485304 ( 46) TTTTTAAA 1 chr6:26197742-26197822 ( 52) TTTTTAAA 1 chr11:9595095-9595175 ( 51) TTTTCAAA 1 chr10:94352852-94352932 ( 5) TTTTCAAA 1 chr17:8113882-8113962 ( 43) TTTTCAAA 1 chr17:34257740-34257820 ( 62) TTTTTAAA 1 chr18:2302940-2303020 ( 8) ATTTTAAA 1 chr5:176739415-176739495 ( 43) GTTTCAAA 1 chr4:120987908-120987988 ( 64) GTTTCAAA 1 chr12:6960398-6960478 ( 48) GTTTCAAA 1 chr14:50065673-50065753 ( 25) GTTTCAAA 1 chr9:91933794-91933874 ( 67) GTTTTAAA 1 chr15:30918216-30918296 ( 23) TTTTGAAA 1 chrX:133931362-133931442 ( 25) TTTTGAAA 1 chr12:12849072-12849152 ( 50) TTTTGAAA 1 chr6:27862263-27862343 ( 10) ATTTGAAA 1 chr12:98910346-98910426 ( 54) ATTTGAAA 1 chr9:5675161-5675241 ( 26) AATTTAAA 1 chr18:8877068-8877148 ( 12) AATTTAAA 1 chr6:27099761-27099841 ( 36) AATTCAAA 1 chr9:106856548-106856628 ( 37) AATTCAAA 1 chr1:12597465-12597545 ( 45) AATTCAAA 1 chr17:71187801-71187881 ( 38) AATTTAAA 1 chr19:44259741-44259821 ( 33) AATTTAAA 1 chr15:69706626-69706706 ( 6) GTTTGAAA 1 chr15:49103399-49103479 ( 40) GTTTGAAA 1 chr4:174255764-174255844 ( 45) GTTTGAAA 1 chr11:58912216-58912296 ( 25) GATTCAAA 1 chr9:35665153-35665233 ( 57) GATTCAAA 1 chr11:118966370-11896645 ( 63) GATTTAAA 1 chr14:54863532-54863612 ( 21) CTTTCAAA 1 chr8:27695294-27695374 ( 36) CTTTCAAA 1 chr11:134093845-13409392 ( 12) CTTTCAAA 1 chr6:84686749-84686829 ( 73) TCTTTAAA 1 chr13:50656076-50656156 ( 73) CATTCAAA 1 chr4:99785847-99785927 ( 52) TCTTTAAA 1 chr6:26250886-26250966 ( 3) TTTATAAA 1 chr1:51443114-51443194 ( 32) GCTTCAAA 1 chr14:51706612-51706692 ( 23) ATTATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 3.5e-016 31 -158 3 73 31 -200 -1200 168 -1200 -1200 -1200 228 -214 -1200 -1200 221 -1200 66 -55 73 221 -1200 -1200 -1200 221 -1200 -1200 -1200 221 -1200 -1200 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 3.5e-016 0.268293 0.097561 0.292683 0.341463 0.268293 0.073171 0.000000 0.658537 0.000000 0.000000 0.000000 1.000000 0.048780 0.000000 0.000000 0.951220 0.000000 0.463415 0.195122 0.341463 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTYAAA MEME-3 regular expression -------------------------------------------------------------------------------- [TGA][TA]TT[CT]AAA -------------------------------------------------------------------------------- Time 12.13 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGGCGC MEME-4 width = 8 sites = 8 llr = 88 E-value = 9.