******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/DDX20.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:206138146-206138226 1.0000 80 chr7:130756966-130757046 1.0000 80 chr9:115308591-115308671 1.0000 80 chr10:104261964-10426204 1.0000 80 chr6:15896078-15896158 1.0000 80 chr1:143913394-143913474 1.0000 80 chr7:32674711-32674791 1.0000 80 chr22:37172256-37172336 1.0000 80 chr11:118583485-11858356 1.0000 80 chrX:109244159-109244239 1.0000 80 chr10:94589711-94589791 1.0000 80 chr17:44302765-44302845 1.0000 80 chr2:71454308-71454388 1.0000 80 chr4:48782458-48782538 1.0000 80 chr11:76622253-76622333 1.0000 80 chr1:120838592-120838672 1.0000 80 chr2:106084663-106084743 1.0000 80 chrX:46988611-46988691 1.0000 80 chr17:46902915-46902995 1.0000 80 chr14:103893961-10389404 1.0000 80 chr20:45035308-45035388 1.0000 80 chr19:11457040-11457120 1.0000 80 chr7:100825860-100825940 1.0000 80 chr16:57769535-57769615 1.0000 80 chr1:25757185-25757265 1.0000 80 chr10:45906433-45906513 1.0000 80 chr2:136288814-136288894 1.0000 80 chr11:107798899-10779897 1.0000 80 chr15:45876045-45876125 1.0000 80 chr19:36193342-36193422 1.0000 80 chr1:61543725-61543805 1.0000 80 chr1:27354620-27354700 1.0000 80 chr7:12787544-12787624 1.0000 80 chr8:41316022-41316102 1.0000 80 chr15:40389440-40389520 1.0000 80 chr11:61872785-61872865 1.0000 80 chr8:145159235-145159315 1.0000 80 chr12:83590586-83590666 1.0000 80 chr17:21837441-21837521 1.0000 80 chr17:60711471-60711551 1.0000 80 chr7:73574703-73574783 1.0000 80 chr5:168008264-168008344 1.0000 80 chr4:52709125-52709205 1.0000 80 chr11:44552072-44552152 1.0000 80 chr2:74685564-74685644 1.0000 80 chr14:78083250-78083330 1.0000 80 chr14:73925373-73925453 1.0000 80 chr1:1070855-1070935 1.0000 80 chr21:47604561-47604641 1.0000 80 chr22:38054396-38054476 1.0000 80 chr15:75744123-75744203 1.0000 80 chr1:236515164-236515244 1.0000 80 chr19:2375513-2375593 1.0000 80 chr14:70163718-70163798 1.0000 80 chr22:40440656-40440736 1.0000 80 chr5:132308014-132308094 1.0000 80 chr1:38397719-38397799 1.0000 80 chr1:110406925-110407005 1.0000 80 chr20:2506433-2506513 1.0000 80 chr22:29999335-29999415 1.0000 80 chr6:2980528-2980608 1.0000 80 chr6:110939413-110939493 1.0000 80 chr17:39943146-39943226 1.0000 80 chr7:150019648-150019728 1.0000 80 chr19:13906038-13906118 1.0000 80 chr6:110939213-110939293 1.0000 80 chr17:8534202-8534282 1.0000 80 chr17:74597819-74597899 1.0000 80 chr2:73460447-73460527 1.0000 80 chr1:151254564-151254644 1.0000 80 chrX:49125694-49125774 1.0000 80 chr22:39101518-39101598 1.0000 80 chr22:35696154-35696234 1.0000 80 chr2:74685365-74685445 1.0000 80 chr19:45394320-45394400 1.0000 80 chr14:104181860-10418194 1.0000 80 chr17:4870673-4870753 1.0000 80 chr9:115308796-115308876 1.0000 80 chr10:29101071-29101151 1.0000 80 chr11:68120251-68120331 1.0000 80 chr4:175204382-175204462 1.0000 80 chr11:75526128-75526208 1.0000 80 chrX:40430592-40430672 1.0000 80 chr18:12904133-12904213 1.0000 80 chr10:101380297-10138037 1.0000 80 chr9:138313384-138313464 1.0000 80 chr17:45177660-45177740 1.0000 80 chr3:45103661-45103741 1.0000 80 chr8:98775213-98775293 1.0000 80 chr8:25315998-25316078 1.0000 80 chr4:185260667-185260747 1.0000 80 chr19:19174482-19174562 1.0000 80 chr7:32720586-32720666 1.0000 80 chr5:176853340-176853420 1.0000 80 chr1:38397515-38397595 1.0000 80 chr17:74667882-74667962 1.0000 80 chr17:25902295-25902375 1.0000 80 chr7:32945034-32945114 1.0000 80 chr12:113658961-11365904 1.0000 80 chr2:26980878-26980958 1.0000 80 chr19:54641276-54641356 1.0000 80 chr3:99495625-99495705 1.0000 80 chr12:8179291-8179371 1.0000 80 chr11:67275738-67275818 1.0000 80 chr6:158100724-158100804 1.0000 80 chr3:114866242-114866322 1.0000 80 chr1:23923792-23923872 1.0000 80 chr1:22118074-22118154 1.0000 80 chr17:80325857-80325937 1.0000 80 chr17:43697609-43697689 1.0000 80 chr2:9309540-9309620 1.0000 80 chr16:20956634-20956714 1.0000 80 chr11:277586-277666 1.0000 80 chr3:88108233-88108313 1.0000 80 chr15:101137166-10113724 1.0000 80 chr2:238872952-238873032 1.0000 80 chr19:12551916-12551996 1.0000 80 chr6:147208413-147208493 1.0000 80 chr10:70570299-70570379 1.0000 80 chr10:42863505-42863585 1.0000 80 chr1:113932878-113932958 1.0000 80 chr1:153895564-153895644 1.0000 80 chr8:71314382-71314462 1.0000 80 chr16:22385990-22386070 1.0000 80 chr14:23790493-23790573 1.0000 80 chr12:49504686-49504766 1.0000 80 chr9:37465733-37465813 1.0000 80 chr7:72298905-72298985 1.0000 80 chr19:36505179-36505259 1.0000 80 chr7:2884096-2884176 1.0000 80 chr12:32174025-32174105 1.0000 80 chr3:129418241-129418321 1.0000 80 chr2:44395511-44395591 1.0000 80 chr12:122028204-12202828 1.0000 80 chr3:194489996-194490076 1.0000 80 chr19:51161556-51161636 1.0000 80 chr16:77224644-77224724 1.0000 80 chr7:32945239-32945319 1.0000 80 chr2:62081724-62081804 1.0000 80 chr3:113415656-113415736 1.0000 80 chr1:24742171-24742251 1.0000 80 chr5:32313307-32313387 1.0000 80 chr2:47525391-47525471 1.0000 80 chr3:40393762-40393842 1.0000 80 chr22:29548971-29549051 1.0000 80 chr10:48402562-48402642 1.0000 80 chr6:32146031-32146111 1.0000 80 chr20:40247074-40247154 1.0000 80 chr2:65283357-65283437 1.0000 80 chrX:48539039-48539119 1.0000 80 chr19:18315099-18315179 1.0000 80 chr18:14132482-14132562 1.0000 80 chr9:35072752-35072832 1.0000 80 chr17:47270321-47270401 1.0000 80 chr22:36784199-36784279 1.0000 80 chr11:35364915-35364995 1.0000 80 chr1:100001134-100001214 1.0000 80 chr6:80247163-80247243 1.0000 80 chr11:67798024-67798104 1.0000 80 chr19:2945022-2945102 1.0000 80 chr16:30382110-30382190 1.0000 80 chr19:14228668-14228748 1.0000 80 chr4:123828134-123828214 1.0000 80 chr11:62521656-62521736 1.0000 80 chr9:34989515-34989595 1.0000 80 chr8:91592739-91592819 1.0000 80 chr11:75401450-75401530 1.0000 80 chr14:96001165-96001245 1.0000 80 chr19:12847804-12847884 1.0000 80 chr5:180603379-180603459 1.0000 80 chrX:49047652-49047732 1.0000 80 chr1:150669779-150669859 1.0000 80 chr2:62932643-62932723 1.0000 80 chr19:35656191-35656271 1.0000 80 chr1:159047049-159047129 1.0000 80 chr9:117319490-117319570 1.0000 80 chr11:61407717-61407797 1.0000 80 chr19:42901174-42901254 1.0000 80 chr1:150601642-150601722 1.0000 80 chr5:125849857-125849937 1.0000 80 chr17:26235420-26235500 1.0000 80 chr11:63953423-63953503 1.0000 80 chr7:8008273-8008353 1.0000 80 chr8:27697279-27697359 1.0000 80 chr18:71959283-71959363 1.0000 80 chr17:18086685-18086765 1.0000 80 chr19:36248878-36248958 1.0000 80 chr15:75744351-75744431 1.0000 80 chr4:124239-124319 1.0000 80 chr19:46087717-46087797 1.0000 80 chr7:157100640-157100720 1.0000 80 chr19:3971235-3971315 1.0000 80 chr17:46125532-46125612 1.0000 80 chr9:101614040-101614120 1.0000 80 chr14:94492588-94492668 1.0000 80 chr13:111368106-11136818 1.0000 80 chr17:47866525-47866605 1.0000 80 chr12:107504010-10750409 1.0000 80 chr9:135905957-135906037 1.0000 80 chr4:68587573-68587653 1.0000 80 chr2:208637347-208637427 1.0000 80 chr17:79196835-79196915 1.0000 80 chr19:19496438-19496518 1.0000 80 chr11:68227946-68228026 1.0000 80 chr19:50878202-50878282 1.0000 80 chr19:12405705-12405785 1.0000 80 chr20:3869856-3869936 1.0000 80 chr13:20532753-20532833 1.0000 80 chr1:6845250-6845330 1.0000 80 chr17:61627657-61627737 1.0000 80 chr16:53537354-53537434 1.0000 80 chr7:112579940-112580020 1.0000 80 chr17:58755070-58755150 1.0000 80 chr9:139780765-139780845 1.0000 80 chr12:127392642-12739272 1.0000 80 chr2:208663492-208663572 1.0000 80 chr7:100184130-100184210 1.0000 80 chr12:68726214-68726294 1.0000 80 chr1:9834928-9835008 1.0000 80 chr19:46498521-46498601 1.0000 80 chr6:151550607-151550687 1.0000 80 chr20:23331245-23331325 1.0000 80 chr7:138043973-138044053 1.0000 80 chr19:4472044-4472124 1.0000 80 chr12:27676968-27677048 1.0000 80 chr20:2506642-2506722 1.0000 80 chr16:639761-639841 1.0000 80 chr16:67217568-67217648 1.0000 80 chr19:45873896-45873976 1.0000 80 chr2:97587929-97588009 1.0000 80 chr6:32143925-32144005 1.0000 80 chr2:88927166-88927246 1.0000 80 chr13:20437813-20437893 1.0000 80 chr3:12824099-12824179 1.0000 80 chr12:53473212-53473292 1.0000 80 chr14:21737702-21737782 1.0000 80 chr1:12717663-12717743 1.0000 80 chr8:68279265-68279345 1.0000 80 chr19:39340966-39341046 1.0000 80 chr7:23053770-23053850 1.0000 80 chr6:34499631-34499711 1.0000 80 chr5:159546597-159546677 1.0000 80 chr11:59383424-59383504 1.0000 80 chr22:41032803-41032883 1.0000 80 chr19:6425257-6425337 1.0000 80 chr19:1041087-1041167 1.0000 80 chr16:84538262-84538342 1.0000 80 chr16:1728149-1728229 1.0000 80 chr5:141826406-141826486 1.0000 80 chr1:117664512-117664592 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_DDX20/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/DDX20.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.23 C 0.266 G 0.267 T 0.236 Background letter frequencies (from file dataset with add-one prior applied): A 0.23 C 0.266 G 0.267 T 0.237 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCCHGGAA MEME-1 width = 8 sites = 87 llr = 821 E-value = 6.0e-107 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::22:aa pos.-specific C :aa4:::: probability G ::::8a:: matrix T a::4:::: bits 2.1 * ** 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** **** Entropy 1.1 *** **** (13.6 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTGGAA consensus CA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:141826406-141826486 62 1.50e-05 gttgggcaat tcctggaa ctgagggttc chr1:12717663-12717743 42 1.50e-05 tcatgaaaat tcctggaa aatggcggag chr7:138043973-138044053 44 1.50e-05 cccacccttt tcctggaa aaatcatgaa chr2:208663492-208663572 51 1.50e-05 cccacccctt tcctggaa acctcatgaa chr12:127392642-12739272 59 1.50e-05 tgtgggcagt tcctggaa ctgaaggttc chr19:50878202-50878282 25 1.50e-05 cctacccttt tcctggaa aactcatgaa chr7:157100640-157100720 67 1.50e-05 ggtgggcagt tcctggaa ctgagg chr5:125849857-125849937 55 1.50e-05 ggtgggcaat tcctggaa ttgagagttc chr4:123828134-123828214 33 1.50e-05 cctgcccctt tcctggaa aactcatgaa chrX:48539039-48539119 67 1.50e-05 cccacccctt tcctggaa aactca chr2:238872952-238873032 46 1.50e-05 gctgggcaat tcctggaa ctgaggggtc chr15:101137166-10113724 30 1.50e-05 cccacccatt tcctggaa accctctcct chr2:26980878-26980958 32 1.50e-05 ggcggggatt tcctggaa gtgagtgttc chr17:25902295-25902375 35 1.50e-05 ggcaggcaat tcctggaa ctgagggccc chr4:185260667-185260747 48 1.50e-05 ggtgggcaat tcctggaa ctgagggttc chr8:98775213-98775293 50 1.50e-05 tccacccctt tcctggaa aactcatgaa chr9:138313384-138313464 32 1.50e-05 tccacccctt tcctggaa aactcatgaa chr18:12904133-12904213 28 1.50e-05 cccgccttct tcctggaa aactcacgaa chrX:40430592-40430672 45 1.50e-05 ggtgggcaat tcctggaa ctgagggttc chr20:2506433-2506513 46 1.50e-05 ggtgggcagt tcctggaa ctgaaggttc chr5:132308014-132308094 59 1.50e-05 cctgcccctt tcctggaa aactcatgaa chr14:70163718-70163798 63 1.50e-05 gggtgggaat tcctggaa ctgagggttc chr1:236515164-236515244 28 1.50e-05 tcatgagaat tcctggaa aaaggtggag chr5:168008264-168008344 64 1.50e-05 tccgcccctt tcctggaa aactcgtga chr7:73574703-73574783 56 1.50e-05 cctaccccat tcctggaa aactcatgaa chr12:83590586-83590666 15 1.50e-05 tcatgaaaat tcctggaa aaaggtacag chr11:61872785-61872865 33 1.50e-05 tctgaccttt tcctggaa aattcatgaa chr15:45876045-45876125 39 1.50e-05 ggtgggcaat tcctggaa ctgagggttc chr14:103893961-10389404 27 1.50e-05 ggcagagatt tcctggaa ctgaaggtcc chr17:46902915-46902995 54 1.50e-05 ggtgggaaat tcctggaa atgagagttc chr11:76622253-76622333 67 1.50e-05 ggcgggcaat tcctggaa ctgagg chr6:15896078-15896158 47 1.50e-05 agtggtcaat tcctggaa ctgagggttc chr7:130756966-130757046 47 1.50e-05 tccacccctt tcctggaa aactcatgaa chr2:88927166-88927246 62 3.18e-05 GCTCATCAGT TCCCGGAA TACCTTTCCT chr20:23331245-23331325 60 3.18e-05 AAAGTGACAC TCCCGGAA GCTACCGCCT chr1:9834928-9835008 45 3.18e-05 tatgggaaat tcccggaa actgaggact chr2:208637347-208637427 61 3.18e-05 cccgcccctt tcccggaa actcatgaat chr9:117319490-117319570 34 3.18e-05 ggtgggaaat tcccggaa ctgagggttc chr1:159047049-159047129 67 3.18e-05 ggcgggcaat tcccggaa tcgggg chr22:29548971-29549051 48 3.18e-05 ggtggggagt tcccggaa ctgagggttc chr16:20956634-20956714 55 3.18e-05 cccacccctt tcccggaa aactcatgaa chr2:9309540-9309620 44 3.18e-05 gatgggcaat tcccggaa ctgagggttc chr3:45103661-45103741 47 3.18e-05 ccggtccctt tcccggaa agtcatgaat chr6:2980528-2980608 51 3.18e-05 tccacctctt tcccggaa aactcatgaa chr1:110406925-110407005 46 3.18e-05 ggtggagatt tcccggaa ccaaaggttc chr17:60711471-60711551 32 3.18e-05 ggtgggcaat tcccggaa ctgagggagt chr7:12787544-12787624 19 3.18e-05 tcatgagttt tcccggaa agacgtgggc chr11:118583485-11858356 53 3.18e-05 ggtgggcaat tcccggaa ctgagggttc chr17:26235420-26235500 66 4.64e-05 cccacccctt tccaggaa aactcag chr11:61407717-61407797 37 4.64e-05 aaccctcagt tccaggaa ttgcccaccc chr5:180603379-180603459 28 4.64e-05 tcatcagttt tccaggaa aggggtgggc chr11:75401450-75401530 56 4.64e-05 ttcacctttt tccaggaa