******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/DEAF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:89974048-89974128 1.0000 80 chr11:695384-695464 1.0000 80 chr16:14013711-14013791 1.0000 80 chr10:64576585-64576665 1.0000 80 chr19:54694586-54694666 1.0000 80 chr2:208394497-208394577 1.0000 80 chr19:54693619-54693699 1.0000 80 chr16:25026802-25026882 1.0000 80 chr19:55896938-55897018 1.0000 80 chr1:97187331-97187411 1.0000 80 chr11:63606252-63606332 1.0000 80 chr16:56228395-56228475 1.0000 80 chr11:62369397-62369477 1.0000 80 chr1:155829172-155829252 1.0000 80 chr20:45318437-45318517 1.0000 80 chr19:56165792-56165872 1.0000 80 chrX:70338392-70338472 1.0000 80 chr20:45318236-45318316 1.0000 80 chr5:14143323-14143403 1.0000 80 chr22:36425100-36425180 1.0000 80 chr3:13936957-13937037 1.0000 80 chr19:18335385-18335465 1.0000 80 chr13:107220505-10722058 1.0000 80 chr11:1410920-1411000 1.0000 80 chr12:49760542-49760622 1.0000 80 chrX:117629573-117629653 1.0000 80 chr19:7099128-7099208 1.0000 80 chr12:122018131-12201821 1.0000 80 chr2:19562880-19562960 1.0000 80 chr1:41328277-41328357 1.0000 80 chr8:30670359-30670439 1.0000 80 chr22:51021278-51021358 1.0000 80 chr16:56228594-56228674 1.0000 80 chr4:699610-699690 1.0000 80 chr11:63604845-63604925 1.0000 80 chr1:2159253-2159333 1.0000 80 chr19:45348934-45349014 1.0000 80 chr11:8054845-8054925 1.0000 80 chr9:131314602-131314682 1.0000 80 chr22:37595520-37595600 1.0000 80 chr12:52345120-52345200 1.0000 80 chr4:128703296-128703376 1.0000 80 chr16:3930835-3930915 1.0000 80 chr11:63639608-63639688 1.0000 80 chr15:69755176-69755256 1.0000 80 chr16:28936523-28936603 1.0000 80 chrX:80377293-80377373 1.0000 80 chr11:63606455-63606535 1.0000 80 chr2:17699760-17699840 1.0000 80 chr8:28558976-28559056 1.0000 80 chr7:11013323-11013403 1.0000 80 chr11:695586-695666 1.0000 80 chr4:6271241-6271321 1.0000 80 chr19:18263492-18263572 1.0000 80 chr16:1660800-1660880 1.0000 80 chr17:45266856-45266936 1.0000 80 chr22:24236276-24236356 1.0000 80 chr19:49385144-49385224 1.0000 80 chr19:49362011-49362091 1.0000 80 chr2:61698185-61698265 1.0000 80 chr19:49310028-49310108 1.0000 80 chr3:13937158-13937238 1.0000 80 chr19:49404485-49404565 1.0000 80 chr14:77843485-77843565 1.0000 80 chr19:56165996-56166076 1.0000 80 chr2:207024179-207024259 1.0000 80 chr13:45151666-45151746 1.0000 80 chr16:22202003-22202083 1.0000 80 chr9:74383506-74383586 1.0000 80 chr14:23564463-23564543 1.0000 80 chr19:49416527-49416607 1.0000 80 chr19:17622277-17622357 1.0000 80 chrX:119384484-119384564 1.0000 80 chr19:55816993-55817073 1.0000 80 chr2:74881314-74881394 1.0000 80 chr7:105516905-105516985 1.0000 80 chr3:49577239-49577319 1.0000 80 chr17:45266648-45266728 1.0000 80 chr13:44716193-44716273 1.0000 80 chr16:14013912-14013992 1.0000 80 chr19:1123181-1123261 1.0000 80 chr2:48009822-48009902 1.0000 80 chr8:77912428-77912508 1.0000 80 chr19:49248620-49248700 1.0000 80 chr16:68482586-68482666 1.0000 80 chr19:49228246-49228326 1.0000 80 chr19:59070359-59070439 1.0000 80 chr4:113445181-113445261 1.0000 80 chr13:44716440-44716520 1.0000 80 chr19:49486872-49486952 1.0000 80 chr19:54480861-54480941 1.0000 80 chr3:119813571-119813651 1.0000 80 chr19:54396434-54396514 1.0000 80 chr19:47616716-47616796 1.0000 80 chr15:67546669-67546749 1.0000 80 chr19:49013941-49014021 1.0000 80 chr19:37329212-37329292 1.0000 80 chrX:16804316-16804396 1.0000 80 chr2:208394698-208394778 1.0000 80 chr19:18335179-18335259 1.0000 80 chr13:45914713-45914793 1.0000 80 chr19:55690504-55690584 1.0000 80 chr1:198126766-198126846 1.0000 80 chrX:70503397-70503477 1.0000 80 chr13:98085539-98085619 1.0000 80 chr19:55831277-55831357 1.0000 80 chr12:110906475-11090655 1.0000 80 chr17:47270169-47270249 1.0000 80 chr4:76650385-76650465 1.0000 80 chr1:63782756-63782836 1.0000 80 chr7:6543398-6543478 1.0000 80 chr19:18263696-18263776 1.0000 80 chr18:23671094-23671174 1.0000 80 chr6:27551223-27551303 1.0000 80 chr19:51142563-51142643 1.0000 80 chr1:31885886-31885966 1.0000 80 chr5:175875090-175875170 1.0000 80 chr9:79009272-79009352 1.0000 80 chr19:54682351-54682431 1.0000 80 chr4:113558470-113558550 1.0000 80 chr19:55815801-55815881 1.0000 80 chr7:20257100-20257180 1.0000 80 chr7:26240872-26240952 1.0000 80 chr19:7616349-7616429 1.0000 80 chr7:6413944-6414024 1.0000 80 chr15:79152920-79153000 1.0000 80 chr19:49148188-49148268 1.0000 80 chr18:3448015-3448095 1.0000 80 chrX:18693006-18693086 1.0000 80 chr6:56407664-56407744 1.0000 80 chr19:51893798-51893878 1.0000 80 chr19:49422143-49422223 1.0000 80 chr20:33735182-33735262 1.0000 80 chr2:207024381-207024461 1.0000 80 chr1:21503416-21503496 1.0000 80 chr17:7118407-7118487 1.0000 80 chr19:4328456-4328536 1.0000 80 chr7:63386705-63386785 1.0000 80 chr4:128703496-128703576 1.0000 80 chr19:44555994-44556074 1.0000 80 chr3:184081009-184081089 1.0000 80 chr19:50651536-50651616 1.0000 80 chr19:54411489-54411569 1.0000 80 chr19:41084528-41084608 1.0000 80 chr3:13938209-13938289 1.0000 80 chr20:39946345-39946425 1.0000 80 chr17:8022444-8022524 1.0000 80 chr19:47616514-47616594 1.0000 80 chr4:113558270-113558350 1.0000 80 chr16:31885021-31885101 1.0000 80 chr7:100034240-100034320 1.0000 80 chr2:198318206-198318286 1.0000 80 chr19:49479591-49479671 1.0000 80 chr5:64920469-64920549 1.0000 80 chr3:169489998-169490078 1.0000 80 chr2:86332692-86332772 1.0000 80 chr2:74649217-74649297 1.0000 80 chr13:114428171-11442825 1.0000 80 chr19:19887272-19887352 1.0000 80 chr12:49760743-49760823 1.0000 80 chr22:35653374-35653454 1.0000 80 chr13:31736518-31736598 1.0000 80 chr17:40706773-40706853 1.0000 80 chr22:42466798-42466878 1.0000 80 chr1:21503620-21503700 1.0000 80 chr6:157801094-157801174 1.0000 80 chr11:60681313-60681393 1.0000 80 chr19:3572709-3572789 1.0000 80 chr2:119532220-119532300 1.0000 80 chr19:49250499-49250579 1.0000 80 chr8:28588368-28588448 1.0000 80 chr2:70476139-70476219 1.0000 80 chr2:97534352-97534432 1.0000 80 chr17:38804215-38804295 1.0000 80 chr5:122847746-122847826 1.0000 80 chr10:38383160-38383240 1.0000 80 chr14:21099331-21099411 1.0000 80 chr17:81060515-81060595 1.0000 80 chr1:160068436-160068516 1.0000 80 chr13:41768712-41768792 1.0000 80 chr2:23598480-23598560 