******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/DPF2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:243420618-243420698 1.0000 80 chr1:31869663-31869743 1.0000 80 chr1:19133097-19133177 1.0000 80 chr1:21931977-21932057 1.0000 80 chr19:1482634-1482714 1.0000 80 chr2:3320971-3321051 1.0000 80 chr6:43276507-43276587 1.0000 80 chr8:124085408-124085488 1.0000 80 chr17:78169989-78170069 1.0000 80 chr16:4364346-4364426 1.0000 80 chr6:52930039-52930119 1.0000 80 chr7:1397015-1397095 1.0000 80 chr16:89253247-89253327 1.0000 80 chr17:3876846-3876926 1.0000 80 chr3:10182738-10182818 1.0000 80 chr6:43770981-43771061 1.0000 80 chr21:45206742-45206822 1.0000 80 chr7:5571531-5571611 1.0000 80 chr2:29468361-29468441 1.0000 80 chr2:12318793-12318873 1.0000 80 chr7:127227990-127228070 1.0000 80 chr11:120100750-12010083 1.0000 80 chr7:410915-410995 1.0000 80 chr10:22678802-22678882 1.0000 80 chr4:7135849-7135929 1.0000 80 chr19:10380164-10380244 1.0000 80 chr2:26828510-26828590 1.0000 80 chr19:48111201-48111281 1.0000 80 chr1:26561636-26561716 1.0000 80 chr7:36061110-36061190 1.0000 80 chr6:3383995-3384075 1.0000 80 chr9:117244273-117244353 1.0000 80 chr12:48136098-48136178 1.0000 80 chr19:10342386-10342466 1.0000 80 chr17:25905811-25905891 1.0000 80 chr17:29025241-29025321 1.0000 80 chr18:3664924-3665004 1.0000 80 chr20:45385216-45385296 1.0000 80 chr16:4364550-4364630 1.0000 80 chr17:73150993-73151073 1.0000 80 chr11:70049099-70049179 1.0000 80 chr3:197186567-197186647 1.0000 80 chr14:35860324-35860404 1.0000 80 chr21:46783927-46784007 1.0000 80 chr7:1397221-1397301 1.0000 80 chr2:121891439-121891519 1.0000 80 chr1:26490328-26490408 1.0000 80 chr19:1445582-1445662 1.0000 80 chr20:31147118-31147198 1.0000 80 chr2:20063212-20063292 1.0000 80 chr17:40608591-40608671 1.0000 80 chr10:104957196-10495727 1.0000 80 chr3:52091052-52091132 1.0000 80 chr19:49078177-49078257 1.0000 80 chr11:3113076-3113156 1.0000 80 chr15:45002869-45002949 1.0000 80 chr9:131964920-131965000 1.0000 80 chr10:76869192-76869272 1.0000 80 chr22:37942747-37942827 1.0000 80 chr21:45206945-45207025 1.0000 80 chr19:35598726-35598806 1.0000 80 chr5:134240097-134240177 1.0000 80 chr1:26465826-26465906 1.0000 80 chr19:344939-345019 1.0000 80 chr15:30113620-30113700 1.0000 80 chr6:43932096-43932176 1.0000 80 chr19:10831438-10831518 1.0000 80 chr1:16402297-16402377 1.0000 80 chr20:335509-335589 1.0000 80 chr10:21819258-21819338 1.0000 80 chr17:26220456-26220536 1.0000 80 chr16:89253450-89253530 1.0000 80 chr1:16409040-16409120 1.0000 80 chr11:78129326-78129406 1.0000 80 chr6:112164898-112164978 1.0000 80 chr2:85641364-85641444 1.0000 80 chr9:71634822-71634902 1.0000 80 chr16:25269770-25269850 1.0000 80 chr4:7077886-7077966 1.0000 80 chr2:242951235-242951315 1.0000 80 chr19:38734695-38734775 1.0000 80 chr9:126101477-126101557 1.0000 80 chr19:14328125-14328205 1.0000 80 chr15:42270316-42270396 1.0000 80 chr10:97277366-97277446 1.0000 80 chr19:5231986-5232066 1.0000 80 chr1:19812621-19812701 1.0000 80 chr11:61197762-61197842 1.0000 80 chr11:107436829-10743690 1.0000 80 chr8:126676829-126676909 1.0000 80 chr16:69344561-69344641 1.0000 80 chr7:100425706-100425786 1.0000 80 chr22:29702098-29702178 1.0000 80 chr15:67135544-67135624 1.0000 80 chr5:34924188-34924268 1.0000 80 chr11:61405784-61405864 1.0000 80 chr8:126193282-126193362 1.0000 80 chr9:37840733-37840813 1.0000 80 chr19:2489620-2489700 1.0000 80 chr19:5233320-5233400 1.0000 80 chr20:30747747-30747827 1.0000 80 chr9:130977296-130977376 1.0000 80 chr19:4060162-4060242 1.0000 80 chr16:70470032-70470112 1.0000 80 chr19:39420892-39420972 1.0000 80 chr1:28827646-28827726 1.0000 80 chr12:123756936-12375701 1.0000 80 chr2:65233774-65233854 1.0000 80 chr11:64124013-64124093 1.0000 80 chr19:13215369-13215449 1.0000 80 chr6:10348122-10348202 1.0000 80 chr1:24648643-24648723 1.0000 80 chr3:183128208-183128288 1.0000 80 chr17:62919214-62919294 1.0000 80 chr5:133268431-133268511 1.0000 80 chr22:39928250-39928330 1.0000 80 chr1:120809562-120809642 1.0000 80 chr11:47429328-47429408 1.0000 80 chr8:129078085-129078165 1.0000 80 chr12:125479048-12547912 1.0000 80 chr3:33984157-33984237 1.0000 80 chr6:161223191-161223271 1.0000 80 chr11:74164502-74164582 1.0000 80 chr20:48629148-48629228 1.0000 80 chr5:153121769-153121849 1.0000 80 chr3:171242086-171242166 1.0000 80 chr12:104198876-10419895 1.0000 80 chr15:34635490-34635570 1.0000 80 chr1:61736938-61737018 1.0000 80 chr9:130841362-130841442 1.0000 80 chr3:16351262-16351342 1.0000 80 chr12:111040030-11104011 1.0000 80 chr5:70681220-70681300 1.0000 80 chr19:35632497-35632577 1.0000 80 chr21:33918401-33918481 1.0000 80 chr7:116105989-116106069 1.0000 80 chr22:18453332-18453412 1.0000 80 chr9:137326313-137326393 1.0000 80 chr16:1223911-1223991 1.0000 80 chr17:44965174-44965254 1.0000 80 chr20:33708086-33708166 1.0000 80 chr19:19478085-19478165 1.0000 80 chr8:66629751-66629831 1.0000 80 chr16:81592415-81592495 1.0000 80 chr7:26890091-26890171 1.0000 80 chr1:87901347-87901427 1.0000 80 chr15:52311105-52311185 1.0000 80 chr3:5036288-5036368 1.0000 80 chr1:30664092-30664172 1.0000 80 chr12:104802505-10480258 1.0000 80 chr9:124049454-124049534 1.0000 80 chr22:41107678-41107758 1.0000 80 chr7:12991280-12991360 1.0000 80 chr19:11205878-11205958 1.0000 80 chr6:149440500-149440580 1.0000 80 chr12:114105653-11410573 1.0000 80 chrX:102379403-102379483 1.0000 80 chr19:9186429-9186509 1.0000 80 chr1:41334234-41334314 1.0000 80 chr2:64479888-64479968 1.0000 80 chr5:176421986-176422066 1.0000 80 chr19:4813003-4813083 1.0000 80 chr11:9010291-9010371 1.0000 80 chr10:7070325-7070405 1.0000 80 chrX:14083160-14083240 1.0000 80 chr16:3896761-3896841 1.0000 80 chr7:106675994-106676074 1.0000 80 chr10:25782222-25782302 1.0000 80 chr6:26026019-26026099 1.0000 80 chr17:15862428-15862508 1.0000 80 chr17:39686554-39686634 1.0000 80 chr1:67420675-67420755 1.0000 80 chr6:44040876-44040956 1.0000 80 chr6:17971868-17971948 1.0000 80 chr18:20248092-20248172 1.0000 80 chr1:110473856-110473936 1.0000 80 chr7:133768832-133768912 1.0000 80 chr5:132576339-132576419 1.0000 80 chr8:29107598-29107678 1.0000 80 chr7:116141659-116141739 1.0000 80 chr1:202913672-202913752 1.0000 80 chr9:34150378-34150458 1.0000 80 chr10:76952029-76952109 1.0000 80 chr22:26800972-26801052 1.0000 80 chr14:67885738-67885818 1.0000 80 chr15:35459071-35459151 1.0000 80 chr6:33343911-33343991 1.0000 80 chr20:33301347-33301427 1.0000 80 chr19:3761944-3762024 1.0000 80 chr15:67316840-67316920 1.0000 80 chr6:13992962-13993042 1.0000 80 chr1:249183744-249183824 1.0000 80 chr5:172229748-172229828 1.0000 80 chr19:41172404-41172484 1.0000 80 chr7:29686795-29686875 1.0000 80 chr10:75639384-75639464 1.0000 80 chr3:179093038-179093118 1.0000 80 chr20:3998884-3998964 1.0000 80 chr2:26578484-26578564 1.0000 80 chr15:35849844-35849924 1.0000 80 chrX:130086539-130086619 1.0000 80 chr11:44355025-44355105 1.0000 80 chr2:33175278-33175358 1.0000 80 chr7:32546018-32546098 1.0000 80 chr6:20458786-20458866 1.0000 80 chr6:91078876-91078956 1.0000 80 chr8:91200048-91200128 1.0000 80 chr4:187766512-187766592 1.0000 80 chr2:170870526-170870606 1.0000 80 chr11:74814647-74814727 1.0000 80 chr2:38591464-38591544 1.0000 80 chr5:79950620-79950700 1.0000 80 chr16:53089672-53089752 1.0000 80 chr7:150736571-150736651 1.0000 80 chr5:75668562-75668642 1.0000 80 chr18:8913737-8913817 1.0000 80 chr9:108409949-108410029 1.0000 80 chr11:94880745-94880825 1.0000 80 chr1:153031899-153031979 1.0000 80 chr11:61568239-61568319 1.0000 80 chr1:27400835-27400915 1.0000 80 chr8:37939617-37939697 1.0000 80 chr11:100840548-10084062 1.0000 80 chr18:9005581-9005661 1.0000 80 chr20:34411226-34411306 1.0000 80 chr7:123178371-123178451 1.0000 80 chr20:57596220-57596300 1.0000 80 chr6:160992389-160992469 1.0000 80 chr7:88319283-88319363 1.0000 80 chr1:36615458-36615538 1.0000 80 chr20:31125174-31125254 1.0000 80 chr9:111896497-111896577 1.0000 80 chr1:44514089-44514169 1.0000 80 chr9:136454715-136454795 1.0000 80 chr1:246741164-246741244 1.0000 80 chr1:10571186-10571266 1.0000 80 chr19:2161398-2161478 1.0000 80 chr5:112378668-112378748 1.0000 80 chr2:162029747-162029827 1.0000 80 chr4:26703546-26703626 1.0000 80 chr2:219287349-219287429 1.0000 80 chr5:71530169-71530249 1.0000 80 chr16:75077165-75077245 1.0000 80 chr9:101338784-101338864 1.0000 80 chr7:111078714-111078794 1.0000 80 chr3:5043946-5044026 1.0000 80 chr8:108322707-108322787 1.0000 80 chr6:40683651-40683731 1.0000 80 chrX:65382308-65382388 1.0000 80 chr17:39924068-39924148 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_DPF2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/DPF2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.259 C 0.249 G 0.255 T 0.237 Background letter frequencies (from file dataset with add-one prior applied): A 0.259 C 0.249 G 0.255 T 0.237 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAYAGTAG MEME-1 width = 8 sites = 60 llr = 575 E-value = 2.5e-061 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9:a::9: pos.