******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/DIDO1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:8594259-8594339 1.0000 80 chr1:17093243-17093323 1.0000 80 chr8:126575864-126575944 1.0000 80 chr20:18447947-18448027 1.0000 80 chr6:167364587-167364667 1.0000 80 chr6:33388967-33389047 1.0000 80 chr3:193923569-193923649 1.0000 80 chr13:53191597-53191677 1.0000 80 chr10:135201836-13520191 1.0000 80 chr16:19165347-19165427 1.0000 80 chr14:96087214-96087294 1.0000 80 chr12:101673934-10167401 1.0000 80 chr2:131100017-131100097 1.0000 80 chr20:40322146-40322226 1.0000 80 chr16:3162485-3162565 1.0000 80 chr1:203652021-203652101 1.0000 80 chr7:35734814-35734894 1.0000 80 chr1:78245274-78245354 1.0000 80 chr12:4647703-4647783 1.0000 80 chr18:73967151-73967231 1.0000 80 chr3:137906250-137906330 1.0000 80 chr1:142891042-142891122 1.0000 80 chr20:42073785-42073865 1.0000 80 chr1:241987423-241987503 1.0000 80 chr12:38710464-38710544 1.0000 80 chr20:46768423-46768503 1.0000 80 chr5:43067071-43067151 1.0000 80 chr2:118572412-118572492 1.0000 80 chr20:48532158-48532238 1.0000 80 chr1:154600462-154600542 1.0000 80 chr5:95043463-95043543 1.0000 80 chr9:6015572-6015652 1.0000 80 chrX:119077708-119077788 1.0000 80 chr1:16971113-16971193 1.0000 80 chr13:41345315-41345395 1.0000 80 chr22:19615322-19615402 1.0000 80 chr11:43333481-43333561 1.0000 80 chr9:131084764-131084844 1.0000 80 chr14:69291625-69291705 1.0000 80 chr13:41837657-41837737 1.0000 80 chr2:130201016-130201096 1.0000 80 chr4:107237518-107237598 1.0000 80 chr8:107072832-107072912 1.0000 80 chr5:143550163-143550243 1.0000 80 chr11:43665719-43665799 1.0000 80 chr17:63119301-63119381 1.0000 80 chrX:108780058-108780138 1.0000 80 chr10:15669687-15669767 1.0000 80 chr6:28219979-28220059 1.0000 80 chr19:8617796-8617876 1.0000 80 chr19:51373835-51373915 1.0000 80 chr6:5261785-5261865 1.0000 80 chr15:74988313-74988393 1.0000 80 chr10:114206838-11420691 1.0000 80 chr22:22973973-22974053 1.0000 80 chr15:66797488-66797568 1.0000 80 chr8:29474743-29474823 1.0000 80 chr16:5083882-5083962 1.0000 80 chr2:232651061-232651141 1.0000 80 chr1:155211036-155211116 1.0000 80 chr15:45876404-45876484 1.0000 80 chr1:247531129-247531209 1.0000 80 chr16:26981066-26981146 1.0000 80 chr1:7887465-7887545 1.0000 80 chr7:5553421-5553501 1.0000 80 chr6:164758825-164758905 1.0000 80 chr19:52290281-52290361 1.0000 80 chr7:142411590-142411670 1.0000 80 chr6:107077443-107077523 1.0000 80 chr7:38948729-38948809 1.0000 80 chr19:54020437-54020517 1.0000 80 chr2:68290096-68290176 1.0000 80 chr1:18748642-18748722 1.0000 80 chr19:37958369-37958449 1.0000 80 chr1:222763341-222763421 1.0000 80 chr11:43974597-43974677 1.0000 80 chr14:70826436-70826516 1.0000 80 chr11:43902240-43902320 1.0000 80 chr6:111303252-111303332 1.0000 80 chr5:124060785-124060865 1.0000 80 chr8:94886451-94886531 1.0000 80 chr19:44555757-44555837 1.0000 80 chr6:10147354-10147434 1.0000 80 chr7:7680535-7680615 1.0000 80 chr4:44680351-44680431 1.0000 80 chr2:197664415-197664495 1.0000 80 chr11:3531006-3531086 1.0000 80 chr11:36310940-36311020 1.0000 80 chr5:173314945-173315025 1.0000 80 chr19:605213-605293 1.0000 80 chr2:68384701-68384781 1.0000 80 chr12:96429453-96429533 1.0000 80 chr14:61201412-61201492 1.0000 80 chr15:90325468-90325548 1.0000 80 chr17:47154401-47154481 1.0000 80 chr15:60314163-60314243 1.0000 80 chr16:12704956-12705036 1.0000 80 chr11:36615952-36616032 1.0000 80 chr2:200820337-200820417 1.0000 80 chr2:201936580-201936660 1.0000 80 chr11:107436359-10743643 1.0000 80 chr12:34175330-34175410 1.0000 80 chr14:64830123-64830203 1.0000 80 chr12:96252664-96252744 1.0000 80 chr3:32090169-32090249 1.0000 80 chr9:134955231-134955311 1.0000 80 chr11:28131777-28131857 1.0000 80 chr7:97601644-97601724 1.0000 80 chr12:2922080-2922160 1.0000 80 chr1:70671534-70671614 1.0000 80 chr1:208067691-208067771 1.0000 80 chr3:88198998-88199078 1.0000 80 chr1:53480556-53480636 1.0000 80 chr14:103000352-10300043 1.0000 80 chr3:128880014-128880094 1.0000 80 chr12:96476899-96476979 1.0000 80 chr3:44482945-44483025 1.0000 80 chr4:25314590-25314670 1.0000 80 chr6:50995175-50995255 1.0000 80 chr1:145090170-145090250 1.0000 80 chr18:71815687-71815767 1.0000 80 chr8:98774872-98774952 1.0000 80 chr3:132379039-132379119 1.0000 80 chr2:70121012-70121092 1.0000 80 chr4:185261057-185261137 1.0000 80 chr13:45563595-45563675 1.0000 80 chr13:52768558-52768638 1.0000 80 chr19:3626805-3626885 1.0000 80 chr19:12780328-12780408 1.0000 80 chr6:30524175-30524255 1.0000 80 chr5:70694841-70694921 1.0000 80 chr14:23775963-23776043 1.0000 80 chr11:67331227-67331307 1.0000 80 chr16:1344225-1344305 1.0000 80 chr6:147770826-147770906 1.0000 80 chr18:67872942-67873022 1.0000 80 chr16:71496098-71496178 1.0000 80 chr6:164362038-164362118 1.0000 80 chr6:164361838-164361918 1.0000 80 chr17:63119507-63119587 1.0000 80 chrX:48455862-48455942 1.0000 80 chr5:74062978-74063058 1.0000 80 chr5:37379318-37379398 1.0000 80 chr16:30621725-30621805 1.0000 80 chr8:182394-182474 1.0000 80 chr19:9938473-9938553 1.0000 80 chr10:121765273-12176535 1.0000 80 chr19:44100576-44100656 1.0000 80 chr4:135248636-135248716 1.0000 80 chr17:46185212-46185292 1.0000 80 chr12:106751491-10675157 1.0000 80 chr7:20257075-20257155 1.0000 80 chr19:9649282-9649362 1.0000 80 chr19:56154914-56154994 1.0000 80 chr8:109455815-109455895 1.0000 80 chr6:167880228-167880308 1.0000 80 chr4:74962377-74962457 1.0000 80 chr7:39606012-39606092 1.0000 80 chr9:125675630-125675710 1.0000 80 chr3:15469072-15469152 1.0000 80 chr1:235752284-235752364 1.0000 80 chr2:224822120-224822200 1.0000 80 chr3:101362808-101362888 1.0000 80 chr12:131847307-13184738 1.0000 80 chr18:77439645-77439725 1.0000 80 chr4:148538585-148538665 1.0000 80 chr1:243265032-243265112 1.0000 80 chr16:77773608-77773688 1.0000 80 chr12:89919885-89919965 1.0000 80 chr10:7057534-7057614 