1.0000 80 chr19:55709052-55709132 1.0000 80 chr11:60674088-60674168 1.0000 80 chr2:239143011-239143091 1.0000 80 chr16:285400-285480 1.0000 80 chr22:30163074-30163154 1.0000 80 chr7:43622565-43622645 1.0000 80 chr8:33330701-33330781 1.0000 80 chr7:66395430-66395510 1.0000 80 chr11:63607212-63607292 1.0000 80 chr16:25027003-25027083 1.0000 80 chr1:41414721-41414801 1.0000 80 chr12:861521-861601 1.0000 80 chr6:31866313-31866393 1.0000 80 chr6:52860363-52860443 1.0000 80 chrX:65383990-65384070 1.0000 80 chr10:123687612-12368769 1.0000 80 chr6:27559603-27559683 1.0000 80 chr19:55677450-55677530 1.0000 80 chr17:19411466-19411546 1.0000 80 chr19:50163169-50163249 1.0000 80 chr16:75467468-75467548 1.0000 80 chr6:28626015-28626095 1.0000 80 chr5:172484406-172484486 1.0000 80 chr6:10147344-10147424 1.0000 80 chr6:26305645-26305725 1.0000 80 chr20:37419253-37419333 1.0000 80 chr1:151254556-151254636 1.0000 80 chr14:21151447-21151527 1.0000 80 chr3:119813770-119813850 1.0000 80 chr6:27515543-27515623 1.0000 80 chr12:95867656-95867736 1.0000 80 chr19:45988718-45988798 1.0000 80 chr21:15755505-15755585 1.0000 80 chr7:150689949-150690029 1.0000 80 chr16:3207354-3207434 1.0000 80 chr7:148660345-148660425 1.0000 80 chr11:46134670-46134750 1.0000 80 chr6:149067966-149068046 1.0000 80 chr13:107220704-10722078 1.0000 80 chr17:54911017-54911097 1.0000 80 chr11:696553-696633 1.0000 80 chr1:205744616-205744696 1.0000 80 chr17:76778622-76778702 1.0000 80 chr3:42922609-42922689 1.0000 80 chr14:58706627-58706707 1.0000 80 chr1:171750406-171750486 1.0000 80 chr19:2456102-2456182 1.0000 80 chr10:28821897-28821977 1.0000 80 chr17:37310768-37310848 1.0000 80 chr6:27759103-27759183 1.0000 80 chr4:48782421-48782501 1.0000 80 chr19:12947204-12947284 1.0000 80 chr10:105881516-10588159 1.0000 80 chr9:2241986-2242066 1.0000 80 chr19:3093960-3094040 1.0000 80 chr2:238875510-238875590 1.0000 80 chr18:71815685-71815765 1.0000 80 chr19:49224346-49224426 1.0000 80 chr16:25118471-25118551 1.0000 80 chr8:144152504-144152584 1.0000 80 chr16:30908458-30908538 1.0000 80 chr11:66115620-66115700 1.0000 80 chr1:224544440-224544520 1.0000 80 chr19:54692254-54692334 1.0000 80 chr1:222638319-222638399 1.0000 80 chr8:145159210-145159290 1.0000 80 chr5:131515960-131516040 1.0000 80 chrX:47093035-47093115 1.0000 80 chr6:27302792-27302872 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_DEAF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/DEAF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.199 C 0.296 G 0.305 T 0.201 Background letter frequencies (from file dataset with add-one prior applied): A 0.199 C 0.296 G 0.305 T 0.201 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TBCTGGGA MEME-1 width = 8 sites = 53 llr = 440 E-value = 1.9e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2::12a pos.-specific C :27::::: probability G :4::a98: matrix T a41a:::: bits 2.3 * * 2.1 * * * 1.9 * * * 1.6 * ** * Relative 1.4 * *** * Entropy 1.2 * ***** (12.0 bits) 0.9 * ***** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGGGA consensus T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:150689949-150690029 66 1.36e-05 CCCACCTGCA TTCTGGGA ACTGTAG chr19:55677450-55677530 61 1.36e-05 CCTCTGAGTA TTCTGGGA TTCGCAGTCC chr6:31866313-31866393 64 1.36e-05 TTCCAGAGCT TTCTGGGA ATTGTAGTT chr22:30163074-30163154 38 1.36e-05 GCGCGAGGGC TTCTGGGA GTTGTAGTTT chr13:31736518-31736598 69 1.36e-05 CGGCTTTGTC TTCTGGGA CTCG chr2:86332692-86332772 60 1.36e-05 GCAAAAGCGC TTCTGGGA ATCGTAGTTT chr19:44555994-44556074 69 1.36e-05 AACCGTTGAA TTCTGGGA ACGA chr19:49486872-49486952 46 1.36e-05 GTCAAAGGCC TTCTGGGA GTTGTAGTTC chr19:49228246-49228326 71 1.36e-05 CACCAAAGTC TTCTGGGA GT chr16:68482586-68482666 25 1.36e-05 TCGCACAGCC TTCTGGGA CTTATAGTTC chr19:49248620-49248700 56 1.36e-05 GCCCGTTGCC TTCTGGGA GTTGTAGTTT chr19:49310028-49310108 66 1.36e-05 CCCTGGAGGA TTCTGGGA CATGCAG chr2:19562880-19562960 28 1.36e-05 GGTTTCGAGA TTCTGGGA CGCAATCCTA chr19:50163169-50163249 54 3.42e-05 GGCCTAGGGC TGCTGGGA GTTGTAGTTT chr2:23598480-23598560 26 3.42e-05 actgccagga TGCTGGGA GATGTAGTct chr8:28588368-28588448 6 3.42e-05 AAGCA TGCTGGGA ATTCCATAGC chr19:49479591-49479671 66 3.42e-05 CAGCAGGGGC TGCTGGGA GTTGTAG chr7:63386705-63386785 59 3.42e-05 TCGCCAGGCA TGCTGGGA GAAGTAGTTT chr19:49422143-49422223 67 3.42e-05 CCCAAAGGAC TGCTGGGA GTTGAA chr19:7616349-7616429 61 3.42e-05 TCCTGAGGGA TGCTGGGA AATGGAGTTC chr19:51142563-51142643 62 3.42e-05 CTGCAGGATC TGCTGGGA GTTGAAGTCC chr19:55831277-55831357 68 3.42e-05 CCACGGGGCA TGCTGGGA GTTGT chr19:55690504-55690584 69 3.42e-05 CCGCGAGTCA TGCTGGGA GTTG chrX:16804316-16804396 23 3.42e-05 CCGCACGCCC TGCTGGGA CTTGTAGTCC chr19:49416527-49416607 68 3.42e-05 CCCCAGGGTC TGCTGGGA GTTGT chr1:205744616-205744696 58 5.42e-05 CCGCGAAGcc tcctggga aatgtagtat chr19:55815801-55815881 68 5.42e-05 TCCTAGAGCC TCCTGGGA GTTGT chr17:7118407-7118487 73 6.33e-05 CCTCGGGGCC TTATGGGA chr19:55709052-55709132 67 8.60e-05 CCCCATGGTG TGATGGGA TTTGTA chr19:54411489-54411569 64 8.60e-05 CCGCCAGGGC TGATGGGA AATGTAGTC chr19:54396434-54396514 60 8.60e-05 CCCCAGGGTC TGATGGGA ATTATAGTTC chr19:49362011-49362091 64 8.60e-05 CCCTGAGGCC TGATGGGA AACGTAGTC chr19:49385144-49385224 63 8.60e-05 GCTCAAGTGA TGATGGGA GATGTAGTTC chr11:63639608-63639688 70 8.60e-05 TTGGGCTGTG TTCTGGAA AGG chr16:75467468-75467548 25 1.09e-04 ACGCGGTGCA TGCTGGAA CTTGTAGTCT chr19:54480861-54480941 68 1.45e-04 TCACGGGGTC TCATGGGA AATGT chr19:55816993-55817073 66 1.45e-04 CTCCTGGGGC TCATGGGA TTTGTAG chr1:2159253-2159333 54 1.71e-04 GAGCGCGCGT TCCTGGAA GAGCCCGGCT chr19:45988718-45988798 63 1.91e-04 GAGCAGAGCC TCTTGGGA AATGTAGTCC chr8:33330701-33330781 72 1.91e-04 GTTCACAAGC TCTTGGGA C chr19:49404485-49404565 67 1.91e-04 TTCATGGTGC TCTTGGGA GTTGTA chr19:49224346-49224426 73 2.00e-04 CCCCTGGGCA TGATGGAA chrX:65383990-65384070 5 2.13e-04 TTCC TCCTGAGA TCCTAACCAG chr19:41084528-41084608 13 2.13e-04 GTGCTGTGCG TCCTGAGA TACAGTGGGA chr4:113445181-113445261 66 2.13e-04 CGAGGGGGTA TCCTGAGA GCACCGC chr10:38383160-38383240 53 2.39e-04 GCGCGAGGGC TTGTGGGA AATGAAGCGT chr19:49013941-49014021 59 2.39e-04 GCCCAAGGCA TTGTGGGA GTTGTAGTTT chr1:160068436-160068516 20 2.54e-04 CCCTCGGCAG TTCTGAAA CCATTCTcgc chr7:100034240-100034320 