ttttcatgaa chr8:91592739-91592819 64 4.64e-05 ttaaagtttt tccaggaa tcttcatga chr11:35364915-35364995 57 4.64e-05 ttcacctttt tccaggaa ccttcatgaa chr10:48402562-48402642 31 4.64e-05 CCAAGTAGGT TCCAGGAA AAAATACCAT chr3:40393762-40393842 6 4.64e-05 tcagt tccaggaa ctgtccaccc chr2:47525391-47525471 34 4.64e-05 agccctcagt tccaggaa ttgcccacct chr10:70570299-70570379 52 4.64e-05 ggcaagaatt tccaggaa ctgaggtttc chr6:147208413-147208493 12 4.64e-05 tcataagttt tccaggaa aggggtggac chr11:277586-277666 15 4.64e-05 tcatgagttt tccaggaa agtggtgggc chr1:23923792-23923872 29 4.64e-05 aatcctcagt tccaggaa ttgcccaccc chr7:32720586-32720666 28 4.64e-05 caccctcagt tccaggaa ttcccctccc chr17:74597819-74597899 40 4.64e-05 tattatgttt tccaggaa acgggtgggg chr6:110939213-110939293 42 4.64e-05 tccccctttt tccaggaa ttttcatgaa chr11:44552072-44552152 59 4.64e-05 ggcagagatt tccaggaa ctgaggactc chr8:41316022-41316102 29 4.64e-05 agccctcagt tccaggaa ttcccctccc chr10:45906433-45906513 64 4.64e-05 ggtgggcaat tccaggaa ctgaaggtt chr7:32674711-32674791 37 5.93e-05 AAAACATTTT TCCTAGAA AATGTTTTAG chr9:115308591-115308671 47 5.93e-05 cctgcccctt tcctagaa aacttatgaa chr8:68279265-68279345 20 7.38e-05 cccacccctt tcccagaa aactgatgaa chr3:12824099-12824179 38 7.38e-05 ggcggggagt tcccagaa tcatataagg chr6:32143925-32144005 29 7.38e-05 GCCAATCGTC TCCCAGAA ACTCTGGCAT chr2:97587929-97588009 46 7.38e-05 cccacccctt tcccagaa aactcataat chr6:151550607-151550687 20 7.38e-05 cccacacctt tcccagaa aaacgcatga chr4:68587573-68587653 65 7.38e-05 agtgggcaat tcccagaa ctgagggt chr12:107504010-10750409 48 7.38e-05 tccacccatt tcccagaa aactcatgaa chr9:101614040-101614120 65 7.38e-05 ggcgaggact tcccagaa ctgagggc chr19:35656191-35656271 51 7.38e-05 ggtgggcaat tcccagaa ctgaggattc chr1:100001134-100001214 53 7.38e-05 ggtgggcaat tcccagaa ctgacggctc chr12:32174025-32174105 58 7.38e-05 ggtgggtaat tcccagaa ctgagggttc chr1:22118074-22118154 40 7.38e-05 gatgggcatt tcccagaa ctgagagttc chr3:99495625-99495705 46 7.38e-05 ggtaggcaat tcccagaa ctgagggttc chr1:1070855-1070935 59 7.38e-05 ggcaggcaat tcccagaa gtgagggttc chr2:106084663-106084743 17 7.38e-05 ccaacctctt tcccagaa aactcatgaa chr10:94589711-94589791 47 7.38e-05 cccacccctt tcccagaa atctcatgaa chr10:29101071-29101151 50 1.03e-04 cccacccctt tccgggaa aactcattaa chr7:150019648-150019728 14 1.03e-04 aagcctcagt tccgggaa ctgcccaccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:141826406-141826486 1.5e-05 61_[+1]_11 chr1:12717663-12717743 1.5e-05 41_[+1]_31 chr7:138043973-138044053 1.5e-05 43_[+1]_29 chr2:208663492-208663572 1.5e-05 50_[+1]_22 chr12:127392642-12739272 1.5e-05 58_[+1]_14 chr19:50878202-50878282 1.5e-05 24_[+1]_48 chr7:157100640-157100720 1.5e-05 66_[+1]_6 chr5:125849857-125849937 1.5e-05 54_[+1]_18 chr4:123828134-123828214 1.5e-05 32_[+1]_40 chrX:48539039-48539119 1.5e-05 66_[+1]_6 chr2:238872952-238873032 1.5e-05 45_[+1]_27 chr15:101137166-10113724 1.5e-05 29_[+1]_43 chr2:26980878-26980958 1.5e-05 31_[+1]_41 chr17:25902295-25902375 1.5e-05 34_[+1]_38 chr4:185260667-185260747 1.5e-05 47_[+1]_25 chr8:98775213-98775293 1.5e-05 49_[+1]_23 chr9:138313384-138313464 1.5e-05 31_[+1]_41 chr18:12904133-12904213 1.5e-05 27_[+1]_45 chrX:40430592-40430672 1.5e-05 44_[+1]_28 chr20:2506433-2506513 1.5e-05 45_[+1]_27 chr5:132308014-132308094 1.5e-05 58_[+1]_14 chr14:70163718-70163798 1.5e-05 62_[+1]_10 chr1:236515164-236515244 1.5e-05 27_[+1]_45 chr5:168008264-168008344 1.5e-05 63_[+1]_9 chr7:73574703-73574783 1.5e-05 55_[+1]_17 chr12:83590586-83590666 1.5e-05 14_[+1]_58 chr11:61872785-61872865 1.5e-05 32_[+1]_40 chr15:45876045-45876125 1.5e-05 38_[+1]_34 chr14:103893961-10389404 1.5e-05 26_[+1]_46 chr17:46902915-46902995 1.5e-05 53_[+1]_19 chr11:76622253-76622333 1.5e-05 66_[+1]_6 chr6:15896078-15896158 1.5e-05 46_[+1]_26 chr7:130756966-130757046 1.5e-05 46_[+1]_26 chr2:88927166-88927246 3.2e-05 61_[+1]_11 chr20:23331245-23331325 3.2e-05 59_[+1]_13 chr1:9834928-9835008 3.2e-05 44_[+1]_28 chr2:208637347-208637427 3.2e-05 60_[+1]_12 chr9:117319490-117319570 3.2e-05 33_[+1]_39 chr1:159047049-159047129 3.2e-05 66_[+1]_6 chr22:29548971-29549051 3.2e-05 47_[+1]_25 chr16:20956634-20956714 3.2e-05 54_[+1]_18 chr2:9309540-9309620 3.2e-05 43_[+1]_29 chr3:45103661-45103741 3.2e-05 46_[+1]_26 chr6:2980528-2980608 3.2e-05 50_[+1]_22 chr1:110406925-110407005 3.2e-05 45_[+1]_27 chr17:60711471-60711551 3.2e-05 31_[+1]_41 chr7:12787544-12787624 3.2e-05 18_[+1]_54 chr11:118583485-11858356 3.2e-05 52_[+1]_20 chr17:26235420-26235500 4.6e-05 65_[+1]_7 chr11:61407717-61407797 4.6e-05 36_[+1]_36 chr5:180603379-180603459 4.6e-05 27_[+1]_45 chr11:75401450-75401530 4.6e-05 55_[+1]_17 chr8:91592739-91592819 4.6e-05 63_[+1]_9 chr11:35364915-35364995 4.6e-05 56_[+1]_16 chr10:48402562-48402642 4.6e-05 30_[+1]_42 chr3:40393762-40393842 4.6e-05 5_[+1]_67 chr2:47525391-47525471 4.6e-05 33_[+1]_39 chr10:70570299-70570379 4.6e-05 51_[+1]_21 chr6:147208413-147208493 4.6e-05 11_[+1]_61 chr11:277586-277666 4.6e-05 14_[+1]_58 chr1:23923792-23923872 4.6e-05 28_[+1]_44 chr7:32720586-32720666 4.6e-05 27_[+1]_45 chr17:74597819-74597899 4.6e-05 39_[+1]_33 chr6:110939213-110939293 4.6e-05 41_[+1]_31 chr11:44552072-44552152 4.6e-05 58_[+1]_14 chr8:41316022-41316102 4.6e-05 28_[+1]_44 chr10:45906433-45906513 4.6e-05 63_[+1]_9 chr7:32674711-32674791 5.9e-05 36_[+1]_36 chr9:115308591-115308671 5.9e-05 46_[+1]_26 chr8:68279265-68279345 7.4e-05 19_[+1]_53 chr3:12824099-12824179 7.4e-05 37_[+1]_35 chr6:32143925-32144005 7.4e-05 28_[+1]_44 chr2:97587929-97588009 7.4e-05 45_[+1]_27 chr6:151550607-151550687 7.4e-05 19_[+1]_53 chr4:68587573-68587653 7.4e-05 64_[+1]_8 chr12:107504010-10750409 7.4e-05 47_[+1]_25 chr9:101614040-101614120 7.4e-05 64_[+1]_8 chr19:35656191-35656271 7.4e-05 50_[+1]_22 chr1:100001134-100001214 7.4e-05 52_[+1]_20 chr12:32174025-32174105 7.4e-05 57_[+1]_15 chr1:22118074-22118154 7.4e-05 39_[+1]_33 chr3:99495625-99495705 7.4e-05 45_[+1]_27 chr1:1070855-1070935 7.4e-05 58_[+1]_14 chr2:106084663-106084743 7.4e-05 16_[+1]_56 chr10:94589711-94589791 7.4e-05 46_[+1]_26 chr10:29101071-29101151 0.0001 49_[+1]_23 chr7:150019648-150019728 0.0001 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCHGGAA width=8 seqs=87 chr5:141826406-141826486 ( 62) TCCTGGAA 1 chr1:12717663-12717743 ( 42) TCCTGGAA 1 chr7:138043973-138044053 ( 44) TCCTGGAA 1 chr2:208663492-208663572 ( 51) TCCTGGAA 1 chr12:127392642-12739272 ( 59) TCCTGGAA 1 chr19:50878202-50878282 ( 25) TCCTGGAA 1 chr7:157100640-157100720 ( 67) TCCTGGAA 1 chr5:125849857-125849937 ( 55) TCCTGGAA 1 chr4:123828134-123828214 ( 33) TCCTGGAA 1 chrX:48539039-48539119 ( 67) TCCTGGAA 1 chr2:238872952-238873032 ( 46) TCCTGGAA 1 chr15:101137166-10113724 ( 30) TCCTGGAA 1 chr2:26980878-26980958 ( 32) TCCTGGAA 1 chr17:25902295-25902375 ( 35) TCCTGGAA 1 chr4:185260667-185260747 ( 48) TCCTGGAA 1 chr8:98775213-98775293 ( 50) TCCTGGAA 1 chr9:138313384-138313464 ( 32) TCCTGGAA 1 chr18:12904133-12904213 ( 28) TCCTGGAA 1 chrX:40430592-40430672 ( 45) TCCTGGAA 1 chr20:2506433-2506513 ( 46) TCCTGGAA 1 chr5:132308014-132308094 ( 59) TCCTGGAA 1 chr14:70163718-70163798 ( 63) TCCTGGAA 1 chr1:236515164-236515244 ( 28) TCCTGGAA 1 chr5:168008264-168008344 ( 64) TCCTGGAA 1 chr7:73574703-73574783 ( 56) TCCTGGAA 1 chr12:83590586-83590666 ( 15) TCCTGGAA 1 chr11:61872785-61872865 ( 33) TCCTGGAA 1 chr15:45876045-45876125 ( 39) TCCTGGAA 1 chr14:103893961-10389404 ( 27) TCCTGGAA 1 chr17:46902915-46902995 ( 54) TCCTGGAA 1 chr11:76622253-76622333 ( 67) TCCTGGAA 1 chr6:15896078-15896158 ( 47) TCCTGGAA 1 chr7:130756966-130757046 ( 47) TCCTGGAA 1 chr2:88927166-88927246 ( 62) TCCCGGAA 1 chr20:23331245-23331325 ( 60) TCCCGGAA 1 chr1:9834928-9835008 ( 45) TCCCGGAA 1 chr2:208637347-208637427 ( 61) TCCCGGAA 1 chr9:117319490-117319570 ( 34) TCCCGGAA 1 chr1:159047049-159047129 ( 67) TCCCGGAA 1 chr22:29548971-29549051 ( 48) TCCCGGAA 1 chr16:20956634-20956714 ( 55) TCCCGGAA 1 chr2:9309540-9309620 ( 44) TCCCGGAA 1 chr3:45103661-45103741 ( 47) TCCCGGAA 1 chr6:2980528-2980608 ( 51) TCCCGGAA 1 chr1:110406925-110407005 ( 46) TCCCGGAA 1 chr17:60711471-60711551 ( 32) TCCCGGAA 1 chr7:12787544-12787624 ( 19) TCCCGGAA 1 chr11:118583485-11858356 ( 53) TCCCGGAA 1 chr17:26235420-26235500 ( 66) TCCAGGAA 1 chr11:61407717-61407797 ( 37) TCCAGGAA 1 chr5:180603379-180603459 ( 28) TCCAGGAA 1 chr11:75401450-75401530 ( 56) TCCAGGAA 1 chr8:91592739-91592819 ( 64) TCCAGGAA 1 chr11:35364915-35364995 ( 57) TCCAGGAA 1 chr10:48402562-48402642 ( 31) TCCAGGAA 1 chr3:40393762-40393842 ( 6) TCCAGGAA 1 chr2:47525391-47525471 ( 34) TCCAGGAA 1 chr10:70570299-70570379 ( 52) TCCAGGAA 1 chr6:147208413-147208493 ( 12) TCCAGGAA 1 chr11:277586-277666 ( 15) TCCAGGAA 1 chr1:23923792-23923872 ( 29) TCCAGGAA 1 chr7:32720586-32720666 ( 28) TCCAGGAA 1 chr17:74597819-74597899 ( 40) TCCAGGAA 1 chr6:110939213-110939293 ( 42) TCCAGGAA 1 chr11:44552072-44552152 ( 59) TCCAGGAA 1 chr8:41316022-41316102 ( 29) TCCAGGAA 1 chr10:45906433-45906513 ( 64) TCCAGGAA 1 chr7:32674711-32674791 ( 37) TCCTAGAA 1 chr9:115308591-115308671 ( 47) TCCTAGAA 1 chr8:68279265-68279345 ( 20) TCCCAGAA 1 chr3:12824099-12824179 ( 38) TCCCAGAA 1 chr6:32143925-32144005 ( 29) TCCCAGAA 1 chr2:97587929-97588009 ( 46) TCCCAGAA 1 chr6:151550607-151550687 ( 20) TCCCAGAA 1 chr4:68587573-68587653 ( 65) TCCCAGAA 1 chr12:107504010-10750409 ( 48) TCCCAGAA 1 chr9:101614040-101614120 ( 65) TCCCAGAA 1 chr19:35656191-35656271 ( 51) TCCCAGAA 1 chr1:100001134-100001214 ( 53) TCCCAGAA 1 chr12:32174025-32174105 ( 58) TCCCAGAA 1 chr1:22118074-22118154 ( 40) TCCCAGAA 1 chr3:99495625-99495705 ( 46) TCCCAGAA 1 chr1:1070855-1070935 ( 59) TCCCAGAA 1 chr2:106084663-106084743 ( 17) TCCCAGAA 1 chr10:94589711-94589791 ( 47) TCCCAGAA 1 chr10:29101071-29101151 ( 50) TCCGGGAA 1 chr7:150019648-150019728 ( 14) TCCGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.72594 E= 6.0e-107 -1309 -1309 -1309 208 -1309 191 -1309 -1309 -1309 191 -1309 -1309 -7 42 -354 77 -15 -1309 157 -1309 -1309 -1309 190 -1309 212 -1309 -1309 -1309 212 -1309 -1309 -1309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 6.0e-107 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.218391 0.356322 0.022989 0.402299 0.206897 0.000000 0.793103 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCHGGAA MEME-1 regular expression -------------------------------------------------------------------------------- TCC[TCA][GA]GAA -------------------------------------------------------------------------------- Time 4.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TCATGART MEME-2 width = 8 sites = 72 llr = 676 E-value = 4.0e-078 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCATGART MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::a5: pos.-specific C :9:::::: probability G ::::9:5: matrix T a::9:::a bits 2.1 * * 1.9 * * * * 1.7 * ** * * 1.5 **** * * Relative 1.3 ****** * Entropy 1.1 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCATGAGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATGART MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:138043973-138044053 55 1.15e-05 cctggaaaaa tcatgaat aattcactcc chr2:208663492-208663572 62 1.15e-05 cctggaaacc tcatgaat aatctacccc chr19:50878202-50878282 36 1.15e-05 cctggaaaac tcatgaat aatccacccg chr2:208637347-208637427 71 1.15e-05 tcccggaaac tcatgaat aa chr12:107504010-10750409 59 1.15e-05 cccagaaaac tcatgaat aatccaccct chr11:61407717-61407797 69 1.15e-05 ctgggaaaac tcatgaat aact chr11:75401450-75401530 67 1.15e-05 ccaggaattt tcatgaat attcca chr4:123828134-123828214 44 1.15e-05 cctggaaaac tcatgaat aagccaacac chr11:35364915-35364995 68 1.15e-05 ccaggaacct tcatgaat attcc chr3:40393762-40393842 38 1.15e-05 cctgtaaaac tcatgaat aatccacccc chr2:47525391-47525471 66 1.15e-05 cttggaaaat tcatgaat actccac chr16:20956634-20956714 66 1.15e-05 cccggaaaac tcatgaat aatccac chr1:23923792-23923872 61 1.15e-05 cccagaaaac tcatgaat aatccatccc chr7:32720586-32720666 60 1.15e-05 cccagaaaac tcatgaat aatccacctc chr8:98775213-98775293 61 1.15e-05 cctggaaaac tcatgaat aatccacccc chr3:45103661-45103741 57 1.15e-05 tcccggaaag tcatgaat aatccatccc chr9:138313384-138313464 43 1.15e-05 cctggaaaac tcatgaat aactcacctc chr6:110939213-110939293 53 1.15e-05 ccaggaattt tcatgaat attccaccct chr7:150019648-150019728 45 1.15e-05 tctctgaaac tcatgaat aattcaaccc chr6:2980528-2980608 62 1.15e-05 cccggaaaac tcatgaat aatgcactcc chr5:132308014-132308094 70 1.15e-05 cctggaaaac tcatgaat aat chr7:73574703-73574783 67 1.15e-05 cctggaaaac tcatgaat aatcca chr11:61872785-61872865 44 1.15e-05 cctggaaaat tcatgaat aagccaccct chr8:41316022-41316102 61 1.15e-05 cctgggaaac tcatgaat aatccacccc chr2:106084663-106084743 28 1.15e-05 cccagaaaac tcatgaat aatccacccc chr10:94589711-94589791 58 1.15e-05 cccagaaatc tcatgaat aatccacccc chr7:130756966-130757046 58 1.15e-05 cctggaaaac tcatgaat aatccacccc chr5:141826406-141826486 30 2.49e-05 ggtggattat tcatgagt tttctgggaa