1.0000 80 chr1:40840243-40840323 1.0000 80 chr6:111140858-111140938 1.0000 80 chr10:45906738-45906818 1.0000 80 chr1:75198859-75198939 1.0000 80 chr7:142424518-142424598 1.0000 80 chr2:27994691-27994771 1.0000 80 chr9:99445978-99446058 1.0000 80 chr18:21544391-21544471 1.0000 80 chr20:49955669-49955749 1.0000 80 chr1:27227101-27227181 1.0000 80 chr1:7072620-7072700 1.0000 80 chr12:121455855-12145593 1.0000 80 chr2:61244349-61244429 1.0000 80 chr3:112280805-112280885 1.0000 80 chr3:99495971-99496051 1.0000 80 chr11:36531731-36531811 1.0000 80 chr1:151735988-151736068 1.0000 80 chr16:20956267-20956347 1.0000 80 chr9:131084964-131085044 1.0000 80 chr5:102392981-102393061 1.0000 80 chrX:3488843-3488923 1.0000 80 chr5:73887751-73887831 1.0000 80 chr13:64848859-64848939 1.0000 80 chr22:43539418-43539498 1.0000 80 chr17:61904472-61904552 1.0000 80 chr3:183165518-183165598 1.0000 80 chr19:12833499-12833579 1.0000 80 chr15:40861503-40861583 1.0000 80 chr1:762770-762850 1.0000 80 chr12:116994326-11699440 1.0000 80 chr5:90587963-90588043 1.0000 80 chr12:109490309-10949038 1.0000 80 chr19:51497564-51497644 1.0000 80 chr1:2517320-2517400 1.0000 80 chr2:110962624-110962704 1.0000 80 chr15:57076407-57076487 1.0000 80 chr2:178483586-178483666 1.0000 80 chr11:100885507-10088558 1.0000 80 chr1:236030451-236030531 1.0000 80 chr14:93042239-93042319 1.0000 80 chr19:5903864-5903944 1.0000 80 chr12:89920090-89920170 1.0000 80 chr14:103017335-10301741 1.0000 80 chr12:107487483-10748756 1.0000 80 chr11:46958181-46958261 1.0000 80 chr12:48500054-48500134 1.0000 80 chr7:76751660-76751740 1.0000 80 chr14:21945326-21945406 1.0000 80 chrX:103401445-103401525 1.0000 80 chr9:99776081-99776161 1.0000 80 chr10:134791415-13479149 1.0000 80 chr8:121457465-121457545 1.0000 80 chr4:164088091-164088171 1.0000 80 chr6:33257229-33257309 1.0000 80 chr7:156713317-156713397 1.0000 80 chr5:93954327-93954407 1.0000 80 chr12:107427718-10742779 1.0000 80 chr11:86648399-86648479 1.0000 80 chr5:5586036-5586116 1.0000 80 chr22:22523073-22523153 1.0000 80 chr17:47785400-47785480 1.0000 80 chr1:199901296-199901376 1.0000 80 chr3:124449318-124449398 1.0000 80 chr2:143688691-143688771 1.0000 80 chr2:110970077-110970157 1.0000 80 chr21:38939252-38939332 1.0000 80 chr19:47987452-47987532 1.0000 80 chr12:121454242-12145432 1.0000 80 chr1:36023217-36023297 1.0000 80 chr1:155188777-155188857 1.0000 80 chr12:133562934-13356301 1.0000 80 chr13:37574757-37574837 1.0000 80 chr3:45102764-45102844 1.0000 80 chr11:45376890-45376970 1.0000 80 chr9:102064175-102064255 1.0000 80 chr5:74063177-74063257 1.0000 80 chr1:32110726-32110806 1.0000 80 chr19:36119907-36119987 1.0000 80 chr9:132913358-132913438 1.0000 80 chr14:69658204-69658284 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_DIDO1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/DIDO1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.215 C 0.277 G 0.283 T 0.224 Background letter frequencies (from file dataset with add-one prior applied): A 0.215 C 0.277 G 0.283 T 0.224 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCATCTTG MEME-1 width = 8 sites = 42 llr = 402 E-value = 1.1e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::::1 pos.-specific C aa:17::: probability G :::::::9 matrix T :::92aa: bits 2.2 ** 2.0 * ** 1.8 **** ** 1.6 **** ** Relative 1.3 **** *** Entropy 1.1 **** *** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCATCTTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:102064175-102064255 47 1.45e-05 cagagggact ccatcttg aacaggggct chr3:45102764-45102844 41 1.45e-05 cagagtgact ccatcttg aataggggct chr12:121454242-12145432 32 1.45e-05 CTGGGCGCCG CCATCTTG AACCACCGCA chr11:86648399-86648479 36 1.45e-05 cagagcaact ccatcttg agtaggggct chr6:33257229-33257309 5 1.45e-05 TTCC CCATCTTG CCTAAAAATG chr11:100885507-10088558 1 1.45e-05 . ccatcttg aataggggct chr15:57076407-57076487 43 1.45e-05 aagagcaact ccatcttg aataggggct chrX:3488843-3488923 36 1.45e-05 cacagcaact ccatcttg aataggggct chr5:102392981-102393061 66 1.45e-05 gagagctaca ccatcttg aatgggg chr16:20956267-20956347 57 1.45e-05 cagagcaact ccatcttg tatagggact chr6:111140858-111140938 30 1.45e-05 cacagtgact ccatcttg aatagggtag chr3:101362808-101362888 54 1.45e-05 cagagtgact ccatcttg aataggggct chrX:48455862-48455942 36 1.45e-05 TAGCAGGCAG CCATCTTG CCTGGAGCCT chr11:67331227-67331307 63 1.45e-05 cagagcaatt ccatcttg aatgacctac chr5:70694841-70694921 68 1.45e-05 cacagcaact ccatcttg agtag chr8:98774872-98774952 23 1.45e-05 cacagtgact ccatcttg aataggggct chr12:96476899-96476979 43 1.45e-05 cagagtaact ccatcttg aataggggct chr14:64830123-64830203 48 1.45e-05 cagagcaact ccatcttg aataggggct chr11:36310940-36311020 19 1.45e-05 GTCAGGGCAG CCATCTTG CCGAAGTCAC chr11:43974597-43974677 43 1.45e-05 cagagcgact ccatcttg aacagaggct chr1:18748642-18748722 60 1.45e-05 aagagtgact ccatcttg aatacagggt chr6:164758825-164758905 49 1.45e-05 cagagcgact ccatcttg aataggggct chr8:29474743-29474823 41 1.45e-05 cagagcaact ccatcttg aatagggact chr14:103017335-10301741 68 2.63e-05 cagagcaact ccattttg aatag chr17:61904472-61904552 44 2.63e-05 AGGTTTTCCG CCATTTTG AGTGTGGCCC chr12:121455855-12145593 20 2.63e-05 ataagtgact ccattttg atactgataa chr9:99445978-99446058 2 2.63e-05 t ccattttg aatttgacaa chr4:74962377-74962457 8 2.63e-05 ctcagcc ccattttg cctagcccct chr3:32090169-32090249 41 2.63e-05 cagagcaact ccattttg aataggggct chr2:131100017-131100097 27 2.63e-05 TCTACAGAAA CCATTTTG GTTGAGGGAA chr12:107427718-10742779 30 3.73e-05 cagagtgact ccatctta aatagggcct chr7:142411590-142411670 44 3.73e-05 cacagcaact ccatctta aataggagct chr16:26981066-26981146 27 3.73e-05 cagagcgact ccatctta aataggggct chr13:37574757-37574837 73 5.53e-05 CGTCGCGTCC CCACCTTG chr16:77773608-77773688 55 5.53e-05 gatactggag ccaccttg ccatgtgtcc chr20:40322146-40322226 49 6.42e-05 TATGGGGGAT CCATTTTA CCCACCGTAC chr9:125675630-125675710 68 9.42e-05 