17 2.93e-04 CAAGCCGAAG TGTTGGAA GCACTCACAG chr19:56165996-56166076 40 2.93e-04 CGGATTGAAT TGTTGGAA GAACCCGAAC chr7:26240872-26240952 70 3.08e-04 GAGAGTTCGC TGCTGAAA GTG chr19:49250499-49250579 59 3.28e-04 CCTCATAGCT TTCCGGGA AATGTAGTTC chr20:45318437-45318517 44 3.28e-04 CAGAAGTCTC TTCCGGGA CAGCTGTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:150689949-150690029 1.4e-05 65_[+1]_7 chr19:55677450-55677530 1.4e-05 60_[+1]_12 chr6:31866313-31866393 1.4e-05 63_[+1]_9 chr22:30163074-30163154 1.4e-05 37_[+1]_35 chr13:31736518-31736598 1.4e-05 68_[+1]_4 chr2:86332692-86332772 1.4e-05 59_[+1]_13 chr19:44555994-44556074 1.4e-05 68_[+1]_4 chr19:49486872-49486952 1.4e-05 45_[+1]_27 chr19:49228246-49228326 1.4e-05 70_[+1]_2 chr16:68482586-68482666 1.4e-05 24_[+1]_48 chr19:49248620-49248700 1.4e-05 55_[+1]_17 chr19:49310028-49310108 1.4e-05 65_[+1]_7 chr2:19562880-19562960 1.4e-05 27_[+1]_45 chr19:50163169-50163249 3.4e-05 53_[+1]_19 chr2:23598480-23598560 3.4e-05 25_[+1]_47 chr8:28588368-28588448 3.4e-05 5_[+1]_67 chr19:49479591-49479671 3.4e-05 65_[+1]_7 chr7:63386705-63386785 3.4e-05 58_[+1]_14 chr19:49422143-49422223 3.4e-05 66_[+1]_6 chr19:7616349-7616429 3.4e-05 60_[+1]_12 chr19:51142563-51142643 3.4e-05 61_[+1]_11 chr19:55831277-55831357 3.4e-05 67_[+1]_5 chr19:55690504-55690584 3.4e-05 68_[+1]_4 chrX:16804316-16804396 3.4e-05 22_[+1]_50 chr19:49416527-49416607 3.4e-05 67_[+1]_5 chr1:205744616-205744696 5.4e-05 57_[+1]_15 chr19:55815801-55815881 5.4e-05 67_[+1]_5 chr17:7118407-7118487 6.3e-05 72_[+1] chr19:55709052-55709132 8.6e-05 66_[+1]_6 chr19:54411489-54411569 8.6e-05 63_[+1]_9 chr19:54396434-54396514 8.6e-05 59_[+1]_13 chr19:49362011-49362091 8.6e-05 63_[+1]_9 chr19:49385144-49385224 8.6e-05 62_[+1]_10 chr11:63639608-63639688 8.6e-05 69_[+1]_3 chr16:75467468-75467548 0.00011 24_[+1]_48 chr19:54480861-54480941 0.00014 67_[+1]_5 chr19:55816993-55817073 0.00014 65_[+1]_7 chr1:2159253-2159333 0.00017 53_[+1]_19 chr19:45988718-45988798 0.00019 62_[+1]_10 chr8:33330701-33330781 0.00019 71_[+1]_1 chr19:49404485-49404565 0.00019 66_[+1]_6 chr19:49224346-49224426 0.0002 72_[+1] chrX:65383990-65384070 0.00021 4_[+1]_68 chr19:41084528-41084608 0.00021 12_[+1]_60 chr4:113445181-113445261 0.00021 65_[+1]_7 chr10:38383160-38383240 0.00024 52_[+1]_20 chr19:49013941-49014021 0.00024 58_[+1]_14 chr1:160068436-160068516 0.00025 19_[+1]_53 chr7:100034240-100034320 0.00029 16_[+1]_56 chr19:56165996-56166076 0.00029 39_[+1]_33 chr7:26240872-26240952 0.00031 69_[+1]_3 chr19:49250499-49250579 0.00033 58_[+1]_14 chr20:45318437-45318517 0.00033 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBCTGGGA width=8 seqs=53 chr7:150689949-150690029 ( 66) TTCTGGGA 1 chr19:55677450-55677530 ( 61) TTCTGGGA 1 chr6:31866313-31866393 ( 64) TTCTGGGA 1 chr22:30163074-30163154 ( 38) TTCTGGGA 1 chr13:31736518-31736598 ( 69) TTCTGGGA 1 chr2:86332692-86332772 ( 60) TTCTGGGA 1 chr19:44555994-44556074 ( 69) TTCTGGGA 1 chr19:49486872-49486952 ( 46) TTCTGGGA 1 chr19:49228246-49228326 ( 71) TTCTGGGA 1 chr16:68482586-68482666 ( 25) TTCTGGGA 1 chr19:49248620-49248700 ( 56) TTCTGGGA 1 chr19:49310028-49310108 ( 66) TTCTGGGA 1 chr2:19562880-19562960 ( 28) TTCTGGGA 1 chr19:50163169-50163249 ( 54) TGCTGGGA 1 chr2:23598480-23598560 ( 26) TGCTGGGA 1 chr8:28588368-28588448 ( 6) TGCTGGGA 1 chr19:49479591-49479671 ( 66) TGCTGGGA 1 chr7:63386705-63386785 ( 59) TGCTGGGA 1 chr19:49422143-49422223 ( 67) TGCTGGGA 1 chr19:7616349-7616429 ( 61) TGCTGGGA 1 chr19:51142563-51142643 ( 62) TGCTGGGA 1 chr19:55831277-55831357 ( 68) TGCTGGGA 1 chr19:55690504-55690584 ( 69) TGCTGGGA 1 chrX:16804316-16804396 ( 23) TGCTGGGA 1 chr19:49416527-49416607 ( 68) TGCTGGGA 1 chr1:205744616-205744696 ( 58) TCCTGGGA 1 chr19:55815801-55815881 ( 68) TCCTGGGA 1 chr17:7118407-7118487 ( 73) TTATGGGA 1 chr19:55709052-55709132 ( 67) TGATGGGA 1 chr19:54411489-54411569 ( 64) TGATGGGA 1 chr19:54396434-54396514 ( 60) TGATGGGA 1 chr19:49362011-49362091 ( 64) TGATGGGA 1 chr19:49385144-49385224 ( 63) TGATGGGA 1 chr11:63639608-63639688 ( 70) TTCTGGAA 1 chr16:75467468-75467548 ( 25) TGCTGGAA 1 chr19:54480861-54480941 ( 68) TCATGGGA 1 chr19:55816993-55817073 ( 66) TCATGGGA 1 chr1:2159253-2159333 ( 54) TCCTGGAA 1 chr19:45988718-45988798 ( 63) TCTTGGGA 1 chr8:33330701-33330781 ( 72) TCTTGGGA 1 chr19:49404485-49404565 ( 67) TCTTGGGA 1 chr19:49224346-49224426 ( 73) TGATGGAA 1 chrX:65383990-65384070 ( 5) TCCTGAGA 1 chr19:41084528-41084608 ( 13) TCCTGAGA 1 chr4:113445181-113445261 ( 66) TCCTGAGA 1 chr10:38383160-38383240 ( 53) TTGTGGGA 1 chr19:49013941-49014021 ( 59) TTGTGGGA 1 chr1:160068436-160068516 ( 20) TTCTGAAA 1 chr7:100034240-100034320 ( 17) TGTTGGAA 1 chr19:56165996-56166076 ( 40) TGTTGGAA 1 chr7:26240872-26240952 ( 70) TGCTGAAA 1 chr19:49250499-49250579 ( 59) TTCCGGGA 1 chr20:45318437-45318517 ( 44) TTCCGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.97483 E= 1.9e-019 -1237 -1237 -1237 232 -1237 -51 44 91 -23 124 -301 -109 -1237 -297 -1237 226 -1237 -1237 171 -1237 -107 -1237 157 -1237 -40 -1237 148 -1237 233 -1237 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.9e-019 0.000000 0.000000 0.000000 1.000000 0.000000 0.207547 0.415094 0.377358 0.169811 0.698113 0.037736 0.094340 0.000000 0.037736 0.000000 0.962264 0.000000 0.000000 1.000000 0.000000 0.094340 0.000000 0.905660 0.000000 0.150943 0.000000 0.849057 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-1 regular expression -------------------------------------------------------------------------------- T[GTC]CTGGGA -------------------------------------------------------------------------------- Time 4.98 secs. ******************************************************************************** ******************************************************************************** MOTIF WTGTAGTY MEME-2 width = 8 sites = 27 llr = 255 E-value = 4.6e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:1:a::: pos.-specific C :::::::4 probability G 1:9::a:: matrix T 5a:a::a6 bits 2.3 * * 2.1 * ** * 1.9 * ** * 1.6 * **** Relative 1.4 ****** Entropy 1.2 ****** (13.