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:a probability G :::aa:a: matrix T aaa::::: bits 2.3 *** 2.1 *** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:32098208-32098288 34 1.74e-05 TCGAACAGAA TTTGGCGC GGTCGGGCTG chr20:31230254-31230334 50 1.74e-05 AGATAACACT TTTGGCGC GGCGAGAGGC chr15:48624332-48624412 35 1.74e-05 AAATTTCGGT TTTGGCGC GCTCCCTGCG chr15:30918216-30918296 63 1.74e-05 TGGAGCGCTG TTTGGCGC TGCCATTTGA chr5:126114102-126114182 22 1.74e-05 TGGGTCCCGC TTTGGCGC GCTCAGTCTT chr14:51706612-51706692 60 1.74e-05 ACGCTAACCA TTTGGCGC CAAAATCCTG chr6:90539438-90539518 12 1.74e-05 ATTACTGGAG TTTGGCGC CAACCGTGTT chrX:123095800-123095880 57 1.74e-05 GTTGGGGGGT TTTGGCGC CACTTTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:32098208-32098288 1.7e-05 33_[+4]_39 chr20:31230254-31230334 1.7e-05 49_[+4]_23 chr15:48624332-48624412 1.7e-05 34_[+4]_38 chr15:30918216-30918296 1.7e-05 62_[+4]_10 chr5:126114102-126114182 1.7e-05 21_[+4]_51 chr14:51706612-51706692 1.7e-05 59_[+4]_13 chr6:90539438-90539518 1.7e-05 11_[+4]_61 chrX:123095800-123095880 1.7e-05 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGGCGC width=8 seqs=8 chr6:32098208-32098288 ( 34) TTTGGCGC 1 chr20:31230254-31230334 ( 50) TTTGGCGC 1 chr15:48624332-48624412 ( 35) TTTGGCGC 1 chr15:30918216-30918296 ( 63) TTTGGCGC 1 chr5:126114102-126114182 ( 22) TTTGGCGC 1 chr14:51706612-51706692 ( 60) TTTGGCGC 1 chr6:90539438-90539518 ( 12) TTTGGCGC 1 chrX:123095800-123095880 ( 57) TTTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 9.3e+001 -965 -965 -965 228 -965 -965 -965 228 -965 -965 -965 228 -965 -965 181 -965 -965 -965 181 -965 -965 177 -965 -965 -965 -965 181 -965 -965 177 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.3e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- TTTGGCGC -------------------------------------------------------------------------------- Time 15.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTY MEME-5 width = 8 sites = 22 llr = 194 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C ::2:3:36 probability G ::::1::: matrix T aa886a74 bits 2.3 ** * 2.1 ** * 1.8 ** * 1.6 *** * Relative 1.4 **** * Entropy 1.1 **** ** (12.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTC consensus C CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:42845986-42846066 54 4.60e-06 GTGGGAAGGC TTTTTTTC CTGTTCCTTC chr1:51434427-51434507 9 4.60e-06 GCGCTCAA TTTTTTTC TTTTCAAAAA chr17:21002574-21002654 60 7.84e-06 cctttttctt tttttttt tctttttctt chr6:90539438-90539518 30 7.84e-06 CAACCGTGTT TTTTTTTT TCCCTTCCAA chr1:207921538-207921618 50 1.44e-05 gcaaggccag ttttttcc cgggctatgt chr1:51443114-51443194 54 1.44e-05 TTAGCTCGCG TTTTTTCC CCCTCCCTCG chr1:40167532-40167612 63 1.44e-05 CTTCCCGCCA TTTTTTCC