CTCACTTCCC CCCTCTTG GAATG chr7:7680535-7680615 66 9.42e-05 GTCTCGCCTT CCCTCTTG CCAGTTC chr16:5083882-5083962 30 9.42e-05 GTGGAGGTCG CCATATTG GACCGGGGCC chr7:5553421-5553501 73 1.09e-04 TAGGCGGCCG CCATGTTG chr6:147770826-147770906 8 1.21e-04 tgacctc ctatcttg tcctgtgact chr11:46958181-46958261 27 1.35e-04 GTGGCCAGCT CCACTTTG CGACACGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:102064175-102064255 1.5e-05 46_[+1]_26 chr3:45102764-45102844 1.5e-05 40_[+1]_32 chr12:121454242-12145432 1.5e-05 31_[+1]_41 chr11:86648399-86648479 1.5e-05 35_[+1]_37 chr6:33257229-33257309 1.5e-05 4_[+1]_68 chr11:100885507-10088558 1.5e-05 [+1]_72 chr15:57076407-57076487 1.5e-05 42_[+1]_30 chrX:3488843-3488923 1.5e-05 35_[+1]_37 chr5:102392981-102393061 1.5e-05 65_[+1]_7 chr16:20956267-20956347 1.5e-05 56_[+1]_16 chr6:111140858-111140938 1.5e-05 29_[+1]_43 chr3:101362808-101362888 1.5e-05 53_[+1]_19 chrX:48455862-48455942 1.5e-05 35_[+1]_37 chr11:67331227-67331307 1.5e-05 62_[+1]_10 chr5:70694841-70694921 1.5e-05 67_[+1]_5 chr8:98774872-98774952 1.5e-05 22_[+1]_50 chr12:96476899-96476979 1.5e-05 42_[+1]_30 chr14:64830123-64830203 1.5e-05 47_[+1]_25 chr11:36310940-36311020 1.5e-05 18_[+1]_54 chr11:43974597-43974677 1.5e-05 42_[+1]_30 chr1:18748642-18748722 1.5e-05 59_[+1]_13 chr6:164758825-164758905 1.5e-05 48_[+1]_24 chr8:29474743-29474823 1.5e-05 40_[+1]_32 chr14:103017335-10301741 2.6e-05 67_[+1]_5 chr17:61904472-61904552 2.6e-05 43_[+1]_29 chr12:121455855-12145593 2.6e-05 19_[+1]_53 chr9:99445978-99446058 2.6e-05 1_[+1]_71 chr4:74962377-74962457 2.6e-05 7_[+1]_65 chr3:32090169-32090249 2.6e-05 40_[+1]_32 chr2:131100017-131100097 2.6e-05 26_[+1]_46 chr12:107427718-10742779 3.7e-05 29_[+1]_43 chr7:142411590-142411670 3.7e-05 43_[+1]_29 chr16:26981066-26981146 3.7e-05 26_[+1]_46 chr13:37574757-37574837 5.5e-05 72_[+1] chr16:77773608-77773688 5.5e-05 54_[+1]_18 chr20:40322146-40322226 6.4e-05 48_[+1]_24 chr9:125675630-125675710 9.4e-05 67_[+1]_5 chr7:7680535-7680615 9.4e-05 65_[+1]_7 chr16:5083882-5083962 9.4e-05 29_[+1]_43 chr7:5553421-5553501 0.00011 72_[+1] chr6:147770826-147770906 0.00012 7_[+1]_65 chr11:46958181-46958261 0.00014 26_[+1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATCTTG width=8 seqs=42 chr9:102064175-102064255 ( 47) CCATCTTG 1 chr3:45102764-45102844 ( 41) CCATCTTG 1 chr12:121454242-12145432 ( 32) CCATCTTG 1 chr11:86648399-86648479 ( 36) CCATCTTG 1 chr6:33257229-33257309 ( 5) CCATCTTG 1 chr11:100885507-10088558 ( 1) CCATCTTG 1 chr15:57076407-57076487 ( 43) CCATCTTG 1 chrX:3488843-3488923 ( 36) CCATCTTG 1 chr5:102392981-102393061 ( 66) CCATCTTG 1 chr16:20956267-20956347 ( 57) CCATCTTG 1 chr6:111140858-111140938 ( 30) CCATCTTG 1 chr3:101362808-101362888 ( 54) CCATCTTG 1 chrX:48455862-48455942 ( 36) CCATCTTG 1 chr11:67331227-67331307 ( 63) CCATCTTG 1 chr5:70694841-70694921 ( 68) CCATCTTG 1 chr8:98774872-98774952 ( 23) CCATCTTG 1 chr12:96476899-96476979 ( 43) CCATCTTG 1 chr14:64830123-64830203 ( 48) CCATCTTG 1 chr11:36310940-36311020 ( 19) CCATCTTG 1 chr11:43974597-43974677 ( 43) CCATCTTG 1 chr1:18748642-18748722 ( 60) CCATCTTG 1 chr6:164758825-164758905 ( 49) CCATCTTG 1 chr8:29474743-29474823 ( 41) CCATCTTG 1 chr14:103017335-10301741 ( 68) CCATTTTG 1 chr17:61904472-61904552 ( 44) CCATTTTG 1 chr12:121455855-12145593 ( 20) CCATTTTG 1 chr9:99445978-99446058 ( 2) CCATTTTG 1 chr4:74962377-74962457 ( 8) CCATTTTG 1 chr3:32090169-32090249 ( 41) CCATTTTG 1 chr2:131100017-131100097 ( 27) CCATTTTG 1 chr12:107427718-10742779 ( 30) CCATCTTA 1 chr7:142411590-142411670 ( 44) CCATCTTA 1 chr16:26981066-26981146 ( 27) CCATCTTA 1 chr13:37574757-37574837 ( 73) CCACCTTG 1 chr16:77773608-77773688 ( 55) CCACCTTG 1 chr20:40322146-40322226 ( 49) CCATTTTA 1 chr9:125675630-125675710 ( 68) CCCTCTTG 1 chr7:7680535-7680615 ( 66) CCCTCTTG 1 chr16:5083882-5083962 ( 30) CCATATTG 1 chr7:5553421-5553501 ( 73) CCATGTTG 1 chr6:147770826-147770906 ( 8) CTATCTTG 1 chr11:46958181-46958261 ( 27) CCACTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.06546 E= 1.1e-032 -1204 185 -1204 -1204 -1204 182 -1204 -323 214 -254 -1204 -1204 -1204 -195 -1204 205 -318 141 -357 -7 -1204 -1204 -1204 216 -1204 -1204 -1204 216 -118 -1204 167 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.1e-032 0.000000 1.000000 0.000000 0.000000 0.000000 0.976190 0.000000 0.023810 0.952381 0.047619 0.000000 0.000000 0.000000 0.071429 0.000000 0.928571 0.023810 0.738095 0.023810 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.095238 0.000000 0.904762 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTTG MEME-1 regular expression -------------------------------------------------------------------------------- CCAT[CT]TTG -------------------------------------------------------------------------------- Time 4.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GAACCAGA MEME-2 width = 8 sites = 29 llr = 297 E-value = 2.0e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :aa:1a:a pos.-specific C :::99:2: probability G a::1::8: matrix T :::::::: bits 2.2 ** * * 2.0 ** * * 1.8 *** * * 1.6 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAACCAGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:102064175-102064255 33 1.31e-05 agaggcattt gaaccaga gggactccat chr3:45102764-45102844 27 1.31e-05 agaggcattt gaaccaga gtgactccat chr5:5586036-5586116 10 1.31e-05 tctttcatt gaaccaga gctactccat chr11:86648399-86648479 22 1.31e-05 agaggcgtct gaaccaga gcaactccat chr12:107427718-10742779 16 1.31e-05 acaggcattt gaaccaga gtgactccat chr14:103017335-10301741 54 1.31e-05 agaggcattt gaaccaga gcaactccat chr16:20956267-20956347 43 1.31e-05 agaggcattc gaaccaga gcaactccat chr3:101362808-101362888 40 1.31e-05 agagctgtta gaaccaga gtgactccat chr6:164361838-164361918 70 1.31e-05 aaaggtgatt gaaccaga gcg chr11:67331227-67331307 49 1.31e-05 agaggcattt gaaccaga gcaattccat chr12:96476899-96476979 29 1.31e-05 agaggtgttt