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGTAGTT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:50163169-50163249 63 6.07e-06 CTGCTGGGAG TTGTAGTT TTacacacac chr6:31866313-31866393 73 6.07e-06 TTTCTGGGAA TTGTAGTT chr22:30163074-30163154 47 6.07e-06 CTTCTGGGAG TTGTAGTT TGACATATTC chr6:157801094-157801174 17 6.07e-06 ATGCAGGGAC TTGTAGTT TCTAAGGCCC chr19:49148188-49148268 71 6.07e-06 CCCGTGGGAG TTGTAGTT CT chr19:49013941-49014021 68 6.07e-06 ATTGTGGGAG TTGTAGTT TGGGG chr19:49486872-49486952 55 6.07e-06 CTTCTGGGAG TTGTAGTT CTCACCTTAT chr19:49248620-49248700 65 6.07e-06 CTTCTGGGAG TTGTAGTT TTATTACA chr19:49250499-49250579 68 1.21e-05 TTTCCGGGAA ATGTAGTT CAGTG chr19:49385144-49385224 72 1.21e-05 ATGATGGGAG ATGTAGTT C chr16:75467468-75467548 34 2.10e-05 ATGCTGGAAC TTGTAGTC TTCGGCGCTG chrX:16804316-16804396 32 2.10e-05 CTGCTGGGAC TTGTAGTC CACTCCCGAG chr21:15755505-15755585 25 2.99e-05 CCCCTGGGAA ATGTAGTC CGCTTGCTCT chr19:45988718-45988798 72 2.99e-05 CTCTTGGGAA ATGTAGTC C chr2:23598480-23598560 65 2.99e-05 acgctgggaa atgtagtc aagctcag chr10:38383160-38383240 16 2.99e-05 CTTGTGGGAA ATGTAGTC TGCACTTTCT chr19:54411489-54411569 73 2.99e-05 CTGATGGGAA ATGTAGTC chr19:7616349-7616429 8 2.99e-05 CTGGGAG ATGTAGTC CGGCGTCCAG chr19:41084528-41084608 32 3.91e-05 ACAGTGGGAG GTGTAGTT CCCTATCAGA chr2:208394698-208394778 63 3.91e-05 CGCGGCGGAG GTGTAGTT TGACGCGGTG chr19:54396434-54396514 69 4.31e-05 CTGATGGGAA TTATAGTT CCTA chr16:68482586-68482666 34 4.31e-05 CTTCTGGGAC TTATAGTT CTTTAAGGAC chr13:31736518-31736598 27 6.06e-05 ATGCTGGGAT GTGTAGTC CTGGCCGCAG chr19:44555994-44556074 9 6.06e-05 TACGGGAA GTGTAGTC CACTGGCTCG chr1:205744616-205744696 67 7.84e-05 ctcctgggaa atgtagta tattcg chr7:63386705-63386785 68 1.08e-04 ATGCTGGGAG AAGTAGTT TCTTC chr19:51142563-51142643 71 1.32e-04 CTGCTGGGAG TTGAAGTC CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:50163169-50163249 6.1e-06 62_[+2]_10 chr6:31866313-31866393 6.1e-06 72_[+2] chr22:30163074-30163154 6.1e-06 46_[+2]_26 chr6:157801094-157801174 6.1e-06 16_[+2]_56 chr19:49148188-49148268 6.1e-06 70_[+2]_2 chr19:49013941-49014021 6.1e-06 67_[+2]_5 chr19:49486872-49486952 6.1e-06 54_[+2]_18 chr19:49248620-49248700 6.1e-06 64_[+2]_8 chr19:49250499-49250579 1.2e-05 67_[+2]_5 chr19:49385144-49385224 1.2e-05 71_[+2]_1 chr16:75467468-75467548 2.1e-05 33_[+2]_39 chrX:16804316-16804396 2.1e-05 31_[+2]_41 chr21:15755505-15755585 3e-05 24_[+2]_48 chr19:45988718-45988798 3e-05 71_[+2]_1 chr2:23598480-23598560 3e-05 64_[+2]_8 chr10:38383160-38383240 3e-05 15_[+2]_57 chr19:54411489-54411569 3e-05 72_[+2] chr19:7616349-7616429 3e-05 7_[+2]_65 chr19:41084528-41084608 3.9e-05 31_[+2]_41 chr2:208394698-208394778 3.9e-05 62_[+2]_10 chr19:54396434-54396514 4.3e-05 68_[+2]_4 chr16:68482586-68482666 4.3e-05 33_[+2]_39 chr13:31736518-31736598 6.1e-05 26_[+2]_46 chr19:44555994-44556074 6.1e-05 8_[+2]_64 chr1:205744616-205744696 7.8e-05 66_[+2]_6 chr7:63386705-63386785 0.00011 67_[+2]_5 chr19:51142563-51142643 0.00013 70_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTGTAGTY width=8 seqs=27 chr19:50163169-50163249 ( 63) TTGTAGTT 1 chr6:31866313-31866393 ( 73) TTGTAGTT 1 chr22:30163074-30163154 ( 47) TTGTAGTT 1 chr6:157801094-157801174 ( 17) TTGTAGTT 1 chr19:49148188-49148268 ( 71) TTGTAGTT 1 chr19:49013941-49014021 ( 68) TTGTAGTT 1 chr19:49486872-49486952 ( 55) TTGTAGTT 1 chr19:49248620-49248700 ( 65) TTGTAGTT 1 chr19:49250499-49250579 ( 68) ATGTAGTT 1 chr19:49385144-49385224 ( 72) ATGTAGTT 1 chr16:75467468-75467548 ( 34) TTGTAGTC 1 chrX:16804316-16804396 ( 32) TTGTAGTC 1 chr21:15755505-15755585 ( 25) ATGTAGTC 1 chr19:45988718-45988798 ( 72) ATGTAGTC 1 chr2:23598480-23598560 ( 65) ATGTAGTC 1 chr10:38383160-38383240 ( 16) ATGTAGTC 1 chr19:54411489-54411569 ( 73) ATGTAGTC 1 chr19:7616349-7616429 ( 8) ATGTAGTC 1 chr19:41084528-41084608 ( 32) GTGTAGTT 1 chr2:208394698-208394778 ( 63) GTGTAGTT 1 chr19:54396434-54396514 ( 69) TTATAGTT 1 chr16:68482586-68482666 ( 34) TTATAGTT 1 chr13:31736518-31736598 ( 27) GTGTAGTC 1 chr19:44555994-44556074 ( 9) GTGTAGTC 1 chr1:205744616-205744696 ( 67) ATGTAGTA 1 chr7:63386705-63386785 ( 68) AAGTAGTT 1 chr19:51142563-51142643 ( 71) TTGAAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 4.6e-010 90 -1140 -104 126 -242 -1140 -1140 226 -142 -1140 160 -1140 -242 -1140 -1140 226 233 -1140 -1140 -1140 -1140 -1140 171 -1140 -1140 -1140 -1140 232 -242 46 -1140 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.6e-010 0.370370 0.000000 0.148148 0.481481 0.037037 0.000000 0.000000 0.962963 0.074074 0.000000 0.925926 0.000000 0.037037 0.000000 0.000000 0.962963 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.037037 0.407407 0.000000 0.555556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTGTAGTY MEME-2 regular expression -------------------------------------------------------------------------------- [TA]TGTAGT[TC] -------------------------------------------------------------------------------- Time 8.71 secs. ******************************************************************************** ******************************************************************************** MOTIF AAYTCCCA MEME-3 width = 8 sites = 23 llr = 222 E-value = 6.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a8:::::a pos.-specific C ::5:aa9: probability G ::2:::1: matrix T :23a:::: bits 2.3 * * * 2.1 * * * 1.9 * *** * 1.6 ** *** * Relative 1.4 ** ***** Entropy 1.2 ** ***** (14.0 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACTCCCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:224544440-224544520 3 8.26e-06 AC AATTCCCA GCATGCGTCA chr12:49760743-49760823 64 8.26e-06 TTTCCCCGGT AATTCCCA GTCTCCGGT chr19:54682351-54682431 16 8.26e-06 aacaaactac aattccca tgAGCCTCCG chr19:49416527-49416607 6 8.26e-06 ACTAC AATTCCCA GGGGCCCTTG chr19:49385144-49385224 2 8.26e-06 C AATTCCCA ATAGGCTTTG chr12:861521-861601 7 2.04e-05 AACTAC AACTCCCA CGAGGCATTA chr19:19887272-19887352 50 2.04e-05 AAGAGACTAC AACTCCCA GCATACCAGG chr19:49479591-49479671 8 2.04e-05 GAACTCT AACTCCCA GAAGCCTCTG chr17:7118407-7118487 11 2.04e-05 GATGAACCAC AACTCCCA ACAGCGCCAT chr19:49422143-49422223 7 2.04e-05 AACTAC AACTCCCA TCAGCCCCTG chr19:49148188-49148268 1 2.04e-05 . AACTCCCA GCAGGCCCCA chr19:55690504-55690584 9 2.04e-05 AGAACTCC AACTCCCA TGAGGCCTTT chr19:54480861-54480941 8 2.04e-05 AGACTAC AACTCCCA TGATCCACTG chr19:49228246-49228326 