-specific C a:6::::: probability G :1::a:1a matrix T ::4::a:: bits 2.1 * 1.9 * *** * 1.7 ** *** * 1.5 ** ***** Relative 1.2 ** ***** Entropy 1.0 ******** (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACAGTAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:39924068-39924148 15 1.66e-05 GTGCTGAGCG CACAGTAG GTCCCCTAGA chr9:136454715-136454795 42 1.66e-05 CGCGCACACA CACAGTAG GGCGGCATTG chr16:53089672-53089752 28 1.66e-05 CCCCACCCCC CACAGTAG GGCTGGTTCT chr19:4813003-4813083 4 1.66e-05 gca cacagtag gcgctggatg chr12:114105653-11410573 31 1.66e-05 ggggctggca cacagtag gtgttcaact chr16:81592415-81592495 14 1.66e-05 AGTGGCTGCG CACAGTAG GCCCACTGTT chr22:39928250-39928330 34 1.66e-05 gcgcctggca cacagtag gtCTAGCAAT chr1:24648643-24648723 16 1.66e-05 GGGCTTGGCA CACAGTAG GTCTAAGGCA chr19:39420892-39420972 10 1.66e-05 TGTCCAGGA CACAGTAG GCATTCTTGG chr11:61405784-61405864 30 1.66e-05 AGAAGGAGCA CACAGTAG GCATCCAGCC chr16:69344561-69344641 23 1.66e-05 caacgctgca cacagtag gtgtgcatgc chr10:97277366-97277446 41 1.66e-05 gtgcctggaa cacagtag gtactcaaat chr9:71634822-71634902 8 1.66e-05 atttgtg cacagtag gcctacgttt chr17:40608591-40608671 36 1.66e-05 ctctctggca cacagtag gccctcagca chr2:20063212-20063292 44 1.66e-05 CAGGCCAGCA CACAGTAG GCGCTCAAGG chr19:1445582-1445662 52 1.66e-05 ggacccagca cacagtag gtgctttata chr7:1397221-1397301 20 1.66e-05 ATCTTTAGCG CACAGTAG GTAAATCCTC chr21:46783927-46784007 30 1.66e-05 gtgcctgaca cacagtag gagcttggcg chr11:70049099-70049179 41 1.66e-05 CGGCCCTGCA CACAGTAG GGCCGCACCG chr9:117244273-117244353 62 1.66e-05 TTGTCCTGCG CACAGTAG GTATTTGTGA chr19:10380164-10380244 45 1.66e-05 acgccaagca cacagtag gcgcttaaaa chr7:410915-410995 51 1.66e-05 GGGCCCAGCA CACAGTAG GTGCTCAACA chr6:43770981-43771061 22 1.66e-05 GCCCAGGACG CACAGTAG GTCCTCAGCG chr17:3876846-3876926 6 1.66e-05 CTGCA CACAGTAG GGGGTCCACA chr16:89253247-89253327 63 1.66e-05 acacccagca cacagtag gtgctctgta chr7:1397015-1397095 72 1.66e-05 ATCTTTAGCG CACAGTAG G chr6:52930039-52930119 73 1.66e-05 GGCGCGCGCA CACAGTAG chr17:78169989-78170069 32 1.66e-05 GGGCCTTGCA CACAGTAG GTGCTTTGCT chr6:43276507-43276587 52 1.66e-05 GCACGCGGCA CACAGTAG GTACGCCGCT chr1:21931977-21932057 15 1.66e-05 GGGCTGCGCA CACAGTAG GCGCTCACAG chr12:111040030-11104011 46 3.24e-05 ggtccgggca catagtag gtgctcagta chr11:74164502-74164582 41 3.24e-05 atgcgtggca catagtag gcactcaaca chr11:47429328-47429408 23 3.24e-05 gtgaatagca catagtag gtggtcagta chr11:64124013-64124093 57 3.24e-05 aacaaaaaaa CATAGTAG GTCTTTGAAG chr19:4060162-4060242 70 3.24e-05 CAGGGTGGCG CATAGTAG GGG chr15:42270316-42270396 13 3.24e-05 tttgtgggca catagtag gtgtgcatat chr19:14328125-14328205 59 3.24e-05 gatcctggaa catagtag gcgctcagga chr19:10831438-10831518 16 3.24e-05 CTGCCTGGCA CATAGTAG GTCTACATGG chr10:76869192-76869272 46 3.24e-05 gggtctgaca catagtag gtgcttagaa chr9:131964920-131965000 30 3.24e-05 gggcctagcg catagtag gtgctcacta chr20:31147118-31147198 50 3.24e-05 gatgctggca catagtag gtactcagca chr1:26490328-26490408 4 3.24e-05 gca catagtag ggccacaggc chr20:45385216-45385296 12 3.24e-05 caaatatGCA CATAGTAG GTACACAAAA chr12:48136098-48136178 34 3.24e-05 gtgcctggca catagtag ggtctcaata chr1:26561636-26561716 54 3.24e-05 gagccaggcg catagtag gcacgcagta chr4:7135849-7135929 25 3.24e-05 Ggcacctgct catagtag gtgctttatt chr10:22678802-22678882 37 3.24e-05 agccctggca catagtag gtgcttacga chr2:29468361-29468441 19 3.24e-05 GTGCCCTGCA CATAGTAG GGGCTCCATG chr3:10182738-10182818 30 3.24e-05 GTGCTCTGCA CATAGTAG GTCTAATTAT chr11:3113076-3113156 39 4.87e-05 ACCCTCTGCA CGCAGTAG GTGCACGGCT chr5:172229748-172229828 54 6.51e-05 aatgagtcat cacagtgg gccctaatcc chr16:1223911-1223991 43 6.51e-05 AACCTGTGCA CACAGTGG GACCTCACGT chr15:52311105-52311185 11 8.06e-05 gtgccttgca cgtagtag gtgcttagta chr7:36061110-36061190 14 8.06e-05 Tcatctagca cgtagtag gtgctcagca chr8:124085408-124085488 2 8.06e-05 a cgtagtag gtgctcagtg chr20:3998884-3998964 11 9.62e-05 GTGACTGGCA CATAGTGG GTCTGCTGTG chr9:126101477-126101557 16 1.13e-04 gtgcttggca cagAGTAG GTCCACGAAT chr19:11205878-11205958 32 1.28e-04 CTCCTTTAAG CACAGTTG AAATTGAGCT chr1:61736938-61737018 68 1.45e-04 TATCATCGTA CACAGTAC CGACT chr19:19478085-19478165 41 1.62e-04 atgctgggaa cacagcag agaccacatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:39924068-39924148 1.7e-05 14_[+1]_58 chr9:136454715-136454795 1.7e-05 41_[+1]_31 chr16:53089672-53089752 1.7e-05 27_[+1]_45 chr19:4813003-4813083 1.7e-05 3_[+1]_69 chr12:114105653-11410573 1.7e-05 30_[+1]_42 chr16:81592415-81592495 1.7e-05 13_[+1]_59 chr22:39928250-39928330 1.7e-05 33_[+1]_39 chr1:24648643-24648723 1.7e-05 15_[+1]_57 chr19:39420892-39420972 1.7e-05 9_[+1]_63 chr11:61405784-61405864 1.7e-05 29_[+1]_43 chr16:69344561-69344641 1.7e-05 22_[+1]_50 chr10:97277366-97277446 1.7e-05 40_[+1]_32 chr9:71634822-71634902 1.7e-05 7_[+1]_65 chr17:40608591-40608671 1.7e-05 35_[+1]_37 chr2:20063212-20063292 1.7e-05 43_[+1]_29 chr19:1445582-1445662 1.7e-05 51_[+1]_21 chr7:1397221-1397301 1.7e-05 19_[+1]_53 chr21:46783927-46784007 1.7e-05 29_[+1]_43 chr11:70049099-70049179 1.7e-05 40_[+1]_32 chr9:117244273-117244353 1.7e-05 61_[+1]_11 chr19:10380164-10380244 1.7e-05 44_[+1]_28 chr7:410915-410995 1.7e-05 50_[+1]_22 chr6:43770981-43771061 1.7e-05 21_[+1]_51 chr17:3876846-3876926 1.7e-05 5_[+1]_67 chr16:89253247-89253327 1.7e-05 62_[+1]_10 chr7:1397015-1397095 1.7e-05 71_[+1]_1 chr6:52930039-52930119 1.7e-05 72_[+1] chr17:78169989-78170069 1.7e-05 31_[+1]_41 chr6:43276507-43276587 1.7e-05 51_[+1]_21 chr1:21931977-21932057 1.7e-05 14_[+1]_58 chr12:111040030-11104011 3.2e-05 45_[+1]_27 chr11:74164502-74164582 3.2e-05 40_[+1]_32 chr11:47429328-47429408 3.2e-05 22_[+1]_50 chr11:64124013-64124093 3.2e-05 56_[+1]_16 chr19:4060162-4060242 3.2e-05 69_[+1]_3 chr15:42270316-42270396 3.2e-05 12_[+1]_60 chr19:14328125-14328205 3.2e-05 58_[+1]_14 chr19:10831438-10831518 3.2e-05 15_[+1]_57 chr10:76869192-76869272 3.2e-05 45_[+1]_27 chr9:131964920-131965000 3.2e-05 29_[+1]_43 chr20:31147118-31147198 3.2e-05 49_[+1]_23 chr1:26490328-26490408 3.2e-05 3_[+1]_69 chr20:45385216-45385296 3.2e-05 11_[+1]_61 chr12:48136098-48136178 3.2e-05 33_[+1]_39 chr1:26561636-26561716 3.2e-05 53_[+1]_19 chr4:7135849-7135929 3.2e-05 24_[+1]_48 chr10:22678802-22678882 3.2e-05 36_[+1]_36 chr2:29468361-29468441 3.2e-05 18_[+1]_54 chr3:10182738-10182818 3.2e-05 29_[+1]_43 chr11:3113076-3113156 4.9e-05 38_[+1]_34 chr5:172229748-172229828 6.5e-05 53_[+1]_19 chr16:1223911-1223991 6.5e-05 42_[+1]_30 chr15:52311105-52311185 8.1e-05 10_[+1]_62 chr7:36061110-36061190 8.1e-05 13_[+1]_59 chr8:124085408-124085488 8.1e-05 1_[+1]_71 chr20:3998884-3998964 9.6e-05 10_[+1]_62 chr9:126101477-126101557 0.00011 15_[+1]_57 chr19:11205878-11205958 0.00013 31_[+1]_41 chr1:61736938-61737018 0.00014 67_[+1]_5 chr19:19478085-19478165 0.00016 40_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAYAGTAG width=8 seqs=60 chr17:39924068-39924148 ( 15) CACAGTAG 1 chr9:136454715-136454795 ( 42) CACAGTAG 1 chr16:53089672-53089752 ( 28) CACAGTAG 1 chr19:4813003-4813083 ( 4) CACAGTAG 1 chr12:114105653-11410573 ( 31) CACAGTAG 1 chr16:81592415-81592495 ( 14) CACAGTAG 1 chr22:39928250-39928330 ( 34) CACAGTAG 1 chr1:24648643-24648723 ( 16) CACAGTAG 1 chr19:39420892-39420972 ( 10) CACAGTAG 1 chr11:61405784-61405864 ( 30) CACAGTAG 1 chr16:69344561-69344641 ( 23) CACAGTAG 1 chr10:97277366-97277446 ( 41) CACAGTAG 1 chr9:71634822-71634902 ( 8) CACAGTAG 1 chr17:40608591-40608671 ( 36) CACAGTAG 1 chr2:20063212-20063292 ( 44) CACAGTAG 1 chr19:1445582-1445662 ( 52) CACAGTAG 1 chr7:1397221-1397301 ( 20) CACAGTAG 1 chr21:46783927-46784007 ( 30) CACAGTAG 1 chr11:70049099-70049179 ( 41) CACAGTAG 1 chr9:117244273-117244353 ( 62) CACAGTAG 1 chr19:10380164-10380244 ( 45) CACAGTAG 1 chr7:410915-410995 ( 51) CACAGTAG 1 chr6:43770981-43771061 ( 22) CACAGTAG 1 chr17:3876846-3876926 ( 6) CACAGTAG 1 chr16:89253247-89253327 ( 63) CACAGTAG 1 chr7:1397015-1397095 ( 72) CACAGTAG 1 chr6:52930039-52930119 ( 73) CACAGTAG 1 chr17:78169989-78170069 ( 32) CACAGTAG 1 chr6:43276507-43276587 ( 52) CACAGTAG 1 chr1:21931977-21932057 ( 15) CACAGTAG 1 chr12:111040030-11104011 ( 46) CATAGTAG 1 chr11:74164502-74164582 ( 41) CATAGTAG 1 chr11:47429328-47429408 ( 23) CATAGTAG 1 chr11:64124013-64124093 ( 57) CATAGTAG 1 chr19:4060162-4060242 ( 70) CATAGTAG 1 chr15:42270316-42270396 ( 13) CATAGTAG 1 chr19:14328125-14328205 ( 59) CATAGTAG 1 chr19:10831438-10831518 ( 16) CATAGTAG 1 chr10:76869192-76869272 ( 46) CATAGTAG 1 chr9:131964920-131965000 ( 30) CATAGTAG 1 chr20:31147118-31147198 ( 50) CATAGTAG 1 chr1:26490328-26490408 ( 4) CATAGTAG 1 chr20:45385216-45385296 ( 12) CATAGTAG 1 chr12:48136098-48136178 ( 34) CATAGTAG 1 chr1:26561636-26561716 ( 54) CATAGTAG 1 chr4:7135849-7135929 ( 25) CATAGTAG 1 chr10:22678802-22678882 ( 37) CATAGTAG 1 chr2:29468361-29468441 ( 19) CATAGTAG 1 chr3:10182738-10182818 ( 30) CATAGTAG 1 chr11:3113076-3113156 ( 39) CGCAGTAG 1 chr5:172229748-172229828 ( 54) CACAGTGG 1 chr16:1223911-1223991 ( 43) CACAGTGG 1 chr15:52311105-52311185 ( 11) CGTAGTAG 1 chr7:36061110-36061190 ( 14) CGTAGTAG 1 chr8:124085408-124085488 ( 2) CGTAGTAG 1 chr20:3998884-3998964 ( 11) CATAGTGG 1 chr9:126101477-126101557 ( 16) CAGAGTAG 1 chr19:11205878-11205958 ( 32) CACAGTTG 1 chr1:61736938-61737018 ( 68) CACAGTAC 1 chr19:19478085-19478165 ( 41) CACAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.91997 E= 2.5e-061 -1255 201 -1255 -1255 185 -1255 -194 -1255 -1255 127 -393 70 195 -1255 -1255 -1255 -1255 -1255 197 -1255 -1255 -390 -1255 206 185 -1255 -235 -382 -1255 -390 195 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 2.5e-061 0.000000 1.000000 0.000000 0.000000 0.933333 0.000000 0.066667 0.000000 0.000000 0.600000 0.016667 0.383333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.016667 0.000000 0.983333 0.933333 0.000000 0.050000 0.016667 0.000000 0.016667 0.983333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYAGTAG MEME-1 regular expression -------------------------------------------------------------------------------- CA[CT]AGTAG -------------------------------------------------------------------------------- Time 4.88 secs. ******************************************************************************** ******************************************************************************** MOTIF CTACTRTG MEME-2 width = 8 sites = 64 llr = 588 E-value = 4.6e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::5:: pos.-specific C a1:a::1: probability G :::::5:a matrix T :9::a:8: bits 2.1 * * 1.9 * ** * 1.7 * *** * 1.5 ***** * Relative 1.2 ***** ** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTACTATG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:44965174-44965254 19 1.41e-05 TGTAGCACTc ctactatg tgccaaacac chr5:133268431-133268511 16 1.41e-05 aaatgaaggc ctactatg tgccaccgtg chr12:123756936-12375701 55 1.41e-05 agggaagcac ctactatg cgccactcac chr19:5233320-5233400 1 1.41e-05 . ctactatg tgccaggtac chr15:67135544-67135624 62 1.41e-05 gactgagcac ctactatg cgctagacat chr1:19812621-19812701 39 1.41e-05 tattcagcac ctactatg tgccaggcct chr19:5231986-5232066 55 1.41e-05 tattaggcac ctactatg tgccagcacc chr2:85641364-85641444 57 1.41e-05 CTGTGAGAGC CTACTATG TGCTTGGTGC chr6:112164898-112164978 22 1.41e-05 TTAAGAGGGC CTACTATG AGTTAGGCAC chr10:21819258-21819338 43 1.41e-05 tactctagac ctactatg tgcaagacac chr1:26465826-26465906 47 1.41e-05 AAAATAAGCC CTACTATG TGCCAGGCAC chr15:45002869-45002949 39 1.41e-05 tactgagtac ctactatg tgccagcccc chr10:104957196-10495727 33 1.41e-05 Cattgagtgc ctactatg tgcctaacac chr14:35860324-35860404 32 1.41e-05 tactgagtgc ctactatg tgtctggcac chr20:45385216-45385296 40 1.41e-05 ATATGCATAC CTACTATG TGCACATAAA chr18:3664924-3665004 60 1.41e-05 GCCACTGGTC CTACTATG CTATTGTCTG chr6:3383995-3384075 60 1.41e-05 ccctgaggtc ctactatg cgcctgacca chr2:12318793-12318873 49 1.41e-05 ATGAAGgcac ctactatg tgctgtgttc chr16:4364346-4364426 49 1.41e-05 GAGTCCACAC CTACTATG TGTGCATTCA chr1:19133097-19133177 8 1.41e-05 tgagaac ctactatg tgccagatgt chr1:31869663-31869743 31 1.41e-05 gcatggagcc ctactatg tgcagggccc chr1:243420618-243420698 59 1.41e-05 TCAGTGCCTc ctactatg tgttaagcat chr20:31125174-31125254 44 2.80e-05 CGCGGTgcac ctactgtg tgccaagcac chr3:179093038-179093118 40 2.80e-05 CAGATACTAG CTACTGTG AAAAACATAA chr8:29107598-29107678 43 2.80e-05 CTCCGGAAAT CTACTGTG ACTCACCACC chr19:19478085-19478165 17 2.80e-05 tattaagcac ctactgtg cgctggatgc chr15:34635490-34635570 26 2.80e-05 TGGAGTGTCC CTACTGTG TGCTAGGTAC chr12:125479048-12547912 56 2.80e-05 AACCGAGCAC CTACTGTG TGCGGGGCCT chr8:129078085-129078165 64 2.80e-05 gctgagagtc ctactgtg tgccccaca chr19:2489620-2489700 43 2.80e-05 CATGCAAAGC CTACTGTG TGCAGAACCC chr7:100425706-100425786 64 2.80e-05 TGTTGGGGAC CTACTGTG CGCGCAACC chr19:38734695-38734775 31 2.80e-05 GGGCAAGCGC CTACTGTG CGCCCGGCGC chr1:16409040-16409120 45 2.80e-05 tgctgaggcc ctactgtg taccacgtct chr20:335509-335589 68 2.80e-05 TCAGgagcac ctactgtg tgctg chr1:16402297-16402377 64 2.80e-05 tataaagcac ctactgtg tgccagtgt chr6:43932096-43932176 25 2.80e-05 CATAAAGCAC CTACTGTG TGCTTAGCAC chr5:134240097-134240177 7 2.80e-05 GAGCTC CTACTGTG TGCTGAGCCT chr19:49078177-49078257 37 2.80e-05 tattgaaggc ctactgtg tgcgcaaggc chr17:25905811-25905891 44 2.80e-05 atttatgcac ctactgtg tgccaggcgt chr19:10342386-10342466 49 2.80e-05 CATTAAGTGC CTACTGTG TGTCCACCCA chr2:26828510-26828590 46 2.80e-05 aagtgagcac ctactgtg tgcaggctgt chr11:120100750-12010083 14 2.80e-05 TCGAAAGCAC CTACTGTG TGCTCAGCCA chr2:3320971-3321051 48 2.80e-05 AGCTGAGGAC CTACTGTG CGCCTTGCAT chr19:1482634-1482714 28 2.80e-05 GACTGCACAC CTACTGTG CGCCTGTCAC chr6:44040876-44040956 53 4.29e-05 ACAGAAGACC CTACTACG CGCAGAGGAC chr9:130977296-130977376 28 4.29e-05 GCCTGCACGC CTACTACG TGCGGGGCCT chr11:78129326-78129406 62 4.29e-05 GGAGACGGAC CTACTACG CGCCGGAGCC chr15:30113620-30113700 35 4.29e-05 AAAACCCGAC CTACTACG CCTCACAGGC chr3:52091052-52091132 5 4.29e-05 acgc ctactacg tgccaggcac chr7:127227990-127228070 1 4.29e-05 . CTACTACG CGCAAGTCCC chr1:120809562-120809642 33 7.23e-05 GCTCACCTCT CCACTATG TAAACGTAAC chr19:13215369-13215449 52 7.23e-05 CAGGAGCGCC CCACTATG CGCAAGCCCG chr20:30747747-30747827 31 8.69e-05 AGCTGAAGCC CCACTGTG TGTCCACAGG chr21:45206742-45206822 58 8.69e-05 TGCGACATAC CCACTGTG CGTGCGACAC chrX:102379403-102379483 53 1.02e-04 tgttgaaatc ctactagg tgccatatac chr17:26220456-26220536 25 1.31e-04 ACTCGGGGTC CTACTGGG TGCCTCTTCC chr16:4364550-4364630 53 1.31e-04 CCATGAGCAC CTGCTATG TGTCCATCTG chr20:3998884-3998964 21 1.45e-04 CATAGTGGGT CTGCTGTG GCTATTGGTG chr17:39924068-39924148 42 1.73e-04 ACACTGATCC CTACTAAG TAACCACCAT chr6:91078876-91078956 33 2.16e-04 ACTCATTCAG CAACTATG TAGTGTTTGC chr11:9010291-9010371 20 2.16e-04 GCTCTGCCTA CTTCTGTG TCAAGTCTCA chr9:111896497-111896577 35 2.63e-04 taaatatctg ctacaatg atgagtaatg chr1:67420675-67420755 2 2.93e-04 g ccactgcg cttggccTGA chr9:137326313-137326393 28 2.93e-04 