gaaccaga gtaactccat chr3:32090169-32090249 27 1.31e-05 agaggtgttt gaaccaga gcaactccat chr14:64830123-64830203 34 1.31e-05 agaggcatta gaaccaga gcaactccat chr16:12704956-12705036 63 1.31e-05 agagggattt gaaccaga gcaactccat chr15:90325468-90325548 66 1.31e-05 agaggtgttt gaaccaga gcgattc chr11:43974597-43974677 29 1.31e-05 agaggcattt gaaccaga gcgactccat chr6:164758825-164758905 35 1.31e-05 agaggtattt gaaccaga gcgactccat chr16:26981066-26981146 13 1.31e-05 agaggtgttc gaaccaga gcgactccat chr8:29474743-29474823 27 1.31e-05 agagatgttc gaaccaga gcaactccat chrX:3488843-3488923 22 2.60e-05 agagacattt gaaccaca gcaactccat chr6:111140858-111140938 16 2.60e-05 tcaggcattt gaaccaca gtgactccat chr5:70694841-70694921 54 2.60e-05 agaggccttt gaaccaca gcaactccat chr8:98774872-98774952 9 2.60e-05 aggcgttg gaaccaca gtgactccat chr3:88198998-88199078 12 2.60e-05 CCCCAGCCCG GAACCACA AGTGAGGGCA chr7:142411590-142411670 30 2.60e-05 agagacatgt gaaccaca gcaactccat chr15:57076407-57076487 29 3.62e-05 agaggcattt gaacaaga gcaactccat chr1:18748642-18748722 46 3.62e-05 aggggcgttt gaacaaga gtgactccat chr7:156713317-156713397 48 4.96e-05 ttaggtagcc gaagcaga gagggaaggc chr7:39606012-39606092 72 4.96e-05 GTTTGACGAA GAAGCAGA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:102064175-102064255 1.3e-05 32_[+2]_40 chr3:45102764-45102844 1.3e-05 26_[+2]_46 chr5:5586036-5586116 1.3e-05 9_[+2]_63 chr11:86648399-86648479 1.3e-05 21_[+2]_51 chr12:107427718-10742779 1.3e-05 15_[+2]_57 chr14:103017335-10301741 1.3e-05 53_[+2]_19 chr16:20956267-20956347 1.3e-05 42_[+2]_30 chr3:101362808-101362888 1.3e-05 39_[+2]_33 chr6:164361838-164361918 1.3e-05 69_[+2]_3 chr11:67331227-67331307 1.3e-05 48_[+2]_24 chr12:96476899-96476979 1.3e-05 28_[+2]_44 chr3:32090169-32090249 1.3e-05 26_[+2]_46 chr14:64830123-64830203 1.3e-05 33_[+2]_39 chr16:12704956-12705036 1.3e-05 62_[+2]_10 chr15:90325468-90325548 1.3e-05 65_[+2]_7 chr11:43974597-43974677 1.3e-05 28_[+2]_44 chr6:164758825-164758905 1.3e-05 34_[+2]_38 chr16:26981066-26981146 1.3e-05 12_[+2]_60 chr8:29474743-29474823 1.3e-05 26_[+2]_46 chrX:3488843-3488923 2.6e-05 21_[+2]_51 chr6:111140858-111140938 2.6e-05 15_[+2]_57 chr5:70694841-70694921 2.6e-05 53_[+2]_19 chr8:98774872-98774952 2.6e-05 8_[+2]_64 chr3:88198998-88199078 2.6e-05 11_[+2]_61 chr7:142411590-142411670 2.6e-05 29_[+2]_43 chr15:57076407-57076487 3.6e-05 28_[+2]_44 chr1:18748642-18748722 3.6e-05 45_[+2]_27 chr7:156713317-156713397 5e-05 47_[+2]_25 chr7:39606012-39606092 5e-05 71_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAACCAGA width=8 seqs=29 chr9:102064175-102064255 ( 33) GAACCAGA 1 chr3:45102764-45102844 ( 27) GAACCAGA 1 chr5:5586036-5586116 ( 10) GAACCAGA 1 chr11:86648399-86648479 ( 22) GAACCAGA 1 chr12:107427718-10742779 ( 16) GAACCAGA 1 chr14:103017335-10301741 ( 54) GAACCAGA 1 chr16:20956267-20956347 ( 43) GAACCAGA 1 chr3:101362808-101362888 ( 40) GAACCAGA 1 chr6:164361838-164361918 ( 70) GAACCAGA 1 chr11:67331227-67331307 ( 49) GAACCAGA 1 chr12:96476899-96476979 ( 29) GAACCAGA 1 chr3:32090169-32090249 ( 27) GAACCAGA 1 chr14:64830123-64830203 ( 34) GAACCAGA 1 chr16:12704956-12705036 ( 63) GAACCAGA 1 chr15:90325468-90325548 ( 66) GAACCAGA 1 chr11:43974597-43974677 ( 29) GAACCAGA 1 chr6:164758825-164758905 ( 35) GAACCAGA 1 chr16:26981066-26981146 ( 13) GAACCAGA 1 chr8:29474743-29474823 ( 27) GAACCAGA 1 chrX:3488843-3488923 ( 22) GAACCACA 1 chr6:111140858-111140938 ( 16) GAACCACA 1 chr5:70694841-70694921 ( 54) GAACCACA 1 chr8:98774872-98774952 ( 9) GAACCACA 1 chr3:88198998-88199078 ( 12) GAACCACA 1 chr7:142411590-142411670 ( 30) GAACCACA 1 chr15:57076407-57076487 ( 29) GAACAAGA 1 chr1:18748642-18748722 ( 46) GAACAAGA 1 chr7:156713317-156713397 ( 48) GAAGCAGA 1 chr7:39606012-39606092 ( 72) GAAGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 2.0e-022 -1150 -1150 182 -1150 221 -1150 -1150 -1150 221 -1150 -1150 -1150 -1150 175 -204 -1150 -164 175 -1150 -1150 221 -1150 -1150 -1150 -1150 -42 148 -1150 221 -1150 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.0e-022 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.931034 0.068966 0.000000 0.068966 0.931034 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.206897 0.793103 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-2 regular expression -------------------------------------------------------------------------------- GAACCA[GC]A -------------------------------------------------------------------------------- Time 8.33 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGKTAA MEME-3 width = 8 sites = 35 llr = 322 E-value = 5.4e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::17a pos.-specific C a:::1:3: probability G ::aa6::: matrix T :a::39:: bits 2.2 * * 2.0 * * 1.8 ** * * * 1.6 **** * * Relative 1.3 **** *** Entropy 1.1 **** *** (13.3 bits) 0.9 **** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGGGTAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:102064175-102064255 63 1.46e-05 tgaacagggg ctgggtaa aataaggccg chr3:45102764-45102844 57 1.46e-05 tgaatagggg ctgggtaa aatgaggctg chr11:86648399-86648479 52 1.46e-05 tgagtagggg ctgggtaa aataaggctg chr11:100885507-10088558 17 1.46e-05 tgaatagggg ctgggtaa aataaggctg chr15:57076407-57076487 59 1.46e-05 tgaatagggg ctgggtaa attgagtctg chrX:3488843-3488923 52 1.46e-05 tgaatagggg ctgggtaa aatgaggctg chr16:20956267-20956347 73 1.46e-05 tgtataggga ctgggtaa chr3:101362808-101362888 70 1.46e-05 tgaatagggg ctgggtaa aat chr1:145090170-145090250 4 1.46e-05 ggg ctgggtaa aatgaggctg chr12:96476899-96476979 59 1.46e-05 tgaatagggg ctgggtaa aataaggctg chr3:32090169-32090249 57 1.46e-05 tgaatagggg ctgggtaa aataaggctg chr14:64830123-64830203 64 1.46e-05 tgaatagggg ctgggtaa agtaaggct chr11:43974597-43974677 59 1.46e-05 tgaacagagg ctgggtaa aataaggctg chr7:142411590-142411670 60 1.46e-05 taaataggag ctgggtaa aataaggttg chr6:164758825-164758905 65 1.46e-05 tgaatagggg