CTTAAGTTAG chr12:54673947-54674027 3 2.55e-05 CC TTTTTTCT CCGCCCACTA chr11:76155913-76155993 22 3.01e-05 ATGTCTGTCC TTTTCTTT CATAACGCGG chr3:6560823-6560903 41 3.01e-05 cagaagtaaa ttttcttt gctgTCTGgt chr1:226595226-226595306 67 3.49e-05 AGCTGCAGAC TTTATTTC CCGGGC chr14:21474102-21474182 22 3.83e-05 aattgttcaa tttatttt ggcgggttaa chr11:94226867-94226947 31 4.48e-05 CAAGGCTGTC TTCTTTTC GGGAAGAAAG chr12:69201590-69201670 17 4.94e-05 TAATTTTGGT TTCTTTTT GGTAACAGCG chr20:1448667-1448747 6 5.58e-05 ctctc ttttgttc ggtgtgcttt chr12:69753865-69753945 35 6.95e-05 CTTTCGCGCC TTTTCTCC TCGGGTTTGA chrX:123095800-123095880 68 6.95e-05 TTGGCGCCAC TTTTGTTT TAGTT chr2:158866896-158866976 59 9.45e-05 ACCATTAACT TTTACTTC CTTGCATAAC chr17:16284689-16284769 60 9.45e-05 TTCTGTCGAG TTTACTTC GCGGGGAAGG chr13:37388873-37388953 66 1.24e-04 ctcggtcaaa ttctttct tgtaagg chr18:2302940-2303020 30 1.24e-04 aactttctgg ttctcttc acccgcttgc chr12:56521779-56521859 29 2.44e-04 CCTGAGCCCC TTTCTTCC TTTTCCCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:42845986-42846066 4.6e-06 53_[+5]_19 chr1:51434427-51434507 4.6e-06 8_[+5]_64 chr17:21002574-21002654 7.8e-06 59_[+5]_13 chr6:90539438-90539518 7.8e-06 29_[+5]_43 chr1:207921538-207921618 1.4e-05 49_[+5]_23 chr1:51443114-51443194 1.4e-05 53_[+5]_19 chr1:40167532-40167612 1.4e-05 62_[+5]_10 chr12:54673947-54674027 2.5e-05 2_[+5]_70 chr11:76155913-76155993 3e-05 21_[+5]_51 chr3:6560823-6560903 3e-05 40_[+5]_32 chr1:226595226-226595306 3.5e-05 66_[+5]_6 chr14:21474102-21474182 3.8e-05 21_[+5]_51 chr11:94226867-94226947 4.5e-05 30_[+5]_42 chr12:69201590-69201670 4.9e-05 16_[+5]_56 chr20:1448667-1448747 5.6e-05 5_[+5]_67 chr12:69753865-69753945 7e-05 34_[+5]_38 chrX:123095800-123095880 7e-05 67_[+5]_5 chr2:158866896-158866976 9.5e-05 58_[+5]_14 chr17:16284689-16284769 9.5e-05 59_[+5]_13 chr13:37388873-37388953 0.00012 65_[+5]_7 chr18:2302940-2303020 0.00012 29_[+5]_43 chr12:56521779-56521859 0.00024 28_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTY width=8 seqs=22 chr13:42845986-42846066 ( 54) TTTTTTTC 1 chr1:51434427-51434507 ( 9) TTTTTTTC 1 chr17:21002574-21002654 ( 60) TTTTTTTT 1 chr6:90539438-90539518 ( 30) TTTTTTTT 1 chr1:207921538-207921618 ( 50) TTTTTTCC 1 chr1:51443114-51443194 ( 54) TTTTTTCC 1 chr1:40167532-40167612 ( 63) TTTTTTCC 1 chr12:54673947-54674027 ( 3) TTTTTTCT 1 chr11:76155913-76155993 ( 22) TTTTCTTT 1 chr3:6560823-6560903 ( 41) TTTTCTTT 1 chr1:226595226-226595306 ( 67) TTTATTTC 1 chr14:21474102-21474182 ( 22) TTTATTTT 1 chr11:94226867-94226947 ( 31) TTCTTTTC 1 chr12:69201590-69201670 ( 