GCTTCACCCC CCACTGCG CTCCCCTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:44965174-44965254 1.4e-05 18_[+2]_54 chr5:133268431-133268511 1.4e-05 15_[+2]_57 chr12:123756936-12375701 1.4e-05 54_[+2]_18 chr19:5233320-5233400 1.4e-05 [+2]_72 chr15:67135544-67135624 1.4e-05 61_[+2]_11 chr1:19812621-19812701 1.4e-05 38_[+2]_34 chr19:5231986-5232066 1.4e-05 54_[+2]_18 chr2:85641364-85641444 1.4e-05 56_[+2]_16 chr6:112164898-112164978 1.4e-05 21_[+2]_51 chr10:21819258-21819338 1.4e-05 42_[+2]_30 chr1:26465826-26465906 1.4e-05 46_[+2]_26 chr15:45002869-45002949 1.4e-05 38_[+2]_34 chr10:104957196-10495727 1.4e-05 32_[+2]_40 chr14:35860324-35860404 1.4e-05 31_[+2]_41 chr20:45385216-45385296 1.4e-05 39_[+2]_33 chr18:3664924-3665004 1.4e-05 59_[+2]_13 chr6:3383995-3384075 1.4e-05 59_[+2]_13 chr2:12318793-12318873 1.4e-05 48_[+2]_24 chr16:4364346-4364426 1.4e-05 48_[+2]_24 chr1:19133097-19133177 1.4e-05 7_[+2]_65 chr1:31869663-31869743 1.4e-05 30_[+2]_42 chr1:243420618-243420698 1.4e-05 58_[+2]_14 chr20:31125174-31125254 2.8e-05 43_[+2]_29 chr3:179093038-179093118 2.8e-05 39_[+2]_33 chr8:29107598-29107678 2.8e-05 42_[+2]_30 chr19:19478085-19478165 2.8e-05 16_[+2]_56 chr15:34635490-34635570 2.8e-05 25_[+2]_47 chr12:125479048-12547912 2.8e-05 55_[+2]_17 chr8:129078085-129078165 2.8e-05 63_[+2]_9 chr19:2489620-2489700 2.8e-05 42_[+2]_30 chr7:100425706-100425786 2.8e-05 63_[+2]_9 chr19:38734695-38734775 2.8e-05 30_[+2]_42 chr1:16409040-16409120 2.8e-05 44_[+2]_28 chr20:335509-335589 2.8e-05 67_[+2]_5 chr1:16402297-16402377 2.8e-05 63_[+2]_9 chr6:43932096-43932176 2.8e-05 24_[+2]_48 chr5:134240097-134240177 2.8e-05 6_[+2]_66 chr19:49078177-49078257 2.8e-05 36_[+2]_36 chr17:25905811-25905891 2.8e-05 43_[+2]_29 chr19:10342386-10342466 2.8e-05 48_[+2]_24 chr2:26828510-26828590 2.8e-05 45_[+2]_27 chr11:120100750-12010083 2.8e-05 13_[+2]_59 chr2:3320971-3321051 2.8e-05 47_[+2]_25 chr19:1482634-1482714 2.8e-05 27_[+2]_45 chr6:44040876-44040956 4.3e-05 52_[+2]_20 chr9:130977296-130977376 4.3e-05 27_[+2]_45 chr11:78129326-78129406 4.3e-05 61_[+2]_11 chr15:30113620-30113700 4.3e-05 34_[+2]_38 chr3:52091052-52091132 4.3e-05 4_[+2]_68 chr7:127227990-127228070 4.3e-05 [+2]_72 chr1:120809562-120809642 7.2e-05 32_[+2]_40 chr19:13215369-13215449 7.2e-05 51_[+2]_21 chr20:30747747-30747827 8.7e-05 30_[+2]_42 chr21:45206742-45206822 8.7e-05 57_[+2]_15 chrX:102379403-102379483 0.0001 52_[+2]_20 chr17:26220456-26220536 0.00013 24_[+2]_48 chr16:4364550-4364630 0.00013 52_[+2]_20 chr20:3998884-3998964 0.00014 20_[+2]_52 chr17:39924068-39924148 0.00017 41_[+2]_31 chr6:91078876-91078956 0.00022 32_[+2]_40 chr11:9010291-9010371 0.00022 19_[+2]_53 chr9:111896497-111896577 0.00026 34_[+2]_38 chr1:67420675-67420755 0.00029 1_[+2]_71 chr9:137326313-137326393 0.00029 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTACTRTG width=8 seqs=64 chr17:44965174-44965254 ( 19) CTACTATG 1 chr5:133268431-133268511 ( 16) CTACTATG 1 chr12:123756936-12375701 ( 55) CTACTATG 1 chr19:5233320-5233400 ( 1) CTACTATG 1 chr15:67135544-67135624 ( 62) CTACTATG 1 chr1:19812621-19812701 ( 39) CTACTATG 1 chr19:5231986-5232066 ( 55) CTACTATG 1 chr2:85641364-85641444 ( 57) CTACTATG 1 chr6:112164898-112164978 ( 22) CTACTATG 1 chr10:21819258-21819338 ( 43) CTACTATG 1 chr1:26465826-26465906 ( 47) CTACTATG 1 chr15:45002869-45002949 ( 39) CTACTATG 1 chr10:104957196-10495727 ( 33) CTACTATG 1 chr14:35860324-35860404 ( 32) CTACTATG 1 chr20:45385216-45385296 ( 40) CTACTATG 1 chr18:3664924-3665004 ( 60) CTACTATG 1 chr6:3383995-3384075 ( 60) CTACTATG 1 chr2:12318793-12318873 ( 49) CTACTATG 1 chr16:4364346-4364426 ( 49) CTACTATG 1 chr1:19133097-19133177 ( 8) CTACTATG 1 chr1:31869663-31869743 ( 31) CTACTATG 1 chr1:243420618-243420698 ( 59) CTACTATG 1 chr20:31125174-31125254 ( 44) CTACTGTG 1 chr3:179093038-179093118 ( 40) CTACTGTG 1 chr8:29107598-29107678 ( 43) CTACTGTG 1 chr19:19478085-19478165 ( 17) CTACTGTG 1 chr15:34635490-34635570 ( 26) CTACTGTG 1 chr12:125479048-12547912 ( 56) CTACTGTG 1 chr8:129078085-129078165 ( 64) CTACTGTG 1 chr19:2489620-2489700 ( 43) CTACTGTG 1 chr7:100425706-100425786 ( 64) CTACTGTG 1 chr19:38734695-38734775 ( 31) CTACTGTG 1 chr1:16409040-16409120 ( 45) CTACTGTG 1 chr20:335509-335589 ( 68) CTACTGTG 1 chr1:16402297-16402377 ( 64) CTACTGTG 1 chr6:43932096-43932176 ( 25) CTACTGTG 1 chr5:134240097-134240177 ( 7) CTACTGTG 1 chr19:49078177-49078257 ( 37) CTACTGTG 1 chr17:25905811-25905891 ( 44) CTACTGTG 1 chr19:10342386-10342466 ( 49) CTACTGTG 1 chr2:26828510-26828590 ( 46) CTACTGTG 1 chr11:120100750-12010083 ( 14) CTACTGTG 1 chr2:3320971-3321051 ( 48) CTACTGTG 1 chr19:1482634-1482714 ( 28) CTACTGTG 1 chr6:44040876-44040956 ( 53) CTACTACG 1 chr9:130977296-130977376 ( 28) CTACTACG 1 chr11:78129326-78129406 ( 62) CTACTACG 1 chr15:30113620-30113700 ( 35) CTACTACG 1 chr3:52091052-52091132 ( 5) CTACTACG 1 chr7:127227990-127228070 ( 1) CTACTACG 1 chr1:120809562-120809642 ( 33) CCACTATG 1 chr19:13215369-13215449 ( 52) CCACTATG 1 chr20:30747747-30747827 ( 31) CCACTGTG 1 chr21:45206742-45206822 ( 58) CCACTGTG 1 chrX:102379403-102379483 ( 53) CTACTAGG 1 chr17:26220456-26220536 ( 25) CTACTGGG 1 chr16:4364550-4364630 ( 53) CTGCTATG 1 chr20:3998884-3998964 ( 21) CTGCTGTG 1 chr17:39924068-39924148 ( 42) CTACTAAG 1 chr6:91078876-91078956 ( 33) CAACTATG 1 chr11:9010291-9010371 ( 20) CTTCTGTG 1 chr9:111896497-111896577 ( 35) CTACAATG 1 chr1:67420675-67420755 ( 2) CCACTGCG 1 chr9:137326313-137326393 ( 28) CCACTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.15054 E= 4.6e-058 -1264 201 -1264 -1264 -405 -141 -1264 191 188 -1264 -303 -392 -1264 201 -1264 -1264 -405 -1264 -1264 206 108 -1264 83 -1264 -405 -99 -303 181 -1264 -1264 197 -1264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 4.6e-058 0.000000 1.000000 0.000000 0.000000 0.015625 0.093750 0.000000 0.890625 0.953125 0.000000 0.031250 0.015625 0.000000 1.000000 0.000000 0.000000 0.015625 0.000000 0.000000 0.984375 0.546875 0.000000 0.453125 0.000000 0.015625 0.125000 0.031250 0.828125 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACTRTG MEME-2 regular expression -------------------------------------------------------------------------------- CTACT[AG]TG -------------------------------------------------------------------------------- Time 8.50 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGASTCA MEME-3 width = 8 sites = 79 llr = 690 E-value = 6.5e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5::a:1:a pos.-specific C 2:::6:a: probability G 4:a:3::: matrix T :a:::9:: bits 2.1 * * 1.9 ** ** 1.7 *** *** 1.5 *** *** Relative 1.2 *** *** Entropy 1.0 *** *** (12.6 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGACTCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:71530169-71530249 12 1.54e-05 AACAGAAGCC ATGACTCA TGAGGTTTGG chr1:10571186-10571266 13 1.54e-05 TGGAACCCAG ATGACTCA CCATTCTATT chr1:36615458-36615538 47 1.54e-05 AAAACTAGCA ATGACTCA CACAGAATTG chr11:94880745-94880825 57 1.54e-05 CGATAGTGAG ATGACTCA CCCCATTCCA chr5:75668562-75668642 49 1.54e-05 TGTCATTAGG ATGACTCA TCATTTTTCT chr11:74814647-74814727 48 1.54e-05 CAGACACACT ATGACTCA GAATGAGCAC chr8:91200048-91200128 53 1.54e-05 TTCCAAGAAG ATGACTCA TTAACATGAG chr6:91078876-91078956 7 1.54e-05 AATTAG ATGACTCA AGGTGGTGAC chr15:35849844-35849924 47 1.54e-05 TTACAACACG ATGACTCA GCTTATCACT chr19:41172404-41172484 70 1.54e-05 TTACCACGCT ATGACTCA GAG chr15:67316840-67316920 49 1.54e-05 TGAGGGAAAG ATGACTCA TTCCCAGGCT chr5:132576339-132576419 43 1.54e-05 CTCTTCGCGC ATGACTCA TCTCTTTGTG chr7:133768832-133768912 62 1.54e-05 GCCTGGAAAC ATGACTCA TCCAAGGGTG chr6:26026019-26026099 37 1.54e-05 ttatctgctg atgactca cacattttta chr10:7070325-7070405 8 1.54e-05 tgatgca atgactca ctaatgagtc chr19:9186429-9186509 7 1.54e-05 CTGCCC ATGACTCA CTCGGCCCCC chr1:30664092-30664172 48 1.54e-05 TAGACCAGTG ATGACTCA GAGCAGCTTC chr2:65233774-65233854 50 1.54e-05 tgtaatctca atgactca gaaggctgag chr1:28827646-28827726 50 1.54e-05 GGCCTCAGCA ATGACTCA