ctgggtaa aatgaggc chr16:26981066-26981146 43 1.46e-05 taaatagggg ctgggtaa ataaaataat chr8:29474743-29474823 57 1.46e-05 tgaataggga ctgggtaa aataaggcga chr4:74962377-74962457 44 2.61e-05 tggagttgct ctggttaa aacgtctctg chr6:111303252-111303332 29 2.61e-05 TGCATGCCCC CTGGTTAA GAGTTGCAGG chr14:93042239-93042319 29 5.97e-05 gggggtcact ctggttca gacgGACACT chr5:73887751-73887831 20 5.97e-05 tggagttgct ctggttca catgcctctg chr12:131847307-13184738 32 5.97e-05 tggagtcact ctggttca aacgtctctg chr16:1344225-1344305 35 5.97e-05 tggagttgct ctggttca cacgcctctg chr3:44482945-44483025 55 5.97e-05 tggagtcact ctggttca aacgcctctg chr14:103000352-10300043 8 5.97e-05 agttgct ctggttca cacaactcaa chr17:47154401-47154481 30 5.97e-05 tggagtcgct ctggttca aacaactctg chr13:41837657-41837737 65 5.97e-05 CGTTCACTTC CTGGTTCA CTTCTTCC chr20:46768423-46768503 72 5.97e-05 tggagttgct ctggttca a chr6:164362038-164362118 39 7.40e-05 ggtaaagaag ctggctaa aacccaccaa chr22:19615322-19615402 47 7.40e-05 gccaccgcgc ctggctaa ttttttgtat chr2:201936580-201936660 15 9.90e-05 TGCACATATA CTGGGAAA ATAATCGACT chr2:197664415-197664495 33 9.90e-05 CGGCGTCCTT CTGGGAAA CTCGCCCGGT chr8:126575864-126575944 49 9.90e-05 AAGTGTTACC CTGGATAA GGTCCCTCCT chr15:45876404-45876484 38 1.28e-04 tggagttgct ctggctca aatgcctctg chr8:98774872-98774952 39 1.39e-04 tgaatagggg ctaggtaa aatgaggctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:102064175-102064255 1.5e-05 62_[+3]_10 chr3:45102764-45102844 1.5e-05 56_[+3]_16 chr11:86648399-86648479 1.5e-05 51_[+3]_21 chr11:100885507-10088558 1.5e-05 16_[+3]_56 chr15:57076407-57076487 1.5e-05 58_[+3]_14 chrX:3488843-3488923 1.5e-05 51_[+3]_21 chr16:20956267-20956347 1.5e-05 72_[+3] chr3:101362808-101362888 1.5e-05 69_[+3]_3 chr1:145090170-145090250 1.5e-05 3_[+3]_69 chr12:96476899-96476979 1.5e-05 58_[+3]_14 chr3:32090169-32090249 1.5e-05 56_[+3]_16 chr14:64830123-64830203 1.5e-05 63_[+3]_9 chr11:43974597-43974677 1.5e-05 58_[+3]_14 chr7:142411590-142411670 1.5e-05 59_[+3]_13 chr6:164758825-164758905 1.5e-05 64_[+3]_8 chr16:26981066-26981146 1.5e-05 42_[+3]_30 chr8:29474743-29474823 1.5e-05 56_[+3]_16 chr4:74962377-74962457 2.6e-05 43_[+3]_29 chr6:111303252-111303332 2.6e-05 28_[+3]_44 chr14:93042239-93042319 6e-05 28_[+3]_44 chr5:73887751-73887831 6e-05 19_[+3]_53 chr12:131847307-13184738 6e-05 31_[+3]_41 chr16:1344225-1344305 6e-05 34_[+3]_38 chr3:44482945-44483025 6e-05 54_[+3]_18 chr14:103000352-10300043 6e-05 7_[+3]_65 chr17:47154401-47154481 6e-05 29_[+3]_43 chr13:41837657-41837737 6e-05 64_[+3]_8 chr20:46768423-46768503 6e-05 71_[+3]_1 chr6:164362038-164362118 7.4e-05 38_[+3]_34 chr22:19615322-19615402 7.4e-05 46_[+3]_26 chr2:201936580-201936660 9.9e-05 14_[+3]_58 chr2:197664415-197664495 9.9e-05 32_[+3]_40 chr8:126575864-126575944 9.9e-05 48_[+3]_24 chr15:45876404-45876484 0.00013 37_[+3]_35 chr8:98774872-98774952 0.00014 38_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGKTAA width=8 seqs=35 chr9:102064175-102064255 ( 63) CTGGGTAA 1 chr3:45102764-45102844 ( 57) CTGGGTAA 1 chr11:86648399-86648479 ( 52) CTGGGTAA 1 chr11:100885507-10088558 ( 17) CTGGGTAA 1 chr15:57076407-57076487 ( 59) CTGGGTAA 1 chrX:3488843-3488923 ( 52) CTGGGTAA 1 chr16:20956267-20956347 ( 73) CTGGGTAA 1 chr3:101362808-101362888 ( 70) CTGGGTAA 1 chr1:145090170-145090250 ( 4) CTGGGTAA 1 chr12:96476899-96476979 ( 59) CTGGGTAA 1 chr3:32090169-32090249 ( 57) CTGGGTAA 1 chr14:64830123-64830203 ( 64) CTGGGTAA 1 chr11:43974597-43974677 ( 59) CTGGGTAA 1 chr7:142411590-142411670 ( 60) CTGGGTAA 1 chr6:164758825-164758905 ( 65) CTGGGTAA 1 chr16:26981066-26981146 ( 43) CTGGGTAA 1 chr8:29474743-29474823 ( 57) CTGGGTAA 1 chr4:74962377-74962457 ( 44) CTGGTTAA 1 chr6:111303252-111303332 ( 29) CTGGTTAA 1 chr14:93042239-93042319 ( 29) CTGGTTCA 1 chr5:73887751-73887831 ( 20) CTGGTTCA 1 chr12:131847307-13184738 ( 32) CTGGTTCA 1 chr16:1344225-1344305 ( 35) CTGGTTCA 1 chr3:44482945-44483025 ( 55) CTGGTTCA 1 chr14:103000352-10300043 ( 8) CTGGTTCA 1 chr17:47154401-47154481 ( 30) CTGGTTCA 1 chr13:41837657-41837737 ( 65) CTGGTTCA 1 chr20:46768423-46768503 ( 72) CTGGTTCA 1 chr6:164362038-164362118 ( 39) CTGGCTAA 1 chr22:19615322-19615402 ( 47) CTGGCTAA 1 chr2:201936580-201936660 ( 15) CTGGGAAA 1 chr2:197664415-197664495 ( 33) CTGGGAAA 1 chr8:126575864-126575944 ( 49) CTGGATAA 1 chr15:45876404-45876484 ( 38) CTGGCTCA 1 chr8:98774872-98774952 ( 39) CTAGGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.28805 E= 5.4e-016 -1177 185 -1177 -1177 -1177 -1177 -1177 216 -291 -1177 178 -1177 -1177 -1177 182 -1177 -291 -169 101 49 -191 -1177 -1177 207 173 5 -1177 -1177 221 -1177 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 5.4e-016 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.028571 0.000000 0.971429 0.000000 0.000000 0.000000 1.000000 0.000000 0.028571 0.085714 0.571429 0.314286 0.057143 0.000000 0.000000 0.942857 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTAA MEME-3 regular expression -------------------------------------------------------------------------------- CTGG[GT]T[AC]A -------------------------------------------------------------------------------- Time 11.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCAGAG MEME-4 width = 8 sites = 27 llr = 263 E-value = 7.1e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1::a1a: pos.