17) TTCTTTTT 1 chr20:1448667-1448747 ( 6) TTTTGTTC 1 chr12:69753865-69753945 ( 35) TTTTCTCC 1 chrX:123095800-123095880 ( 68) TTTTGTTT 1 chr2:158866896-158866976 ( 59) TTTACTTC 1 chr17:16284689-16284769 ( 60) TTTACTTC 1 chr13:37388873-37388953 ( 66) TTCTTTCT 1 chr18:2302940-2303020 ( 30) TTCTCTTC 1 chr12:56521779-56521859 ( 29) TTTCTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.8e+003 -1110 -1110 -1110 228 -1110 -1110 -1110 228 -1110 -69 -1110 199 -25 -268 -1110 191 -1110 -10 -165 163 -1110 -1110 -1110 228 -1110 12 -1110 173 -1110 101 -1110 99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.8e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.181818 0.045455 0.000000 0.772727 0.000000 0.272727 0.090909 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.318182 0.000000 0.681818 0.000000 0.590909 0.000000 0.409091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTY MEME-5 regular expression -------------------------------------------------------------------------------- TTTT[TC]T[TC][CT] -------------------------------------------------------------------------------- Time 19.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:140044921-140045001 6.62e-01 80 chr8:144627958-144628038 1.15e-02 54_[+1(2.58e-05)]_18 chr14:21474102-21474182 6.26e-03 21_[+5(3.83e-05)]_51 chr19:44259741-44259821 2.85e-02 32_[+3(6.11e-05)]_40 chr1:144886691-144886771 1.78e-01 50_[+2(6.06e-05)]_22 chr17:34257740-34257820 1.98e-02 61_[+3(9.04e-06)]_11 chr11:64808434-64808514 5.09e-02 80 chr15:44119196-44119276 1.13e-01 [+2(2.61e-05)]_72 chr6:27520294-27520374 1.42e-01 80 chr3:6549383-6549463 4.65e-02 47_[+1(2.58e-05)]_3_[+1(6.23e-05)]_\ 14 chr12:4647996-4648076 1.73e-03 37_[+2(2.61e-05)]_35 chr12:12849072-12849152 1.91e-04 49_[+3(3.63e-05)]_23 chr12:6603177-6603257 2.66e-02 80 chr1:1446529-1446609 1.30e-02 15_[+2(2.61e-05)]_57 chr10:115614110-11561419 2.01e-04 14_[+2(2.61e-05)]_58 chrX:48114602-48114682 4.30e-02 80 chr2:242823386-242823466 7.86e-02 62_[+2(2.61e-05)]_10 chr7:138124151-138124231 1.59e-02 28_[+2(2.61e-05)]_44 chr21:23582195-23582275 2.35e-02 38_[+1(2.58e-05)]_34 chr6:26188724-26188804 3.29e-01 80 chr6:37137507-37137587 2.43e-01 39_[+1(6.23e-05)]_33 chr15:89787610-89787690 1.52e-02 52_[+1(2.58e-05)]_20 chr6:153197077-153197157 1.04e-01 44_[+2(8.72e-05)]_28 chr15:96181529-96181609 1.12e-01 10_[+1(2.58e-05)]_62 chr17:71187801-71187881 8.25e-02 37_[+3(6.11e-05)]_35 chrX:133931362-133931442 6.12e-02 24_[+3(3.63e-05)]_10_[+3(6.83e-05)]_\ 30 chrX:123095800-123095880 4.10e-05 25_[+2(6.06e-05)]_23_[+4(1.74e-05)]_\ 3_[+5(6.95e-05)]_5 