******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/DACH1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:150404611-150404691 1.0000 80 chr15:28531334-28531414 1.0000 80 chr2:239790064-239790144 1.0000 80 chr8:143774080-143774160 1.0000 80 chr15:96285644-96285724 1.0000 80 chr18:2545285-2545365 1.0000 80 chr11:59965077-59965157 1.0000 80 chr22:21579325-21579405 1.0000 80 chr2:119569255-119569335 1.0000 80 chr4:99696982-99697062 1.0000 80 chr1:192091965-192092045 1.0000 80 chr3:139587793-139587873 1.0000 80 chr1:53119878-53119958 1.0000 80 chr1:186829276-186829356 1.0000 80 chr11:66715463-66715543 1.0000 80 chr7:97584851-97584931 1.0000 80 chr7:156318051-156318131 1.0000 80 chr8:92016178-92016258 1.0000 80 chr11:34986324-34986404 1.0000 80 chr1:18799079-18799159 1.0000 80 chr8:130579117-130579197 1.0000 80 chr15:50481118-50481198 1.0000 80 chr11:71322409-71322489 1.0000 80 chr3:14134118-14134198 1.0000 80 chr12:441889-441969 1.0000 80 chr11:67750115-67750195 1.0000 80 chr6:27041366-27041446 1.0000 80 chr11:117697710-11769779 1.0000 80 chr4:123917664-123917744 1.0000 80 chr6:150824353-150824433 1.0000 80 chr1:155077755-155077835 1.0000 80 chr5:180203566-180203646 1.0000 80 chr7:103502887-103502967 1.0000 80 chr1:34256330-34256410 1.0000 80 chr10:94107198-94107278 1.0000 80 chr2:13602746-13602826 1.0000 80 chr4:74114292-74114372 1.0000 80 chr10:15037043-15037123 1.0000 80 chr2:239788823-239788903 1.0000 80 chr11:69793276-69793356 1.0000 80 chr17:60964936-60965016 1.0000 80 chr7:104566795-104566875 1.0000 80 chr5:169176458-169176538 1.0000 80 chr7:139508983-139509063 1.0000 80 chr1:111535094-111535174 1.0000 80 chr19:40673582-40673662 1.0000 80 chr11:16612851-16612931 1.0000 80 chr16:74896777-74896857 1.0000 80 chr18:29049751-29049831 1.0000 80 chr7:30075994-30076074 1.0000 80 chr12:125351242-12535132 1.0000 80 chr17:32254930-32255010 1.0000 80 chr1:146582175-146582255 1.0000 80 chr6:161640857-161640937 1.0000 80 chr1:8591119-8591199 1.0000 80 chr1:166686018-166686098 1.0000 80 chr10:75743275-75743355 1.0000 80 chr1:45850044-45850124 1.0000 80 chr9:132528223-132528303 1.0000 80 chr21:22528877-22528957 1.0000 80 chr11:63733659-63733739 1.0000 80 chr7:132279661-132279741 1.0000 80 chr4:4136244-4136324 1.0000 80 chr19:41433631-41433711 1.0000 80 chr2:71360903-71360983 1.0000 80 chr7:143723734-143723814 1.0000 80 chr13:41998968-41999048 1.0000 80 chr10:76555049-76555129 1.0000 80 chr8:13084648-13084728 1.0000 80 chr15:85421105-85421185 1.0000 80 chr8:136913359-136913439 1.0000 80 chr3:15071291-15071371 1.0000 80 chr18:49180029-49180109 1.0000 80 chr3:115067957-115068037 1.0000 80 chr7:145724495-145724575 1.0000 80 chr19:32938644-32938724 1.0000 80 chr1:154483928-154484008 1.0000 80 chr1:174716887-174716967 1.0000 80 chr7:6886176-6886256 1.0000 80 chr17:8291418-8291498 1.0000 80 chr9:37164446-37164526 1.0000 80 chr15:63801429-63801509 1.0000 80 chr9:101591429-101591509 1.0000 80 