chr1:9834928-9835008 14 2.49e-05 ggtggattat tcatgagt tttcccggaa chr12:127392642-12739272 28 2.49e-05 tgtggatcat tcatgagt tttccaggaa chr9:101614040-101614120 34 2.49e-05 agtggatgat tcatgagt tttctgagaa chr7:157100640-157100720 36 2.49e-05 ggtggattat tcatgagt tttcttcaaa chr5:125849857-125849937 24 2.49e-05 ggtggattat tcatgagt tttcaggaaa chr9:117319490-117319570 3 2.49e-05 at tcatgagt tttccaggaa chr19:35656191-35656271 20 2.49e-05 ggtggattat tcatgagt tttctgggaa chr22:29548971-29549051 17 2.49e-05 gatggattat tcatgagt tttctgggaa chr12:32174025-32174105 27 2.49e-05 agtggattat tcatgagt tttctgggaa chr11:277586-277666 5 2.49e-05 ttat tcatgagt tttccaggaa chr2:9309540-9309620 13 2.49e-05 ggtggattat tcatgagt tttccaggaa chr1:22118074-22118154 9 2.49e-05 tggattat tcatgagt tttccgagaa chr3:99495625-99495705 15 2.49e-05 aggggtggat tcatgagt tttctgggaa chr4:185260667-185260747 17 2.49e-05 ggtgacttat tcatgagt tttctaggaa chrX:40430592-40430672 14 2.49e-05 ggtggattat tcatgagt tttccgggaa chr11:44552072-44552152 28 2.49e-05 ggtgtattac tcatgagt tttctgggta chr17:60711471-60711551 1 2.49e-05 . tcatgagt tttctgggaa chr7:12787544-12787624 9 2.49e-05 tggattat tcatgagt tttcccggaa chr15:45876045-45876125 8 2.49e-05 ggattat tcatgagt gttccgggaa chr10:45906433-45906513 33 2.49e-05 agtggattat tcatgagt tttccaggag chr17:46902915-46902995 23 2.49e-05 ggtggataat tcatgagt tttctaggaa chrX:109244159-109244239 20 2.49e-05 ggtggattat tcatgagt tttctgggaa chr11:118583485-11858356 22 2.49e-05 aatagattat tcatgagt tttcggggaa chr6:15896078-15896158 16 2.49e-05 ggcagattat tcatgagt tttctgggaa chr9:115308591-115308671 58 3.51e-05 cctagaaaac ttatgaat aattcacccc chr1:12717663-12717743 32 5.82e-05 ggcggaatat tcatgaaa attcctggaa chr1:110406925-110407005 15 5.82e-05 ggtggattat ttatgagt tttctaggaa chr12:83590586-83590666 5 5.82e-05 atat tcatgaaa attcctggaa chr11:76622253-76622333 36 5.82e-05 agtgagttat ttatgagt tttccaggaa chr18:12904133-12904213 39 8.40e-05 cctggaaaac tcacgaat aatccattcc chr1:236515164-236515244 18 8.40e-05 ggctgaatat tcatgaga attcctggaa chr2:44395511-44395591 34 9.90e-05 GGGGTTCGGA TCACGAGT TGGACCAATA chr10:70570299-70570379 21 9.90e-05 ggtgaattat tcacgagt tttccaggaa chr10:29101071-29101151 61 1.19e-04 ccgggaaaac tcattaat tatctactcc chr1:27354620-27354700 27 1.19e-04 ccagtaactt tcataaat attccacccc chr3:129418241-129418321 72 1.54e-04 ctcagaaaac tcattagt a chr6:147208413-147208493 2 1.54e-04 t tcataagt tttccaggaa chr2:88927166-88927246 54 1.92e-04 ATTGGTGCGC TCATCAGT TCCCGGAATA chr5:180603379-180603459 18 1.92e-04 ggtggattat tcatcagt tttccaggaa chr9:115308796-115308876 62 1.92e-04 gtctgctggc tcttgaat tccttcctgt chr1:100001134-100001214 22 2.21e-04 ggtgggttat tcaggagt tttctgggaa chr5:32313307-32313387 5 2.21e-04 CCAT TCTTGAGT GCACTTGGAG chr20:2506433-2506513 15 2.21e-04 ggtggattat tcaggagt tttccaggaa chr8:68279265-68279345 31 2.32e-04 cccagaaaac tgatgaat aatccacccg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATGART MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:138043973-138044053 1.2e-05 54_[+2]_18 chr2:208663492-208663572 1.2e-05 61_[+2]_11 chr19:50878202-50878282 1.2e-05 35_[+2]_37 chr2:208637347-208637427 1.2e-05 70_[+2]_2 chr12:107504010-10750409 1.2e-05 58_[+2]_14 chr11:61407717-61407797 1.2e-05 68_[+2]_4 chr11:75401450-75401530 1.2e-05 66_[+2]_6 chr4:123828134-123828214 1.2e-05 43_[+2]_29 chr11:35364915-35364995 1.2e-05 67_[+2]_5 chr3:40393762-40393842 1.2e-05 37_[+2]_35 chr2:47525391-47525471 1.2e-05 65_[+2]_7 chr16:20956634-20956714 1.2e-05 65_[+2]_7 chr1:23923792-23923872 1.2e-05 60_[+2]_12 chr7:32720586-32720666 1.2e-05 59_[+2]_13 chr8:98775213-98775293 1.2e-05 60_[+2]_12 chr3:45103661-45103741 1.2e-05 56_[+2]_16 chr9:138313384-138313464 1.2e-05 42_[+2]_30 chr6:110939213-110939293 1.2e-05 52_[+2]_20 chr7:150019648-150019728 1.2e-05 44_[+2]_28 chr6:2980528-2980608 1.2e-05 61_[+2]_11 chr5:132308014-132308094 1.2e-05 69_[+2]_3 chr7:73574703-73574783 1.2e-05 66_[+2]_6 chr11:61872785-61872865 1.2e-05 43_[+2]_29 chr8:41316022-41316102 1.2e-05 60_[+2]_12 chr2:106084663-106084743 1.2e-05 27_[+2]_45 chr10:94589711-94589791 1.2e-05 57_[+2]_15 chr7:130756966-130757046 1.2e-05 57_[+2]_15 chr5:141826406-141826486 2.5e-05 29_[+2]_43 chr1:9834928-9835008 2.5e-05 13_[+2]_59 chr12:127392642-12739272 2.5e-05 27_[+2]_45 chr9:101614040-101614120 2.5e-05 33_[+2]_39 chr7:157100640-157100720 2.5e-05 35_[+2]_37 chr5:125849857-125849937 2.5e-05 23_[+2]_49 chr9:117319490-117319570 2.5e-05 2_[+2]_70 chr19:35656191-35656271 2.5e-05 19_[+2]_53 chr22:29548971-29549051 2.5e-05 16_[+2]_56 chr12:32174025-32174105 2.5e-05 26_[+2]_46 chr11:277586-277666 2.5e-05 4_[+2]_68 chr2:9309540-9309620 2.5e-05 12_[+2]_60 chr1:22118074-22118154 2.5e-05 8_[+2]_64 chr3:99495625-99495705 2.5e-05 14_[+2]_58 chr4:185260667-185260747 2.5e-05 16_[+2]_56 chrX:40430592-40430672 2.5e-05 13_[+2]_59 chr11:44552072-44552152 2.5e-05 27_[+2]_45 chr17:60711471-60711551 2.5e-05 [+2]_72 chr7:12787544-12787624 2.5e-05 8_[+2]_64 chr15:45876045-45876125 2.5e-05 7_[+2]_65 chr10:45906433-45906513 2.5e-05 32_[+2]_40 chr17:46902915-46902995 2.5e-05 22_[+2]_50 chrX:109244159-109244239 2.5e-05 19_[+2]_53 chr11:118583485-11858356 2.5e-05 21_[+2]_51 chr6:15896078-15896158 2.5e-05 15_[+2]_57 chr9:115308591-115308671 3.5e-05 57_[+2]_15 chr1:12717663-12717743 5.8e-05 31_[+2]_41 chr1:110406925-110407005 5.8e-05 14_[+2]_58 chr12:83590586-83590666 5.8e-05 4_[+2]_68 chr11:76622253-76622333 5.8e-05 35_[+2]_37 chr18:12904133-12904213 8.4e-05 38_[+2]_34 chr1:236515164-236515244 8.4e-05 17_[+2]_55 chr2:44395511-44395591 9.9e-05 33_[+2]_39 chr10:70570299-70570379 9.9e-05 20_[+2]_52 chr10:29101071-29101151 0.00012 60_[+2]_12 chr1:27354620-27354700 0.00012 26_[+2]_46 chr3:129418241-129418321 0.00015 71_[+2]_1 chr6:147208413-147208493 0.00015 1_[+2]_71 chr2:88927166-88927246 0.00019 53_[+2]_19 chr5:180603379-180603459 0.00019 17_[+2]_55 chr9:115308796-115308876 0.00019 61_[+2]_11 chr1:100001134-100001214 0.00022 21_[+2]_51 chr5:32313307-32313387 0.00022 4_[+2]_68 chr20:2506433-2506513 0.00022 14_[+2]_58 chr8:68279265-68279345 0.00023 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATGART MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCATGART width=8 seqs=72 chr7:138043973-138044053 ( 55) TCATGAAT 1 chr2:208663492-208663572 ( 62) TCATGAAT 1 chr19:50878202-50878282 ( 36) TCATGAAT 1 chr2:208637347-208637427 ( 71) TCATGAAT 1 chr12:107504010-10750409 ( 59) TCATGAAT 1 chr11:61407717-61407797 ( 69) TCATGAAT 1 chr11:75401450-75401530 ( 67) TCATGAAT 1 chr4:123828134-123828214 ( 44) TCATGAAT 1 chr11:35364915-35364995 ( 68) TCATGAAT 1 chr3:40393762-40393842 ( 38) TCATGAAT 1 chr2:47525391-47525471 ( 66) TCATGAAT 1 chr16:20956634-20956714 ( 66) TCATGAAT 1 chr1:23923792-23923872 ( 61) TCATGAAT 1 chr7:32720586-32720666 ( 60) TCATGAAT 1 chr8:98775213-98775293 ( 61) TCATGAAT 1 chr3:45103661-45103741 ( 57) TCATGAAT 1 chr9:138313384-138313464 ( 43) TCATGAAT 1 chr6:110939213-110939293 ( 53) TCATGAAT 1 chr7:150019648-150019728 ( 45) TCATGAAT 1 chr6:2980528-2980608 ( 62) TCATGAAT 1 chr5:132308014-132308094 ( 70) TCATGAAT 1 chr7:73574703-73574783 ( 67) TCATGAAT 1 chr11:61872785-61872865 ( 44) TCATGAAT 1 chr8:41316022-41316102 ( 61) TCATGAAT 1 chr2:106084663-106084743 ( 28) TCATGAAT 1 chr10:94589711-94589791 ( 58) TCATGAAT 1 chr7:130756966-130757046 ( 58) TCATGAAT 1 chr5:141826406-141826486 ( 30) TCATGAGT 1 chr1:9834928-9835008 ( 14) TCATGAGT 1 chr12:127392642-12739272 ( 28) TCATGAGT 1 chr9:101614040-101614120 ( 34) TCATGAGT 1 chr7:157100640-157100720 ( 36) TCATGAGT 1 chr5:125849857-125849937 ( 24) TCATGAGT 1 chr9:117319490-117319570 ( 3) TCATGAGT 1 chr19:35656191-35656271 ( 20) TCATGAGT 1 chr22:29548971-29549051 ( 17) TCATGAGT 1 chr12:32174025-32174105 ( 27) TCATGAGT 1 chr11:277586-277666 ( 5) TCATGAGT 1 chr2:9309540-9309620 ( 13) TCATGAGT 1 chr1:22118074-22118154 ( 9) TCATGAGT 1 chr3:99495625-99495705 ( 15) TCATGAGT 1 chr4:185260667-185260747 ( 17) TCATGAGT 1 chrX:40430592-40430672 ( 14) TCATGAGT 1 chr11:44552072-44552152 ( 28) TCATGAGT 1 chr17:60711471-60711551 ( 1) TCATGAGT 1 chr7:12787544-12787624 ( 9) TCATGAGT 1 chr15:45876045-45876125 ( 8) TCATGAGT 1 chr10:45906433-45906513 ( 33) TCATGAGT 1 chr17:46902915-46902995 ( 23) TCATGAGT 1 chrX:109244159-109244239 ( 20) TCATGAGT 1 chr11:118583485-11858356 ( 22) TCATGAGT 1 chr6:15896078-15896158 ( 16) TCATGAGT 1 chr9:115308591-115308671 ( 58) TTATGAAT 1 chr1:12717663-12717743 ( 32) TCATGAAA 1 chr1:110406925-110407005 ( 15) TTATGAGT 1 chr12:83590586-83590666 ( 5) TCATGAAA 1 chr11:76622253-76622333 ( 36) TTATGAGT 1 chr18:12904133-12904213 ( 39) TCACGAAT 1 chr1:236515164-236515244 ( 18) TCATGAGA 1 chr2:44395511-44395591 ( 34) TCACGAGT 1 chr10:70570299-70570379 ( 21) TCACGAGT 1 chr10:29101071-29101151 ( 61) TCATTAAT 1 chr1:27354620-27354700 ( 27) TCATAAAT 1 chr3:129418241-129418321 ( 72) TCATTAGT 1 chr6:147208413-147208493 ( 2) TCATAAGT 1 chr2:88927166-88927246 ( 54) TCATCAGT 1 chr5:180603379-180603459 ( 18) TCATCAGT 1 chr9:115308796-115308876 ( 62) TCTTGAAT 1 chr1:100001134-100001214 ( 22) TCAGGAGT 1 chr5:32313307-32313387 ( 5) TCTTGAGT 1 chr20:2506433-2506513 ( 15) TCAGGAGT 1 chr8:68279265-68279345 ( 31) TGATGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATGART MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.11479 E= 4.0e-078 -1281 -1281 -1281 208 -1281 183 -426 -250 208 -1281 -1281 -309 -1281 -268 -326 198 -305 -326 178 -309 212 -1281 -1281 -1281 108 -1281 94 -1281 -246 -1281 -1281 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATGART MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 4.0e-078 0.000000 0.000000 0.000000 1.000000 0.000000 0.944444 0.013889 0.041667 0.972222 0.000000 0.000000 0.027778 0.000000 0.041667 0.027778 0.930556 0.027778 0.027778 0.916667 0.027778 1.000000 0.000000 0.000000 0.000000 0.486111 0.000000 0.513889 0.000000 0.041667 0.000000 0.000000 0.958333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATGART MEME-2 regular expression -------------------------------------------------------------------------------- TCATGA[GA]T -------------------------------------------------------------------------------- Time 7.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCYGGGA MEME-3 width = 8 sites = 87 llr = 725 E-value = 1.3e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::22:a pos.-specific C ::a41::: probability G ::::68a: matrix T aa:61::: bits 2.1 * 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** *** Entropy 1.1 *** *** (12.0 bits) 0.8 *** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTGGGA consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:141826406-141826486 39 1.55e-05 ttcatgagtt ttctggga aaggggttgg chr3:12824099-12824179 16 1.55e-05 ttcacaaact ttctggga aaggggcggg chr2:97587929-97588009 24 1.55e-05 gaaccctcag ttctggga attgcccacc chr7:138043973-138044053 22 1.55e-05 gaaccgtcag ttctggga aatccccacc chr20:23331245-23331325 43 1.55e-05 TTGCCGGGAT TTCTGGGA AAGTGACACT chr4:68587573-68587653 43 1.55e-05 tttagcagtt ttctggga aaggagtggg chr12:107504010-10750409 26 1.55e-05 gaaccctcag ttctggga attgtccacc chr17:26235420-26235500 44 1.55e-05 gaagcctcag ttctggga attgcccacc chr11:61407717-61407797 57 1.55e-05 gcccacccct ttctggga aaactcatga chr1:159047049-159047129 45 1.55e-05 gggaggggtt ttctggga aatgggcggg chr19:35656191-35656271 29 1.55e-05 ttcatgagtt ttctggga aaggggtggg chr1:100001134-100001214 31 1.55e-05 ttcaggagtt ttctggga aaggggtggg chr22:29548971-29549051 26 1.55e-05 ttcatgagtt ttctggga aaggggtggg chr12:32174025-32174105 36 1.55e-05 ttcatgagtt ttctggga aaggggtggg chr15:101137166-10113724 8 1.55e-05 gccctga ttctggga actgcccacc chr3:99495625-99495705 24 1.55e-05 ttcatgagtt ttctggga aaggggtagg chr17:25902295-25902375 13 1.55e-05 tttgtgaatt ttctggga aaggggcagg chr10:29101071-29101151 28 1.55e-05 gagccctcag ttctggga attgcccacc chr6:2980528-2980608 29 1.55e-05 gaaccctcag ttctggga gttgtccacc chr5:132308014-132308094 37 1.55e-05 gaatgcttag ttctggga aatccctgcc chr1:1070855-1070935 37 1.55e-05 ttccggactt ttctggga aaggggcagg chr5:168008264-168008344 42 1.55e-05 gaaccctcag ttctggga attgtccgcc chr17:60711471-60711551 10 1.55e-05 tcatgagtt ttctggga aaggggtggg chr11:61872785-61872865 11 1.55e-05 gaactctcat ttctggga attctctgac chr14:103893961-10389404 5 1.55e-05 agct ttctggga aaagggcaga chr10:94589711-94589791 25 1.55e-05 gaaccctcaa ttctggga atcacccacc chrX:109244159-109244239 29 1.55e-05 ttcatgagtt ttctggga aaggggtggg chr6:15896078-15896158 25 1.55e-05 ttcatgagtt ttctggga aaggagtggt chr2:208637347-208637427 39 3.29e-05 gaaccctcag ttccggga attgcccgcc chr4:123828134-123828214 11 3.29e-05 gaaccctcag ttccggga attgcctgcc chr1:38397515-38397595 51 3.29e-05 CCACCGTTTC TTCCGGGA CGGATACCTG chr18:12904133-12904213 6 3.29e-05 ctcag ttccggga actgcccgcc chrX:40430592-40430672 23 3.29e-05 ttcatgagtt ttccggga aagaggtggg chr7:73574703-73574783 34 3.29e-05 gaaccgtcag