chr6:90539438-90539518 6.78e-07 11_[+4(1.74e-05)]_12_[+5(4.60e-06)]_\ 9_[+2(2.61e-05)]_24 chr1:32908154-32908234 8.60e-02 27_[+2(2.61e-05)]_45 chr14:51706612-51706692 1.69e-03 59_[+4(1.74e-05)]_13 chr6:74019488-74019568 9.33e-03 5_[+1(6.23e-05)]_15_[+2(2.61e-05)]_\ 44 chr5:159827001-159827081 1.36e-01 67_[+1(2.58e-05)]_5 chr12:92073356-92073436 5.35e-02 45_[+1(2.58e-05)]_27 chr9:86595672-86595752 7.36e-02 26_[+2(2.61e-05)]_46 chr8:127304986-127305066 8.18e-02 68_[+2(8.72e-05)]_4 chr20:1448667-1448747 1.96e-01 5_[+5(5.58e-05)]_67 chr7:14030717-14030797 7.12e-03 80 chr17:21002574-21002654 4.27e-02 61_[+5(4.60e-06)]_1_[+5(3.01e-05)]_\ 2 chr1:156368386-156368466 1.08e-01 61_[+1(2.58e-05)]_11 chr3:6560615-6560695 3.42e-02 26_[+1(2.58e-05)]_46 chr15:89529140-89529220 5.16e-01 80 chr17:60501109-60501189 1.33e-02 62_[+1(2.58e-05)]_10 chr19:14529044-14529124 6.58e-02 80 chr15:51895934-51896014 1.82e-01 44_[+2(8.72e-05)]_28 chr16:67281559-67281639 7.96e-03 21_[+2(2.61e-05)]_51 chr6:27775871-27775951 2.40e-04 80 chr19:45909353-45909433 7.65e-03 80 chr16:31192144-31192224 9.65e-02 80 chr15:68346376-68346456 3.52e-01 80 chr13:39612437-39612517 2.73e-02 55_[+2(2.61e-05)]_17 chr4:99785847-99785927 1.75e-05 19_[+5(1.44e-05)]_53 chr5:126114102-126114182 2.06e-02 21_[+4(1.74e-05)]_51 chr14:75530674-75530754 1.01e-01 80 chr19:40336342-40336422 1.78e-01 27_[+2(2.61e-05)]_45 chr11:134093845-13409392 2.78e-02 11_[+3(9.43e-05)]_61 chr10:135173751-13517383 5.27e-02 52_[+1(6.23e-05)]_20 chr11:75863338-75863418 2.12e-02 11_[+1(2.58e-05)]_61 chr6:105400922-105401002 1.27e-01 80 chr13:50656076-50656156 1.09e-02 80 chr17:8113882-8113962 3.00e-03 42_[+3(9.04e-06)]_1_[+1(6.23e-05)]_\ 21 chr1:155197519-155197599 9.41e-03 9_[+1(2.58e-05)]_63 chr1:91966485-91966565 1.64e-01 80 chr19:47292095-47292175 6.11e-04 [+1(2.58e-05)]_72 chr2:12072497-12072577 2.71e-03 50_[+1(2.58e-05)]_22 chr1:12597465-12597545 2.80e-03 20_[+1(6.23e-05)]_16_[+3(6.11e-05)]_\ 28 chr19:14492891-14492971 1.83e-03 48_[+1(2.58e-05)]_24 chr20:1448468-1448548 8.17e-03 25_[+1(8.75e-05)]_47 chr15:30918216-30918296 2.30e-03 22_[+3(3.63e-05)]_32_[+4(1.74e-05)]_\ 10 chr18:658393-658473 3.48e-02 23_[+2(2.61e-05)]_49 chr20:23117573-23117653 6.21e-02 34_[+2(2.61e-05)]_38 chr9:91933794-91933874 9.78e-04 38_[+1(8.75e-05)]_20_[+3(3.11e-05)]_\ 6 chr15:48624332-48624412 2.14e-04 18_[+2(2.61e-05)]_8_[+4(1.74e-05)]_\ 38 chr12:31226859-31226939 9.81e-01 80 chr3:6560823-6560903 7.50e-02 40_[+5(3.01e-05)]_32 chr8:117887022-117887102 5.03e-02 80 chr11:13485424-13485504 7.32e-01 80 chr6:84686749-84686829 