chr9:104982-105062 1.0000 80 chr6:125395398-125395478 1.0000 80 chr16:50304063-50304143 1.0000 80 chr6:162499856-162499936 1.0000 80 chr1:173364072-173364152 1.0000 80 chr7:111941045-111941125 1.0000 80 chr9:122992662-122992742 1.0000 80 chr17:8031580-8031660 1.0000 80 chr19:40942019-40942099 1.0000 80 chr2:238826465-238826545 1.0000 80 chr7:105431057-105431137 1.0000 80 chr16:69653577-69653657 1.0000 80 chrX:129510210-129510290 1.0000 80 chr3:8714939-8715019 1.0000 80 chr6:12175361-12175441 1.0000 80 chr1:198611512-198611592 1.0000 80 chr1:101369482-101369562 1.0000 80 chr11:46281057-46281137 1.0000 80 chr20:52681635-52681715 1.0000 80 chr11:61561085-61561165 1.0000 80 chr1:46779278-46779358 1.0000 80 chr16:24530001-24530081 1.0000 80 chr6:27514460-27514540 1.0000 80 chrX:102614700-102614780 1.0000 80 chr4:4138507-4138587 1.0000 80 chr6:168195608-168195688 1.0000 80 chr2:234347378-234347458 1.0000 80 chr2:47833470-47833550 1.0000 80 chr2:171854545-171854625 1.0000 80 chr13:97905994-97906074 1.0000 80 chr1:12577636-12577716 1.0000 80 chr19:15681431-15681511 1.0000 80 chr6:130427311-130427391 1.0000 80 chr17:46613669-46613749 1.0000 80 chr2:185281392-185281472 1.0000 80 chr15:44539932-44540012 1.0000 80 chr10:15024865-15024945 1.0000 80 chr1:51998661-51998741 1.0000 80 chr19:16007000-16007080 1.0000 80 chr22:25849184-25849264 1.0000 80 chr17:35613717-35613797 1.0000 80 chr1:6859718-6859798 1.0000 80 chr11:75119031-75119111 1.0000 80 chr15:90196955-90197035 1.0000 80 chr8:91275540-91275620 1.0000 80 chr9:115236370-115236450 1.0000 80 chr12:8795493-8795573 1.0000 80 chr2:71247441-71247521 1.0000 80 chr1:52336438-52336518 1.0000 80 chr1:246419235-246419315 1.0000 80 chr8:129340533-129340613 1.0000 80 chr9:96731715-96731795 1.0000 80 chr2:158803835-158803915 1.0000 80 chr15:71741099-71741179 1.0000 80 chr6:150223032-150223112 1.0000 80 chr1:180428095-180428175 1.0000 80 chr5:73583135-73583215 1.0000 80 chr13:95942295-95942375 1.0000 80 chr8:6475367-6475447 1.0000 80 chr3:38339939-38340019 1.0000 80 chr9:114938732-114938812 1.0000 80 chr1:219589416-219589496 1.0000 80 chr12:96826728-96826808 1.0000 80 chr4:166430067-166430147 1.0000 80 chr2:113385400-113385480 1.0000 80 chr18:19703438-19703518 1.0000 80 chr8:29906821-29906901 1.0000 80 chr10:5477405-5477485 1.0000 80 chr7:130859738-130859818 1.0000 80 chr4:26265890-26265970 1.0000 80 chr22:36359444-36359524 1.0000 80 chr9:131951097-131951177 1.0000 80 chr1:226218742-226218822 1.0000 80 chr1:40648409-40648489 1.0000 80 chr16:67142563-67142643 1.0000 80 chr2:172058395-172058475 1.0000 80 chr2:159735876-159735956 1.0000 80 chr7:112774275-112774355 1.0000 80 chr1:198055635-198055715 1.0000 80 chr6:131700174-131700254 1.0000 80 chr4:119917006-119917086 1.0000 80 chr1:167963082-167963162 1.0000 80 chr15:84158575-84158655 1.0000 80 chr21:40825870-40825950 1.0000 80 chr4:26852910-26852990 1.0000 80 chr12:1534010-1534090 1.0000 80 chr7:121166486-121166566 