11 2.04e-05 ATTGGACTAC AACTCCCA GGAAGCTTCA chr19:49310028-49310108 5 2.04e-05 CTAC AACTCCCA TGAAGCCCTG chr19:45988718-45988798 2 3.29e-05 C AAGTCCCA GCAGGCCCCG chr19:55831277-55831357 6 3.29e-05 AATAC AAGTCCCA GGAGGGCCGG chr19:55816993-55817073 7 3.29e-05 AACTAC AAGTCCCA GCAGCCCCTG chr6:10147344-10147424 5 4.13e-05 CTCC ATTTCCCA GGAagcactg chr19:50651536-50651616 12 4.13e-05 GCTGGACTAC ATTTCCCA GAAACCATTG chr2:239143011-239143091 16 5.36e-05 TCGGAACTAC ATCTCCCA GGAGGCCCCG chr22:42466798-42466878 19 1.00e-04 GTAACCTGAT AAGTCCGA AGCGTTCCAG chr19:18263696-18263776 25 1.09e-04 GTGTTCGGCC ATTTCCGA AAGCGCTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:224544440-224544520 8.3e-06 2_[+3]_70 chr12:49760743-49760823 8.3e-06 63_[+3]_9 chr19:54682351-54682431 8.3e-06 15_[+3]_57 chr19:49416527-49416607 8.3e-06 5_[+3]_67 chr19:49385144-49385224 8.3e-06 1_[+3]_71 chr12:861521-861601 2e-05 6_[+3]_66 chr19:19887272-19887352 2e-05 49_[+3]_23 chr19:49479591-49479671 2e-05 7_[+3]_65 chr17:7118407-7118487 2e-05 10_[+3]_62 chr19:49422143-49422223 2e-05 6_[+3]_66 chr19:49148188-49148268 2e-05 [+3]_72 chr19:55690504-55690584 2e-05 8_[+3]_64 chr19:54480861-54480941 2e-05 7_[+3]_65 chr19:49228246-49228326 2e-05 10_[+3]_62 chr19:49310028-49310108 2e-05 4_[+3]_68 chr19:45988718-45988798 3.3e-05 1_[+3]_71 chr19:55831277-55831357 3.3e-05 5_[+3]_67 chr19:55816993-55817073 3.3e-05 6_[+3]_66 chr6:10147344-10147424 4.1e-05 4_[+3]_68 chr19:50651536-50651616 4.1e-05 11_[+3]_61 chr2:239143011-239143091 5.4e-05 15_[+3]_57 chr22:42466798-42466878 0.0001 18_[+3]_54 chr19:18263696-18263776 0.00011 24_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAYTCCCA width=8 seqs=23 chr1:224544440-224544520 ( 3) AATTCCCA 1 chr12:49760743-49760823 ( 64) AATTCCCA 1 chr19:54682351-54682431 ( 16) AATTCCCA 1 chr19:49416527-49416607 ( 6) AATTCCCA 1 chr19:49385144-49385224 ( 2) AATTCCCA 1 chr12:861521-861601 ( 7) AACTCCCA 1 chr19:19887272-19887352 ( 50) AACTCCCA 1 chr19:49479591-49479671 ( 8) AACTCCCA 1 chr17:7118407-7118487 ( 11) AACTCCCA 1 chr19:49422143-49422223 ( 7) AACTCCCA 1 chr19:49148188-49148268 ( 1) AACTCCCA 1 chr19:55690504-55690584 ( 9) AACTCCCA 1 chr19:54480861-54480941 ( 8) AACTCCCA 1 chr19:49228246-49228326 ( 11) AACTCCCA 1 chr19:49310028-49310108 ( 5) AACTCCCA 1 chr19:45988718-45988798 ( 2) AAGTCCCA 1 chr19:55831277-55831357 ( 6) AAGTCCCA 1 chr19:55816993-55817073 ( 7) AAGTCCCA 1 chr6:10147344-10147424 ( 5) ATTTCCCA 1 chr19:50651536-50651616 ( 12) ATTTCCCA 1 chr2:239143011-239143091 ( 16) ATCTCCCA 1 chr22:42466798-42466878 ( 19) AAGTCCGA 1 chr19:18263696-18263776 ( 25) ATTTCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.349 E= 6.9e-007 233 -1117 -1117 -1117 205 -1117 -1117 -21 -1117 69 -81 79 -1117 -1117 -1117 232 -1117 176 -1117 -1117 -1117 176 -1117 -1117 -1117 163 -181 -1117 233 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.9e-007 1.000000 0.000000 0.000000 0.000000 0.826087 0.000000 0.000000 0.173913 0.000000 0.478261 0.173913 0.347826 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.913043 0.086957 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYTCCCA MEME-3 regular expression -------------------------------------------------------------------------------- AA[CT]TCCCA -------------------------------------------------------------------------------- Time 12.43 secs. ******************************************************************************** ******************************************************************************** MOTIF AAARAAAC MEME-4 width = 8 sites = 19 llr = 177 E-value = 6.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a8a58a82 pos.-specific C :::12:28 probability G :2:4::1: matrix T :::::::: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 *** ** Relative 1.4 *** *** Entropy 1.2 *** **** (13.4 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:131515960-131516040 26 3.66e-06 AGAGGAAAAA AAAAAAAC TGTCCGAAGT chr19:49224346-49224426 2 3.66e-06 G AAAAAAAC TACAAACCCC chr11:696553-696633 50 3.66e-06 cctctataaa aaaaaaac tgtaaacatc chr19:49416527-49416607 28 3.66e-06 CCCTTGAGGC AAAAAAAC TCCCTGTTAC chr13:41768712-41768792 62 9.26e-06 GGACAGAGGG AAAGAAAC CGCTTTGCAT chr19:45348934-45349014 7 9.26e-06 atccag aaagaaaC GAGTGCAGCG chr19:47616716-47616796 50 1.55e-05 GAAACAGCCG AAAGAAAA GCAGCCAGGG chr2:19562880-19562960 45 1.55e-05 ACGCAATCCT AAAGAAAA CGTGCCCCCT chr1:222638319-222638399 10 2.64e-05 GAATTCCTG AAAACAAC GCCTCACGTG chr19:49385144-49385224 45 3.20e-05 TGCCCTGCCT AGAAAAAC GCTCAAGTGA chr20:45318437-45318517 4 3.20e-05 TCG AGAAAAAC GTCGGACGCG chrX:65383990-65384070 49 4.03e-05 GGATATGGGT AAAGAACC ATCCCGGGTT chr17:47270169-47270249 36 4.03e-05 GCAGCTTCCG AAAGAACC CGAAGGATCA chrX:119384484-119384564 30 4.03e-05 CCCCTTGCGG AAAGAACC GAAGGCAGAG chr19:54682351-54682431 5 5.41e-05 ggct aaacaaac tacaattccc chr16:56228594-56228674 58 5.41e-05 TGCATCCGCC AAAGCAAC TGCTTTTCCT chr19:55896938-55897018 8 7.00e-05 cattcat aaaacaaa tgtttgttga chr10:64576585-64576665 72 7.38e-05 GAGGCAGCGA AGAAAAAA A chr6:26305645-26305725 43 7.94e-05 GGAAACCTTT AAAAAAGC CCAGTTAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:131515960-131516040 3.7e-06 25_[+4]_47 chr19:49224346-49224426 3.7e-06 1_[+4]_71 chr11:696553-696633 3.7e-06 49_[+4]_23 chr19:49416527-49416607 3.7e-06 27_[+4]_45 chr13:41768712-41768792 9.3e-06 61_[+4]_11 chr19:45348934-45349014 9.3e-06 6_[+4]_66 chr19:47616716-47616796 1.5e-05 49_[+4]_23 chr2:19562880-19562960 1.5e-05 44_[+4]_28 chr1:222638319-222638399 2.6e-05 9_[+4]_63 chr19:49385144-49385224 3.2e-05 44_[+4]_28 chr20:45318437-45318517 3.2e-05 3_[+4]_69 chrX:65383990-65384070 4e-05 48_[+4]_24 chr17:47270169-47270249 4e-05 35_[+4]_37 chrX:119384484-119384564 4e-05 29_[+4]_43 chr19:54682351-54682431 5.4e-05 4_[+4]_68 chr16:56228594-56228674 5.4e-05 57_[+4]_15 chr19:55896938-55897018 7e-05 7_[+4]_65 chr10:64576585-64576665 7.4e-05 71_[+4]_1 chr6:26305645-26305725 7.9e-05 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAARAAAC width=8 seqs=19 chr5:131515960-131516040 ( 26) AAAAAAAC 1 chr19:49224346-49224426 ( 2) AAAAAAAC 1 chr11:696553-696633 ( 50) AAAAAAAC 1 chr19:49416527-49416607 ( 28) AAAAAAAC 1 chr13:41768712-41768792 ( 62) AAAGAAAC 1 chr19:45348934-45349014 ( 7) AAAGAAAC 1 chr19:47616716-47616796 ( 50) AAAGAAAA 1 chr2:19562880-19562960 ( 45) AAAGAAAA 1 chr1:222638319-222638399 ( 10) AAAACAAC 1 chr19:49385144-49385224 ( 45) AGAAAAAC 1 chr20:45318437-45318517 ( 4) AGAAAAAC 1 chrX:65383990-65384070 ( 49) AAAGAACC 1 chr17:47270169-47270249 ( 36) AAAGAACC 1 chrX:119384484-119384564 ( 30) AAAGAACC 1 chr19:54682351-54682431 ( 5) AAACAAAC 1 chr16:56228594-56228674 ( 58) AAAGCAAC 1 chr19:55896938-55897018 ( 8) AAAACAAA 1 chr10:64576585-64576665 ( 72) AGAAAAAA 1 chr6:26305645-26305725 ( 43) AAAAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 6.1e+000 233 -1089 -1089 -1089 208 -1089 -95 -1089 233 -1089 -1089 -1089 140 -249 47 -1089 208 -90 -1089 -1089 233 -1089 -1089 -1089 199 -90 -253 -1089 8 142 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.1e+000 1.