4.93e-04 37_[+1(2.58e-05)]_35 chrX:48138494-48138574 4.22e-04 19_[+2(2.61e-05)]_53 chr17:16284689-16284769 6.52e-02 59_[+5(9.45e-05)]_13 chr14:50065673-50065753 1.79e-03 9_[+2(2.61e-05)]_7_[+3(3.11e-05)]_\ 48 chr19:49164358-49164438 2.35e-01 80 chr17:57232243-57232323 3.56e-02 29_[+1(6.23e-05)]_43 chr10:94352852-94352932 2.99e-04 4_[+3(9.04e-06)]_68 chr12:6960398-6960478 2.50e-03 47_[+3(3.11e-05)]_1_[+1(2.58e-05)]_\ 16 chr15:40397203-40397283 1.13e-01 35_[+1(6.23e-05)]_37 chr4:174255764-174255844 1.87e-03 32_[+2(2.61e-05)]_4_[+3(6.83e-05)]_\ 28 chr8:86019317-86019397 1.73e-03 61_[+2(2.61e-05)]_11 chr17:36858788-36858868 4.81e-01 80 chr9:106856548-106856628 7.63e-03 36_[+3(6.11e-05)]_36 chrX:100604004-100604084 4.73e-01 80 chr4:88311381-88311461 6.83e-02 23_[+1(2.58e-05)]_49 chr16:58270375-58270455 4.72e-03 55_[+1(2.58e-05)]_17 chr19:47290061-47290141 6.52e-02 68_[+2(2.61e-05)]_4 chr12:39932568-39932648 1.32e-01 20_[+2(2.61e-05)]_52 chr5:112312228-112312308 6.11e-02 23_[+2(2.61e-05)]_49 chr12:54673947-54674027 2.82e-03 2_[+5(2.55e-05)]_33_[+1(6.23e-05)]_\ 29 chr2:128284363-128284443 1.77e-02 45_[+1(2.58e-05)]_27 chr8:27695294-27695374 6.60e-02 35_[+3(9.43e-05)]_37 chr6:97730999-97731079 2.34e-02 61_[+1(2.58e-05)]_11 chrX:118987068-118987148 1.09e-03 23_[+1(2.58e-05)]_49 chr13:31040202-31040282 2.57e-01 53_[+2(6.06e-05)]_19 chr11:95523072-95523152 7.78e-02 80 chr2:130939172-130939252 7.08e-03 34_[+2(2.61e-05)]_38 chr11:9595095-9595175 6.13e-05 47_[+5(4.60e-06)]_25 chr19:51246257-51246337 2.74e-01 80 chr4:120987908-120987988 6.30e-03 63_[+3(3.11e-05)]_9 chr9:73035844-73035924 1.45e-02 51_[+1(2.58e-05)]_21 chr1:40167532-40167612 7.83e-04 53_[+1(2.58e-05)]_1_[+5(1.44e-05)]_\ 10 chr22:38966088-38966168 3.46e-01 80 chr22:41986087-41986167 4.68e-01 80 chr19:53238263-53238343 5.60e-02 71_[+2(2.61e-05)]_1 chr11:74303586-74303666 1.09e-03 48_[+1(2.58e-05)]_[+2(6.06e-05)]_16 chr8:124084718-124084798 3.29e-02 15_[+2(2.61e-05)]_57 chr12:98910346-98910426 1.95e-03 53_[+3(5.12e-05)]_8_[+1(2.58e-05)]_\ 3 chr6:26197742-26197822 8.53e-06 47_[+5(7.84e-06)]_25 chr11:76155913-76155993 9.93e-04 21_[+5(3.01e-05)]_51 chr1:51443114-51443194 2.16e-03 53_[+5(1.44e-05)]_19 chrX:70503460-70503540 1.65e-01 80 chr10:105881902-10588198 3.85e-02 80 chr11:111472679-11147275 2.86e-01 80 chrX:48659798-48659878 9.52e-02 80 chr17:47755679-47755759 2.71e-01 80 chr19:48867498-48867578 4.53e-02 80 chr14:65308582-65308662 5.60e-01 80 chr11:13485224-13485304 1.02e-05 45_[+3(9.04e-06)]_9_[+2(2.61e-05)]_\ 10 chr9:37465738-37465818 3.37e-02 80 chr11:19262599-19262679 