1.0000 80 chr10:70512609-70512689 1.0000 80 chr1:93027147-93027227 1.0000 80 chr1:10280395-10280475 1.0000 80 chr1:249169074-249169154 1.0000 80 chr1:89949396-89949476 1.0000 80 chr14:96851236-96851316 1.0000 80 chr12:71020100-71020180 1.0000 80 chr11:34640142-34640222 1.0000 80 chr4:4166669-4166749 1.0000 80 chrX:46378633-46378713 1.0000 80 chr7:5630681-5630761 1.0000 80 chr8:116464142-116464222 1.0000 80 chr1:9836902-9836982 1.0000 80 chr18:9857628-9857708 1.0000 80 chr3:44439911-44439991 1.0000 80 chr1:176604019-176604099 1.0000 80 chr1:24153266-24153346 1.0000 80 chr15:40422486-40422566 1.0000 80 chr4:1409606-1409686 1.0000 80 chr7:2960297-2960377 1.0000 80 chr13:26823912-26823992 1.0000 80 chr7:97587527-97587607 1.0000 80 chr19:93751-93831 1.0000 80 chr6:68787707-68787787 1.0000 80 chr4:42374467-42374547 1.0000 80 chr1:226735522-226735602 1.0000 80 chr10:30480283-30480363 1.0000 80 chr1:32826438-32826518 1.0000 80 chr1:212464997-212465077 1.0000 80 chr6:135494546-135494626 1.0000 80 chr7:152389439-152389519 1.0000 80 chr12:112963358-11296343 1.0000 80 chr18:9641313-9641393 1.0000 80 chr10:29022345-29022425 1.0000 80 chr5:10452083-10452163 1.0000 80 chr9:98193693-98193773 1.0000 80 chr12:113933891-11393397 1.0000 80 chr7:16758031-16758111 1.0000 80 chr7:139305854-139305934 1.0000 80 chr10:71615245-71615325 1.0000 80 chr3:32165271-32165351 1.0000 80 chr10:74190853-74190933 1.0000 80 chr1:31755383-31755463 1.0000 80 chr10:58901627-58901707 1.0000 80 chr5:96219734-96219814 1.0000 80 chr14:97534821-97534901 1.0000 80 chr7:151901661-151901741 1.0000 80 chr8:38841437-38841517 1.0000 80 chr3:171094474-171094554 1.0000 80 chr1:158635986-158636066 1.0000 80 chr1:201320936-201321016 1.0000 80 chr1:41726605-41726685 1.0000 80 chr17:57834582-57834662 1.0000 80 chr16:13728236-13728316 1.0000 80 chr4:55437128-55437208 1.0000 80 chr2:71269534-71269614 1.0000 80 chr20:32657174-32657254 1.0000 80 chr7:129280404-129280484 1.0000 80 chr8:130221484-130221564 1.0000 80 chr10:15016591-15016671 1.0000 80 chr1:41817583-41817663 1.0000 80 chr4:8974532-8974612 1.0000 80 chr6:44308991-44309071 1.0000 80 chr10:48036084-48036164 1.0000 80 chr6:12995802-12995882 1.0000 80 chr7:98413083-98413163 1.0000 80 chr5:90496624-90496704 1.0000 80 chr3:99933187-99933267 1.0000 80 chr10:119416055-11941613 1.0000 80 chr5:68668380-68668460 1.0000 80 chr5:87584012-87584092 1.0000 80 chr20:46089378-46089458 1.0000 80 chr11:58444198-58444278 1.0000 80 chr19:52431267-52431347 1.0000 80 chr10:74659443-74659523 1.0000 80 chr15:102478933-10247901 1.0000 80 chr2:108348051-108348131 1.0000 80 chr12:129088922-12908900 1.0000 80 chr17:46965647-46965727 1.0000 80 chr17:5434469-5434549 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_DACH1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/DACH1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.363 C 0.135 G 0.139 T 0.363 Background letter frequencies (from file dataset with add-one prior applied): A 0.363 C 0.135 G 0.139 T 0.363 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCTATC MEME-1 width = 8 sites = 68 llr = 681 E-value = 5.1e-087 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::a:: pos.