-specific C :::a:1:: probability G :9:::9:a matrix T a:a::::: bits 2.2 * * 2.0 * * * * 1.8 * * * * 1.6 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTCAGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:102064175-102064255 19 1.46e-05 CTACCCCCAC tgtcagag gcatttgaac chr11:86648399-86648479 8 1.46e-05 ATAGAAT tgtcagag gcgtctgaac chr14:103017335-10301741 40 1.46e-05 TGATTCTGGC tgtcagag gcatttgaac chr15:57076407-57076487 15 1.46e-05 CAGAAAGAAG tgtcagag gcatttgaac chr5:102392981-102393061 38 1.46e-05 aagagtaact tgtcagag acatctgaac chr16:20956267-20956347 29 1.46e-05 catcccaaac tgtcagag gcattcgaac chr3:101362808-101362888 26 1.46e-05 ccatcaatga tgtcagag ctgttagaac chr11:67331227-67331307 35 1.46e-05 cagcttgtga tgtcagag gcatttgaac chr5:70694841-70694921 40 1.46e-05 tttttcctta tgtcagag gcctttgaac chr12:96476899-96476979 15 1.46e-05 CAGAGAAGGT tgtcagag gtgtttgaac chr3:32090169-32090249 13 1.46e-05 CAGCTGGTCA tgtcagag gtgtttgaac chr14:64830123-64830203 20 1.46e-05 CAGGAGGTTC tgtcagag gcattagaac chr16:12704956-12705036 49 1.46e-05 GTCATAATGG tgtcagag ggatttgaac chr11:43974597-43974677 15 1.46e-05 tatccctgtc tgtcagag gcatttgaac chr7:142411590-142411670 16 1.46e-05 AGGGTGGATT tgtcagag acatgtgaac chr8:29474743-29474823 13 1.46e-05 ATGCTGACAT tgtcagag atgttcgaac chr10:15669687-15669767 63 1.46e-05 TGCCTCCTAC tgtcagag gcatttgaac chr6:164361838-164361918 56 2.56e-05 AAGGCAGGGG tgtcaaag gtgattgaac chr9:6015572-6015652 43 2.56e-05 CATTGCGCTC TGTCAAAG CTACCGCGAC chr3:45102764-45102844 13 3.67e-05 caattcacta tatcagag gcatttgaac chr6:164758825-164758905 21 3.67e-05 TCCCTCTCTG tatcagag gtatttgaac chr12:107427718-10742779 2 5.09e-05 c tgtcacag gcatttgaac chr5:143550163-143550243 35 5.09e-05 CGTTGCTACG TGTCACAG GGCCAAAGAA chr6:33257229-33257309 64 6.20e-05 TCCCTAAACA TGTCAGAA CTACACTTC chr19:12780328-12780408 4 7.60e-05 TCA TGACAGAG GCTTGGACTC chr1:241987423-241987503 7 9.09e-05 CGGATC TGTGAGAG ACATTTTTTA chr1:7887465-7887545 34 1.10e-04 GGGCTGCCCT TGTCCGAG GGCTTGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:102064175-102064255 1.5e-05 18_[+4]_54 chr11:86648399-86648479 1.5e-05 7_[+4]_65 chr14:103017335-10301741 1.5e-05 39_[+4]_33 chr15:57076407-57076487 1.5e-05 14_[+4]_58 chr5:102392981-102393061 1.5e-05 37_[+4]_35 chr16:20956267-20956347 1.5e-05 28_[+4]_44 chr3:101362808-101362888 1.5e-05 25_[+4]_47 chr11:67331227-67331307 1.5e-05 34_[+4]_38 chr5:70694841-70694921 1.5e-05 39_[+4]_33 chr12:96476899-96476979 1.5e-05 14_[+4]_58 chr3:32090169-32090249 1.5e-05 12_[+4]_60 chr14:64830123-64830203 1.5e-05 19_[+4]_53 chr16:12704956-12705036 1.5e-05 48_[+4]_24 chr11:43974597-43974677 1.5e-05 14_[+4]_58 chr7:142411590-142411670 1.5e-05 15_[+4]_57 chr8:29474743-29474823 1.5e-05 12_[+4]_60 chr10:15669687-15669767 1.5e-05 62_[+4]_10 chr6:164361838-164361918 2.6e-05 55_[+4]_17 chr9:6015572-6015652 2.6e-05 42_[+4]_30 chr3:45102764-45102844 3.7e-05 12_[+4]_60 chr6:164758825-164758905 3.7e-05 20_[+4]_52 chr12:107427718-10742779 5.1e-05 1_[+4]_71 chr5:143550163-143550243 5.1e-05 34_[+4]_38 chr6:33257229-33257309 6.2e-05 63_[+4]_9 chr19:12780328-12780408 7.6e-05 3_[+4]_69 chr1:241987423-241987503 9.1e-05 6_[+4]_66 chr1:7887465-7887545 0.00011 33_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCAGAG width=8 seqs=27 chr9:102064175-102064255 ( 19) TGTCAGAG 1 chr11:86648399-86648479 ( 8) TGTCAGAG 1 chr14:103017335-10301741 ( 40) TGTCAGAG 1 chr15:57076407-57076487 ( 15) TGTCAGAG 1 chr5:102392981-102393061 ( 38) TGTCAGAG 1 chr16:20956267-20956347 ( 29) TGTCAGAG 1 chr3:101362808-101362888 ( 26) TGTCAGAG 1 chr11:67331227-67331307 ( 35) TGTCAGAG 1 chr5:70694841-70694921 ( 40) TGTCAGAG 1 chr12:96476899-96476979 ( 15) TGTCAGAG 1 chr3:32090169-32090249 ( 13) TGTCAGAG 1 chr14:64830123-64830203 ( 20) TGTCAGAG 1 chr16:12704956-12705036 ( 49) TGTCAGAG 1 chr11:43974597-43974677 ( 15) TGTCAGAG 1 chr7:142411590-142411670 ( 16) TGTCAGAG 1 chr8:29474743-29474823 ( 13) TGTCAGAG 1 chr10:15669687-15669767 ( 63) TGTCAGAG 1 chr6:164361838-164361918 ( 56) TGTCAAAG 1 chr9:6015572-6015652 ( 43) TGTCAAAG 1 chr3:45102764-45102844 ( 13) TATCAGAG 1 chr6:164758825-164758905 ( 21) TATCAGAG 1 chr12:107427718-10742779 ( 2) TGTCACAG 1 chr5:143550163-143550243 ( 35) TGTCACAG 1 chr6:33257229-33257309 ( 64) TGTCAGAA 1 chr19:12780328-12780408 ( 4) TGACAGAG 1 chr1:241987423-241987503 ( 7) TGTGAGAG 1 chr1:7887465-7887545 ( 34) TGTCCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.19896 E= 7.1e-014 -1140 -1140 -1140 216 -154 -1140 171 -1140 -254 -1140 -1140 210 -1140 180 -293 -1140 216 -290 -1140 -1140 -154 -190 159 -1140 221 -1140 -1140 -1140 -254 -1140 176 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 7.1e-014 0.000000 0.000000 0.000000 1.000000 0.074074 0.000000 0.925926 0.000000 0.037037 0.000000 0.000000 0.962963 0.000000 0.962963 0.037037 0.000000 0.962963 0.037037 0.000000 0.000000 0.074074 0.074074 0.851852 0.000000 1.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.962963 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-4 regular expression -------------------------------------------------------------------------------- TGTCAGAG -------------------------------------------------------------------------------- Time 15.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGATGG MEME-5 width = 8 sites = 20 llr = 212 E-value = 7.4e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :aa1a::: pos.-specific C a::1:::: probability G 1::9::aa matrix T :::::a:: bits 2.2 ** ** 2.0 ** ** 1.8 ** **** 1.6 *** **** Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGATGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:36023217-36023297 45 1.40e-05 TACCCACAAG CAAGATGG CGGCAACGGC chr14:93042239-93042319 13 1.40e-05 aacccctatt caagatgg gggtcactct chr5:90587963-90588043 15 1.40e-05 agcccctatt caagatgg agttgctatg chr12:116994326-11699440 24 1.40e-05 agctcctatt caagatgg agttgctctt chr5:73887751-73887831 5 1.40e-05 catt caagatgg agttgctctg chr3:99495971-99496051 43 1.40e-05 agcccctatt caagatgg agttgctctg chr20:49955669-49955749 13 1.40e-05 ggcccctatt caagatgg agtcactctg chr12:131847307-13184738 17 1.40e-05 agtccttgtt caagatgg agtcactctg chr4:74962377-74962457 29 1.40e-05 agcccctatt caagatgg agttgctctg chr16:1344225-1344305 20 1.40e-05 cagccccatt caagatgg agttgctctg chr4:185261057-185261137 2 1.40e-05 t caagatgg agtcactctg chr3:44482945-44483025 40 1.40e-05 gttccctatt caagatgg agtcactctg chr15:60314163-60314243 5 1.40e-05 tact caagatgg tgtcgctcca