2.66e-01 80 chr19:50832978-50833058 1.43e-02 10_[+1(8.75e-05)]_62 chrX:100353034-100353114 2.79e-01 20_[+1(6.23e-05)]_7_[+1(6.23e-05)]_\ 37 chr1:226595226-226595306 1.65e-03 66_[+5(3.49e-05)]_6 chr5:176739415-176739495 7.39e-05 [+1(6.23e-05)]_17_[+2(2.61e-05)]_9_\ [+3(3.11e-05)]_30 chr11:58346310-58346390 3.36e-01 80 chr14:54863532-54863612 3.37e-02 20_[+3(9.43e-05)]_52 chr20:31230254-31230334 1.47e-02 49_[+4(1.74e-05)]_23 chr15:85523640-85523720 1.34e-01 44_[+2(6.06e-05)]_28 chrX:69509950-69510030 7.06e-03 8_[+2(6.06e-05)]_64 chr9:100685016-100685096 9.13e-03 27_[+1(8.75e-05)]_45 chr2:158866896-158866976 2.04e-03 39_[+1(2.58e-05)]_11_[+5(9.45e-05)]_\ 14 chr19:41256728-41256808 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1.89e-03 20_[+4(1.74e-05)]_52 chr9:34049539-34049619 1.96e-01 80 chr6:27099761-27099841 6.14e-02 35_[+3(6.11e-05)]_37 chr2:58468528-58468608 4.74e-02 23_[+2(2.61e-05)]_49 chr1:207921538-207921618 5.92e-03 49_[+5(1.44e-05)]_23 chr2:136634063-136634143 9.52e-03 80 chr19:47777104-47777184 9.03e-02 80 chr4:57302065-57302145 8.21e-01 80 chr14:64854760-64854840 1.44e-03 47_[+1(2.58e-05)]_25 chr17:58677126-58677206 2.60e-01 80 chr16:88540385-88540465 5.79e-01 80 chr14:21777140-21777220 1.86e-02 21_[+2(2.61e-05)]_51 chr11:116643261-11664334 1.23e-02 18_[+2(2.61e-05)]_54 chr7:7680013-7680093 1.77e-01 59_[+2(2.61e-05)]_13 chr22:35795896-35795976 1.85e-03 80 chr18:2302940-2303020 4.03e-04 7_[+3(1.85e-05)]_65 chr13:42845986-42846066 3.86e-03 53_[+5(4.60e-06)]_19 chr14:42066987-42067067 5.61e-03 40_[+1(2.58e-05)]_5_[+1(2.58e-05)]_\ 19 chr6:153323947-153324027 3.23e-03 25_[+2(2.61e-05)]_47 chr11:118955493-11895557 2.15e-02 52_[+1(2.58e-05)]_20 chr15:49103399-49103479 5.38e-03 39_[+3(6.83e-05)]_15_[+2(2.61e-05)]_\ 10 chr11:94226867-94226947 6.69e-02 30_[+5(4.48e-05)]_42 chr12:49524551-49524631 5.77e-04 48_[+1(2.58e-05)]_7_[+2(2.61e-05)]_\ 9 chr3:48229918-48229998 4.90e-02 80 chr6:32098208-32098288 3.88e-02 33_[+4(1.74e-05)]_39 chr4:185654535-185654615 1.40e-01 17_[+1(2.58e-05)]_55 chr7:99723676-99723756 1.19e-01 46_[+2(2.61e-05)]_26 chr2:44769979-44770059 5.41e-02 49_[+2(6.06e-05)]_23 chr1:156542294-156542374 2.87e-02 52_[+1(6.23e-05)]_20 chr6:27862263-27862343 1.86e-02 9_[+3(5.12e-05)]_63 chr20:17949666-17949746 2.42e-01 80 chr20:49347300-49347380 1.38e-02 28_[+2(2.61e-05)]_44 chr10:102672662-10267274 2.13e-02 80 chr2:132250556-132250636 1.85e-02 44_[+1(2.58e-05)]_28 chr19:46431103-46431183 8.63e-02 80 chr5:179050914-179050994 6.61e-02 80 chr10:17065460-17065540 4.08e-05 21_[+1(8.75e-05)]_40_[+3(9.04e-06)]_\ 3 