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.157895 0.000000 1.000000 0.000000 0.000000 0.000000 0.526316 0.052632 0.421053 0.000000 0.842105 0.157895 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.789474 0.157895 0.052632 0.000000 0.210526 0.789474 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAC MEME-4 regular expression -------------------------------------------------------------------------------- AAA[AG]AAA[CA] -------------------------------------------------------------------------------- Time 16.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CYTCGGCT MEME-5 width = 8 sites = 32 llr = 268 E-value = 4.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:::::12 pos.-specific C 64:a::9: probability G 2:::aa:: matrix T :6a::::8 bits 2.3 * 2.1 * 1.9 ** 1.6 **** * Relative 1.4 ****** Entropy 1.2 ******* (12.1 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTCGGCT consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:122847746-122847826 37 1.96e-05 TTGGTGCAAT CTTCGGCT CTACTCGGCT chr1:21503416-21503496 32 1.96e-05 TGGGAAGCCT CTTCGGCT CTTTCCGGAG chr19:59070359-59070439 39 1.96e-05 GTTCGGCCTC CTTCGGCT GGACTCGGGC chr11:63606455-63606535 7 1.96e-05 TACCTT CTTCGGCT GTTTCCGGAA chr9:131314602-131314682 64 1.96e-05 CGCATTGTCG CTTCGGCT CCTTCCGGG chrX:117629573-117629653 49 1.96e-05 CACCCTCCTG CTTCGGCT GGTGGCGATC chr20:45318236-45318316 52 1.96e-05 CCTTCCGCCT CTTCGGCT ATCTCCGTAC chr19:54693619-54693699 18 1.96e-05 GGGCCACAAA CTTCGGCT CACTTCGGCA chr16:14013711-14013791 59 1.96e-05 CTCGGCTCTT CTTCGGCT GAGTTCGGCC chr2:74649217-74649297 41 6.16e-05 GCGCCTGGTG ATTCGGCT GCACCCCCAC chr9:74383506-74383586 43 6.16e-05 GGGGCAGGGG CCTCGGCT CGCTCTCTCC chr22:51021278-51021358 68 6.16e-05 CTCCGGCTCT ATTCGGCT CACGG chrX:70338392-70338472 37 6.16e-05 TCCCGGCGTA CCTCGGCT TCCCTCGGTA chr17:54911017-54911097 71 8.18e-05 TCGGCTAGAG GTTCGGCT CA chr11:1410920-1411000 71 8.18e-05 gggctcggct gttcggct tg chr11:60674088-60674168 36 1.01e-04 TTCCGGATTG ACTCGGCT CGTTCCGTAA chr20:39946345-39946425 58 1.01e-04 gccttgctcg actcggct gggGGCGTGG chr16:14013912-14013992 22 1.01e-04 GTCCTCTCGG ACTCGGCT CTCTTCGGTT chr7:11013323-11013403 69 1.01e-04 ctgggctttc actcggct ctgt chr7:105516905-105516985 48 1.21e-04 TTCCCTGTTC CTTCGGCA GCAGCAGCCG chr8:28558976-28559056 30 1.21e-04 GCGCGGCGCC CTTCGGCA AGTTCCGCAG chr2:208394497-208394577 54 1.21e-04 ACCCGAAGGT CTTCGGCA AGTTCCGTCC chr20:33735182-33735262 64 1.34e-04 CGAAGAGCAA CTTCGGAT GTACGGTTT chr2:61698185-61698265 38 1.63e-04 CTCGGGCTGC GCTCGGCT CTTTCCGCCC chr16:28936523-28936603 45 1.63e-04 TTCCGGATCC GCTCGGCT GTTTCCGGAT chr11:62369397-62369477 16 1.63e-04 TCGGGCAACC GCTCGGCT ATTTCCGTCG chr16:56228395-56228475 54 1.63e-04 GTTCGGCGAC GCTCGGCT AGGTTCGGTG chr1:160068436-160068516 11 2.05e-04 TCCCTCCAGC CCTCGGCA GTTCTGAAAC chr1:198126766-198126846 61 2.05e-04 GTCTGTCAGG ATTCGGCA GCAGCCCGAC chr22:36425100-36425180 1 2.05e-04 . ccTCGGCA ATCTCCGTAG chr6:52860363-52860443 51 2.33e-04 CGCTTGGGTA CCTCggat gtgagggcga chr14:23564463-23564543 9 2.33e-04 CCGGATGT CCTCGGAT GTTTCCGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:122847746-122847826 2e-05 36_[+5]_36 chr1:21503416-21503496 2e-05 31_[+5]_41 chr19:59070359-59070439 2e-05 38_[+5]_34 chr11:63606455-63606535 2e-05 6_[+5]_66 chr9:131314602-131314682 2e-05 63_[+5]_9 chrX:117629573-117629653 2e-05 48_[+5]_24 chr20:45318236-45318316 2e-05 51_[+5]_21 chr19:54693619-54693699 2e-05 17_[+5]_55 chr16:14013711-14013791 2e-05 58_[+5]_14 chr2:74649217-74649297 6.2e-05 40_[+5]_32 chr9:74383506-74383586 6.2e-05 42_[+5]_30 chr22:51021278-51021358 6.2e-05 67_[+5]_5 chrX:70338392-70338472 6.2e-05 36_[+5]_36 chr17:54911017-54911097 8.2e-05 70_[+5]_2 chr11:1410920-1411000 8.2e-05 70_[+5]_2 chr11:60674088-60674168 0.0001 35_[+5]_37 chr20:39946345-39946425 0.0001 57_[+5]_15 chr16:14013912-14013992 0.0001 21_[+5]_51 chr7:11013323-11013403 0.0001 68_[+5]_4 chr7:105516905-105516985 0.00012 47_[+5]_25 chr8:28558976-28559056 0.00012 29_[+5]_43 chr2:208394497-208394577 0.00012 53_[+5]_19 chr20:33735182-33735262 0.00013 63_[+5]_9 chr2:61698185-61698265 0.00016 37_[+5]_35 chr16:28936523-28936603 0.00016 44_[+5]_28 chr11:62369397-62369477 0.00016 15_[+5]_57 chr16:56228395-56228475 0.00016 53_[+5]_19 chr1:160068436-160068516 0.00021 10_[+5]_62 chr1:198126766-198126846 0.00021 60_[+5]_12 chr22:36425100-36425180 0.00021 [+5]_72 chr6:52860363-52860443 0.00023 50_[+5]_22 chr14:23564463-23564543 0.00023 8_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTCGGCT width=8 seqs=32 chr5:122847746-122847826 ( 37) CTTCGGCT 1 chr1:21503416-21503496 ( 32) CTTCGGCT 1 chr19:59070359-59070439 ( 39) CTTCGGCT 1 chr11:63606455-63606535 ( 7) CTTCGGCT 1 chr9:131314602-131314682 ( 64) CTTCGGCT 1 chrX:117629573-117629653 ( 49) CTTCGGCT 1 chr20:45318236-45318316 ( 52) CTTCGGCT 1 chr19:54693619-54693699 ( 18) CTTCGGCT 1 chr16:14013711-14013791 ( 59) CTTCGGCT 1 chr2:74649217-74649297 ( 41) ATTCGGCT 1 chr9:74383506-74383586 ( 43) CCTCGGCT 1 chr22:51021278-51021358 ( 68) ATTCGGCT 1 chrX:70338392-70338472 ( 37) CCTCGGCT 1 chr17:54911017-54911097 ( 71) GTTCGGCT 1 chr11:1410920-1411000 ( 71) GTTCGGCT 1 chr11:60674088-60674168 ( 36) ACTCGGCT 1 chr20:39946345-39946425 ( 58) ACTCGGCT 1 chr16:14013912-14013992 ( 22) ACTCGGCT 1 chr7:11013323-11013403 ( 69) ACTCGGCT 1 chr7:105516905-105516985 ( 48) CTTCGGCA 1 chr8:28558976-28559056 ( 30) CTTCGGCA 1 chr2:208394497-208394577 ( 54) CTTCGGCA 1 chr20:33735182-33735262 ( 64) CTTCGGAT 1 chr2:61698185-61698265 ( 38) GCTCGGCT 1 chr16:28936523-28936603 ( 45) GCTCGGCT 1 chr11:62369397-62369477 ( 16) GCTCGGCT 1 chr16:56228395-56228475 ( 54) GCTCGGCT 1 chr1:160068436-160068516 ( 11) CCTCGGCA 1 chr1:198126766-198126846 ( 61) ATTCGGCA 1 chr22:36425100-36425180 ( 1) CCTCGGCA 1 chr6:52860363-52860443 ( 51) CCTCGGAT 1 chr14:23564463-23564543 ( 9) CCTCGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 4.9e+000 14 101 -70 -1164 -1164 57 -1164 149 -1164 -1164 -1164 232 -1164 176 -1164 -1164 -1164 -1164 171 -1164 -1164 -1164 171 -1164 -108 162 -1164 -1164 -8 -1164 -1164 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.9e+000 0.218750 0.593750 0.187500 0.000000 0.000000 0.437500 0.000000 0.562500 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.093750 0.906250 0.000000 0.000000 0.187500 0.000000 0.000000 0.812500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTCGGCT MEME-5 regular expression -------------------------------------------------------------------------------- [CA][TC]TCGGCT -------------------------------------------------------------------------------- Time 19.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:89974048-89974128 1.31e-01 80 chr11:695384-695464 5.74e-01 80 chr16:14013711-14013791 1.63e-01 37_[+5(1.96e-05)]_13_[+5(1.96e-05)]_\ 14 chr10:64576585-64576665 7.06e-02 71_[+4(7.38e-05)]_1 chr19:54694586-54694666 3.07e-01 80 chr2:208394497-208394577 4.35e-02 80 chr19:54693619-54693699 4.18e-02 17_[+5(1.96e-05)]_55 chr16:25026802-25026882 5.47e-01 80 chr19:55896938-55897018 7.21e-02 7_[+4(7.00e-05)]_65 chr1:97187331-97187411 4.96e-01 80 chr11:63606252-63606332 8.15e-03 80 chr16:56228395-56228475 6.32e-02 80 chr11:62369397-62369477 8.70e-02 80 chr1:155829172-155829252 3.94e-01 80 chr20:45318437-45318517 2.95e-04 3_[+4(3.20e-05)]_69 chr19:56165792-56165872 1.00e-01 80 chrX:70338392-70338472 3.48e-02 36_[+5(6.16e-05)]_36 chr20:45318236-45318316 2.16e-02 51_[+5(1.96e-05)]_21 chr5:14143323-14143403 3.43e-01 80 chr22:36425100-36425180 1.24e-01 80 chr3:13936957-13937037 8.41e-01 80 chr19:18335385-18335465 3.49e-01 80 chr13:107220505-10722058 9.40e-01 80 chr11:1410920-1411000 3.47e-01 31_[+5(8.18e-05)]_5_[+5(8.18e-05)]_\ 18_[+5(8.18e-05)]_2 chr12:49760542-49760622 3.76e-01 80 chrX:117629573-117629653 7.12e-02 48_[+5(1.96e-05)]_24 chr19:7099128-7099208 6.47e-01 80 chr12:122018131-12201821 3.84e-01 80 chr2:19562880-19562960 2.61e-04 27_[+1(1.36e-05)]_9_[+4(1.55e-05)]_\ 28 chr1:41328277-41328357 5.84e-01 80 chr8:30670359-30670439 6.24e-01 80 chr22:51021278-51021358 2.72e-01 67_[+5(6.16e-05)]_5 chr16:56228594-56228674 1.36e-01 57_[+4(5.41e-05)]_15 chr4:699610-699690 3.83e-01 80 chr11:63604845-63604925 8.07e-01 80 chr1:2159253-2159333 2.32e-01 80 chr19:45348934-45349014 5.50e-02 6_[+4(9.26e-06)]_66 chr11:8054845-8054925 6.04e-01 80 chr9:131314602-131314682 3.23e-02 63_[+5(1.96e-05)]_9 chr22:37595520-37595600 9.24e-01 80 chr12:52345120-52345200 4.96e-01 80 chr4:128703296-128703376 1.63e-01 80 chr16:3930835-3930915 4.08e-01 80 chr11:63639608-63639688 1.23e-02 69_[+1(8.60e-05)]_3 chr15:69755176-69755256 4.42e-01 80 chr16:28936523-28936603 2.24e-01 80 chrX:80377293-80377373 9.50e-01 80 chr11:63606455-63606535 6.70e-03 6_[+5(1.96e-05)]_66 chr2:17699760-17699840 9.93e-01 80 chr8:28558976-28559056 4.19e-02 80 chr7:11013323-11013403 3.87e-01 80 chr11:695586-695666 2.39e-01 80 chr4:6271241-6271321 2.30e-01 80 chr19:18263492-18263572 7.69e-01 80 chr16:1660800-1660880 5.05e-02 80 chr17:45266856-45266936 6.40e-01 80 chr22:24236276-24236356 4.14e-01 80 chr19:49385144-49385224 9.38e-08 1_[+3(8.26e-06)]_35_[+4(3.20e-05)]_\ 10_[+1(8.60e-05)]_1_[+2(1.21e-05)]_1 chr19:49362011-49362091 2.65e-03 63_[+1(8.60e-05)]_9 chr2:61698185-61698265 3.82e-01 80 chr19:49310028-49310108 3.82e-05 4_[+3(2.04e-05)]_53_[+1(1.36e-05)]_\ 7 chr3:13937158-13937238 5.99e-01 80 chr19:49404485-49404565 2.51e-02 80 chr14:77843485-77843565 7.57e-01 80 chr19:56165996-56166076 1.16e-02 80 chr2:207024179-207024259 3.22e-01 80 chr13:45151666-45151746 7.07e-01 80 chr16:22202003-22202083 9.76e-01 80 chr9:74383506-74383586 2.28e-01 42_[+5(6.16e-05)]_30 chr14:23564463-23564543 1.61e-01 80 chr19:49416527-49416607 1.61e-06 5_[+3(8.26e-06)]_14_[+4(3.66e-06)]_\ 32_[+1(3.42e-05)]_5 chr19:17622277-17622357 9.93e-01 80 chrX:119384484-119384564 3.93e-02 29_[+4(4.03e-05)]_43 chr19:55816993-55817073 3.04e-03 6_[+3(3.29e-05)]_66 chr2:74881314-74881394 7.16e-01 80 chr7:105516905-105516985 6.41e-02 80 chr3:49577239-49577319 6.41e-01 80 chr17:45266648-45266728 5.62e-01 80 chr13:44716193-44716273 4.00e-01 80 chr16:14013912-14013992 1.54e-01 80 chr19:1123181-1123261 7.88e-01 80 chr2:48009822-48009902 8.40e-01 80 chr8:77912428-77912508 1.34e-01 80 chr19:49248620-49248700 2.62e-04 55_[+1(1.36e-05)]_1_[+2(6.07e-06)]_\ 8 chr16:68482586-68482666 1.26e-03 24_[+1(1.36e-05)]_1_[+2(4.31e-05)]_\ 39 chr19:49228246-49228326 3.46e-04 10_[+3(2.04e-05)]_52_[+1(1.36e-05)]_\ 2 chr19:59070359-59070439 5.26e-03 38_[+5(1.96e-05)]_34 chr4:113445181-113445261 4.30e-02 80 chr13:44716440-44716520 2.56e-01 80 chr19:49486872-49486952 1.28e-04 11_[+1(8.60e-05)]_26_[+1(1.36e-05)]_\ 1_[+2(6.07e-06)]_18 chr19:54480861-54480941 1.02e-03 7_[+3(2.04e-05)]_65 chr3:119813571-119813651 1.58e-01 80 chr19:54396434-54396514 2.56e-04 59_[+1(8.60e-05)]_1_[+2(4.31e-05)]_\ 4 chr19:47616716-47616796 8.97e-02 49_[+4(1.55e-05)]_23 chr15:67546669-67546749 7.04e-02 80 chr19:49013941-49014021 2.35e-03 67_[+2(6.07e-06)]_5 chr19:37329212-37329292 3.63e-01 80 chrX:16804316-16804396 5.91e-04 22_[+1(3.42e-05)]_1_[+2(2.10e-05)]_\ 41 chr2:208394698-208394778 4.68e-02 62_[+2(3.91e-05)]_10 chr19:18335179-18335259 8.42e-01 80 chr13:45914713-45914793 8.93e-01 80 chr19:55690504-55690584 1.41e-03 8_[+3(2.04e-05)]_52_[+1(3.42e-05)]_\ 4 chr1:198126766-198126846 1.65e-02 80 chrX:70503397-70503477 7.16e-01 80 chr13:98085539-98085619 4.50e-01 80 chr19:55831277-55831357 1.36e-03 5_[+3(3.29e-05)]_54_[+1(3.42e-05)]_\ 5 chr12:110906475-11090655 8.64e-01 80 chr17:47270169-47270249 2.50e-02 35_[+4(4.03e-05)]_37 chr4:76650385-76650465 5.37e-01 80 chr1:63782756-63782836 9.77e-01 80 chr7:6543398-6543478 4.16e-01 80 