chr17:47154401-47154481 15 1.40e-05 agcacttatt caagatgg agtcgctctg chr15:45876404-45876484 23 1.40e-05 cagtcctatt caagatgg agttgctctg chr5:95043463-95043543 2 1.40e-05 c caagatgg agtctgtctg chr20:46768423-46768503 57 1.40e-05 agcccctatt caagatgg agttgctctg chr6:164362038-164362118 60 2.46e-05 ccaccaaaac caaaatgg tgacaaaagt chr11:45376890-45376970 67 3.83e-05 CCGCCACACA CAACATGG CGGCTT chr8:109455815-109455895 69 5.26e-05 TAGGTTCTGG GAAGATGG CGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:36023217-36023297 1.4e-05 44_[+5]_28 chr14:93042239-93042319 1.4e-05 12_[+5]_60 chr5:90587963-90588043 1.4e-05 14_[+5]_58 chr12:116994326-11699440 1.4e-05 23_[+5]_49 chr5:73887751-73887831 1.4e-05 4_[+5]_68 chr3:99495971-99496051 1.4e-05 42_[+5]_30 chr20:49955669-49955749 1.4e-05 12_[+5]_60 chr12:131847307-13184738 1.4e-05 16_[+5]_56 chr4:74962377-74962457 1.4e-05 28_[+5]_44 chr16:1344225-1344305 1.4e-05 19_[+5]_53 chr4:185261057-185261137 1.4e-05 1_[+5]_71 chr3:44482945-44483025 1.4e-05 39_[+5]_33 chr15:60314163-60314243 1.4e-05 4_[+5]_68 chr17:47154401-47154481 1.4e-05 14_[+5]_58 chr15:45876404-45876484 1.4e-05 22_[+5]_50 chr5:95043463-95043543 1.4e-05 1_[+5]_71 chr20:46768423-46768503 1.4e-05 56_[+5]_16 chr6:164362038-164362118 2.5e-05 59_[+5]_13 chr11:45376890-45376970 3.8e-05 66_[+5]_6 chr8:109455815-109455895 5.3e-05 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGATGG width=8 seqs=20 chr1:36023217-36023297 ( 45) CAAGATGG 1 chr14:93042239-93042319 ( 13) CAAGATGG 1 chr5:90587963-90588043 ( 15) CAAGATGG 1 chr12:116994326-11699440 ( 24) CAAGATGG 1 chr5:73887751-73887831 ( 5) CAAGATGG 1 chr3:99495971-99496051 ( 43) CAAGATGG 1 chr20:49955669-49955749 ( 13) CAAGATGG 1 chr12:131847307-13184738 ( 17) CAAGATGG 1 chr4:74962377-74962457 ( 29) CAAGATGG 1 chr16:1344225-1344305 ( 20) CAAGATGG 1 chr4:185261057-185261137 ( 2) CAAGATGG 1 chr3:44482945-44483025 ( 40) CAAGATGG 1 chr15:60314163-60314243 ( 5) CAAGATGG 1 chr17:47154401-47154481 ( 15) CAAGATGG 1 chr15:45876404-45876484 ( 23) CAAGATGG 1 chr5:95043463-95043543 ( 2) CAAGATGG 1 chr20:46768423-46768503 ( 57) CAAGATGG 1 chr6:164362038-164362118 ( 60) CAAAATGG 1 chr11:45376890-45376970 ( 67) CAACATGG 1 chr8:109455815-109455895 ( 69) GAAGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.26574 E= 7.4e-012 -1097 178 -250 -1097 221 -1097 -1097 -1097 221 -1097 -1097 -1097 -211 -247 167 -1097 221 -1097 -1097 -1097 -1097 -1097 -1097 216 -1097 -1097 182 -1097 -1097 -1097 182 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 7.4e-012 0.000000 0.950000 0.050000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.050000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-5 regular expression -------------------------------------------------------------------------------- CAAGATGG -------------------------------------------------------------------------------- Time 18.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:8594259-8594339 5.76e-01 80 chr1:17093243-17093323 5.28e-01 80 chr8:126575864-126575944 7.91e-02 48_[+3(9.90e-05)]_24 chr20:18447947-18448027 8.21e-01 80 chr6:167364587-167364667 7.60e-01 80 chr6:33388967-33389047 4.12e-01 80 chr3:193923569-193923649 4.44e-01 80 chr13:53191597-53191677 5.05e-01 80 chr10:135201836-13520191 5.05e-01 80 chr16:19165347-19165427 6.21e-02 80 chr14:96087214-96087294 9.54e-01 80 chr12:101673934-10167401 9.38e-02 80 chr2:131100017-131100097 6.99e-03 26_[+1(2.63e-05)]_46 chr20:40322146-40322226 2.33e-02 48_[+1(6.42e-05)]_24 chr16:3162485-3162565 9.00e-01 80 chr1:203652021-203652101 2.10e-01 80 chr7:35734814-35734894 7.43e-01 80 chr1:78245274-78245354 2.93e-01 80 chr12:4647703-4647783 3.50e-02 80 chr18:73967151-73967231 8.83e-01 80 chr3:137906250-137906330 7.66e-01 80 chr1:142891042-142891122 3.76e-01 80 chr20:42073785-42073865 9.14e-02 80 chr1:241987423-241987503 9.12e-02 6_[+4(9.09e-05)]_66 chr12:38710464-38710544 5.87e-01 80 chr20:46768423-46768503 1.01e-03 56_[+5(1.40e-05)]_7_[+3(5.97e-05)]_\ 1 chr5:43067071-43067151 5.42e-01 80 chr2:118572412-118572492 5.28e-01 80 chr20:48532158-48532238 3.95e-01 80 chr1:154600462-154600542 1.19e-02 80 chr5:95043463-95043543 3.78e-03 1_[+5(1.40e-05)]_71 chr9:6015572-6015652 3.71e-02 42_[+4(2.56e-05)]_30 chrX:119077708-119077788 9.32e-01 80 chr1:16971113-16971193 5.86e-01 80 chr13:41345315-41345395 3.61e-01 80 chr22:19615322-19615402 2.15e-01 46_[+3(7.40e-05)]_26 chr11:43333481-43333561 9.93e-01 80 chr9:131084764-131084844 2.96e-01 80 chr14:69291625-69291705 1.30e-03 80 chr13:41837657-41837737 6.82e-02 64_[+3(5.97e-05)]_8 chr2:130201016-130201096 1.01e-01 80 chr4:107237518-107237598 1.68e-01 80 chr8:107072832-107072912 3.01e-01 80 chr5:143550163-143550243 8.59e-04 34_[+4(5.09e-05)]_38 chr11:43665719-43665799 4.33e-01 80 chr17:63119301-63119381 9.55e-01 80 chrX:108780058-108780138 3.97e-01 80 chr10:15669687-15669767 3.84e-03 62_[+4(1.46e-05)]_10 chr6:28219979-28220059 3.95e-01 80 chr19:8617796-8617876 2.57e-01 80 chr19:51373835-51373915 9.09e-01 80 chr6:5261785-5261865 2.53e-01 80 chr15:74988313-74988393 6.94e-01 80 chr10:114206838-11420691 8.01e-01 80 chr22:22973973-22974053 8.26e-01 80 chr15:66797488-66797568 4.37e-01 80 chr8:29474743-29474823 1.62e-08 12_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_16 chr16:5083882-5083962 1.38e-01 29_[+1(9.42e-05)]_43 chr2:232651061-232651141 8.93e-01 80 chr1:155211036-155211116 6.43e-02 80 chr15:45876404-45876484 7.75e-04 22_[+5(1.40e-05)]_50 chr1:247531129-247531209 7.80e-01 80 chr16:26981066-26981146 6.86e-06 12_[+2(1.31e-05)]_6_[+1(3.73e-05)]_\ 8_[+3(1.46e-05)]_30 chr1:7887465-7887545 8.37e-02 80 chr7:5553421-5553501 4.13e-01 80 chr6:164758825-164758905 2.42e-08 20_[+4(3.67e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_8 chr19:52290281-52290361 5.15e-01 80 chr7:142411590-142411670 7.92e-08 15_[+4(1.46e-05)]_6_[+2(2.60e-05)]_\ 6_[+1(3.73e-05)]_8_[+3(1.46e-05)]_13 