ttccggga attgcctacc chr15:45876045-45876125 17 3.29e-05 ttcatgagtg ttccggga aaggggtggg chr7:130756966-130757046 25 3.29e-05 gaactctcag ttccggga aatctccacc chr7:32945034-32945114 32 4.63e-05 atgcagacgt ttctagga aaacaacccc chr4:185260667-185260747 26 4.63e-05 ttcatgagtt ttctagga aagaggtggg chr1:110406925-110407005 24 4.63e-05 tttatgagtt ttctagga aaggggtgga chr17:46902915-46902995 32 4.63e-05 ttcatgagtt ttctagga aaggggtggg chr19:50878202-50878282 3 5.96e-05 aa ttctgaga attgcctacc chr9:101614040-101614120 43 5.96e-05 ttcatgagtt ttctgaga aaggggcgag chr11:75401450-75401530 34 5.96e-05 ggcactacaa ttctgaga aatcttcacc chr11:35364915-35364995 35 5.96e-05 ggcaccacag ttctgaga aatcttcacc chr2:208663492-208663572 29 7.46e-05 gaaccctcag ttccagga attgcccacc chr12:127392642-12739272 37 7.46e-05 ttcatgagtt ttccagga aaggtgtggg chr9:117319490-117319570 12 7.46e-05 ttcatgagtt ttccagga aaggggtggg chr10:70570299-70570379 30 7.46e-05 ttcacgagtt ttccagga aaggggcaag chr2:238872952-238873032 24 7.46e-05 ttcgtgagtt ttccagga aaaggctggg chr2:9309540-9309620 22 7.46e-05 ttcatgagtt ttccagga aaaggatggg chr2:26980878-26980958 10 7.46e-05 tcatgaact ttccagga aaggggcggg chr8:98775213-98775293 28 7.46e-05 gaaccttcgg ttccagga attgtccacc chr20:2506433-2506513 24 7.46e-05 ttcaggagtt ttccagga aaggggtggg chr14:70163718-70163798 42 7.46e-05 ttcattagat ttccagga aaggggtggg chr10:45906433-45906513 42 7.46e-05 ttcatgagtt ttccagga gaggggtggg chr11:76622253-76622333 45 7.46e-05 tttatgagtt ttccagga aaggggcggg chr8:91592739-91592819 42 1.05e-04 ggtactacag ttccgaga aatcttaaag chr1:22118074-22118154 18 1.05e-04 ttcatgagtt ttccgaga aagggatggg chr1:236515164-236515244 48 1.05e-04 aggtggaggt ttctcgga actgtggtgc chr8:27697279-27697359 51 1.19e-04 agatggagat ttcttgga actgtggtgc chr2:47525391-47525471 54 1.19e-04 gcccacctct ttcttgga aaattcatga chr16:20956634-20956714 33 1.19e-04 gaaccctcac ttcttgga attgcccacc chr12:83590586-83590666 35 1.19e-04 aggtacagat ttcttgga actgtaacac chr1:9834928-9835008 23 1.48e-04 ttcatgagtt ttcccgga aagatatggg chrX:48539039-48539119 45 1.48e-04 gaaccttcag ttcccgga attgcccacc chr2:62932643-62932723 27 1.81e-04 GCATTCCGGC TTCGGGGA AAAACCACCT chr11:118583485-11858356 31 1.81e-04 ttcatgagtt ttcgggga aaggggtggg chr3:129418241-129418321 39 2.08e-04 gaaccttgag ttcaggga attgcccacc chr9:138313384-138313464 10 2.08e-04 aaccctcag ttcaggga aatctccacc chr19:45394320-45394400 50 2.08e-04 AAAAGGACAT TTCAGGGA AAGTGGGCGG chr6:110939213-110939293 20 2.08e-04 ggcaccacag ttccaaga aatctccccc chr9:115308591-115308671 25 2.08e-04 gaaccctcag ttccaaga attccctgcc chr1:12717663-12717743 62 2.22e-04 tggcggagtt ttctcaga actgtggtgg chr10:48402562-48402642 10 2.22e-04 GCACTTGAA TTCTCAGA ACTCCAAGTA chr11:277586-277666 35 2.22e-04 tggtgggcaa ttctcaga actgagggtt chr5:180603379-180603459 48 2.34e-04 gggtgggcaa ttcttaga actgggggtt chr1:6845250-6845330 45 2.51e-04 AGGCGGGCTT TCCTGGGA GTGGGTGGGG chr8:41316022-41316102 50 2.51e-04 ccctcccctt tcctggga aactcatgaa chr1:23923792-23923872 49 2.81e-04 gcccacccct ttcccaga aaactcatga chr7:32720586-32720666 48 2.81e-04 cccctccctg ttcccaga aaactcatga chr7:12787544-12787624 39 2.81e-04 acgtgggcaa ttcccaga actaagagtt chr7:32674711-32674791 7 3.07e-04 ACATTT TTCCTAGA AAATGCTTTA chr19:6425257-6425337 45 3.23e-04 TCCTGACGAG TTCTGGGT GATGAGGTTG chr11:44552072-44552152 37 3.23e-04 ctcatgagtt ttctgggt aaagggcaga chr19:42901174-42901254 70 3.38e-04 GCGATAGGCT TTCGGAGA CGC chr17:79196835-79196915 30 3.71e-04 GCTCAGGCCG TCCCGGGA GCTCATTGGG chr11:63953423-63953503 5 4.52e-04 TCCA TTCGTGGA GCCTGAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:141826406-141826486 1.6e-05 38_[+3]_34 chr3:12824099-12824179 1.6e-05 15_[+3]_57 chr2:97587929-97588009 1.6e-05 23_[+3]_49 chr7:138043973-138044053 1.6e-05 21_[+3]_51 chr20:23331245-23331325 1.6e-05 42_[+3]_30 chr4:68587573-68587653 1.6e-05 42_[+3]_30 chr12:107504010-10750409 1.6e-05 25_[+3]_47 chr17:26235420-26235500 1.6e-05 43_[+3]_29 chr11:61407717-61407797 1.6e-05 56_[+3]_16 chr1:159047049-159047129 1.6e-05 44_[+3]_28 chr19:35656191-35656271 1.6e-05 28_[+3]_44 chr1:100001134-100001214 1.6e-05 30_[+3]_42 chr22:29548971-29549051 1.6e-05 25_[+3]_47 chr12:32174025-32174105 1.6e-05 35_[+3]_37 chr15:101137166-10113724 1.6e-05 7_[+3]_65 chr3:99495625-99495705 1.6e-05 23_[+3]_49 chr17:25902295-25902375 1.6e-05 12_[+3]_60 chr10:29101071-29101151 1.6e-05 27_[+3]_45 chr6:2980528-2980608 1.6e-05 28_[+3]_44 chr5:132308014-132308094 1.6e-05 36_[+3]_36 chr1:1070855-1070935 1.6e-05 36_[+3]_36 chr5:168008264-168008344 1.6e-05 41_[+3]_31 chr17:60711471-60711551 1.6e-05 9_[+3]_63 chr11:61872785-61872865 1.6e-05 10_[+3]_62 chr14:103893961-10389404 1.6e-05 4_[+3]_68 chr10:94589711-94589791 1.6e-05 24_[+3]_48 chrX:109244159-109244239 1.6e-05 28_[+3]_44 chr6:15896078-15896158 1.6e-05 24_[+3]_48 chr2:208637347-208637427 3.3e-05 38_[+3]_34 chr4:123828134-123828214 3.3e-05 10_[+3]_62 chr1:38397515-38397595 3.3e-05 50_[+3]_22 chr18:12904133-12904213 3.3e-05 5_[+3]_67 chrX:40430592-40430672 3.3e-05 22_[+3]_50 chr7:73574703-73574783 3.3e-05 33_[+3]_39 chr15:45876045-45876125 3.3e-05 16_[+3]_56 chr7:130756966-130757046 3.3e-05 24_[+3]_48 chr7:32945034-32945114 4.6e-05 31_[+3]_41 chr4:185260667-185260747 4.6e-05 25_[+3]_47 chr1:110406925-110407005 4.6e-05 23_[+3]_49 chr17:46902915-46902995 4.6e-05 31_[+3]_41 chr19:50878202-50878282 6e-05 2_[+3]_70 chr9:101614040-101614120 6e-05 42_[+3]_30 chr11:75401450-75401530 6e-05 33_[+3]_39 chr11:35364915-35364995 6e-05 34_[+3]_38 chr2:208663492-208663572 7.5e-05 28_[+3]_44 chr12:127392642-12739272 7.5e-05 36_[+3]_36 chr9:117319490-117319570 7.5e-05 11_[+3]_61 chr10:70570299-70570379 7.5e-05 29_[+3]_43 chr2:238872952-238873032 7.5e-05 23_[+3]_49 chr2:9309540-9309620 7.5e-05 21_[+3]_51 chr2:26980878-26980958 7.5e-05 9_[+3]_63 chr8:98775213-98775293 7.5e-05 27_[+3]_45 chr20:2506433-2506513 7.5e-05 23_[+3]_49 chr14:70163718-70163798 7.5e-05 41_[+3]_31 chr10:45906433-45906513 7.5e-05 41_[+3]_31 chr11:76622253-76622333 7.5e-05 44_[+3]_28 chr8:91592739-91592819 0.00011 41_[+3]_31 chr1:22118074-22118154 0.00011 17_[+3]_55 chr1:236515164-236515244 0.00011 47_[+3]_25 chr8:27697279-27697359 0.00012 50_[+3]_22 chr2:47525391-47525471 0.00012 53_[+3]_19 chr16:20956634-20956714 0.00012 32_[+3]_40 chr12:83590586-83590666 0.00012 34_[+3]_38 chr1:9834928-9835008 0.00015 22_[+3]_50 chrX:48539039-48539119 0.00015 44_[+3]_28 chr2:62932643-62932723 0.00018 26_[+3]_46 chr11:118583485-11858356 0.00018 30_[+3]_42 chr3:129418241-129418321 0.00021 38_[+3]_34 chr9:138313384-138313464 0.00021 9_[+3]_63 chr19:45394320-45394400 0.00021 49_[+3]_23 chr6:110939213-110939293 0.00021 19_[+3]_53 chr9:115308591-115308671 0.00021 24_[+3]_48 chr1:12717663-12717743 0.00022 61_[+3]_11 chr10:48402562-48402642 0.00022 9_[+3]_63 chr11:277586-277666 0.00022 34_[+3]_38 chr5:180603379-180603459 0.00023 47_[+3]_25 chr1:6845250-6845330 0.00025 44_[+3]_28 chr8:41316022-41316102 0.00025 49_[+3]_23 chr1:23923792-23923872 0.00028 48_[+3]_24 chr7:32720586-32720666 0.00028 47_[+3]_25 chr7:12787544-12787624 0.00028 38_[+3]_34 chr7:32674711-32674791 0.00031 6_[+3]_66 chr19:6425257-6425337 0.00032 44_[+3]_28 chr11:44552072-44552152 0.00032 36_[+3]_36 chr19:42901174-42901254 0.00034 69_[+3]_3 chr17:79196835-79196915 0.00037 29_[+3]_43 chr11:63953423-63953503 0.00045 4_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCYGGGA width=8 seqs=87 chr5:141826406-141826486 ( 39) TTCTGGGA 1 chr3:12824099-12824179 ( 16) TTCTGGGA 1 chr2:97587929-97588009 ( 24) TTCTGGGA 1 chr7:138043973-138044053 ( 22) TTCTGGGA 1 chr20:23331245-23331325 ( 43) TTCTGGGA 1 chr4:68587573-68587653 ( 43) TTCTGGGA 1 chr12:107504010-10750409 ( 26) TTCTGGGA 1 chr17:26235420-26235500 ( 44) TTCTGGGA 1 chr11:61407717-61407797 ( 57) TTCTGGGA 1 chr1:159047049-159047129 ( 45) TTCTGGGA 1 chr19:35656191-35656271 ( 29) TTCTGGGA 1 chr1:100001134-100001214 ( 31) TTCTGGGA 1 chr22:29548971-29549051 ( 26) TTCTGGGA 1 chr12:32174025-32174105 ( 36) TTCTGGGA 1 chr15:101137166-10113724 ( 8) TTCTGGGA 1 chr3:99495625-99495705 ( 24) TTCTGGGA 1 chr17:25902295-25902375 ( 13) TTCTGGGA 1 chr10:29101071-29101151 ( 28) TTCTGGGA 1 chr6:2980528-2980608 ( 29) TTCTGGGA 1 chr5:132308014-132308094 ( 37) TTCTGGGA 1 chr1:1070855-1070935 ( 37) TTCTGGGA 1 chr5:168008264-168008344 ( 42) TTCTGGGA 1 chr17:60711471-60711551 ( 10) TTCTGGGA 1 chr11:61872785-61872865 ( 11) TTCTGGGA 1 chr14:103893961-10389404 ( 5) TTCTGGGA 1 chr10:94589711-94589791 ( 25) TTCTGGGA 1 chrX:109244159-109244239 ( 29) TTCTGGGA 1 chr6:15896078-15896158 ( 25) TTCTGGGA 1 chr2:208637347-208637427 ( 39) TTCCGGGA 1 chr4:123828134-123828214 ( 11) TTCCGGGA 1 chr1:38397515-38397595 ( 51) TTCCGGGA 1 chr18:12904133-12904213 ( 6) TTCCGGGA 1 chrX:40430592-40430672 ( 23) TTCCGGGA 1 chr7:73574703-73574783 ( 34) TTCCGGGA 1 chr15:45876045-45876125 ( 17) TTCCGGGA 1 chr7:130756966-130757046 ( 25) TTCCGGGA 1 chr7:32945034-32945114 ( 32) TTCTAGGA 1 chr4:185260667-185260747 ( 26) TTCTAGGA 1 chr1:110406925-110407005 ( 24) TTCTAGGA 1 chr17:46902915-46902995 ( 32) TTCTAGGA 1 chr19:50878202-50878282 ( 3) TTCTGAGA 1 chr9:101614040-101614120 ( 43) TTCTGAGA 1 chr11:75401450-75401530 ( 34) TTCTGAGA 1 chr11:35364915-35364995 ( 35) TTCTGAGA 1 chr2:208663492-208663572 ( 29) TTCCAGGA 1 chr12:127392642-12739272 ( 37) TTCCAGGA 1 chr9:117319490-117319570 ( 12) TTCCAGGA 1 chr10:70570299-70570379 ( 30) TTCCAGGA 1 chr2:238872952-238873032 ( 24) TTCCAGGA 1 chr2:9309540-9309620 ( 22) TTCCAGGA 1 chr2:26980878-26980958 ( 10) TTCCAGGA 1 chr8:98775213-98775293 ( 28) TTCCAGGA 1 chr20:2506433-2506513 ( 24) TTCCAGGA 1 chr14:70163718-70163798 ( 42) TTCCAGGA 1 chr10:45906433-45906513 ( 42) TTCCAGGA 1 chr11:76622253-76622333 ( 45) TTCCAGGA 1 chr8:91592739-91592819 ( 42) TTCCGAGA 1 chr1:22118074-22118154 ( 18) TTCCGAGA 1 chr1:236515164-236515244 ( 48) TTCTCGGA 1 chr8:27697279-27697359 ( 51) TTCTTGGA 1 chr2:47525391-47525471 ( 54) TTCTTGGA 1 chr16:20956634-20956714 ( 33) TTCTTGGA 1 chr12:83590586-83590666 ( 35) TTCTTGGA 1 chr1:9834928-9835008 ( 23) TTCCCGGA 1 chrX:48539039-48539119 ( 45) TTCCCGGA 1 chr2:62932643-62932723 ( 27) TTCGGGGA 1 chr11:118583485-11858356 ( 31) TTCGGGGA 1 chr3:129418241-129418321 ( 39) TTCAGGGA 1 chr9:138313384-138313464 ( 10) TTCAGGGA 1 chr19:45394320-45394400 ( 50) TTCAGGGA 1 chr6:110939213-110939293 ( 20) TTCCAAGA 1 chr9:115308591-115308671 ( 25) TTCCAAGA 1 chr1:12717663-12717743 ( 62) TTCTCAGA 1 chr10:48402562-48402642 ( 10) TTCTCAGA 1 chr11:277586-277666 ( 35) TTCTCAGA 1 chr5:180603379-180603459 ( 48) TTCTTAGA 1 chr1:6845250-6845330 ( 45) TCCTGGGA 1 chr8:41316022-41316102 ( 50) TCCTGGGA 1 chr1:23923792-23923872 ( 49) TTCCCAGA 1 chr7:32720586-32720666 ( 48) TTCCCAGA 1 chr7:12787544-12787624 ( 39) TTCCCAGA 1 chr7:32674711-32674791 ( 7) TTCCTAGA 1 chr19:6425257-6425337 ( 45) TTCTGGGT 1 chr11:44552072-44552152 ( 37) TTCTGGGT 1 chr19:42901174-42901254 ( 70) TTCGGAGA 1 chr17:79196835-79196915 ( 30) TCCCGGGA 1 chr11:63953423-63953503 ( 5) TTCGTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.72594 E= 1.3e-064 -1309 -1309 -1309 208 -1309 -295 -1309 203 -1309 191 -1309 -1309 -274 42 -254 125 -15 -136 119 -156 -23 -1309 159 -1309 -1309 -1309 190 -1309 209 -1309 -1309 -336 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 1.3e-064 0.000000 0.000000 0.000000 1.000000 0.000000 0.034483 0.000000 0.965517 0.000000 1.000000 0.000000 0.000000 0.034483 0.356322 0.045977 0.563218 0.206897 0.103448 0.609195 0.080460 0.195402 0.000000 0.804598 0.000000 0.000000 0.000000 1.000000 0.000000 0.977011 0.000000 0.000000 0.022989 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYGGGA MEME-3 regular expression -------------------------------------------------------------------------------- TTC[TC][GA]GGA -------------------------------------------------------------------------------- Time 11.06 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGHGG MEME-4 width = 8 sites = 116 llr = 860 E-value = 9.0e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 821::31: pos.