CTTCTATTTG chr8:126676829-126676909 58 1.54e-05 TTCTAGCTGC ATGACTCA CCCGGCCAAG chr2:29468361-29468441 1 1.54e-05 . ATGACTCA GTGCCCTGCA chr2:219287349-219287429 29 3.06e-05 TCACTAAGAG GTGACTCA AAGTCAAGGT chr20:34411226-34411306 26 3.06e-05 gccgggaatg gtgactca tgcctataat chr7:150736571-150736651 19 3.06e-05 TCAGGGACCA GTGACTCA CCTTCCTCCT chr11:44355025-44355105 40 3.06e-05 caacgctggt gtgactca aCTCTTATCA chr6:13992962-13993042 70 3.06e-05 gactatgaac gtgactca tca chr14:67885738-67885818 50 3.06e-05 GATGTGAGGT GTGACTCA GCTGTGTGCA chr10:76952029-76952109 45 3.06e-05 AATCTCACTG GTGACTCA CTGGTGCATC chr18:20248092-20248172 5 3.06e-05 TGCA GTGACTCA TAGCATCATC chr9:124049454-124049534 29 3.06e-05 GGGCCTCTGG GTGACTCA GCCCTGAGTC chr7:116105989-116106069 18 3.06e-05 AGCCTACCAA GTGACTCA TCCTTTCTTA chr3:16351262-16351342 1 3.06e-05 . gtgactca ttccacctct chr3:171242086-171242166 33 3.06e-05 gactcagtgt gtgactca gtgtgtgCCG chr3:183128208-183128288 18 3.06e-05 GGACCCATGG GTGACTCA GCCAGTGTTA chr6:10348122-10348202 30 3.06e-05 AAATCTCTCT GTGACTCA TTCGATGAGG chr16:70470032-70470112 28 3.06e-05 gccaggagcg gtgactca cgcctgtaat chr5:34924188-34924268 45 3.06e-05 GAGTCACACA GTGACTCA TTCAGGAGAA chr1:44514089-44514169 45 4.64e-05 ATAAGAACAG ATGAGTCA GAGGTTTCTG chr11:100840548-10084062 31 4.64e-05 tgcctggtgt atgagtca cactttgctg chr1:27400835-27400915 29 4.64e-05 ATGATAAAAT ATGAGTCA TTATGGTGtg chr5:172229748-172229828 45 4.64e-05 ttaagttaga atgagtca tcacagtggg chr7:106675994-106676074 51 4.64e-05 ggtcaggaag atgagtca tattcagtaa chrX:14083160-14083240 39 4.64e-05 CTAACCCAAG ATGAGTCA CACCACTCCC chr19:11205878-11205958 10 4.64e-05 GCACAAGAA ATGAGTCA TTTCCTCCTT chr22:41107678-41107758 28 4.64e-05 ttacagagac atgagtca tcgagaggct chr3:33984157-33984237 51 4.64e-05 TAGATAAGAG ATGAGTCA TATTTGGGGA chr14:35860324-35860404 73 4.64e-05 tacagacatc atgagtca chr19:2161398-2161478 43 6.20e-05 gattacaggc gtgagtca ccgctcctgg chr7:29686795-29686875 3 6.20e-05 ga gtgagtca ccctagaagc chr6:17971868-17971948 68 6.20e-05 gattacagga gtgagtca ccacg chr1:67420675-67420755 38 6.20e-05 TTTTTACAAA GTGAGTCA CACTTCTTAT chr7:12991280-12991360 36 6.20e-05 GGATAAGAAA GTGAGTCA TTTAAACAAA chr12:104802505-10480258 10 6.20e-05 GCTGGAATA GTGAGTCA CCCTCGGGGt chr7:26890091-26890171 56 6.20e-05 tgaggctgca gtgagtca tgatcacacc chr8:66629751-66629831 23 6.20e-05 CACTTGCAAG GTGAGTCA TTAGTAGATA chr20:33708086-33708166 60 6.20e-05 gataacaggc gtgagtca ctgcacccag chr7:123178371-123178451 22 7.68e-05 ATCTAGAATA CTGACTCA TCTCTAGTCT chr20:33301347-33301427 63 7.68e-05 ACAATGGGGT CTGACTCA TAAATGACTA chr2:64479888-64479968 53 7.68e-05 actctctttt ctgactca gcccgcctgc chr9:37840733-37840813 36 7.68e-05 ccctcactca ctgactca cccagagcaa chr1:153031899-153031979 37 9.20e-05 ATAACACAGT CTGAGTCA CACCCTGCGA chr9:34150378-34150458 39 9.20e-05 GAGTTCAAGG CTGAGTCA TCAGGGTGAG chr17:39686554-39686634 24 9.20e-05 CTGGTCAGCT CTGAGTCA TTCCCTTATC chr11:107436829-10743690 42 9.20e-05 agtcatccct ctgagtca tccctctgct chr21:46783927-46784007 56 9.20e-05 cgagtgtctg ctgagtca atgaGAAAGG chr22:29702098-29702178 28 1.25e-04 CTTCACAGAG GTGACACA CCAGTTCATT chr17:25905811-25905891 62 1.25e-04 tgccaggcgt gtgacaca catattgtgg chr7:32546018-32546098 56 1.54e-04 ggttgatggg atgattca caagtcaagt chr6:33343911-33343991 69 1.54e-04 ggtcgacaaa atgtctca agca chr6:149440500-149440580 35 1.54e-04 GAGAAGTTGT ATGATTCA TACCATTACT chr5:112378668-112378748 62 1.88e-04 acagaGCTAG ATGAATCA GCATCTGTTT chr10:97277366-97277446 68 1.88e-04 tatttgtaga atgaatCA CACCA chr17:44965174-44965254 66 2.49e-04 gaagcaatta gtgagaca ggcggag chr17:3876846-3876926 64 2.49e-04 GGGGTCCACA GTGAGACA CATCCCGCT chr1:61736938-61737018 30 2.63e-04 GATAAGGCAG TTGACTCA CTCTTCAACT chr2:12318793-12318873 71 2.94e-04 gtgttcagac ctgacaca ca chr1:21931977-21932057 61 2.94e-04 agcccaggac ctgacaca cagtgggtgc chr1:243420618-243420698 44 2.94e-04 TATGCCTACT ATGTGTCA GTGCCTccta chr11:64124013-64124093 23 3.50e-04 cagagtgaga ctgtctca aaaacaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:71530169-71530249 1.5e-05 11_[+3]_61 chr1:10571186-10571266 1.5e-05 12_[+3]_60 chr1:36615458-36615538 1.5e-05 46_[+3]_26 chr11:94880745-94880825 1.5e-05 56_[+3]_16 chr5:75668562-75668642 1.5e-05 48_[+3]_24 chr11:74814647-74814727 1.5e-05 47_[+3]_25 chr8:91200048-91200128 1.5e-05 52_[+3]_20 chr6:91078876-91078956 1.5e-05 6_[+3]_66 chr15:35849844-35849924 1.5e-05 46_[+3]_26 chr19:41172404-41172484 1.5e-05 69_[+3]_3 chr15:67316840-67316920 1.5e-05 48_[+3]_24 chr5:132576339-132576419 1.5e-05 42_[+3]_30 chr7:133768832-133768912 1.5e-05 61_[+3]_11 chr6:26026019-26026099 1.5e-05 36_[+3]_36 chr10:7070325-7070405 1.5e-05 7_[+3]_65 chr19:9186429-9186509 1.5e-05 6_[+3]_66 chr1:30664092-30664172 1.5e-05 47_[+3]_25 chr2:65233774-65233854 1.5e-05 49_[+3]_23 chr1:28827646-28827726 1.5e-05 49_[+3]_23 chr8:126676829-126676909 1.5e-05 57_[+3]_15 chr2:29468361-29468441 1.5e-05 [+3]_72 chr2:219287349-219287429 3.1e-05 28_[+3]_44 chr20:34411226-34411306 3.1e-05 25_[+3]_47 chr7:150736571-150736651 3.1e-05 18_[+3]_54 chr11:44355025-44355105 3.1e-05 39_[+3]_33 chr6:13992962-13993042 3.1e-05 69_[+3]_3 chr14:67885738-67885818 3.1e-05 49_[+3]_23 chr10:76952029-76952109 3.1e-05 44_[+3]_28 chr18:20248092-20248172 3.1e-05 4_[+3]_68 chr9:124049454-124049534 3.1e-05 28_[+3]_44 chr7:116105989-116106069 3.1e-05 17_[+3]_55 chr3:16351262-16351342 3.1e-05 [+3]_72 chr3:171242086-171242166 3.1e-05 32_[+3]_40 chr3:183128208-183128288 3.1e-05 17_[+3]_55 chr6:10348122-10348202 3.1e-05 29_[+3]_43 chr16:70470032-70470112 3.1e-05 27_[+3]_45 chr5:34924188-34924268 3.1e-05 44_[+3]_28 chr1:44514089-44514169 4.6e-05 44_[+3]_28 chr11:100840548-10084062 4.6e-05 30_[+3]_42 chr1:27400835-27400915 4.6e-05 28_[+3]_44 chr5:172229748-172229828 4.6e-05 44_[+3]_28 chr7:106675994-106676074 4.6e-05 50_[+3]_22 chrX:14083160-14083240 4.6e-05 38_[+3]_34 chr19:11205878-11205958 4.6e-05 9_[+3]_63 chr22:41107678-41107758 4.6e-05 27_[+3]_45 chr3:33984157-33984237 4.6e-05 50_[+3]_22 chr14:35860324-35860404 4.6e-05 72_[+3] chr19:2161398-2161478 6.2e-05 42_[+3]_30 chr7:29686795-29686875 6.2e-05 2_[+3]_70 chr6:17971868-17971948 6.2e-05 67_[+3]_5 chr1:67420675-67420755 6.2e-05 37_[+3]_35 chr7:12991280-12991360 6.2e-05 35_[+3]_37 chr12:104802505-10480258 6.2e-05 9_[+3]_63 chr7:26890091-26890171 6.2e-05 55_[+3]_17 chr8:66629751-66629831 6.2e-05 22_[+3]_50 chr20:33708086-33708166 6.2e-05 59_[+3]_13 chr7:123178371-123178451 7.7e-05 21_[+3]_51 chr20:33301347-33301427 7.7e-05 62_[+3]_10 chr2:64479888-64479968 7.7e-05 52_[+3]_20 chr9:37840733-37840813 7.7e-05 35_[+3]_37 chr1:153031899-153031979 9.2e-05 36_[+3]_36 chr9:34150378-34150458 9.2e-05 38_[+3]_34 chr17:39686554-39686634 9.2e-05 23_[+3]_49 chr11:107436829-10743690 9.2e-05 41_[+3]_31 chr21:46783927-46784007 9.2e-05 55_[+3]_17 chr22:29702098-29702178 0.00013 27_[+3]_45 chr17:25905811-25905891 0.00013 61_[+3]_11 chr7:32546018-32546098 0.00015 55_[+3]_17 chr6:33343911-33343991 0.00015 68_[+3]_4 chr6:149440500-149440580 0.00015 34_[+3]_38 chr5:112378668-112378748 0.00019 61_[+3]_11 chr10:97277366-97277446 0.00019 67_[+3]_5 chr17:44965174-44965254 0.00025 65_[+3]_7 chr17:3876846-3876926 0.00025 63_[+3]_9 chr1:61736938-61737018 0.00026 29_[+3]_43 chr2:12318793-12318873 0.00029 70_[+3]_2 chr1:21931977-21932057 0.00029 60_[+3]_12 chr1:243420618-243420698 0.00029 43_[+3]_29 chr11:64124013-64124093 0.00035 22_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGASTCA width=8 seqs=79 chr5:71530169-71530249 ( 12) ATGACTCA 1 chr1:10571186-10571266 ( 13) ATGACTCA 1 chr1:36615458-36615538 ( 47) ATGACTCA 1 chr11:94880745-94880825 ( 57) ATGACTCA 1 chr5:75668562-75668642 ( 49) ATGACTCA 1 chr11:74814647-74814727 ( 48) ATGACTCA 1 chr8:91200048-91200128 ( 53) ATGACTCA 1 chr6:91078876-91078956 ( 7) ATGACTCA 1 chr15:35849844-35849924 ( 47) ATGACTCA 1 chr19:41172404-41172484 ( 70) ATGACTCA 1 chr15:67316840-67316920 ( 49) ATGACTCA 1 chr5:132576339-132576419 ( 43) ATGACTCA 1 chr7:133768832-133768912 ( 62) ATGACTCA 