chr17:38574163-38574243 4.91e-01 80 chr1:46050418-46050498 1.55e-02 22_[+2(2.61e-05)]_50 chr11:31832761-31832841 1.61e-02 80 chr12:56521779-56521859 3.36e-03 38_[+1(2.58e-05)]_34 chr16:8891290-8891370 5.66e-01 80 chr1:117602717-117602797 3.46e-02 80 chr10:112424845-11242492 1.00e-01 30_[+1(2.58e-05)]_42 chr19:12792199-12792279 4.95e-02 19_[+1(6.23e-05)]_53 chr1:22111254-22111334 3.96e-01 80 chr1:155246950-155247030 4.02e-03 52_[+1(2.58e-05)]_20 chr1:150336437-150336517 6.02e-02 80 chr11:7101110-7101190 2.11e-01 22_[+2(2.61e-05)]_50 chr2:25016322-25016402 3.98e-03 22_[+2(2.61e-05)]_50 chr14:20811887-20811967 7.56e-01 80 chr4:178230986-178231066 3.39e-02 80 chr1:225965746-225965826 5.38e-02 15_[+1(2.58e-05)]_57 chr15:69706626-69706706 7.82e-03 5_[+3(6.83e-05)]_7_[+2(6.06e-05)]_\ 52 chr17:7835533-7835613 4.55e-01 80 chr6:27799402-27799482 8.57e-03 6_[+2(2.61e-05)]_66 chr18:8877068-8877148 4.22e-04 11_[+3(6.11e-05)]_21_[+2(2.61e-05)]_\ 32 chr22:42342888-42342968 6.84e-02 80 chr19:16222096-16222176 4.00e-02 58_[+1(8.75e-05)]_14 chr7:32720400-32720480 9.94e-01 80 chr9:5675161-5675241 2.46e-04 25_[+3(6.11e-05)]_23_[+2(2.61e-05)]_\ 16 chr3:14361525-14361605 7.92e-01 80 chr16:30411897-30411977 3.41e-01 80 chr12:9600678-9600758 6.79e-01 80 chr3:14361325-14361405 5.02e-03 80 chr6:30685029-30685109 3.38e-01 80 chr13:34117053-34117133 2.78e-03 4_[+1(6.23e-05)]_37_[+1(8.75e-05)]_\ 23 chr12:54611005-54611085 4.33e-01 80 chr17:27396625-27396705 6.75e-03 53_[+2(2.61e-05)]_19 chr17:56085154-56085234 5.29e-03 [+1(2.58e-05)]_72 chr4:103749328-103749408 4.40e-01 80 chr19:12998363-12998443 1.05e-01 80 chr6:17706185-17706265 3.94e-04 52_[+1(2.58e-05)]_20 chr11:47236598-47236678 4.90e-02 80 chr11:58912216-58912296 2.02e-04 24_[+3(8.15e-05)]_22_[+1(2.58e-05)]_\ 18 chr12:69753865-69753945 5.57e-05 34_[+5(6.95e-05)]_38 chr13:37388873-37388953 5.17e-03 80 chr12:21654494-21654574 3.59e-02 47_[+1(2.58e-05)]_25 chr3:194208141-194208221 3.58e-02 80 chr3:127317215-127317295 9.16e-03 80 chr19:44439689-44439769 2.06e-02 53_[+1(2.58e-05)]_19 chr17:57232913-57232993 5.88e-04 17_[+1(6.23e-05)]_55 chr12:56694489-56694569 1.75e-01 80 chr17:30263755-30263835 3.15e-01 80 chr15:41055528-41055608 3.93e-01 80 chr6:26250886-26250966 8.18e-04 80 chr22:41601154-41601234 1.39e-02 58_[+2(6.06e-05)]_14 chr17:8091005-8091085 1.94e-01 80 chr3:45729794-45729874 3.09e-02 80 chr16:72106864-72106944 6.96e-02 21_[+1(2.58e-05)]_51 chr22:50946666-50946746 5.86e-01 80 chr2:219433328-219433408 1.23e-02 1_[+1(2.58e-05)]_71 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************