-specific C :::::4:: probability G 279aa:9a matrix T :1:::4:: bits 2.1 1.9 * 1.7 ** * 1.5 ** ** Relative 1.3 * *** ** Entropy 1.1 * *** ** (10.7 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGGGCGG consensus G T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:157100640-157100720 23 1.97e-05 tgctaaacaa aggggtgg attattcatg chr8:27697279-27697359 8 1.97e-05 tcaacca aggggtgg aatatttatg chr5:125849857-125849937 42 1.97e-05 tttcaggaaa aggggtgg gcaattcctg chr9:117319490-117319570 21 1.97e-05 tttccaggaa aggggtgg gaaattcccg chr19:35656191-35656271 38 1.97e-05 tttctgggaa aggggtgg gcaattccca chr5:180603379-180603459 36 1.97e-05 tttccaggaa aggggtgg gcaattctta chr1:100001134-100001214 40 1.97e-05 tttctgggaa aggggtgg gcaattccca chr22:29548971-29549051 35 1.97e-05 tttctgggaa aggggtgg ggagttcccg chr12:32174025-32174105 45 1.97e-05 tttctgggaa aggggtgg gtaattccca chr6:147208413-147208493 20 1.97e-05 tttccaggaa aggggtgg acaatcccca chr3:99495625-99495705 5 1.97e-05 aaca aggggtgg attcatgagt chr7:32945034-32945114 73 1.97e-05 ttaccaggaa aggggtgg chrX:40430592-40430672 1 1.97e-05 . aggggtgg attattcatg chr20:2506433-2506513 2 1.97e-05 a aggggtgg attattcagg chr1:110406925-110407005 33 1.97e-05 tttctaggaa aggggtgg agatttcccg chr14:70163718-70163798 51 1.97e-05 tttccaggaa aggggtgg gaattcctgg chr19:2375513-2375593 36 1.97e-05 ATGGGGATGG AGGGGTGG GAACTGTGAT chr17:60711471-60711551 19 1.97e-05 tttctgggaa aggggtgg gcaattcccg chr15:45876045-45876125 26 1.97e-05 gttccgggaa aggggtgg gcaattcctg chr10:45906433-45906513 51 1.97e-05 tttccaggag aggggtgg gcaattccag chr17:46902915-46902995 41 1.97e-05 tttctaggaa aggggtgg gaaattcctg chrX:109244159-109244239 7 1.97e-05 taaaca aggggtgg attattcatg chr11:118583485-11858356 40 1.97e-05 tttcggggaa aggggtgg gcaattcccg chr16:1728149-1728229 24 4.19e-05 GGTGGGCGTG AGGGGCGG TGGCCGCGCT chr6:34499631-34499711 52 4.19e-05 GTGGTGGTGC AGGGGCGG TGCCTGAGAG chr1:12717663-12717743 19 4.19e-05 tctttaacca aggggcgg aatattcatg chr3:12824099-12824179 25 4.19e-05 tttctgggaa aggggcgg ggagttccca chr16:639761-639841 64 4.19e-05 AAGGCGGGGG AGGGGCGG TCATGACAG chr9:34989515-34989595 59 4.19e-05 GCCGGGTGAC AGGGGCGG AGGATGGGCG chr17:47270321-47270401 54 4.19e-05 GACAGAACCA AGGGGCGG GGAAACGGCG chr19:51161556-51161636 2 4.19e-05 G AGGGGCGG GCCCCGGAGC chr2:26980878-26980958 19 4.19e-05 tttccaggaa aggggcgg ggatttcctg chr14:104181860-10418194 59 4.19e-05 TCTCCCTGAG AGGGGCGG AGCGTACCCG chr22:40440656-40440736 21 4.19e-05 GAGGAATTGG AGGGGCGG AACGACAGCT chr1:25757185-25757265 48 4.19e-05 CGTCCTTCAA AGGGGCGG GTTCTAGAGT chr20:45035308-45035388 62 4.19e-05 TCACTCAAGA AGGGGCGG GCACAGCTGC chr11:76622253-76622333 54 4.19e-05 tttccaggaa aggggcgg gcaattcctg chr2:208663492-208663572 12 6.11e-05 tggtctaaaa aggggagg aaccctcagt chr1:159047049-159047129 33 6.11e-05 tctgtaatca aggggagg ggttttctgg chr16:20956634-20956714 16 6.11e-05 tagtctagaa aggggagg aaccctcact chr10:29101071-29101151 11 6.11e-05 tagtctaaaa aggggagg agccctcagt chr6:2980528-2980608 12 6.11e-05 tgctctgaaa aggggagg aaccctcagt chr15:75744123-75744203 61 6.11e-05 CTCGACTGGT AGGGGAGG GGGAGCCGCT chr5:168008264-168008344 25 6.11e-05 tggtctgtaa aggggagg aaccctcagt chr7:73574703-73574783 17 6.11e-05 cggtctaaaa aggggagg aaccgtcagt chr8:41316022-41316102 11 6.11e-05 ttatctagaa aggggagg agccctcagt chr10:94589711-94589791 8 6.11e-05 tctaaaa aggggagg aaccctcaat chr7:130756966-130757046 8 6.11e-05 tctaaaa aggggagg aactctcagt chr5:141826406-141826486 17 1.01e-04 tatgctaaaa aagggtgg attattcatg chr1:9834928-9835008 1 1.01e-04 . aagggtgg attattcatg chr1:117664512-117664592 21 1.46e-04 CACTCACGCG GGGGGCGG GACCTGACAA chr22:41032803-41032883 21 1.46e-04 CGGCGGACTA AAGGGCGG GCGGAGAAGG chr17:58755070-58755150 49 1.46e-04 GCTGACCTCC AAGGGCGG TGCCCGGCCA chr17:47866525-47866605 5 1.46e-04 GTGC GGGGGCGG TGTCTGGCCC chr19:12847804-12847884 16 1.46e-04 GAATAACAGA GGGGGCGG ACCTGAGGTG chr16:30382110-30382190 12 1.46e-04 ATGACCGCGG AAGGGCGG AGGAGGAGGC chr2:65283357-65283437 20 1.46e-04 GGACGAAGTA GGGGGCGG GCTCATCTTG chr4:52709125-52709205 45 1.46e-04 TTGGCCAGTG GGGGGCGG GGCCTCGTTG chr2:136288814-136288894 11 1.46e-04 TGCGTCCTTC AAGGGCGG TTACTTACCA chr2:208637347-208637427 22 2.02e-04 tggtctaaga gggggagg aaccctcagt chr12:107504010-10750409 9 2.02e-04 gtctaaaa gggggagg aaccctcagt chr11:63953423-63953503 59 2.02e-04 CCTGAGGTGC GGGGGAGG CAGGGTTGAG chr11:75401450-75401530 18 2.02e-04 tggtgtaaaa atgggtgg cactacaatt chr8:91592739-91592819 26 2.02e-04 ggtgtaaaaa atgggtgg tactacagtt chr11:35364915-35364995 19 2.02e-04 tggtgtaaaa atgggtgg caccacagtt chr22:36784199-36784279 24 2.02e-04 CTGCGGCCAG ATGGGTGG GGATTCAACA chr12:49504686-49504766 18 2.02e-04 GTTCCTTCCA GGGGGAGG AACTCATTGG chr1:23923792-23923872 11 2.02e-04 tggtctaaaa aagggagg aatcctcagt chr8:98775213-98775293 11 2.02e-04 tctaatatgg gggggagg aaccttcggt chr3:45103661-45103741 8 2.02e-04 tctaaaa gggggagg aacccttagt chr6:110939213-110939293 4 2.02e-04 aaa atgggtgg caccacagtt chr5:132308014-132308094 20 2.02e-04 tggtctaaag gggggagg aatgcttagt chr9:115308591-115308671 8 2.02e-04 gtctgat gggggagg aaccctcagt chr16:84538262-84538342 39 2.75e-04 AACATTGCTG AGGGGCAG TCATTTGGTC chr14:23790493-23790573 39 2.75e-04 GCCCCGCCTT AGAGGTGG GGCCTTATTT chr17:25902295-25902375 22 2.75e-04 tttctgggaa aggggcag gcaattcctg chr4:185260667-185260747 35 2.75e-04 tttctaggaa agaggtgg gcaattcctg chr1:1070855-1070935 46 2.75e-04 tttctgggaa aggggcag gcaattccca chr6:15896078-15896158 3 2.75e-04 ca aggggcag attattcatg chr7:2884096-2884176 23 3.11e-04 CGACGCCGAA AGAGGCGG GATCTTTGAG chr10:104261964-10426204 28 3.11e-04 GGCAAGGCTA AGAGGCGG TATCATTGGC chrX:48539039-48539119 28 3.28e-04 tggtctaaaa aggggaag aaccttcagt chr3:194489996-194490076 42 3.28e-04 ATTTCTAAGC AGGGGAAG CCCGCTCTCC chr16:67217568-67217648 30 3.44e-04 AACCAGAAAT AGAGGAGG GGCGTGACCT chr1:120838592-120838672 37 3.44e-04 GCCGGGGTAG AGAGGAGG GGTGTTGCGG chr22:35696154-35696234 52 3.64e-04 GGTAAGGAGA GAGGGTGG GTCCGGATGC chr19:46498521-46498601 70 3.86e-04 GGAAGTTTTG GAGGGCGG GTT chr13:20532753-20532833 65 3.86e-04 TGAgcgcgcg gagggcgg ggcctccc chr3:113415656-113415736 5 3.86e-04 GCTA GAGGGCGG GAGGAGGCGG chr7:72298905-72298985 60 3.86e-04 TCCGGGCGAT GAGGGCGG AGCGCTTCCG chr1:6845250-6845330 53 4.42e-04 TTTCCTGGGA GTGGGTGG GGAGGGGGCG chr4:68587573-68587653 52 4.42e-04 tttctgggaa aggagtgg gcaattccca chr9:101614040-101614120 21 4.42e-04 atgctaaaca aggagtgg atgattcatg chr12:122028204-12202828 71 4.42e-04 GACGATCCCC GAGGGAGG GC chr17:74597819-74597899 20 4.42e-04 atgctaaacg aggagtgg attattatgt chr19:45394320-45394400 60 4.84e-04 TTCAGGGAAA GTGGGCGG GACTTTATGC chr1:22118074-22118154 27 6.09e-04 tttccgagaa agggatgg gcatttccca chr19:54641276-54641356 46 6.09e-04 ATCCGCGAAA GGGGGCAG GGCGCATCCC chr17:39943146-39943226 36 6.09e-04 AGTCGGCTCT AGGGATGG ACTCTAACTT chr1:38397719-38397799 23 6.09e-04 AGGAACAAAT GGGGGCAG ACTGAGCCAC chr1:236515164-236515244 36 6.09e-04 attcctggaa aaaggtgg aggtttctcg chr11:44552072-44552152 46 6.09e-04 tttctgggta aagggcag agatttccag chr14:103893961-10389404 14 6.09e-04 tttctgggaa aagggcag agatttcctg chr11:61407717-61407797 19 7.03e-04 tggtctaaaa gtgggagg aaccctcagt chr3:129418241-129418321 22 7.03e-04 tggtctaaaa gtgggagg aaccttgagt chr3:88108233-88108313 21 7.03e-04 ATAGTAGTGG AAAGGCGG GCATGAACAT chr22:29999335-29999415 57 7.03e-04 TCACCCCAAA GGAGGCGG GACGGAGCGG chr16:57769535-57769615 57 7.03e-04 AGTCCTGGCA GGAGGCGG AGCACCCGCG chr11:277586-277666 23 7.69e-04 tttccaggaa agtggtgg gcaattctca chr19:6425257-6425337 13 8.70e-04 GCTTGTAAAG ATGGGCAG CCAATTAATC chr6:32143925-32144005 3 8.70e-04 TG ATGGGCAG CCTGTTTTGC chr7:138043973-138044053 5 8.70e-04 aaaa agggaagg aaccgtcagt chr1:150669779-150669859 1 8.70e-04 . AAAGGAGG CAGGTTTGCG chr8:145159235-145159315 68 8.70e-04 GGCAGAACTG AGTGGCGG GTACG chr22:39101518-39101598 37 1.09e-03 AGGAGAGTGA AGGGGCGT TGACGAGTAA chr12:68726214-68726294 48 1.30e-03 GATTTGACCA ATGAGTGG CCGAAAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:157100640-157100720 2e-05 22_[+4]_50 chr8:27697279-27697359 2e-05 7_[+4]_65 chr5:125849857-125849937 2e-05 41_[+4]_31 chr9:117319490-117319570 2e-05 20_[+4]_52 chr19:35656191-35656271 2e-05 37_[+4]_35 chr5:180603379-180603459 2e-05 35_[+4]_37 chr1:100001134-100001214 2e-05 39_[+4]_33 chr22:29548971-29549051 2e-05 34_[+4]_38 chr12:32174025-32174105 2e-05 44_[+4]_28 chr6:147208413-147208493 2e-05 19_[+4]_53 chr3:99495625-99495705 2e-05 4_[+4]_68 chr7:32945034-32945114 2e-05 72_[+4] chrX:40430592-40430672 2e-05 [+4]_72 chr20:2506433-2506513 2e-05 1_[+4]_71 chr1:110406925-110407005 2e-05 32_[+4]_40 chr14:70163718-70163798 2e-05 50_[+4]_22 chr19:2375513-2375593 2e-05 35_[+4]_37 chr17:60711471-60711551 2e-05 18_[+4]_54 chr15:45876045-45876125 2e-05 25_[+4]_47 chr10:45906433-45906513 2e-05 50_[+4]_22 chr17:46902915-46902995 2e-05 40_[+4]_32 chrX:109244159-109244239 2e-05 6_[+4]_66 chr11:118583485-11858356 2e-05 39_[+4]_33 chr16:1728149-1728229 4.2e-05 23_[+4]_49 chr6:34499631-34499711 4.2e-05 51_[+4]_21 chr1:12717663-12717743 4.2e-05 18_[+4]_54 chr3:12824099-12824179 4.2e-05 24_[+4]_48 chr16:639761-639841 4.2e-05 63_[+4]_9 chr9:34989515-34989595 4.2e-05 58_[+4]_14 chr17:47270321-47270401 4.2e-05 53_[+4]_19 chr19:51161556-51161636 4.2e-05 1_[+4]_71 chr2:26980878-26980958 4.2e-05 18_[+4]_54 chr14:104181860-10418194 4.2e-05 58_[+4]_14 chr22:40440656-40440736 4.2e-05 20_[+4]_52 chr1:25757185-25757265 4.2e-05 47_[+4]_25 chr20:45035308-45035388 4.2e-05 61_[+4]_11 chr11:76622253-76622333 4.2e-05 53_[+4]_19 chr2:208663492-208663572 6.1e-05 11_[+4]_61 chr1:159047049-159047129 6.1e-05 32_[+4]_40 chr16:20956634-20956714 6.1e-05 15_[+4]_57 chr10:29101071-29101151 6.1e-05 10_[+4]_62 chr6:2980528-2980608 6.1e-05 11_[+4]_61 chr15:75744123-75744203 6.1e-05 60_[+4]_12 chr5:168008264-168008344 6.1e-05 24_[+4]_48 chr7:73574703-73574783 6.1e-05 16_[+4]_56 chr8:41316022-41316102 6.1e-05 10_[+4]_62 chr10:94589711-94589791 6.1e-05 7_[+4]_65 chr7:130756966-130757046 6.1e-05 7_[+4]_65 chr5:141826406-141826486 0.0001 16_[+4]_56 chr1:9834928-9835008 0.0001 [+4]_72 chr1:117664512-117664592 0.00015 20_[+4]_52 chr22:41032803-41032883 0.00015 20_[+4]_52 chr17:58755070-58755150 0.00015 48_[+4]_24 chr17:47866525-47866605 0.00015 4_[+4]_68 chr19:12847804-12847884 0.00015 15_[+4]_57 chr16:30382110-30382190 0.00015 11_[+4]_61 chr2:65283357-65283437 0.00015 19_[+4]_53 chr4:52709125-52709205 0.00015 44_[+4]_28 chr2:136288814-136288894 0.00015 10_[+4]_62 chr2:208637347-208637427 0.0002 21_[+4]_51 chr12:107504010-10750409 0.0002 8_[+4]_64 chr11:63953423-63953503 0.0002 58_[+4]_14 chr11:75401450-75401530 0.0002 17_[+4]_55 chr8:91592739-91592819 0.0002 25_[+4]_47 chr11:35364915-35364995 0.0002 18_[+4]_54 chr22:36784199-36784279 0.0002 23_[+4]_49 chr12:49504686-49504766 0.0002 17_[+4]_55 chr1:23923792-23923872 0.0002 10_[+4]_62 chr8:98775213-98775293 0.0002 10_[+4]_62 chr3:45103661-45103741 0.0002 7_[+4]_65 chr6:110939213-110939293 0.0002 3_[+4]_69 chr5:132308014-132308094 0.0002 19_[+4]_53 chr9:115308591-115308671 0.0002 7_[+4]_65 chr16:84538262-84538342 0.00027 38_[+4]_34 chr14:23790493-23790573 0.00027 38_[+4]_34 chr17:25902295-25902375 0.00027 21_[+4]_51 chr4:185260667-185260747 0.00027 34_[+4]_38 chr1:1070855-1070935 0.00027 45_[+4]_27 chr6:15896078-15896158 0.00027 2_[+4]_70 chr7:2884096-2884176 0.00031 22_[+4]_50 chr10:104261964-10426204 0.00031 27_[+4]_45 chrX:48539039-48539119 0.00033 27_[+4]_45 chr3:194489996-194490076 0.00033 41_[+4]_31 chr16:67217568-67217648 0.00034 29_[+4]_43 chr1:120838592-120838672 0.00034 36_[+4]_36 chr22:35696154-35696234 0.00036 51_[+4]_21 chr19:46498521-46498601 0.00039 69_[+4]_3 chr13:20532753-20532833 0.00039 64_[+4]_8 chr3:113415656-113415736 0.00039 4_[+4]_68 chr7:72298905-72298985 0.00039 59_[+4]_13 chr1:6845250-6845330 0.00044 52_[+4]_20 chr4:68587573-68587653 0.00044 51_[+4]_21 chr9:101614040-101614120 0.00044 20_[+4]_52 chr12:122028204-12202828 0.00044 70_[+4]_2 chr17:74597819-74597899 0.00044 19_[+4]_53 chr19:45394320-45394400 0.00048 59_[+4]_13 chr1:22118074-22118154 0.00061 26_[+4]_46 chr19:54641276-54641356 0.00061 45_[+4]_27 chr17:39943146-39943226 0.00061 35_[+4]_37 chr1:38397719-38397799 0.00061 22_[+4]_50 chr1:236515164-236515244 0.00061 35_[+4]_37 chr11:44552072-44552152 0.00061 45_[+4]_27 chr14:103893961-10389404 0.00061 13_[+4]_59 chr11:61407717-61407797 0.0007 18_[+4]_54 chr3:129418241-129418321 0.0007 21_[+4]_51 chr3:88108233-88108313 0.0007 20_[+4]_52 chr22:29999335-29999415 0.0007 56_[+4]_16 chr16:57769535-57769615 0.0007 56_[+4]_16 chr11:277586-277666 0.00077 22_[+4]_50 chr19:6425257-6425337 0.00087 12_[+4]_60 chr6:32143925-32144005 0.00087 2_[+4]_70 chr7:138043973-138044053 0.00087 4_[+4]_68 chr1:150669779-150669859 0.00087 [+4]_72 chr8:145159235-145159315 0.00087 67_[+4]_5 chr22:39101518-39101598 0.0011 36_[+4]_36 chr12:68726214-68726294 0.0013 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGHGG width=8 seqs=116 chr7:157100640-157100720 ( 23) AGGGGTGG 1 chr8:27697279-27697359 ( 8) AGGGGTGG 1 chr5:125849857-125849937 ( 42) AGGGGTGG 1 chr9:117319490-117319570 ( 21) AGGGGTGG 1 chr19:35656191-35656271 ( 38) AGGGGTGG 1 chr5:180603379-180603459 ( 36) AGGGGTGG 1 chr1:100001134-100001214 ( 40) AGGGGTGG 1 chr22:29548971-29549051 ( 35) AGGGGTGG 1 chr12:32174025-32174105 ( 45) AGGGGTGG 1 chr6:147208413-147208493 ( 20) AGGGGTGG 1 chr3:99495625-99495705 ( 5) AGGGGTGG 1 chr7:32945034-32945114 ( 73) AGGGGTGG 1 chrX:40430592-40430672 ( 1) AGGGGTGG 1 chr20:2506433-2506513 ( 2) AGGGGTGG 1 chr1:110406925-110407005 ( 33) AGGGGTGG 1 chr14:70163718-70163798 ( 51) AGGGGTGG 1 chr19:2375513-2375593 ( 36) AGGGGTGG 1 chr17:60711471-60711551 ( 19) AGGGGTGG 1 chr15:45876045-45876125 ( 26) AGGGGTGG 1 chr10:45906433-45906513 ( 51) AGGGGTGG 1 chr17:46902915-46902995 ( 