1 chr6:26026019-26026099 ( 37) ATGACTCA 1 chr10:7070325-7070405 ( 8) ATGACTCA 1 chr19:9186429-9186509 ( 7) ATGACTCA 1 chr1:30664092-30664172 ( 48) ATGACTCA 1 chr2:65233774-65233854 ( 50) ATGACTCA 1 chr1:28827646-28827726 ( 50) ATGACTCA 1 chr8:126676829-126676909 ( 58) ATGACTCA 1 chr2:29468361-29468441 ( 1) ATGACTCA 1 chr2:219287349-219287429 ( 29) GTGACTCA 1 chr20:34411226-34411306 ( 26) GTGACTCA 1 chr7:150736571-150736651 ( 19) GTGACTCA 1 chr11:44355025-44355105 ( 40) GTGACTCA 1 chr6:13992962-13993042 ( 70) GTGACTCA 1 chr14:67885738-67885818 ( 50) GTGACTCA 1 chr10:76952029-76952109 ( 45) GTGACTCA 1 chr18:20248092-20248172 ( 5) GTGACTCA 1 chr9:124049454-124049534 ( 29) GTGACTCA 1 chr7:116105989-116106069 ( 18) GTGACTCA 1 chr3:16351262-16351342 ( 1) GTGACTCA 1 chr3:171242086-171242166 ( 33) GTGACTCA 1 chr3:183128208-183128288 ( 18) GTGACTCA 1 chr6:10348122-10348202 ( 30) GTGACTCA 1 chr16:70470032-70470112 ( 28) GTGACTCA 1 chr5:34924188-34924268 ( 45) GTGACTCA 1 chr1:44514089-44514169 ( 45) ATGAGTCA 1 chr11:100840548-10084062 ( 31) ATGAGTCA 1 chr1:27400835-27400915 ( 29) ATGAGTCA 1 chr5:172229748-172229828 ( 45) ATGAGTCA 1 chr7:106675994-106676074 ( 51) ATGAGTCA 1 chrX:14083160-14083240 ( 39) ATGAGTCA 1 chr19:11205878-11205958 ( 10) ATGAGTCA 1 chr22:41107678-41107758 ( 28) ATGAGTCA 1 chr3:33984157-33984237 ( 51) ATGAGTCA 1 chr14:35860324-35860404 ( 73) ATGAGTCA 1 chr19:2161398-2161478 ( 43) GTGAGTCA 1 chr7:29686795-29686875 ( 3) GTGAGTCA 1 chr6:17971868-17971948 ( 68) GTGAGTCA 1 chr1:67420675-67420755 ( 38) GTGAGTCA 1 chr7:12991280-12991360 ( 36) GTGAGTCA 1 chr12:104802505-10480258 ( 10) GTGAGTCA 1 chr7:26890091-26890171 ( 56) GTGAGTCA 1 chr8:66629751-66629831 ( 23) GTGAGTCA 1 chr20:33708086-33708166 ( 60) GTGAGTCA 1 chr7:123178371-123178451 ( 22) CTGACTCA 1 chr20:33301347-33301427 ( 63) CTGACTCA 1 chr2:64479888-64479968 ( 53) CTGACTCA 1 chr9:37840733-37840813 ( 36) CTGACTCA 1 chr1:153031899-153031979 ( 37) CTGAGTCA 1 chr9:34150378-34150458 ( 39) CTGAGTCA 1 chr17:39686554-39686634 ( 24) CTGAGTCA 1 chr11:107436829-10743690 ( 42) CTGAGTCA 1 chr21:46783927-46784007 ( 56) CTGAGTCA 1 chr22:29702098-29702178 ( 28) GTGACACA 1 chr17:25905811-25905891 ( 62) GTGACACA 1 chr7:32546018-32546098 ( 56) ATGATTCA 1 chr6:33343911-33343991 ( 69) ATGTCTCA 1 chr6:149440500-149440580 ( 35) ATGATTCA 1 chr5:112378668-112378748 ( 62) ATGAATCA 1 chr10:97277366-97277446 ( 68) ATGAATCA 1 chr17:44965174-44965254 ( 66) GTGAGACA 1 chr17:3876846-3876926 ( 64) GTGAGACA 1 chr1:61736938-61737018 ( 30) TTGACTCA 1 chr2:12318793-12318873 ( 71) CTGACACA 1 chr1:21931977-21932057 ( 61) CTGACACA 1 chr1:243420618-243420698 ( 44) ATGTGTCA 1 chr11:64124013-64124093 ( 23) CTGTCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.78077 E= 6.5e-067 85 -71 52 -422 -1295 -1295 -1295 208 -1295 -1295 197 -1295 189 -1295 -1295 -264 -335 129 42 -322 -177 -1295 -1295 197 -1295 201 -1295 -1295 195 -1295 -1295 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 6.5e-067 0.468354 0.151899 0.367089 0.012658 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.962025 0.000000 0.000000 0.037975 0.025316 0.607595 0.341772 0.025316 0.075949 0.000000 0.000000 0.924051 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]TGA[CG]TCA -------------------------------------------------------------------------------- Time 12.05 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTTATCT MEME-4 width = 8 sites = 26 llr = 243 E-value = 3.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1::a::3 pos.-specific C 38::::a: probability G :::::::: matrix T 72aa:a:7 bits 2.1 ** ** 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.2 ****** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCT consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:101338784-101338864 19 1.20e-05 CTTACTACAG TCTTATCT TAAgggccag chr9:108409949-108410029 23 1.20e-05 TAGGCTGCAC TCTTATCT GCTGCCCACA chrX:130086539-130086619 54 1.20e-05 ctgtggtttg tcttatct ctggctaaca chr7:29686795-29686875 72 1.20e-05 ctggtcacta tcttatct a chr1:67420675-67420755 50 1.20e-05 GAGTCACACT TCTTATCT GTATATCCAG chr11:9010291-9010371 41 1.20e-05 AGTCTCACTC TCTTATCT TTCAGATGCA chr7:116105989-116106069 31 1.20e-05 ACTCATCCTT TCTTATCT TCTTTTTCCA chr9:130841362-130841442 40 1.20e-05 ATAAGGAGCT TCTTATCT ACTTTAAGCT chr5:132576339-132576419 8 2.46e-05 GGGAGGC CCTTATCT CTTAGCGCAT chrX:14083160-14083240 10 2.46e-05 CTGGCAATT CCTTATCT GAAGCGCCTT chr2:64479888-64479968 25 2.46e-05 acggctccac ccttatct ccttttgctg chr3:16351262-16351342 35 2.46e-05 aacctgcttt ccttatct gtcgctgtgg chr6:20458786-20458866 43 3.77e-05 CCAACCCATA TCTTATCA GTGTAACTTT chr11:44355025-44355105 50 3.77e-05 gtgactcaaC TCTTATCA GTGACCTTAG chr1:87901347-87901427 3 3.77e-05 GT TCTTATCA TAGCACACCA chr1:61736938-61737018 55 3.77e-05 ACTTAAACAG TCTTATCA TCGTACACAG chr16:75077165-75077245 48 6.30e-05 CCAGACATGG TTTTATCT TTTCAGAAGC chr6:160992389-160992469 26 6.30e-05 gcagtctgtc ccttatca gagctctagt chr2:170870526-170870606 29 6.30e-05 ACACAGATGC CCTTATCA GCAGCAACCA chr9:34150378-34150458 1 6.30e-05 . TTTTATCT CCCTTCAGCA chr7:116141659-116141739 27 6.30e-05 ttactcacag cctTATCA GGGCAGCTGG chr17:39686554-39686634 35 6.30e-05 TGAGTCATTC CCTTATCA GGCACTGATG chr6:26026019-26026099 50 6.30e-05 actcacacat ttttatct ccagctcaga chr6:149440500-149440580 65 7.50e-05 GCAGTTTGTA CTTTATCT CTTCCTTC chr11:100840548-10084062 7 8.75e-05 agtttt tattatct actttttgcc chr8:126676829-126676909 19 8.75e-05 GTGTCATTCC TATTATCT TATTTACCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:101338784-101338864 1.2e-05 18_[+4]_54 chr9:108409949-108410029 1.2e-05 22_[+4]_50 chrX:130086539-130086619 1.2e-05 53_[+4]_19 chr7:29686795-29686875 1.2e-05 71_[+4]_1 chr1:67420675-67420755 1.2e-05 49_[+4]_23 chr11:9010291-9010371 1.2e-05 40_[+4]_32 chr7:116105989-116106069 1.2e-05 30_[+4]_42 chr9:130841362-130841442 1.2e-05 39_[+4]_33 chr5:132576339-132576419 2.5e-05 7_[+4]_65 chrX:14083160-14083240 2.5e-05 9_[+4]_63 chr2:64479888-64479968 2.5e-05 24_[+4]_48 chr3:16351262-16351342 2.5e-05 34_[+4]_38 chr6:20458786-20458866 3.8e-05 42_[+4]_30 chr11:44355025-44355105 3.8e-05 49_[+4]_23 chr1:87901347-87901427 3.8e-05 2_[+4]_70 chr1:61736938-61737018 3.8e-05 54_[+4]_18 chr16:75077165-75077245 6.3e-05 47_[+4]_25 chr6:160992389-160992469 6.3e-05 25_[+4]_47 chr2:170870526-170870606 6.3e-05 28_[+4]_44 chr9:34150378-34150458 6.3e-05 [+4]_72 chr7:116141659-116141739 6.3e-05 26_[+4]_46 chr17:39686554-39686634 6.3e-05 34_[+4]_38 chr6:26026019-26026099 6.3e-05 49_[+4]_23 chr6:149440500-149440580 7.5e-05 64_[+4]_8 chr11:100840548-10084062 8.7e-05 6_[+4]_66 chr8:126676829-126676909 8.7e-05 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTTATCT width=8 seqs=26 chr9:101338784-101338864 ( 19) TCTTATCT 1 chr9:108409949-108410029 ( 23) TCTTATCT 1 chrX:130086539-130086619 ( 54) TCTTATCT 1 chr7:29686795-29686875 ( 72) TCTTATCT 1 chr1:67420675-67420755 ( 50) TCTTATCT 1 chr11:9010291-9010371 ( 41) TCTTATCT 1 chr7:116105989-116106069 ( 31) TCTTATCT 1 chr9:130841362-130841442 ( 40) TCTTATCT 1 chr5:132576339-132576419 ( 8) CCTTATCT 1 chrX:14083160-14083240 ( 10) CCTTATCT 1 chr2:64479888-64479968 ( 25) CCTTATCT 1 chr3:16351262-16351342 ( 35) CCTTATCT 1 chr6:20458786-20458866 ( 43) TCTTATCA 1 chr11:44355025-44355105 ( 50) TCTTATCA 1 chr1:87901347-87901427 ( 3) TCTTATCA 1 chr1:61736938-61737018 ( 55) TCTTATCA 1 chr16:75077165-75077245 ( 48) TTTTATCT 1 chr6:160992389-160992469 ( 26) CCTTATCA 1 chr2:170870526-170870606 ( 29) CCTTATCA 1 chr9:34150378-34150458 ( 1) TTTTATCT 1 chr7:116141659-116141739 ( 27) CCTTATCA 1 chr17:39686554-39686634 ( 35) CCTTATCA 1 chr6:26026019-26026099 ( 50) TTTTATCT 1 chr6:149440500-149440580 ( 65) CTTTATCT 1 chr11:100840548-10084062 ( 7) TATTATCT 1 chr8:126676829-126676909 ( 19) TATTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6186 E= 3.9e-007 -1134 47 -1134 147 -175 163 -1134 -62 -1134 -1134 -1134 208 -1134 -1134 -1134 208 195 -1134 -1134 -1134 -1134 -1134 -1134 208 -1134 201 -1134 -1134 25 -1134 -1134 155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.9e-007 0.000000 0.346154 0.000000 0.653846 0.076923 0.769231 0.000000 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.692308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCT MEME-4 regular expression -------------------------------------------------------------------------------- [TC]CTTATC[TA] -------------------------------------------------------------------------------- Time 15.51 secs. ******************************************************************************** ******************************************************************************** MOTIF DGAGATAA MEME-5 width = 8 sites = 30 llr = 258 E-value = 2.