chr6:107077443-107077523 3.37e-02 80 chr7:38948729-38948809 4.34e-01 80 chr19:54020437-54020517 7.72e-01 80 chr2:68290096-68290176 9.90e-01 80 chr1:18748642-18748722 2.54e-05 45_[+2(3.62e-05)]_6_[+1(1.45e-05)]_\ 13 chr19:37958369-37958449 1.67e-01 80 chr1:222763341-222763421 1.07e-01 80 chr11:43974597-43974677 1.96e-08 14_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_14 chr14:70826436-70826516 4.59e-01 80 chr11:43902240-43902320 4.58e-01 80 chr6:111303252-111303332 8.19e-02 28_[+3(2.61e-05)]_44 chr5:124060785-124060865 2.96e-01 80 chr8:94886451-94886531 2.59e-01 80 chr19:44555757-44555837 2.60e-01 80 chr6:10147354-10147434 3.52e-01 80 chr7:7680535-7680615 1.50e-01 65_[+1(9.42e-05)]_7 chr4:44680351-44680431 8.05e-01 80 chr2:197664415-197664495 1.36e-01 32_[+3(9.90e-05)]_40 chr11:3531006-3531086 1.38e-01 80 chr11:36310940-36311020 1.11e-02 18_[+1(1.45e-05)]_54 chr5:173314945-173315025 2.08e-01 80 chr19:605213-605293 1.04e-01 80 chr2:68384701-68384781 2.22e-01 80 chr12:96429453-96429533 1.34e-01 80 chr14:61201412-61201492 9.62e-01 80 chr15:90325468-90325548 1.20e-02 65_[+2(1.31e-05)]_7 chr17:47154401-47154481 1.22e-03 14_[+5(1.40e-05)]_7_[+3(5.97e-05)]_\ 43 chr15:60314163-60314243 7.26e-03 4_[+5(1.40e-05)]_68 chr16:12704956-12705036 1.73e-04 48_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 10 chr11:36615952-36616032 4.93e-01 80 chr2:200820337-200820417 9.30e-01 80 chr2:201936580-201936660 2.36e-02 14_[+3(9.90e-05)]_58 chr11:107436359-10743643 1.83e-01 80 chr12:34175330-34175410 3.96e-01 80 chr14:64830123-64830203 1.62e-08 19_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_9 chr12:96252664-96252744 2.55e-01 80 chr3:32090169-32090249 1.78e-08 12_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(2.63e-05)]_8_[+3(1.46e-05)]_16 chr9:134955231-134955311 6.25e-01 80 chr11:28131777-28131857 8.97e-01 80 chr7:97601644-97601724 1.08e-01 42_[+2(8.31e-05)]_30 chr12:2922080-2922160 7.13e-01 80 chr1:70671534-70671614 1.42e-01 80 chr1:208067691-208067771 3.91e-01 80 chr3:88198998-88199078 5.75e-02 11_[+2(2.60e-05)]_61 chr1:53480556-53480636 4.33e-01 80 chr14:103000352-10300043 2.76e-02 7_[+3(5.97e-05)]_65 chr3:128880014-128880094 2.06e-01 80 chr12:96476899-96476979 1.62e-08 14_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_14 chr3:44482945-44483025 1.27e-03 39_[+5(1.40e-05)]_7_[+3(5.97e-05)]_\ 18 chr4:25314590-25314670 9.89e-01 80 chr6:50995175-50995255 9.96e-01 80 chr1:145090170-145090250 1.42e-02 3_[+3(1.46e-05)]_69 chr18:71815687-71815767 3.98e-02 80 chr8:98774872-98774952 3.55e-05 8_[+2(2.60e-05)]_6_[+1(1.45e-05)]_\ 50 chr3:132379039-132379119 5.27e-01 80 chr2:70121012-70121092 9.30e-01 80 chr4:185261057-185261137 7.40e-04 1_[+5(1.40e-05)]_71 chr13:45563595-45563675 4.77e-01 80 chr13:52768558-52768638 7.37e-01 80 chr19:3626805-3626885 5.87e-01 80 chr19:12780328-12780408 8.84e-02 3_[+4(7.60e-05)]_69 chr6:30524175-30524255 3.65e-01 80 chr5:70694841-70694921 9.48e-06 39_[+4(1.46e-05)]_6_[+2(2.60e-05)]_\ 6_[+1(1.45e-05)]_5 chr14:23775963-23776043 9.88e-01 80 chr11:67331227-67331307 8.57e-07 34_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_10 chr16:1344225-1344305 1.62e-03 19_[+5(1.40e-05)]_7_[+3(5.97e-05)]_\ 38 chr6:147770826-147770906 2.58e-01 80 chr18:67872942-67873022 9.73e-01 80 chr16:71496098-71496178 8.98e-01 80 chr6:164362038-164362118 8.84e-05 38_[+3(7.40e-05)]_13_[+5(2.46e-05)]_\ 13 chr6:164361838-164361918 2.68e-04 55_[+4(2.56e-05)]_6_[+2(1.31e-05)]_\ 3 chr17:63119507-63119587 4.29e-01 80 chrX:48455862-48455942 1.72e-03 35_[+1(1.45e-05)]_37 chr5:74062978-74063058 9.67e-02 80 chr5:37379318-37379398 7.22e-01 80 chr16:30621725-30621805 3.45e-01 80 chr8:182394-182474 9.22e-01 80 chr19:9938473-9938553 3.60e-02 80 chr10:121765273-12176535 2.88e-01 80 chr19:44100576-44100656 2.46e-02 80 chr4:135248636-135248716 7.23e-01 80 chr17:46185212-46185292 4.89e-01 80 chr12:106751491-10675157 4.98e-01 80 chr7:20257075-20257155 3.11e-01 80 chr19:9649282-9649362 7.69e-01 80 chr19:56154914-56154994 1.00e+00 80 chr8:109455815-109455895 4.55e-02 68_[+5(5.26e-05)]_4 chr6:167880228-167880308 6.06e-01 80 chr4:74962377-74962457 1.26e-05 7_[+1(2.63e-05)]_13_[+5(1.40e-05)]_\ 7_[+3(2.61e-05)]_29 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chrX:103401445-103401525 3.05e-01 80 chr9:99776081-99776161 8.92e-01 80 chr10:134791415-13479149 5.25e-01 80 chr8:121457465-121457545 6.06e-01 80 chr4:164088091-164088171 9.48e-01 80 chr6:33257229-33257309 1.44e-04 4_[+1(1.45e-05)]_51_[+4(6.20e-05)]_\ 9 chr7:156713317-156713397 1.34e-03 47_[+2(4.96e-05)]_25 chr5:93954327-93954407 4.97e-01 80 chr12:107427718-10742779 3.12e-06 1_[+4(5.09e-05)]_6_[+2(1.31e-05)]_6_\ [+1(3.73e-05)]_43 chr11:86648399-86648479 2.36e-08 7_[+4(1.46e-05)]_6_[+2(1.31e-05)]_6_\ [+1(1.45e-05)]_8_[+3(1.46e-05)]_21 chr5:5586036-5586116 9.98e-02 9_[+2(1.31e-05)]_63 chr22:22523073-22523153 1.82e-01 80 chr17:47785400-47785480 1.97e-01 80 chr1:199901296-199901376 4.58e-01 80 chr3:124449318-124449398 8.61e-01 80 chr2:143688691-143688771 4.21e-01 80 chr2:110970077-110970157 3.26e-01 80 chr21:38939252-38939332 1.52e-01 42_[+5(7.74e-05)]_30 chr19:47987452-47987532 8.83e-01 80 chr12:121454242-12145432 1.02e-02 31_[+1(1.45e-05)]_41 chr1:36023217-36023297 3.69e-02 44_[+5(1.40e-05)]_28 chr1:155188777-155188857 2.06e-02 80 chr12:133562934-13356301 9.96e-01 80 chr13:37574757-37574837 1.09e-01 72_[+1(5.53e-05)] chr3:45102764-45102844 2.42e-08 12_[+4(3.67e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_16 chr11:45376890-45376970 4.59e-02 66_[+5(3.83e-05)]_6 chr9:102064175-102064255 4.87e-09 18_[+4(1.46e-05)]_6_[+2(1.31e-05)]_\ 6_[+1(1.45e-05)]_8_[+3(1.46e-05)]_10 chr5:74063177-74063257 2.06e-01 80 chr1:32110726-32110806 5.81e-02 80 chr19:36119907-36119987 7.91e-01 80 chr9:132913358-132913438 5.74e-01 80 chr14:69658204-69658284 7.42e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************