41) AGGGGTGG 1 chrX:109244159-109244239 ( 7) AGGGGTGG 1 chr11:118583485-11858356 ( 40) AGGGGTGG 1 chr16:1728149-1728229 ( 24) AGGGGCGG 1 chr6:34499631-34499711 ( 52) AGGGGCGG 1 chr1:12717663-12717743 ( 19) AGGGGCGG 1 chr3:12824099-12824179 ( 25) AGGGGCGG 1 chr16:639761-639841 ( 64) AGGGGCGG 1 chr9:34989515-34989595 ( 59) AGGGGCGG 1 chr17:47270321-47270401 ( 54) AGGGGCGG 1 chr19:51161556-51161636 ( 2) AGGGGCGG 1 chr2:26980878-26980958 ( 19) AGGGGCGG 1 chr14:104181860-10418194 ( 59) AGGGGCGG 1 chr22:40440656-40440736 ( 21) AGGGGCGG 1 chr1:25757185-25757265 ( 48) AGGGGCGG 1 chr20:45035308-45035388 ( 62) AGGGGCGG 1 chr11:76622253-76622333 ( 54) AGGGGCGG 1 chr2:208663492-208663572 ( 12) AGGGGAGG 1 chr1:159047049-159047129 ( 33) AGGGGAGG 1 chr16:20956634-20956714 ( 16) AGGGGAGG 1 chr10:29101071-29101151 ( 11) AGGGGAGG 1 chr6:2980528-2980608 ( 12) AGGGGAGG 1 chr15:75744123-75744203 ( 61) AGGGGAGG 1 chr5:168008264-168008344 ( 25) AGGGGAGG 1 chr7:73574703-73574783 ( 17) AGGGGAGG 1 chr8:41316022-41316102 ( 11) AGGGGAGG 1 chr10:94589711-94589791 ( 8) AGGGGAGG 1 chr7:130756966-130757046 ( 8) AGGGGAGG 1 chr5:141826406-141826486 ( 17) AAGGGTGG 1 chr1:9834928-9835008 ( 1) AAGGGTGG 1 chr1:117664512-117664592 ( 21) GGGGGCGG 1 chr22:41032803-41032883 ( 21) AAGGGCGG 1 chr17:58755070-58755150 ( 49) AAGGGCGG 1 chr17:47866525-47866605 ( 5) GGGGGCGG 1 chr19:12847804-12847884 ( 16) GGGGGCGG 1 chr16:30382110-30382190 ( 12) AAGGGCGG 1 chr2:65283357-65283437 ( 20) GGGGGCGG 1 chr4:52709125-52709205 ( 45) GGGGGCGG 1 chr2:136288814-136288894 ( 11) AAGGGCGG 1 chr2:208637347-208637427 ( 22) GGGGGAGG 1 chr12:107504010-10750409 ( 9) GGGGGAGG 1 chr11:63953423-63953503 ( 59) GGGGGAGG 1 chr11:75401450-75401530 ( 18) ATGGGTGG 1 chr8:91592739-91592819 ( 26) ATGGGTGG 1 chr11:35364915-35364995 ( 19) ATGGGTGG 1 chr22:36784199-36784279 ( 24) ATGGGTGG 1 chr12:49504686-49504766 ( 18) GGGGGAGG 1 chr1:23923792-23923872 ( 11) AAGGGAGG 1 chr8:98775213-98775293 ( 11) GGGGGAGG 1 chr3:45103661-45103741 ( 8) GGGGGAGG 1 chr6:110939213-110939293 ( 4) ATGGGTGG 1 chr5:132308014-132308094 ( 20) GGGGGAGG 1 chr9:115308591-115308671 ( 8) GGGGGAGG 1 chr16:84538262-84538342 ( 39) AGGGGCAG 1 chr14:23790493-23790573 ( 39) AGAGGTGG 1 chr17:25902295-25902375 ( 22) AGGGGCAG 1 chr4:185260667-185260747 ( 35) AGAGGTGG 1 chr1:1070855-1070935 ( 46) AGGGGCAG 1 chr6:15896078-15896158 ( 3) AGGGGCAG 1 chr7:2884096-2884176 ( 23) AGAGGCGG 1 chr10:104261964-10426204 ( 28) AGAGGCGG 1 chrX:48539039-48539119 ( 28) AGGGGAAG 1 chr3:194489996-194490076 ( 42) AGGGGAAG 1 chr16:67217568-67217648 ( 30) AGAGGAGG 1 chr1:120838592-120838672 ( 37) AGAGGAGG 1 chr22:35696154-35696234 ( 52) GAGGGTGG 1 chr19:46498521-46498601 ( 70) GAGGGCGG 1 chr13:20532753-20532833 ( 65) GAGGGCGG 1 chr3:113415656-113415736 ( 5) GAGGGCGG 1 chr7:72298905-72298985 ( 60) GAGGGCGG 1 chr1:6845250-6845330 ( 53) GTGGGTGG 1 chr4:68587573-68587653 ( 52) AGGAGTGG 1 chr9:101614040-101614120 ( 21) AGGAGTGG 1 chr12:122028204-12202828 ( 71) GAGGGAGG 1 chr17:74597819-74597899 ( 20) AGGAGTGG 1 chr19:45394320-45394400 ( 60) GTGGGCGG 1 chr1:22118074-22118154 ( 27) AGGGATGG 1 chr19:54641276-54641356 ( 46) GGGGGCAG 1 chr17:39943146-39943226 ( 36) AGGGATGG 1 chr1:38397719-38397799 ( 23) GGGGGCAG 1 chr1:236515164-236515244 ( 36) AAAGGTGG 1 chr11:44552072-44552152 ( 46) AAGGGCAG 1 chr14:103893961-10389404 ( 14) AAGGGCAG 1 chr11:61407717-61407797 ( 19) GTGGGAGG 1 chr3:129418241-129418321 ( 22) GTGGGAGG 1 chr3:88108233-88108313 ( 21) AAAGGCGG 1 chr22:29999335-29999415 ( 57) GGAGGCGG 1 chr16:57769535-57769615 ( 57) GGAGGCGG 1 chr11:277586-277666 ( 23) AGTGGTGG 1 chr19:6425257-6425337 ( 13) ATGGGCAG 1 chr6:32143925-32144005 ( 3) ATGGGCAG 1 chr7:138043973-138044053 ( 5) AGGGAAGG 1 chr1:150669779-150669859 ( 1) AAAGGAGG 1 chr8:145159235-145159315 ( 68) AGTGGCGG 1 chr22:39101518-39101598 ( 37) AGGGGCGT 1 chr12:68726214-68726294 ( 48) ATGAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.93248 E= 9.0e-062 174 -1350 -20 -1350 -57 -1350 147 -119 -128 -1350 173 -378 -274 -1350 185 -1350 -315 -1350 187 -1350 12 54 -1350 61 -115 -1350 175 -1350 -1350 -1350 189 -477 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 9.0e-062 0.767241 0.000000 0.232759 0.000000 0.155172 0.000000 0.741379 0.103448 0.094828 0.000000 0.887931 0.017241 0.034483 0.000000 0.965517 0.000000 0.025862 0.000000 0.974138 0.000000 0.250000 0.387931 0.000000 0.362069 0.103448 0.000000 0.896552 0.000000 0.000000 0.000000 0.991379 0.008621 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGHGG MEME-4 regular expression -------------------------------------------------------------------------------- [AG]GGGG[CTA]GG -------------------------------------------------------------------------------- Time 14.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CCDCCCCT MEME-5 width = 8 sites = 118 llr = 862 E-value = 3.7e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4::::1 pos.-specific C a9:9a892 probability G ::2::::: matrix T :141:217 bits 2.1 1.9 * 1.7 * ** 1.5 ** ** Relative 1.3 ** **** Entropy 1.1 ** **** (10.5 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCCT consensus T C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:68279265-68279345 11 1.93e-05 caggagttgc ccacccct ttcccagaaa chr2:97587929-97588009 37 1.93e-05 tgggaattgc ccacccct ttcccagaaa chr2:208663492-208663572 42 1.93e-05 caggaattgc ccacccct ttcctggaaa chr17:26235420-26235500 57 1.93e-05 tgggaattgc ccacccct ttccaggaaa chr11:61407717-61407797 49 1.93e-05 caggaattgc ccacccct ttctgggaaa chrX:48539039-48539119 58 1.93e-05 ccggaattgc ccacccct ttcctggaaa chr3:40393762-40393842 49 1.93e-05 catgaataat ccacccct tgtttagcac chr3:194489996-194490076 67 1.93e-05 TCCTCAGGCC CCACCCCT TGTAGA chr3:129418241-129418321 52 1.93e-05 agggaattgc ccacccct ttctcagaaa chr16:20956634-20956714 46 1.93e-05 ttggaattgc ccacccct ttcccggaaa chr1:23923792-23923872 41 1.93e-05 caggaattgc ccacccct ttcccagaaa chr8:98775213-98775293 72 1.93e-05 catgaataat ccacccct t chr9:138313384-138313464 23 1.93e-05 agggaaatct ccacccct ttcctggaaa chr10:29101071-29101151 41 1.93e-05 tgggaattgc ccacccct ttccgggaaa chrX:49125694-49125774 67 1.93e-05 CACCTTGGCA CCACCCCT TCGAAG chr7:150019648-150019728 26 1.93e-05 cgggaactgc ccacccct ttctctgaaa chr8:41316022-41316102 72 1.93e-05 catgaataat ccacccct t chr1:27354620-27354700 38 1.93e-05 cataaatatt ccacccct tggttaaaga chr2:106084663-106084743 39 1.93e-05 catgaataat ccacccct tgtttggtat chr10:94589711-94589791 69 1.93e-05 catgaataat ccacccct tgtt chr7:130756966-130757046 69 1.93e-05 catgaataat ccacccct tgtt chr16:53537354-53537434 19 3.92e-05 TGCACTTGAC CCTCCCCT TACGTAACAG chr5:125849857-125849937 72 3.92e-05 attgagagtt cctcccct t chr9:117319490-117319570 51 3.92e-05 actgagggtt cctcccct ttttaggtca chr19:35656191-35656271 68 3.92e-05 actgaggatt cctcccct tttta chr11:62521656-62521736 18 3.92e-05 TTAAGATTGC CCTCCCCT GTCACGGATT chr1:100001134-100001214 70 3.92e-05 actgacggct cctcccct ttt chr11:277586-277666 53 3.92e-05 actgagggtt cctcccct tttagaccat chr1:22118074-22118154 57 3.92e-05 actgagagtt cctcccct ttttagacct chr3:99495625-99495705 63 3.92e-05 actgagggtt cctcccct ttttagaccg chr4:185260667-185260747 65 3.92e-05 actgagggtt cctcccct tttcaggc chr7:12787544-12787624 57 3.92e-05 actaagagtt cctcccct tttcagacca chr7:100825860-100825940 49 3.92e-05 CGTTTCGGCC CCTCCCCT TAAGTCCAAG chr14:103893961-10389404 44 3.92e-05 actgaaggtc cctcccct tttaggggac chr16:84538262-84538342 6 6.16e-05 GAGAG CCGCCCCT TCCCTGTTGC chr2:208637347-208637427 52 6.16e-05 cgggaattgc ccgcccct ttcccggaaa chr6:32146031-32146111 67 6.16e-05 TAACCTTTTC CCGCCCCT ACCCTT chr3:114866242-114866322 60 6.16e-05 ccccccgtcc ccgcccct ttcttcctct chr19:19174482-19174562 31 6.16e-05 CTTCGTAGCC CCGCCCCT GGCCCCCAGC chr15:75744123-75744203 38 6.16e-05 TATGATTTTC CCGCCCCT TCCCCCTCGA chr14:73925373-73925453 14 6.16e-05 TCGCTCTTTA CCGCCCCT TTTCCTAAAC chr5:168008264-168008344 55 6.16e-05 tgggaattgt ccgcccct ttcctggaaa chr19:46498521-46498601 15 1.06e-04 ACGTTAGGTG CCTCCCCC AACCCATTTG chr10:70570299-70570379 69 1.06e-04 actgaggttt cctccccc tttt chr2:9309540-9309620 61 1.06e-04 actgagggtt cctccccc ttttagacca chr2:26980878-26980958 49 1.06e-04 agtgagtgtt cctccccc tttctgacca chr17:25902295-25902375 52 1.06e-04 actgagggcc cctccccc tctttagacc chrX:40430592-40430672 62 1.06e-04 actgagggtt cctccccc ttttagacca chrX:109244159-109244239 68 1.06e-04 actgagggtt cctccccc tttca chr2:47525391-47525471 46 1.23e-04 caggaattgc ccacctct ttcttggaaa chr7:32720586-32720666 71 1.23e-04 catgaataat ccacctct tg chr6:2980528-2980608 42 1.23e-04 tgggagttgt ccacctct ttcccggaaa chr17:47866525-47866605 61 1.41e-04 GAGAACGATC CCTCCTCT CCTGATTGGT chr19:18315099-18315179 58 1.41e-04 TTGTCTACGC CCTCCTCT TGTCCAATGG chr6:147208413-147208493 50 1.41e-04 attgagggtt cctcctct ttttagacca chr17:45177660-45177740 12 1.41e-04 AATCTTCCGC CCTCCTCT GGCGCTCATT chr1:110406925-110407005 63 1.41e-04 accaaaggtt cctcctct ttttagacca chr19:36505179-36505259 60 1.66e-04 CAGTATTCGC CCGCCCCC TTCATGCTCG chr19:12551916-12551996 56 1.66e-04 GCGTCAGGTC CCGCCCCC TGAGGGCTGA chr1:38397515-38397595 10 1.66e-04 GAACGGAGC CCGCCCCC TGTGGCCGGG chr11:75526128-75526208 62 1.66e-04 CCGTTGGGTC CCGCCCCC TTGAGGGCTA chr19:11457040-11457120 24 1.66e-04 CCCTGGGATC CCGCCCCC TCCACGGGCT chr7:138043973-138044053 35 1.83e-04 tgggaaatcc ccaccctt ttcctggaaa chr12:107504010-10750409 70 1.83e-04 catgaataat ccaccctt gtt chr1:153895564-153895644 21 1.83e-04 GGACTTCACC CCACCCTT GAAGAATGAG chr6:110939213-110939293 64 1.83e-04 catgaatatt ccaccctt tggttaaag chr11:61872785-61872865 55 1.83e-04 catgaataag ccaccctt gtttagcatg chr19:4472044-4472124 54 2.19e-04 TTATTGGTCG CCTCCCTT CTCTGTCCCC chr18:14132482-14132562 17 2.19e-04 TGGACAGTTC CCACCCCA GAGCCCTGAT chr6:32143925-32144005 49 2.59e-04 TCTGGCATCT CCTCCCCA CATCTACCAG chr20:23331245-23331325 72 2.59e-04 CCGGAAGCTA CCGCCTCT T chr1:9834928-9835008 63 2.59e-04 actgaggact cctcccca ttttagagca chr17:58755070-58755150 9 2.59e-04 AGGCGGGT CCGCCTCT TTCCTACTTG chr13:111368106-11136818 21 2.59e-04 CCGCTGGCCT CCTCCCCA TTGGCTGGAG chr11:67798024-67798104 16 2.59e-04 TTTCTGAATC CCGCCTCT TTCAGCAGCC chr17:80325857-80325937 17 2.59e-04 ggcacaggtc cctcccca gcttcctcat chr22:39101518-39101598 12 2.59e-04 AGGCTTAGTA CCGCCTCT GGAAACAAGG chr2:73460447-73460527 28 2.59e-04 GCCACACTTT CCGCCTCT GCGCCTTAGC chr15:75744351-75744431 69 2.76e-04 CATTGGAAGG CTACCCCT GGCT chr15:45876045-45876125 56 2.94e-04 actgagggtt cttcccct ttttagacca chr17:46902915-46902995 71 2.94e-04 aatgagagtt cttcccct tt chr2:62932643-62932723 39 3.13e-04 CGGGGAAAAA CCACCTCC CGAGCAAGGG chr14:96001165-96001245 57 3.13e-04 GGCATAAGGC CCACCTCC TACCTGCCGG chr22:36784199-36784279 55 3.13e-04 TCTTTCCGCC CCACCTCC ACCCGCTCCA chr5:176853340-176853420 35 3.13e-04 CCCAGAGTAC CCACCTCC ATTGTCCCGG chr19:3971235-3971315 39 3.50e-04 TGAACACTCG CCATCCCT GATTTCATTG chr1:113932878-113932958 13 3.50e-04 CTAGTGCCCG CCTCCTCC ACTCGCACCG chr3:45103661-45103741 68 3.50e-04 catgaataat ccatccct tgttt chr20:40247074-40247154 4 3.88e-04 CCG CCTTCCCT GTCGCGCCAT chr22:29548971-29549051 65 3.88e-04 actgagggtt ccttccct ttttagac chr7:23053770-23053850 23 4.09e-04 CCAACCACCA CCGCCCCA CGCCAGTTCA chr12:27676968-27677048 50 4.09e-04 gcccccggcc ccgccccA CTGCTGACTC chr13:20437813-20437893 16 4.49e-04 CGAGGAGGCC CCACCCTC CGTGCGCTCG chr20:3869856-3869936 4 4.49e-04 CCA CCACCCTC TCCCCGCCCC chr4:123828134-123828214 24 4.49e-04 cgggaattgc ctgcccct ttcctggaaa chr5:132308014-132308094 50 4.49e-04 tgggaaatcc ctgcccct ttcctggaaa chr9:115308591-115308671 38 4.49e-04 caagaattcc ctgcccct ttcctagaaa chr19:36248878-36248958 63 4.69e-04 TCCTGAAACA CCTCCCTC CGGGTACTTC chr11:118583485-11858356 70 4.69e-04 actgagggtt cctccctc ttt chr6:151550607-151550687 11 5.08e-04 ctggaactgc ccacacct ttcccagaaa chr19:12405705-12405785 42 5.08e-04 CCTCCAGGTC CCGCCTCC TGGGCACTGA chr19:19496438-19496518 60 5.08e-04 ATGAAGCTGG CCACACCT TCCATGGGGT chr21:47604561-47604641 40 5.08e-04 AGTGGGCCGG CCACACCT CCAGCCCTGT chr10:101380297-10138037 66 5.80e-04 CGCCTACATC CCACCTTT TCCCCTT chr15:101137166-10113724 21 6.49e-04 tgggaactgc ccacccat ttcctggaaa chr20:2506433-2506513 63 6.49e-04 actgaaggtt cttccccc tcttttagac chr2:238872952-238873032 63 6.83e-04 actgaggggt cctcccat ttttagatca chr2:88927166-88927246 20 7.76e-04 TGAGAAATGC CCTTCCCC GACGTCTTTT chr13:20532753-20532833 38 7.76e-04 CTCCGGCCAG CCTTCCCC GTCAGCCAAT chr17:21837441-21837521 59 9.00e-04 GGAAGAACAG CCTCCCTA ACCCATCAGG chr19:50878202-50878282 16 9.55e-04 tgagaattgc ctaccctt ttcctggaaa chr9:35072752-35072832 21 9.55e-04 GGCCTGGCTC CCGCCTCA GTGATGCGAC chr7:73574703-73574783 47 1.01e-03 cgggaattgc ctacccca ttcctggaaa chr17:60711471-60711551 50 1.01e-03 ctgagggagt cttccctt tttagaccct chr7:112579940-112580020 7 1.12e-03 GTGGAC CCTCACCC AAAAGTGCAA chr10:42863505-42863585 33 1.12e-03 GCTTCAGGCC CCGTCCCC AGTCCGTGAG chr4:175204382-175204462 9 