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 42a:a:aa pos.-specific C :2:::::: probability G 35:a:::: matrix T 31:::a:: bits 2.1 * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.2 ****** Entropy 1.0 ****** (12.4 bits) 0.8 ****** 0.6 ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel AGAGATAA consensus GA sequence TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:40683651-40683731 58 3.56e-05 CGGTGGTGAC GGAGATAA GGGCCCTGTC chr4:26703546-26703626 73 3.56e-05 TTTGGTCACC AGAGATAA chr9:111896497-111896577 66 3.56e-05 tctgcattag ggagataa caaggag chr18:9005581-9005661 65 3.56e-05 GCTGCAGGAC AGAGATAA GAAGCAGT chr2:38591464-38591544 58 3.56e-05 GCTGTGTTGC AGAGATAA ACTCAAAGTG chr5:172229748-172229828 10 3.56e-05 aatgtattt ggagataa ggcctttaaa chr20:33301347-33301427 24 3.56e-05 GAGGAAGAGG GGAGATAA GCTTACTGGG chr15:35459071-35459151 42 3.56e-05 GGAGCTTAAG AGAGATAA GACATGACTT chr12:104802505-10480258 29 3.56e-05 CCTCGGGGtt agagataa ggaagctagg chr1:153031899-153031979 23 5.21e-05 GATCACTGTG TGAGATAA CACAGTCTGA chr11:74814647-74814727 73 5.21e-05 CACTGCACTC TGAGATAA chr20:33708086-33708166 47 5.21e-05 cctgaagtgt tgagataa caggcgtgag chr6:161223191-161223271 23 5.21e-05 ctctgctcac tgagataa atgcatatct chr11:107436829-10743690 63 5.21e-05 ctctgctcac tgagataa atgcatatct chr1:44514089-44514169 31 1.23e-04 TTATGGGAAG GAAGATAA GAACAGATGA chr7:88319283-88319363 24 1.23e-04 gctgaaaagc aaagataa agcagaatca chr20:57596220-57596300 23 1.23e-04 TCTGAAGCTG GAAGATAA TACGGAAAGG chr8:37939617-37939697 71 1.23e-04 actggtgagt acagataa gg chr8:91200048-91200128 26 1.23e-04 CTGTGCAAAT GCAGATAA CTGCCTGTCT chr1:202913672-202913752 28 1.23e-04 CATGGGCAGC AAAGATAA GCTTTACTTG chr16:3896761-3896841 59 1.23e-04 CACTGGCAGG ACAGATAA GAAATAATAG chr1:19812621-19812701 70 1.23e-04 ttaggcaccg gaagataa cag chr6:112164898-112164978 50 1.23e-04 TAGGCTTGGC ACAGATAA GGATTCTGAG chr20:45385216-45385296 57 1.23e-04 GTGCACATAA ACAGataa ctagaggcta chr10:25782222-25782302 73 1.56e-04 TCTGCACCAC TCAGATAA chr2:12318793-12318873 20 1.56e-04 GCTGGACTTG TAAGATAA CAGCAATTAA chr8:66629751-66629831 34 1.89e-04 TGAGTCATTA GTAGATAA GCTCGGACTG chr7:1397221-1397301 2 1.89e-04 A GTAGATAA ATCTTTAGCG chr7:29686795-29686875 46 2.04e-04 agtgcatcct ttagataa ctgccactct chr3:33984157-33984237 40 2.04e-04 AGTGGTGCGA TTAGATAA GAGATGAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:40683651-40683731 3.6e-05 57_[+5]_15 chr4:26703546-26703626 3.6e-05 72_[+5] chr9:111896497-111896577 3.6e-05 65_[+5]_7 chr18:9005581-9005661 3.6e-05 64_[+5]_8 chr2:38591464-38591544 3.6e-05 57_[+5]_15 chr5:172229748-172229828 3.6e-05 9_[+5]_63 chr20:33301347-33301427 3.6e-05 23_[+5]_49 chr15:35459071-35459151 3.6e-05 41_[+5]_31 chr12:104802505-10480258 3.6e-05 28_[+5]_44 chr1:153031899-153031979 5.2e-05 22_[+5]_50 chr11:74814647-74814727 5.2e-05 72_[+5] chr20:33708086-33708166 5.2e-05 46_[+5]_26 chr6:161223191-161223271 5.2e-05 22_[+5]_50 chr11:107436829-10743690 5.2e-05 62_[+5]_10 chr1:44514089-44514169 0.00012 30_[+5]_42 chr7:88319283-88319363 0.00012 23_[+5]_49 chr20:57596220-57596300 0.00012 22_[+5]_50 chr8:37939617-37939697 0.00012 70_[+5]_2 chr8:91200048-91200128 0.00012 25_[+5]_47 chr1:202913672-202913752 0.00012 27_[+5]_45 chr16:3896761-3896841 0.00012 58_[+5]_14 chr1:19812621-19812701 0.00012 69_[+5]_3 chr6:112164898-112164978 0.00012 49_[+5]_23 chr20:45385216-45385296 0.00012 56_[+5]_16 chr10:25782222-25782302 0.00016 72_[+5] chr2:12318793-12318873 0.00016 19_[+5]_53 chr8:66629751-66629831 0.00019 33_[+5]_39 chr7:1397221-1397301 0.00019 1_[+5]_71 chr7:29686795-29686875 0.0002 45_[+5]_27 chr3:33984157-33984237 0.0002 39_[+5]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGAGATAA width=8 seqs=30 chr6:40683651-40683731 ( 58) GGAGATAA 1 chr4:26703546-26703626 ( 73) AGAGATAA 1 chr9:111896497-111896577 ( 66) GGAGATAA 1 chr18:9005581-9005661 ( 65) AGAGATAA 1 chr2:38591464-38591544 ( 58) AGAGATAA 1 chr5:172229748-172229828 ( 10) GGAGATAA 1 chr20:33301347-33301427 ( 24) GGAGATAA 1 chr15:35459071-35459151 ( 42) AGAGATAA 1 chr12:104802505-10480258 ( 29) AGAGATAA 1 chr1:153031899-153031979 ( 23) TGAGATAA 1 chr11:74814647-74814727 ( 73) TGAGATAA 1 chr20:33708086-33708166 ( 47) TGAGATAA 1 chr6:161223191-161223271 ( 23) TGAGATAA 1 chr11:107436829-10743690 ( 63) TGAGATAA 1 chr1:44514089-44514169 ( 31) GAAGATAA 1 chr7:88319283-88319363 ( 24) AAAGATAA 1 chr20:57596220-57596300 ( 23) GAAGATAA 1 chr8:37939617-37939697 ( 71) ACAGATAA 1 chr8:91200048-91200128 ( 26) GCAGATAA 1 chr1:202913672-202913752 ( 28) AAAGATAA 1 chr16:3896761-3896841 ( 59) ACAGATAA 1 chr1:19812621-19812701 ( 70) GAAGATAA 1 chr6:112164898-112164978 ( 50) ACAGATAA 1 chr20:45385216-45385296 ( 57) ACAGATAA 1 chr10:25782222-25782302 ( 73) TCAGATAA 1 chr2:12318793-12318873 ( 20) TAAGATAA 1 chr8:66629751-66629831 ( 34) GTAGATAA 1 chr7:1397221-1397301 ( 2) GTAGATAA 1 chr7:29686795-29686875 ( 46) TTAGATAA 1 chr3:33984157-33984237 ( 40) TTAGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 2.5e-002 50 -1155 38 34 -37 -32 87 -83 195 -1155 -1155 -1155 -1155 -1155 197 -1155 195 -1155 -1155 -1155 -1155 -1155 -1155 208 195 -1155 -1155 -1155 195 -1155 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.5e-002 0.366667 0.000000 0.333333 0.300000 0.200000 0.200000 0.466667 0.133333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAGATAA MEME-5 regular expression -------------------------------------------------------------------------------- [AGT][GAC]AGATAA -------------------------------------------------------------------------------- Time 18.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:243420618-243420698 6.82e-03 38_[+2(1.41e-05)]_12_[+2(1.41e-05)]_\ 14 chr1:31869663-31869743 5.92e-03 30_[+2(1.41e-05)]_42 chr1:19133097-19133177 6.64e-02 7_[+2(1.41e-05)]_15_[+2(1.41e-05)]_\ 42 chr1:21931977-21932057 7.15e-03 14_[+1(1.66e-05)]_44_[+1(6.51e-05)]_\ 6 chr19:1482634-1482714 1.54e-01 27_[+2(2.80e-05)]_45 chr2:3320971-3321051 2.25e-02 47_[+2(2.80e-05)]_25 chr6:43276507-43276587 1.33e-02 51_[+1(1.66e-05)]_21 chr8:124085408-124085488 1.60e-01 1_[+1(8.06e-05)]_71 chr17:78169989-78170069 1.68e-01 31_[+1(1.66e-05)]_41 chr16:4364346-4364426 1.07e-01 48_[+2(1.41e-05)]_24 chr6:52930039-52930119 1.71e-01 72_[+1(1.66e-05)] chr7:1397015-1397095 3.97e-02 27_[+1(1.66e-05)]_14_[+1(1.66e-05)]_\ 14_[+1(1.66e-05)]_1 chr16:89253247-89253327 1.48e-01 33_[+1(1.66e-05)]_21_[+1(1.66e-05)]_\ 10 chr17:3876846-3876926 1.26e-03 5_[+1(1.66e-05)]_67 chr3:10182738-10182818 6.69e-02 29_[+1(3.24e-05)]_43 chr6:43770981-43771061 4.80e-02 21_[+1(1.66e-05)]_51 chr21:45206742-45206822 6.89e-02 15_[+2(8.69e-05)]_34_[+2(8.69e-05)]_\ 15 chr7:5571531-5571611 7.06e-01 80 chr2:29468361-29468441 1.49e-03 [+3(1.54e-05)]_10_[+1(3.24e-05)]_54 chr2:12318793-12318873 4.24e-04 48_[+2(1.41e-05)]_24 chr7:127227990-127228070 1.18e-02 [+2(4.29e-05)]_72 chr11:120100750-12010083 1.60e-01 13_[+2(2.80e-05)]_59 chr7:410915-410995 1.60e-01 14_[+1(1.66e-05)]_28_[+1(1.66e-05)]_\ 22 chr10:22678802-22678882 1.31e-02 36_[+1(3.24e-05)]_36 chr4:7135849-7135929 3.43e-02 24_[+1(3.24e-05)]_48 chr19:10380164-10380244 5.87e-02 44_[+1(1.66e-05)]_28 chr2:26828510-26828590 8.51e-02 45_[+2(2.80e-05)]_27 chr19:48111201-48111281 9.62e-01 80 chr1:26561636-26561716 