chr19:18263696-18263776 2.65e-02 80 chr18:23671094-23671174 3.35e-01 80 chr6:27551223-27551303 4.92e-01 80 chr19:51142563-51142643 1.47e-04 61_[+1(3.42e-05)]_11 chr1:31885886-31885966 6.93e-01 80 chr5:175875090-175875170 9.76e-01 80 chr9:79009272-79009352 7.33e-01 80 chr19:54682351-54682431 3.11e-03 4_[+4(5.41e-05)]_3_[+3(8.26e-06)]_\ 57 chr4:113558470-113558550 8.99e-01 80 chr19:55815801-55815881 1.00e-01 67_[+1(5.42e-05)]_5 chr7:20257100-20257180 2.18e-01 80 chr7:26240872-26240952 1.99e-01 80 chr19:7616349-7616429 1.38e-03 7_[+2(2.99e-05)]_14_[+1(3.42e-05)]_\ 23_[+1(3.42e-05)]_12 chr7:6413944-6414024 9.84e-01 80 chr15:79152920-79153000 7.03e-01 80 chr19:49148188-49148268 5.88e-05 [+3(2.04e-05)]_62_[+2(6.07e-06)]_2 chr18:3448015-3448095 7.96e-01 80 chrX:18693006-18693086 2.93e-01 80 chr6:56407664-56407744 2.50e-01 80 chr19:51893798-51893878 3.81e-01 80 chr19:49422143-49422223 7.24e-04 6_[+3(2.04e-05)]_52_[+1(3.42e-05)]_\ 6 chr20:33735182-33735262 2.32e-02 80 chr2:207024381-207024461 1.56e-01 80 chr1:21503416-21503496 6.61e-02 31_[+5(1.96e-05)]_41 chr17:7118407-7118487 2.95e-03 10_[+3(2.04e-05)]_54_[+1(6.33e-05)] chr19:4328456-4328536 7.21e-01 80 chr7:63386705-63386785 2.93e-03 58_[+1(3.42e-05)]_14 chr4:128703496-128703576 5.02e-01 80 chr19:44555994-44556074 2.09e-03 8_[+2(6.06e-05)]_52_[+1(1.36e-05)]_\ 4 chr3:184081009-184081089 6.14e-02 80 chr19:50651536-50651616 9.31e-02 11_[+3(4.13e-05)]_61 chr19:54411489-54411569 5.37e-04 63_[+1(8.60e-05)]_1_[+2(2.99e-05)] chr19:41084528-41084608 9.66e-04 31_[+2(3.91e-05)]_41 chr3:13938209-13938289 8.72e-01 80 chr20:39946345-39946425 3.39e-01 80 chr17:8022444-8022524 1.95e-01 80 chr19:47616514-47616594 6.85e-01 80 chr4:113558270-113558350 3.28e-01 80 chr16:31885021-31885101 8.19e-01 80 chr7:100034240-100034320 1.59e-01 80 chr2:198318206-198318286 6.85e-01 80 chr19:49479591-49479671 6.92e-04 7_[+3(2.04e-05)]_50_[+1(3.42e-05)]_\ 7 chr5:64920469-64920549 1.57e-01 80 chr3:169489998-169490078 2.72e-01 80 chr2:86332692-86332772 5.76e-04 59_[+1(1.36e-05)]_13 chr2:74649217-74649297 2.66e-02 40_[+5(6.16e-05)]_32 chr13:114428171-11442825 4.27e-01 80 chr19:19887272-19887352 4.37e-03 49_[+3(2.04e-05)]_23 chr12:49760743-49760823 7.66e-02 63_[+3(8.26e-06)]_9 chr22:35653374-35653454 7.22e-01 80 chr13:31736518-31736598 1.60e-03 17_[+1(3.42e-05)]_1_[+2(6.06e-05)]_\ 14_[+1(3.42e-05)]_12_[+1(1.36e-05)]_4 chr17:40706773-40706853 4.05e-01 80 chr22:42466798-42466878 7.62e-02 80 chr1:21503620-21503700 1.24e-01 80 chr6:157801094-157801174 1.33e-03 16_[+2(6.07e-06)]_56 chr11:60681313-60681393 7.16e-02 80 chr19:3572709-3572789 3.13e-01 80 chr2:119532220-119532300 2.74e-01 80 chr19:49250499-49250579 6.38e-03 67_[+2(1.21e-05)]_5 chr8:28588368-28588448 2.24e-02 5_[+1(3.42e-05)]_67 chr2:70476139-70476219 7.90e-01 80 chr2:97534352-97534432 4.36e-01 80 chr17:38804215-38804295 2.00e-01 80 chr5:122847746-122847826 5.69e-02 36_[+5(1.96e-05)]_36 chr10:38383160-38383240 6.29e-03 15_[+2(2.99e-05)]_57 chr14:21099331-21099411 1.05e-01 80 chr17:81060515-81060595 6.61e-01 80 chr1:160068436-160068516 5.88e-02 80 chr13:41768712-41768792 2.38e-02 61_[+4(9.26e-06)]_11 chr2:23598480-23598560 1.04e-04 25_[+1(3.42e-05)]_1_[+2(2.99e-05)]_\ 22_[+2(2.99e-05)]_8 chr19:55709052-55709132 2.72e-04 66_[+1(8.60e-05)]_6 chr11:60674088-60674168 5.44e-02 80 chr2:239143011-239143091 5.45e-02 15_[+3(5.36e-05)]_57 chr16:285400-285480 1.33e-01 80 chr22:30163074-30163154 4.02e-04 37_[+1(1.36e-05)]_1_[+2(6.07e-06)]_\ 26 chr7:43622565-43622645 1.00e+00 80 chr8:33330701-33330781 4.58e-01 80 chr7:66395430-66395510 9.78e-01 80 chr11:63607212-63607292 8.10e-01 80 chr16:25027003-25027083 2.12e-01 80 chr1:41414721-41414801 8.07e-01 80 chr12:861521-861601 7.56e-04 6_[+3(2.04e-05)]_66 chr6:31866313-31866393 4.83e-04 21_[+1(1.36e-05)]_34_[+1(1.36e-05)]_\ 1_[+2(6.07e-06)] chr6:52860363-52860443 1.11e-01 80 chrX:65383990-65384070 4.66e-03 48_[+4(4.03e-05)]_24 chr10:123687612-12368769 5.36e-01 80 chr6:27559603-27559683 1.14e-01 80 chr19:55677450-55677530 2.60e-02 60_[+1(1.36e-05)]_12 chr17:19411466-19411546 8.76e-01 80 chr19:50163169-50163249 5.32e-05 53_[+1(3.42e-05)]_1_[+2(6.07e-06)]_\ 10 chr16:75467468-75467548 1.88e-04 33_[+2(2.10e-05)]_39 chr6:28626015-28626095 5.39e-01 80 chr5:172484406-172484486 6.38e-01 80 chr6:10147344-10147424 8.05e-02 4_[+3(4.13e-05)]_68 chr6:26305645-26305725 3.70e-02 42_[+4(7.94e-05)]_30 chr20:37419253-37419333 3.93e-01 80 chr1:151254556-151254636 2.54e-01 80 chr14:21151447-21151527 5.61e-01 80 chr3:119813770-119813850 6.66e-02 80 chr6:27515543-27515623 3.20e-02 80 chr12:95867656-95867736 1.60e-01 80 chr19:45988718-45988798 2.43e-05 1_[+3(3.29e-05)]_62_[+2(2.99e-05)]_\ 1 chr21:15755505-15755585 6.82e-03 24_[+2(2.99e-05)]_48 chr7:150689949-150690029 2.72e-02 65_[+1(1.36e-05)]_7 chr16:3207354-3207434 6.81e-01 80 chr7:148660345-148660425 3.97e-01 80 chr11:46134670-46134750 6.54e-02 80 chr6:149067966-149068046 1.55e-01 80 chr13:107220704-10722078 3.37e-01 80 chr17:54911017-54911097 1.41e-01 70_[+5(8.18e-05)]_2 chr11:696553-696633 1.85e-02 49_[+4(3.66e-06)]_23 chr1:205744616-205744696 3.85e-04 57_[+1(5.42e-05)]_1_[+2(7.84e-05)]_\ 6 chr17:76778622-76778702 2.75e-01 80 chr3:42922609-42922689 4.93e-01 80 chr14:58706627-58706707 1.46e-01 80 chr1:171750406-171750486 7.25e-01 80 chr19:2456102-2456182 6.08e-01 80 chr10:28821897-28821977 6.85e-01 80 chr17:37310768-37310848 5.41e-01 80 chr6:27759103-27759183 3.40e-02 80 chr4:48782421-48782501 6.08e-01 80 chr19:12947204-12947284 6.08e-01 80 chr10:105881516-10588159 5.80e-01 80 chr9:2241986-2242066 7.86e-01 80 chr19:3093960-3094040 9.12e-01 80 chr2:238875510-238875590 2.04e-01 80 chr18:71815685-71815765 4.43e-01 80 chr19:49224346-49224426 3.80e-04 1_[+4(3.66e-06)]_71 chr16:25118471-25118551 9.90e-01 80 chr8:144152504-144152584 3.24e-01 80 chr16:30908458-30908538 5.51e-02 80 chr11:66115620-66115700 6.19e-01 80 chr1:224544440-224544520 1.96e-02 2_[+3(8.26e-06)]_70 chr19:54692254-54692334 1.03e-01 80 chr1:222638319-222638399 4.57e-03 9_[+4(2.64e-05)]_63 chr8:145159210-145159290 9.00e-01 80 chr5:131515960-131516040 1.51e-02 25_[+4(3.66e-06)]_47 chrX:47093035-47093115 7.37e-01 80 chr6:27302792-27302872 7.92e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************