1.12e-03 TTAATGAG CCACCACT ACTGTCACTC chr14:94492588-94492668 35 1.19e-03 ACGTGAAGTC CCACCCAC TTTCTATGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:68279265-68279345 1.9e-05 10_[+5]_62 chr2:97587929-97588009 1.9e-05 36_[+5]_36 chr2:208663492-208663572 1.9e-05 41_[+5]_31 chr17:26235420-26235500 1.9e-05 56_[+5]_16 chr11:61407717-61407797 1.9e-05 48_[+5]_24 chrX:48539039-48539119 1.9e-05 57_[+5]_15 chr3:40393762-40393842 1.9e-05 48_[+5]_24 chr3:194489996-194490076 1.9e-05 66_[+5]_6 chr3:129418241-129418321 1.9e-05 51_[+5]_21 chr16:20956634-20956714 1.9e-05 45_[+5]_27 chr1:23923792-23923872 1.9e-05 40_[+5]_32 chr8:98775213-98775293 1.9e-05 71_[+5]_1 chr9:138313384-138313464 1.9e-05 22_[+5]_50 chr10:29101071-29101151 1.9e-05 40_[+5]_32 chrX:49125694-49125774 1.9e-05 66_[+5]_6 chr7:150019648-150019728 1.9e-05 25_[+5]_47 chr8:41316022-41316102 1.9e-05 71_[+5]_1 chr1:27354620-27354700 1.9e-05 37_[+5]_35 chr2:106084663-106084743 1.9e-05 38_[+5]_34 chr10:94589711-94589791 1.9e-05 68_[+5]_4 chr7:130756966-130757046 1.9e-05 68_[+5]_4 chr16:53537354-53537434 3.9e-05 18_[+5]_54 chr5:125849857-125849937 3.9e-05 71_[+5]_1 chr9:117319490-117319570 3.9e-05 50_[+5]_22 chr19:35656191-35656271 3.9e-05 67_[+5]_5 chr11:62521656-62521736 3.9e-05 17_[+5]_55 chr1:100001134-100001214 3.9e-05 69_[+5]_3 chr11:277586-277666 3.9e-05 52_[+5]_20 chr1:22118074-22118154 3.9e-05 56_[+5]_16 chr3:99495625-99495705 3.9e-05 62_[+5]_10 chr4:185260667-185260747 3.9e-05 64_[+5]_8 chr7:12787544-12787624 3.9e-05 56_[+5]_16 chr7:100825860-100825940 3.9e-05 48_[+5]_24 chr14:103893961-10389404 3.9e-05 43_[+5]_29 chr16:84538262-84538342 6.2e-05 5_[+5]_67 chr2:208637347-208637427 6.2e-05 51_[+5]_21 chr6:32146031-32146111 6.2e-05 66_[+5]_6 chr3:114866242-114866322 6.2e-05 59_[+5]_13 chr19:19174482-19174562 6.2e-05 30_[+5]_42 chr15:75744123-75744203 6.2e-05 37_[+5]_35 chr14:73925373-73925453 6.2e-05 13_[+5]_59 chr5:168008264-168008344 6.2e-05 54_[+5]_18 chr19:46498521-46498601 0.00011 14_[+5]_58 chr10:70570299-70570379 0.00011 68_[+5]_4 chr2:9309540-9309620 0.00011 60_[+5]_12 chr2:26980878-26980958 0.00011 48_[+5]_24 chr17:25902295-25902375 0.00011 51_[+5]_21 chrX:40430592-40430672 0.00011 61_[+5]_11 chrX:109244159-109244239 0.00011 67_[+5]_5 chr2:47525391-47525471 0.00012 45_[+5]_27 chr7:32720586-32720666 0.00012 70_[+5]_2 chr6:2980528-2980608 0.00012 41_[+5]_31 chr17:47866525-47866605 0.00014 60_[+5]_12 chr19:18315099-18315179 0.00014 57_[+5]_15 chr6:147208413-147208493 0.00014 49_[+5]_23 chr17:45177660-45177740 0.00014 11_[+5]_61 chr1:110406925-110407005 0.00014 62_[+5]_10 chr19:36505179-36505259 0.00017 59_[+5]_13 chr19:12551916-12551996 0.00017 55_[+5]_17 chr1:38397515-38397595 0.00017 9_[+5]_63 chr11:75526128-75526208 0.00017 61_[+5]_11 chr19:11457040-11457120 0.00017 23_[+5]_49 chr7:138043973-138044053 0.00018 34_[+5]_38 chr12:107504010-10750409 0.00018 69_[+5]_3 chr1:153895564-153895644 0.00018 20_[+5]_52 chr6:110939213-110939293 0.00018 63_[+5]_9 chr11:61872785-61872865 0.00018 54_[+5]_18 chr19:4472044-4472124 0.00022 53_[+5]_19 chr18:14132482-14132562 0.00022 16_[+5]_56 chr6:32143925-32144005 0.00026 48_[+5]_24 chr20:23331245-23331325 0.00026 71_[+5]_1 chr1:9834928-9835008 0.00026 62_[+5]_10 chr17:58755070-58755150 0.00026 8_[+5]_64 chr13:111368106-11136818 0.00026 20_[+5]_52 chr11:67798024-67798104 0.00026 15_[+5]_57 chr17:80325857-80325937 0.00026 16_[+5]_56 chr22:39101518-39101598 0.00026 11_[+5]_61 chr2:73460447-73460527 0.00026 27_[+5]_45 chr15:75744351-75744431 0.00028 68_[+5]_4 chr15:45876045-45876125 0.00029 55_[+5]_17 chr17:46902915-46902995 0.00029 70_[+5]_2 chr2:62932643-62932723 0.00031 38_[+5]_34 chr14:96001165-96001245 0.00031 56_[+5]_16 chr22:36784199-36784279 0.00031 54_[+5]_18 chr5:176853340-176853420 0.00031 34_[+5]_38 chr19:3971235-3971315 0.00035 38_[+5]_34 chr1:113932878-113932958 0.00035 12_[+5]_60 chr3:45103661-45103741 0.00035 67_[+5]_5 chr20:40247074-40247154 0.00039 3_[+5]_69 chr22:29548971-29549051 0.00039 64_[+5]_8 chr7:23053770-23053850 0.00041 22_[+5]_50 chr12:27676968-27677048 0.00041 49_[+5]_23 chr13:20437813-20437893 0.00045 15_[+5]_57 chr20:3869856-3869936 0.00045 3_[+5]_69 chr4:123828134-123828214 0.00045 23_[+5]_49 chr5:132308014-132308094 0.00045 49_[+5]_23 chr9:115308591-115308671 0.00045 37_[+5]_35 chr19:36248878-36248958 0.00047 62_[+5]_10 chr11:118583485-11858356 0.00047 69_[+5]_3 chr6:151550607-151550687 0.00051 10_[+5]_62 chr19:12405705-12405785 0.00051 41_[+5]_31 chr19:19496438-19496518 0.00051 59_[+5]_13 chr21:47604561-47604641 0.00051 39_[+5]_33 chr10:101380297-10138037 0.00058 65_[+5]_7 chr15:101137166-10113724 0.00065 20_[+5]_52 chr20:2506433-2506513 0.00065 62_[+5]_10 chr2:238872952-238873032 0.00068 62_[+5]_10 chr2:88927166-88927246 0.00078 19_[+5]_53 chr13:20532753-20532833 0.00078 37_[+5]_35 chr17:21837441-21837521 0.0009 58_[+5]_14 chr19:50878202-50878282 0.00095 15_[+5]_57 chr9:35072752-35072832 0.00095 20_[+5]_52 chr7:73574703-73574783 0.001 46_[+5]_26 chr17:60711471-60711551 0.001 49_[+5]_23 chr7:112579940-112580020 0.0011 6_[+5]_66 chr10:42863505-42863585 0.0011 32_[+5]_40 chr4:175204382-175204462 0.0011 8_[+5]_64 chr14:94492588-94492668 0.0012 34_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCDCCCCT width=8 seqs=118 chr8:68279265-68279345 ( 11) CCACCCCT 1 chr2:97587929-97588009 ( 37) CCACCCCT 1 chr2:208663492-208663572 ( 42) CCACCCCT 1 chr17:26235420-26235500 ( 57) CCACCCCT 1 chr11:61407717-61407797 ( 49) CCACCCCT 1 chrX:48539039-48539119 ( 58) CCACCCCT 1 chr3:40393762-40393842 ( 49) CCACCCCT 1 chr3:194489996-194490076 ( 67) CCACCCCT 1 chr3:129418241-129418321 ( 52) CCACCCCT 1 chr16:20956634-20956714 ( 46) CCACCCCT 1 chr1:23923792-23923872 ( 41) CCACCCCT 1 chr8:98775213-98775293 ( 72) CCACCCCT 1 chr9:138313384-138313464 ( 23) CCACCCCT 1 chr10:29101071-29101151 ( 41) CCACCCCT 1 chrX:49125694-49125774 ( 67) CCACCCCT 1 chr7:150019648-150019728 ( 26) CCACCCCT 1 chr8:41316022-41316102 ( 72) CCACCCCT 1 chr1:27354620-27354700 ( 38) CCACCCCT 1 chr2:106084663-106084743 ( 39) CCACCCCT 1 chr10:94589711-94589791 ( 69) CCACCCCT 1 chr7:130756966-130757046 ( 69) CCACCCCT 1 chr16:53537354-53537434 ( 19) CCTCCCCT 1 chr5:125849857-125849937 ( 72) CCTCCCCT 1 chr9:117319490-117319570 ( 51) CCTCCCCT 1 chr19:35656191-35656271 ( 68) CCTCCCCT 1 chr11:62521656-62521736 ( 18) CCTCCCCT 1 chr1:100001134-100001214 ( 70) CCTCCCCT 1 chr11:277586-277666 ( 53) CCTCCCCT 1 chr1:22118074-22118154 ( 57) CCTCCCCT 1 chr3:99495625-99495705 ( 63) CCTCCCCT 1 chr4:185260667-185260747 ( 65) CCTCCCCT 1 chr7:12787544-12787624 ( 57) CCTCCCCT 1 chr7:100825860-100825940 ( 49) CCTCCCCT 1 chr14:103893961-10389404 ( 44) CCTCCCCT 1 chr16:84538262-84538342 ( 6) CCGCCCCT 1 chr2:208637347-208637427 ( 52) CCGCCCCT 1 chr6:32146031-32146111 ( 67) CCGCCCCT 1 chr3:114866242-114866322 ( 60) CCGCCCCT 1 chr19:19174482-19174562 ( 31) CCGCCCCT 1 chr15:75744123-75744203 ( 38) CCGCCCCT 1 chr14:73925373-73925453 ( 14) CCGCCCCT 1 chr5:168008264-168008344 ( 55) CCGCCCCT 1 chr19:46498521-46498601 ( 15) CCTCCCCC 1 chr10:70570299-70570379 ( 69) CCTCCCCC 1 chr2:9309540-9309620 ( 61) CCTCCCCC 1 chr2:26980878-26980958 ( 49) CCTCCCCC 1 chr17:25902295-25902375 ( 52) CCTCCCCC 1 chrX:40430592-40430672 ( 62) CCTCCCCC 1 chrX:109244159-109244239 ( 68) CCTCCCCC 1 chr2:47525391-47525471 ( 46) CCACCTCT 1 chr7:32720586-32720666 ( 71) CCACCTCT 1 chr6:2980528-2980608 ( 42) CCACCTCT 1 chr17:47866525-47866605 ( 61) CCTCCTCT 1 chr19:18315099-18315179 ( 58) CCTCCTCT 1 chr6:147208413-147208493 ( 50) CCTCCTCT 1 chr17:45177660-45177740 ( 12) CCTCCTCT 1 chr1:110406925-110407005 ( 63) CCTCCTCT 1 chr19:36505179-36505259 ( 60) CCGCCCCC 1 chr19:12551916-12551996 ( 56) CCGCCCCC 1 chr1:38397515-38397595 ( 10) CCGCCCCC 1 chr11:75526128-75526208 ( 62) CCGCCCCC 1 chr19:11457040-11457120 ( 24) CCGCCCCC 1 chr7:138043973-138044053 ( 35) CCACCCTT 1 chr12:107504010-10750409 ( 70) CCACCCTT 1 chr1:153895564-153895644 ( 21) CCACCCTT 1 chr6:110939213-110939293 ( 64) CCACCCTT 1 chr11:61872785-61872865 ( 55) CCACCCTT 1 chr19:4472044-4472124 ( 54) CCTCCCTT 1 chr18:14132482-14132562 ( 17) CCACCCCA 1 chr6:32143925-32144005 ( 49) CCTCCCCA 1 chr20:23331245-23331325 ( 72) CCGCCTCT 1 chr1:9834928-9835008 ( 63) CCTCCCCA 1 chr17:58755070-58755150 ( 9) CCGCCTCT 1 chr13:111368106-11136818 ( 21) CCTCCCCA 1 chr11:67798024-67798104 ( 16) CCGCCTCT 1 chr17:80325857-80325937 ( 17) CCTCCCCA 1 chr22:39101518-39101598 ( 12) CCGCCTCT 1 chr2:73460447-73460527 ( 28) CCGCCTCT 1 chr15:75744351-75744431 ( 69) CTACCCCT 1 chr15:45876045-45876125 ( 56) CTTCCCCT 1 chr17:46902915-46902995 ( 71) CTTCCCCT 1 chr2:62932643-62932723 ( 39) CCACCTCC 1 chr14:96001165-96001245 ( 57) CCACCTCC 1 chr22:36784199-36784279 ( 55) CCACCTCC 1 chr5:176853340-176853420 ( 35) CCACCTCC 1 chr19:3971235-3971315 ( 39) CCATCCCT 1 chr1:113932878-113932958 ( 13) CCTCCTCC 1 chr3:45103661-45103741 ( 68) CCATCCCT 1 chr20:40247074-40247154 ( 4) CCTTCCCT 1 chr22:29548971-29549051 ( 65) CCTTCCCT 1 chr7:23053770-23053850 ( 23) CCGCCCCA 1 chr12:27676968-27677048 ( 50) CCGCCCCA 1 chr13:20437813-20437893 ( 16) CCACCCTC 1 chr20:3869856-3869936 ( 4) CCACCCTC 1 chr4:123828134-123828214 ( 24) CTGCCCCT 1 chr5:132308014-132308094 ( 50) CTGCCCCT 1 chr9:115308591-115308671 ( 38) CTGCCCCT 1 chr19:36248878-36248958 ( 63) CCTCCCTC 1 chr11:118583485-11858356 ( 70) CCTCCCTC 1 chr6:151550607-151550687 ( 11) CCACACCT 1 chr19:12405705-12405785 ( 42) CCGCCTCC 1 chr19:19496438-19496518 ( 60) CCACACCT 1 chr21:47604561-47604641 ( 40) CCACACCT 1 chr10:101380297-10138037 ( 66) CCACCTTT 1 chr15:101137166-10113724 ( 21) CCACCCAT 1 chr20:2506433-2506513 ( 63) CTTCCCCC 1 chr2:238872952-238873032 ( 63) CCTCCCAT 1 chr2:88927166-88927246 ( 20) CCTTCCCC 1 chr13:20532753-20532833 ( 38) CCTTCCCC 1 chr17:21837441-21837521 ( 59) CCTCCCTA 1 chr19:50878202-50878282 ( 16) CTACCCTT 1 chr9:35072752-35072832 ( 21) CCGCCTCA 1 chr7:73574703-73574783 ( 47) CTACCCCA 1 chr17:60711471-60711551 ( 50) CTTCCCTT 1 chr7:112579940-112580020 ( 7) CCTCACCC 1 chr10:42863505-42863585 ( 33) CCGTCCCC 1 chr4:175204382-175204462 ( 9) CCACCACT 1 chr14:94492588-94492668 ( 35) CCACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.92472 E= 3.7e-058 -1353 191 -1353 -1353 -1353 178 -1353 -148 82 -1353 -28 66 -1353 182 -1353 -199 -276 186 -1353 -1353 -476 161 -1353 -41 -318 168 -1353 -100 -144 -17 -1353 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 3.7e-058 0.000000 1.000000 0.000000 0.000000 0.000000 0.915254 0.000000 0.084746 0.406780 0.000000 0.220339 0.372881 0.000000 0.940678 0.000000 0.059322 0.033898 0.966102 0.000000 0.000000 0.008475 0.813559 0.000000 0.177966 0.025424 0.855932 0.000000 0.118644 0.084746 0.237288 0.000000 0.677966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCDCCCCT MEME-5 regular expression -------------------------------------------------------------------------------- CC[ATG]CCCC[TC] -------------------------------------------------------------------------------- Time 17.