4.73e-02 53_[+1(3.24e-05)]_19 chr7:36061110-36061190 3.80e-02 13_[+1(8.06e-05)]_59 chr6:3383995-3384075 7.78e-02 59_[+2(1.41e-05)]_13 chr9:117244273-117244353 5.66e-03 6_[+1(1.66e-05)]_47_[+1(1.66e-05)]_\ 11 chr12:48136098-48136178 9.10e-03 33_[+1(3.24e-05)]_39 chr19:10342386-10342466 2.04e-02 48_[+2(2.80e-05)]_24 chr17:25905811-25905891 1.61e-03 43_[+2(2.80e-05)]_29 chr17:29025241-29025321 3.89e-01 80 chr18:3664924-3665004 5.74e-03 59_[+2(1.41e-05)]_13 chr20:45385216-45385296 5.18e-05 11_[+1(3.24e-05)]_20_[+2(1.41e-05)]_\ 33 chr16:4364550-4364630 1.04e-01 80 chr17:73150993-73151073 4.94e-01 80 chr11:70049099-70049179 1.76e-01 40_[+1(1.66e-05)]_32 chr3:197186567-197186647 9.98e-01 80 chr14:35860324-35860404 1.57e-03 31_[+2(1.41e-05)]_33_[+3(4.64e-05)] chr21:46783927-46784007 6.60e-04 29_[+1(1.66e-05)]_18_[+3(9.20e-05)]_\ 17 chr7:1397221-1397301 4.34e-04 19_[+1(1.66e-05)]_53 chr2:121891439-121891519 3.59e-01 80 chr1:26490328-26490408 1.26e-01 3_[+1(3.24e-05)]_69 chr19:1445582-1445662 4.57e-02 51_[+1(1.66e-05)]_21 chr20:31147118-31147198 4.26e-02 49_[+1(3.24e-05)]_23 chr2:20063212-20063292 1.75e-01 43_[+1(1.66e-05)]_29 chr17:40608591-40608671 3.47e-02 35_[+1(1.66e-05)]_37 chr10:104957196-10495727 5.04e-02 32_[+2(1.41e-05)]_40 chr3:52091052-52091132 6.90e-02 4_[+2(4.29e-05)]_68 chr19:49078177-49078257 9.37e-02 36_[+2(2.80e-05)]_36 chr11:3113076-3113156 2.06e-01 38_[+1(4.87e-05)]_34 chr15:45002869-45002949 2.77e-02 38_[+2(1.41e-05)]_34 chr9:131964920-131965000 2.87e-02 29_[+1(3.24e-05)]_43 chr10:76869192-76869272 1.72e-03 45_[+1(3.24e-05)]_27 chr22:37942747-37942827 3.96e-01 80 chr21:45206945-45207025 7.68e-02 14_[+2(8.69e-05)]_14_[+2(8.69e-05)]_\ 12_[+2(8.69e-05)]_16 chr19:35598726-35598806 6.23e-01 80 chr5:134240097-134240177 1.23e-01 6_[+2(2.80e-05)]_66 chr1:26465826-26465906 1.23e-02 46_[+2(1.41e-05)]_26 chr19:344939-345019 4.72e-01 80 chr15:30113620-30113700 3.49e-02 34_[+2(4.29e-05)]_38 chr6:43932096-43932176 8.12e-02 24_[+2(2.80e-05)]_48 chr19:10831438-10831518 1.61e-02 15_[+1(3.24e-05)]_57 chr1:16402297-16402377 4.06e-02 63_[+2(2.80e-05)]_9 chr20:335509-335589 2.16e-02 67_[+2(2.80e-05)]_5 chr10:21819258-21819338 4.65e-02 42_[+2(1.41e-05)]_30 chr17:26220456-26220536 1.92e-01 80 chr16:89253450-89253530 8.73e-01 80 chr1:16409040-16409120 1.29e-01 44_[+2(2.80e-05)]_28 chr11:78129326-78129406 4.85e-02 61_[+2(4.29e-05)]_11 chr6:112164898-112164978 7.07e-04 21_[+2(1.41e-05)]_51 chr2:85641364-85641444 7.23e-02 56_[+2(1.41e-05)]_16 chr9:71634822-71634902 2.55e-02 7_[+1(1.66e-05)]_65 chr16:25269770-25269850 9.12e-01 80 chr4:7077886-7077966 2.43e-01 5_[+2(8.69e-05)]_21_[+2(8.69e-05)]_\ 21_[+2(8.69e-05)]_9 chr2:242951235-242951315 5.61e-01 80 chr19:38734695-38734775 3.46e-02 30_[+2(2.80e-05)]_42 chr9:126101477-126101557 8.96e-02 80 chr19:14328125-14328205 4.22e-02 58_[+1(3.24e-05)]_14 chr15:42270316-42270396 4.76e-02 12_[+1(3.24e-05)]_60 chr10:97277366-97277446 6.41e-03 40_[+1(1.66e-05)]_32 chr19:5231986-5232066 4.20e-02 54_[+2(1.41e-05)]_18 chr1:19812621-19812701 2.09e-03 38_[+2(1.41e-05)]_34 chr11:61197762-61197842 6.05e-01 80 chr11:107436829-10743690 1.60e-03 41_[+3(9.20e-05)]_13_[+5(5.21e-05)]_\ 10 chr8:126676829-126676909 3.50e-03 18_[+4(8.75e-05)]_31_[+3(1.54e-05)]_\ 15 chr16:69344561-69344641 3.74e-02 22_[+1(1.66e-05)]_50 chr7:100425706-100425786 8.74e-02 63_[+2(2.80e-05)]_9 chr22:29702098-29702178 3.63e-02 80 chr15:67135544-67135624 1.56e-02 61_[+2(1.41e-05)]_11 chr5:34924188-34924268 1.18e-02 32_[+3(4.64e-05)]_4_[+3(3.06e-05)]_\ 28 chr11:61405784-61405864 4.32e-02 29_[+1(1.66e-05)]_43 chr8:126193282-126193362 8.85e-01 80 chr9:37840733-37840813 1.90e-01 16_[+3(7.68e-05)]_11_[+3(7.68e-05)]_\ 37 chr19:2489620-2489700 2.08e-01 8_[+2(2.80e-05)]_26_[+2(2.80e-05)]_\ 30 chr19:5233320-5233400 5.95e-02 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chr9:137326313-137326393 1.26e-01 80 chr16:1223911-1223991 1.32e-01 42_[+1(6.51e-05)]_30 chr17:44965174-44965254 3.42e-03 18_[+2(1.41e-05)]_54 chr20:33708086-33708166 2.70e-03 46_[+5(5.21e-05)]_5_[+3(6.20e-05)]_\ 13 chr19:19478085-19478165 1.53e-03 16_[+2(2.80e-05)]_56 chr8:66629751-66629831 7.16e-03 22_[+3(6.20e-05)]_50 chr16:81592415-81592495 4.99e-02 13_[+1(1.66e-05)]_59 chr7:26890091-26890171 1.52e-02 55_[+3(6.20e-05)]_17 chr1:87901347-87901427 4.48e-03 2_[+4(3.77e-05)]_70 chr15:52311105-52311185 1.86e-01 10_[+1(8.06e-05)]_62 chr3:5036288-5036368 5.19e-01 80 chr1:30664092-30664172 9.63e-03 47_[+3(1.54e-05)]_25 chr12:104802505-10480258 6.69e-03 9_[+3(6.20e-05)]_11_[+5(3.56e-05)]_\ 44 chr9:124049454-124049534 1.93e-02 28_[+3(3.06e-05)]_3_[+3(9.20e-05)]_\ 33 chr22:41107678-41107758 2.22e-03 27_[+3(4.64e-05)]_45 chr7:12991280-12991360 2.58e-02 35_[+3(6.20e-05)]_37 chr19:11205878-11205958 2.65e-03 9_[+3(4.64e-05)]_32_[+3(6.20e-05)]_\ 23 chr6:149440500-149440580 4.00e-03 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1.45e-01 80 chr5:172229748-172229828 4.66e-05 9_[+5(3.56e-05)]_27_[+3(4.64e-05)]_\ 1_[+1(6.51e-05)]_19 chr19:41172404-41172484 3.79e-02 41_[+3(9.20e-05)]_20_[+3(1.54e-05)]_\ 3 chr7:29686795-29686875 3.23e-05 2_[+3(6.20e-05)]_61_[+4(1.20e-05)]_\ 1 chr10:75639384-75639464 4.69e-01 80 chr3:179093038-179093118 2.87e-03 39_[+2(2.80e-05)]_33 chr20:3998884-3998964 9.99e-03 10_[+1(9.62e-05)]_62 chr2:26578484-26578564 8.87e-01 80 chr15:35849844-35849924 6.25e-03 4_[+3(4.64e-05)]_34_[+3(1.54e-05)]_\ 26 chrX:130086539-130086619 2.36e-02 53_[+4(1.20e-05)]_19 chr11:44355025-44355105 1.71e-03 39_[+3(3.06e-05)]_2_[+4(3.77e-05)]_\ 23 chr2:33175278-33175358 1.43e-01 80 chr7:32546018-32546098 1.15e-01 80 chr6:20458786-20458866 3.99e-02 42_[+4(3.77e-05)]_30 chr6:91078876-91078956 3.79e-03 6_[+3(1.54e-05)]_5_[+3(3.06e-05)]_\ 53 chr8:91200048-91200128 3.54e-04 52_[+3(1.54e-05)]_20 chr4:187766512-187766592 1.50e-01 80 chr2:170870526-170870606 2.20e-02 28_[+4(6.30e-05)]_44 chr11:74814647-74814727 8.74e-04 47_[+3(1.54e-05)]_17_[+5(5.21e-05)] chr2:38591464-38591544 6.29e-03 57_[+5(3.56e-05)]_15 chr5:79950620-79950700 9.48e-01 80 chr16:53089672-53089752 1.17e-01 27_[+1(1.66e-05)]_45 chr7:150736571-150736651 1.39e-01 18_[+3(3.06e-05)]_54 chr5:75668562-75668642 2.61e-02 1_[+3(9.20e-05)]_39_[+3(1.54e-05)]_\ 24 chr18:8913737-8913817 1.89e-01 80 chr9:108409949-108410029 1.82e-02 22_[+4(1.20e-05)]_50 chr11:94880745-94880825 4.53e-03 56_[+3(1.54e-05)]_16 chr1:153031899-153031979 1.15e-03 22_[+5(5.21e-05)]_6_[+3(9.20e-05)]_\ 36 chr11:61568239-61568319 8.91e-01 80 chr1:27400835-27400915 7.79e-03 28_[+3(4.64e-05)]_44 chr8:37939617-37939697 5.76e-02 80 chr11:100840548-10084062 1.26e-02 6_[+4(8.75e-05)]_16_[+3(4.64e-05)]_\ 42 chr18:9005581-9005661 1.46e-01 64_[+5(3.56e-05)]_8 chr20:34411226-34411306 7.10e-02 25_[+3(3.06e-05)]_47 chr7:123178371-123178451 1.75e-01 21_[+3(7.68e-05)]_51 chr20:57596220-57596300 2.14e-01 80 chr6:160992389-160992469 4.36e-02 25_[+4(6.30e-05)]_47 chr7:88319283-88319363 1.81e-02 80 chr1:36615458-36615538 4.62e-02 46_[+3(1.54e-05)]_26 chr20:31125174-31125254 4.54e-03 43_[+2(2.80e-05)]_29 chr9:111896497-111896577 2.07e-03 65_[+5(3.56e-05)]_7 chr1:44514089-44514169 1.25e-02 44_[+3(4.64e-05)]_28 chr9:136454715-136454795 4.13e-02 41_[+1(1.66e-05)]_31 chr1:246741164-246741244 5.14e-01 80 chr1:10571186-10571266 2.80e-02 12_[+3(1.54e-05)]_60 chr19:2161398-2161478 5.45e-02 42_[+3(6.20e-05)]_30 chr5:112378668-112378748 8.61e-02 80 chr2:162029747-162029827 5.65e-01 80 chr4:26703546-26703626 3.43e-02 72_[+5(3.56e-05)] chr2:219287349-219287429 3.03e-02 28_[+3(3.06e-05)]_44 chr5:71530169-71530249 1.38e-02 11_[+3(1.54e-05)]_61 chr16:75077165-75077245 3.43e-02 47_[+4(6.30e-05)]_25 chr9:101338784-101338864 3.90e-03 18_[+4(1.20e-05)]_54 chr7:111078714-111078794 2.43e-01 80 chr3:5043946-5044026 4.04e-01 80 chr8:108322707-108322787 2.45e-01 80 chr6:40683651-40683731 1.76e-02 57_[+5(3.56e-05)]_15 chrX:65382308-65382388 3.06e-01 80 chr17:39924068-39924148 8.89e-03 14_[+1(1.66e-05)]_58 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************