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:206138146-206138226 1.47e-01 80 chr7:130756966-130757046 6.79e-10 7_[+4(6.11e-05)]_9_[+3(3.29e-05)]_5_\ [+5(1.93e-05)]_1_[+1(1.50e-05)]_3_[+2(1.15e-05)]_3_[+5(1.93e-05)]_4 chr9:115308591-115308671 1.15e-06 25_[+1(8.63e-05)]_13_[+1(5.93e-05)]_\ 3_[+2(3.51e-05)]_15 chr10:104261964-10426204 1.02e-01 80 chr6:15896078-15896158 4.17e-07 15_[+2(2.49e-05)]_1_[+3(1.55e-05)]_\ 14_[+1(1.50e-05)]_26 chr1:143913394-143913474 3.00e-01 80 chr7:32674711-32674791 1.36e-02 7_[+1(5.93e-05)]_21_[+1(5.93e-05)]_\ 36 chr22:37172256-37172336 1.24e-01 80 chr11:118583485-11858356 5.52e-08 21_[+2(2.49e-05)]_10_[+4(1.97e-05)]_\ 5_[+1(3.18e-05)]_20 chrX:109244159-109244239 5.57e-08 6_[+4(1.97e-05)]_5_[+2(2.49e-05)]_1_\ [+3(1.55e-05)]_1_[+4(1.97e-05)]_35 chr10:94589711-94589791 1.42e-09 7_[+4(6.11e-05)]_9_[+3(1.55e-05)]_5_\ [+5(1.93e-05)]_1_[+1(7.38e-05)]_3_[+2(1.15e-05)]_3_[+5(1.93e-05)]_4 chr17:44302765-44302845 6.12e-01 80 chr2:71454308-71454388 2.12e-01 80 chr4:48782458-48782538 7.31e-01 80 chr11:76622253-76622333 1.12e-06 35_[+2(5.82e-05)]_2_[+1(4.64e-05)]_\ [+4(4.19e-05)]_5_[+1(1.50e-05)]_6 chr1:120838592-120838672 2.34e-01 80 chr2:106084663-106084743 1.22e-06 16_[+1(7.38e-05)]_3_[+2(1.15e-05)]_\ 3_[+5(1.93e-05)]_34 chrX:46988611-46988691 8.68e-01 80 chr17:46902915-46902995 7.14e-09 9_[+4(1.97e-05)]_5_[+2(2.49e-05)]_1_\ [+3(4.63e-05)]_1_[+4(1.97e-05)]_5_[+1(1.50e-05)]_19 chr14:103893961-10389404 1.60e-06 4_[+3(1.55e-05)]_14_[+1(1.50e-05)]_\ 9_[+5(3.92e-05)]_29 chr20:45035308-45035388 2.47e-02 61_[+4(4.19e-05)]_11 chr19:11457040-11457120 6.83e-02 80 chr7:100825860-100825940 1.15e-01 48_[+5(3.92e-05)]_24 chr16:57769535-57769615 2.02e-02 80 chr1:25757185-25757265 1.07e-02 47_[+4(4.19e-05)]_25 chr10:45906433-45906513 7.55e-07 32_[+2(2.49e-05)]_1_[+3(7.46e-05)]_\ 1_[+4(1.97e-05)]_5_[+1(4.64e-05)]_9 chr2:136288814-136288894 6.60e-02 80 chr11:107798899-10779897 2.31e-01 80 chr15:45876045-45876125 5.32e-09 7_[+2(2.49e-05)]_1_[+3(3.29e-05)]_1_\ [+4(1.97e-05)]_5_[+1(1.50e-05)]_34 chr19:36193342-36193422 9.38e-01 80 chr1:61543725-61543805 6.97e-01 80 chr1:27354620-27354700 3.03e-04 37_[+5(1.93e-05)]_35 chr7:12787544-12787624 9.37e-07 8_[+2(2.49e-05)]_2_[+1(3.18e-05)]_\ 13_[+1(7.38e-05)]_9_[+5(3.92e-05)]_16 chr8:41316022-41316102 3.72e-09 10_[+4(6.11e-05)]_10_[+1(4.64e-05)]_\ 4_[+5(3.92e-05)]_12_[+2(1.15e-05)]_3_[+5(1.93e-05)]_1 chr15:40389440-40389520 9.93e-01 80 chr11:61872785-61872865 2.60e-07 10_[+3(1.55e-05)]_14_[+1(1.50e-05)]_\ 3_[+2(1.15e-05)]_29 chr8:145159235-145159315 4.71e-01 80 chr12:83590586-83590666 5.60e-05 4_[+2(5.82e-05)]_2_[+1(1.50e-05)]_\ 58 chr17:21837441-21837521 3.78e-01 80 chr17:60711471-60711551 1.51e-08 [+2(2.49e-05)]_1_[+3(1.55e-05)]_1_\ [+4(1.97e-05)]_5_[+1(3.18e-05)]_41 chr7:73574703-73574783 2.06e-08 16_[+4(6.11e-05)]_9_[+3(3.29e-05)]_\ 14_[+1(1.50e-05)]_3_[+2(1.15e-05)]_6 chr5:168008264-168008344 1.49e-07 24_[+4(6.11e-05)]_9_[+3(1.55e-05)]_\ 5_[+5(6.16e-05)]_1_[+1(1.50e-05)]_9 chr4:52709125-52709205 1.97e-01 80 chr11:44552072-44552152 1.25e-05 27_[+2(2.49e-05)]_23_[+1(4.64e-05)]_\ 14 chr2:74685564-74685644 6.03e-01 80 chr14:78083250-78083330 8.28e-02 80 chr14:73925373-73925453 1.27e-01 13_[+5(6.16e-05)]_59 chr1:1070855-1070935 2.52e-04 36_[+3(1.55e-05)]_14_[+1(7.38e-05)]_\ 14 chr21:47604561-47604641 6.63e-01 80 chr22:38054396-38054476 8.64e-01 80 chr15:75744123-75744203 4.32e-03 37_[+5(6.16e-05)]_15_[+4(6.11e-05)]_\ 12 chr1:236515164-236515244 1.34e-05 17_[+2(8.40e-05)]_2_[+1(1.50e-05)]_\ 45 chr19:2375513-2375593 1.25e-01 35_[+4(1.97e-05)]_37 chr14:70163718-70163798 3.41e-06 42_[+1(4.64e-05)]_[+4(1.97e-05)]_4_\ [+1(1.50e-05)]_10 chr22:40440656-40440736 1.70e-01 20_[+4(4.19e-05)]_52 chr5:132308014-132308094 1.53e-08 36_[+3(1.55e-05)]_14_[+1(1.50e-05)]_\ 3_[+2(1.15e-05)]_3 chr1:38397719-38397799 1.85e-01 80 chr1:110406925-110407005 1.52e-08 14_[+2(5.82e-05)]_1_[+3(4.63e-05)]_\ 1_[+4(1.97e-05)]_5_[+1(3.18e-05)]_27 chr20:2506433-2506513 1.37e-07 1_[+4(1.97e-05)]_15_[+1(4.64e-05)]_\ [+4(1.97e-05)]_5_[+1(1.50e-05)]_27 chr22:29999335-29999415 2.22e-01 80 chr6:2980528-2980608 3.42e-09 11_[+4(6.11e-05)]_9_[+3(1.55e-05)]_\ 14_[+1(3.18e-05)]_3_[+2(1.15e-05)]_11 chr6:110939413-110939493 2.99e-01 80 chr17:39943146-39943226 5.25e-01 80 chr7:150019648-150019728 3.73e-07 12_[+3(3.29e-05)]_5_[+5(1.93e-05)]_\ 11_[+2(1.15e-05)]_28 chr19:13906038-13906118 9.09e-01 80 chr6:110939213-110939293 7.23e-08 20_[+1(8.63e-05)]_13_[+1(4.64e-05)]_\ 3_[+2(1.15e-05)]_20 chr17:8534202-8534282 3.83e-02 80 chr17:74597819-74597899 4.29e-04 39_[+1(4.64e-05)]_33 chr2:73460447-73460527 1.88e-01 80 chr1:151254564-151254644 5.03e-01 80 chrX:49125694-49125774 1.46e-01 66_[+5(1.93e-05)]_6 chr22:39101518-39101598 1.84e-02 80 chr22:35696154-35696234 5.35e-01 80 chr2:74685365-74685445 8.57e-01 80 chr19:45394320-45394400 2.14e-02 80 chr14:104181860-10418194 3.60e-02 58_[+4(4.19e-05)]_14 chr17:4870673-4870753 5.10e-01 80 chr9:115308796-115308876 2.65e-01 80 chr10:29101071-29101151 1.45e-08 10_[+4(6.11e-05)]_9_[+3(1.55e-05)]_\ 5_[+5(1.93e-05)]_[+3(3.29e-05)]_24 chr11:68120251-68120331 5.96e-01 80 chr4:175204382-175204462 5.32e-01 80 chr11:75526128-75526208 2.51e-01 80 chrX:40430592-40430672 2.19e-09 [+4(1.97e-05)]_5_[+2(2.49e-05)]_1_\ [+3(3.29e-05)]_14_[+1(1.50e-05)]_28 chr18:12904133-12904213 1.43e-05 5_[+3(3.29e-05)]_14_[+1(1.50e-05)]_\ 3_[+2(8.40e-05)]_34 chr10:101380297-10138037 6.44e-01 80 chr9:138313384-138313464 1.33e-07 22_[+5(1.93e-05)]_1_[+1(1.50e-05)]_\ 3_[+2(1.15e-05)]_30 chr17:45177660-45177740 1.98e-01 80 chr3:45103661-45103741 1.62e-07 46_[+1(3.18e-05)]_2_[+2(1.15e-05)]_\ 16 chr8:98775213-98775293 3.94e-09 28_[+1(4.64e-05)]_4_[+5(1.93e-05)]_\ 1_[+1(1.50e-05)]_3_[+2(1.15e-05)]_3_[+5(1.93e-05)]_1 chr8:25315998-25316078 4.79e-01 80 chr4:185260667-185260747 1.22e-08 16_[+2(2.49e-05)]_1_[+3(4.63e-05)]_\ 14_[+1(1.50e-05)]_9_[+5(3.92e-05)]_8 chr19:19174482-19174562 2.40e-01 30_[+5(6.16e-05)]_42 chr7:32720586-32720666 5.87e-07 27_[+1(4.64e-05)]_13_[+1(7.38e-05)]_\ 3_[+2(1.15e-05)]_13 chr5:176853340-176853420 1.32e-01 80 chr1:38397515-38397595 3.88e-03 50_[+3(3.29e-05)]_22 chr17:74667882-74667962 5.87e-01 80 chr17:25902295-25902375 3.93e-07 12_[+3(1.55e-05)]_14_[+1(1.50e-05)]_\ 38 chr7:32945034-32945114 5.41e-04 7_[+3(4.63e-05)]_16_[+3(4.63e-05)]_\ 33_[+4(1.97e-05)] chr12:113658961-11365904 1.55e-01 80 chr2:26980878-26980958 3.04e-07 10_[+1(4.64e-05)]_[+4(4.19e-05)]_5_\ [+1(1.50e-05)]_41 chr19:54641276-54641356 7.85e-02 80 chr3:99495625-99495705 1.93e-09 4_[+4(1.97e-05)]_2_[+2(2.49e-05)]_1_\ [+3(1.55e-05)]_14_[+1(7.38e-05)]_9_[+5(3.92e-05)]_10 chr12:8179291-8179371 7.43e-01 80 chr11:67275738-67275818 7.24e-01 80 chr6:158100724-158100804 9.20e-01 80 chr3:114866242-114866322 2.97e-01 59_[+5(6.16e-05)]_13 chr1:23923792-23923872 1.05e-08 28_[+1(4.64e-05)]_4_[+5(1.93e-05)]_\ 1_[+1(7.38e-05)]_3_[+2(1.15e-05)]_12 chr1:22118074-22118154 1.89e-07 8_[+2(2.49e-05)]_23_[+1(7.38e-05)]_\ 9_[+5(3.92e-05)]_16 chr17:80325857-80325937 1.80e-01 80 chr17:43697609-43697689 9.11e-01 80 chr2:9309540-9309620 2.76e-07 12_[+2(2.49e-05)]_2_[+1(4.64e-05)]_\ 13_[+1(3.18e-05)]_29 chr16:20956634-20956714 4.02e-09 15_[+4(6.11e-05)]_22_[+5(1.93e-05)]_\ 1_[+1(3.18e-05)]_3_[+2(1.15e-05)]_7 chr11:277586-277666 1.16e-07 4_[+2(2.49e-05)]_2_[+1(4.64e-05)]_\ 30_[+5(3.92e-05)]_20 chr3:88108233-88108313 2.06e-02 80 chr15:101137166-10113724 1.11e-04 7_[+3(1.55e-05)]_14_[+1(1.50e-05)]_\ 43 chr2:238872952-238873032 7.43e-05 24_[+1(4.64e-05)]_13_[+1(1.50e-05)]_\ 27 chr19:12551916-12551996 1.81e-01 80 chr6:147208413-147208493 7.28e-08 11_[+1(4.64e-05)]_[+4(1.97e-05)]_53 chr10:70570299-70570379 2.55e-06 20_[+2(9.90e-05)]_2_[+1(4.64e-05)]_\ 13_[+1(4.64e-05)]_21 chr10:42863505-42863585 1.54e-01 80 chr1:113932878-113932958 2.72e-01 80 chr1:153895564-153895644 1.13e-02 80 chr8:71314382-71314462 5.95e-01 80 chr16:22385990-22386070 3.28e-01 80 chr14:23790493-23790573 5.27e-02 80 chr12:49504686-49504766 3.89e-02 80 chr9:37465733-37465813 9.73e-01 80 chr7:72298905-72298985 5.08e-02 80 chr19:36505179-36505259 7.08e-02 80 chr7:2884096-2884176 3.75e-01 80 chr12:32174025-32174105 2.27e-07 26_[+2(2.49e-05)]_1_[+3(1.55e-05)]_\ 1_[+4(1.97e-05)]_5_[+1(7.38e-05)]_15 chr3:129418241-129418321 1.06e-05 51_[+5(1.93e-05)]_21 chr2:44395511-44395591 1.78e-01 33_[+2(9.90e-05)]_39 chr12:122028204-12202828 1.73e-01 80 chr3:194489996-194490076 3.04e-03 11_[+5(1.93e-05)]_47_[+5(1.93e-05)]_\ 6 chr19:51161556-51161636 1.41e-01 1_[+4(4.19e-05)]_71 chr16:77224644-77224724 7.15e-01 80 chr7:32945239-32945319 9.72e-01 80 chr2:62081724-62081804 1.93e-01 80 chr3:113415656-113415736 4.72e-01 80 chr1:24742171-24742251 5.45e-01 80 chr5:32313307-32313387 2.08e-02 80 chr2:47525391-47525471 6.69e-07 33_[+1(4.64e-05)]_24_[+2(1.15e-05)]_\ 7 chr3:40393762-40393842 3.66e-07 5_[+1(4.64e-05)]_4_[+5(1.93e-05)]_\ 12_[+2(1.15e-05)]_3_[+5(1.93e-05)]_24 chr22:29548971-29549051 6.75e-09 16_[+2(2.49e-05)]_1_[+3(1.55e-05)]_\ 1_[+4(1.97e-05)]_5_[+1(3.18e-05)]_25 chr10:48402562-48402642 6.95e-04 30_[+1(4.64e-05)]_42 chr6:32146031-32146111 1.31e-01 66_[+5(6.16e-05)]_6 chr20:40247074-40247154 4.52e-01 80 chr2:65283357-65283437 1.48e-01 80 chrX:48539039-48539119 2.97e-06 45_[+1(3.18e-05)]_4_[+5(1.93e-05)]_\ 1_[+1(1.50e-05)]_6 chr19:18315099-18315179 5.27e-02 80 chr18:14132482-14132562 2.66e-01 80 chr9:35072752-35072832 6.20e-01 80 chr17:47270321-47270401 1.35e-01 53_[+4(4.19e-05)]_19 chr22:36784199-36784279 9.70e-02 80 chr11:35364915-35364995 4.22e-07 34_[+3(5.96e-05)]_14_[+1(4.64e-05)]_\ 3_[+2(1.15e-05)]_5 chr1:100001134-100001214 1.28e-08 30_[+3(1.55e-05)]_1_[+4(1.97e-05)]_\ 5_[+1(7.38e-05)]_9_[+5(3.92e-05)]_3 chr6:80247163-80247243 7.57e-01 80 chr11:67798024-67798104 9.05e-02 80 chr19:2945022-2945102 3.98e-01 80 chr16:30382110-30382190 2.07e-01 80 chr19:14228668-14228748 9.90e-01 80 chr4:123828134-123828214 1.02e-06 10_[+3(3.29e-05)]_14_[+1(1.50e-05)]_\ 3_[+2(1.15e-05)]_29 chr11:62521656-62521736 5.35e-02 17_[+5(3.92e-05)]_55 chr9:34989515-34989595 3.05e-03 58_[+4(4.19e-05)]_14 chr8:91592739-91592819 1.41e-04 63_[+1(4.64e-05)]_9 chr11:75401450-75401530 4.22e-07 33_[+3(5.96e-05)]_14_[+1(4.64e-05)]_\ 3_[+2(1.15e-05)]_6 chr14:96001165-96001245 5.04e-01 80 chr19:12847804-12847884 2.42e-01 80 chr5:180603379-180603459 3.75e-06 4_[+4(1.97e-05)]_15_[+1(4.64e-05)]_\ [+4(1.97e-05)]_37 chrX:49047652-49047732 8.13e-01 80 chr1:150669779-150669859 3.68e-01 80 chr2:62932643-62932723 1.88e-02 80 chr19:35656191-35656271 1.93e-09 6_[+4(1.97e-05)]_5_[+2(2.49e-05)]_1_\ [+3(1.55e-05)]_1_[+4(1.97e-05)]_5_[+1(7.38e-05)]_9_[+5(3.92e-05)]_5 chr1:159047049-159047129 1.29e-05 32_[+4(6.11e-05)]_4_[+3(1.55e-05)]_\ 14_[+1(3.18e-05)]_6 chr9:117319490-117319570 3.64e-09 2_[+2(2.49e-05)]_2_[+1(4.64e-05)]_\ [+4(1.97e-05)]_5_[+1(3.18e-05)]_9_[+5(3.92e-05)]_22 chr11:61407717-61407797 7.81e-09 36_[+1(4.64e-05)]_4_[+5(1.93e-05)]_\ [+3(1.55e-05)]_4_[+2(1.15e-05)]_4 chr19:42901174-42901254 1.35e-01 80 chr1:150601642-150601722 5.04e-01 80 chr5:125849857-125849937 3.73e-09 10_[+4(1.97e-05)]_5_[+2(2.49e-05)]_\ 10_[+4(1.97e-05)]_5_[+1(1.50e-05)]_9_[+5(3.92e-05)]_1 chr17:26235420-26235500 4.57e-06 43_[+3(1.55e-05)]_5_[+5(1.93e-05)]_\ 1_[+1(4.64e-05)]_7 chr11:63953423-63953503 5.21e-02 80 chr7:8008273-8008353 3.69e-01 80 chr8:27697279-27697359 3.60e-04 7_[+4(1.97e-05)]_65 chr18:71959283-71959363 4.99e-01 80 chr17:18086685-18086765 3.09e-01 80 chr19:36248878-36248958 2.51e-02 80 chr15:75744351-75744431 2.52e-01 80 chr4:124239-124319 9.06e-01 80 chr19:46087717-46087797 8.79e-01 80 chr7:157100640-157100720 4.78e-07 22_[+4(1.97e-05)]_5_[+2(2.49e-05)]_\ 23_[+1(1.50e-05)]_6 chr19:3971235-3971315 2.39e-01 80 chr17:46125532-46125612 2.03e-01 80 chr9:101614040-101614120 1.02e-05 33_[+2(2.49e-05)]_1_[+3(5.96e-05)]_\ 14_[+1(7.38e-05)]_8 chr14:94492588-94492668 3.56e-01 80 chr13:111368106-11136818 5.40e-01 80 chr17:47866525-47866605 3.18e-02 80 chr12:107504010-10750409 2.80e-08 25_[+3(1.55e-05)]_14_[+1(7.38e-05)]_\ 3_[+2(1.15e-05)]_14 chr9:135905957-135906037 2.44e-01 80 chr4:68587573-68587653 1.06e-04 42_[+3(1.55e-05)]_14_[+1(7.38e-05)]_\ 8 chr2:208637347-208637427 1.02e-08 38_[+3(3.29e-05)]_5_[+5(6.16e-05)]_\ 1_[+1(3.18e-05)]_2_[+2(1.15e-05)]_2 chr17:79196835-79196915 9.16e-02 80 chr19:19496438-19496518 2.78e-01 80 chr11:68227946-68228026 2.05e-01 80 chr19:50878202-50878282 3.15e-06 2_[+3(5.96e-05)]_14_[+1(1.50e-05)]_\ 3_[+2(1.15e-05)]_37 chr19:12405705-12405785 1.71e-01 80 chr20:3869856-3869936 1.63e-01 80 chr13:20532753-20532833 6.28e-02 80 chr1:6845250-6845330 1.43e-02 80 chr17:61627657-61627737 9.06e-01 80 chr16:53537354-53537434 3.33e-03 18_[+5(3.92e-05)]_54 chr7:112579940-112580020 2.20e-01 80 chr17:58755070-58755150 4.32e-02 80 chr9:139780765-139780845 9.99e-01 80 chr12:127392642-12739272 9.14e-06 27_[+2(2.49e-05)]_2_[+1(4.64e-05)]_\ 13_[+1(1.50e-05)]_14 chr2:208663492-208663572 1.39e-09 11_[+4(6.11e-05)]_10_[+1(4.64e-05)]_\ 4_[+5(1.93e-05)]_1_[+1(1.50e-05)]_3_[+2(1.15e-05)]_11 chr7:100184130-100184210 8.79e-01 80 chr12:68726214-68726294 1.22e-01 80 chr1:9834928-9835008 1.34e-07 13_[+2(2.49e-05)]_2_[+1(3.18e-05)]_\ 13_[+1(3.18e-05)]_28 chr19:46498521-46498601 2.69e-03 80 chr6:151550607-151550687 1.09e-03 19_[+1(7.38e-05)]_53 chr20:23331245-23331325 1.10e-04 42_[+3(1.55e-05)]_9_[+1(3.18e-05)]_\ 13 chr7:138043973-138044053 2.21e-08 21_[+3(1.55e-05)]_14_[+1(1.50e-05)]_\ 3_[+2(1.15e-05)]_18 chr19:4472044-4472124 2.27e-01 80 chr12:27676968-27677048 3.94e-01 80 chr20:2506642-2506722 7.75e-01 80 chr16:639761-639841 4.40e-02 63_[+4(4.19e-05)]_9 chr16:67217568-67217648 4.46e-01 80 chr19:45873896-45873976 2.59e-01 80 chr2:97587929-97588009 3.04e-05 23_[+3(1.55e-05)]_5_[+5(1.93e-05)]_\ 1_[+1(7.38e-05)]_27 chr6:32143925-32144005 2.48e-03 28_[+1(7.38e-05)]_44 chr2:88927166-88927246 9.11e-05 61_[+1(3.18e-05)]_11 chr13:20437813-20437893 5.21e-01 80 chr3:12824099-12824179 5.50e-05 15_[+3(1.55e-05)]_1_[+4(4.19e-05)]_\ 5_[+1(7.38e-05)]_35 chr12:53473212-53473292 8.39e-01 80 chr14:21737702-21737782 6.84e-01 80 chr1:12717663-12717743 1.48e-06 18_[+4(4.19e-05)]_5_[+2(5.82e-05)]_\ 2_[+1(1.50e-05)]_31 chr8:68279265-68279345 1.45e-05 10_[+5(1.93e-05)]_1_[+1(7.38e-05)]_\ 53 chr19:39340966-39341046 9.22e-01 80 chr7:23053770-23053850 3.55e-01 80 chr6:34499631-34499711 1.41e-01 51_[+4(4.19e-05)]_21 chr5:159546597-159546677 3.68e-01 80 chr11:59383424-59383504 4.84e-01 80 chr22:41032803-41032883 3.34e-01 80 chr19:6425257-6425337 3.25e-02 80 chr19:1041087-1041167 1.79e-01 80 chr16:84538262-84538342 1.83e-03 5_[+5(6.16e-05)]_67 chr16:1728149-1728229 2.72e-01 23_[+4(4.19e-05)]_49 chr5:141826406-141826486 3.07e-07 29_[+2(2.49e-05)]_1_[+3(1.55e-05)]_\ 15_[+1(1.50e-05)]_11 chr1:117664512-117664592 3.47e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************