-specific C :::a:::a probability G :::::::: matrix T a:a:a:a: bits 2.9 * * 2.6 * * 2.3 * * 2.0 * * Relative 1.7 * * Entropy 1.4 ******** (14.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TATCTATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:5434469-5434549 64 4.17e-05 tctatctatc tatctatc tatctaatc chr17:46965647-46965727 66 4.17e-05 tctatctatc tatctatc tatAAAT chr19:52431267-52431347 1 4.17e-05 . tatctatc tatctatcta chr11:58444198-58444278 14 4.17e-05 tctatctatc tatctatc tatctatcta chr20:46089378-46089458 27 4.17e-05 tatcatctat tatctatc acttatctat chr10:119416055-11941613 1 4.17e-05 . tatctatc taattactta chr6:44308991-44309071 49 4.17e-05 tctatctatc tatctatc tatAATATGT chr1:41817583-41817663 8 4.17e-05 atctatc tatctatc tattcatcaa chr16:13728236-13728316 26 4.17e-05 TTATTTCTAA TATCTATC CATTAGaaat chr1:41726605-41726685 71 4.17e-05 tctatctatc tatctatc at chr1:201320936-201321016 6 4.17e-05 ctatc tatctatc tatctatcta chr14:97534821-97534901 23 4.17e-05 ctctctctct tatctatc tacctattta chr5:96219734-96219814 9 4.17e-05 TTTTtatc tatctatc tatctatcta chr1:31755383-31755463 52 4.17e-05 tctatctatc tatctatc tatctatcta chr10:74190853-74190933 2 4.17e-05 c tatctatc tatctatcta chr7:16758031-16758111 11 4.17e-05 tctatctatc tatctatc tatctatcta chr12:113933891-11393397 1 4.17e-05 . tatctatc tatctatcta chr9:98193693-98193773 14 4.17e-05 atctttcatc tatctatc tatctgtcta chr10:29022345-29022425 54 4.17e-05 tctatctatc tatctatc atctCATAAG chr12:112963358-11296343 1 4.17e-05 . tatctatc tatctatcta chr4:42374467-42374547 21 4.17e-05 tctatctatc tatctatc tatctatcta chr13:26823912-26823992 15 4.17e-05 tctatctatc tatctatc tatctatctg chr7:2960297-2960377 65 4.17e-05 tctatctatc tatctatc tatcttct chr1:24153266-24153346 1 4.17e-05 . tatctatc tatctatcta chr1:9836902-9836982 43 4.17e-05 tctatctatc tatctatc tatctatcta chr7:5630681-5630761 15 4.17e-05 tctatctatc tatctatc tatctatcta chr11:34640142-34640222 10 4.17e-05 ctatctatc tatctatc tatctatcta chr12:71020100-71020180 12 4.17e-05 tctatctatc tatctatc tatctatcta chr1:93027147-93027227 56 4.17e-05 tctatctatc tatctatc tatctatcta chr4:26852910-26852990 62 4.17e-05 tctatctatc tatctatc tatcatctat chr4:119917006-119917086 16 4.17e-05 ttatcttatc tatctatc tatctatcta chr6:131700174-131700254 67 4.17e-05 atctatccat tatctatc atctac chr2:172058395-172058475 53 4.17e-05 tctatctatc tatctatc atcaatcata chr16:67142563-67142643 3 4.17e-05 tc tatctatc tatctatcta chr9:131951097-131951177 10 4.17e-05 ctatctatc tatctatc tatctatcta chr18:19703438-19703518 60 4.17e-05 atctatcatc tatctatc tatctataca chr4:166430067-166430147 66 4.17e-05 atctatctat tatctatc tatctat chr3:38339939-38340019 3 4.17e-05 tc tatctatc tatctatcta chr8:6475367-6475447 62 4.17e-05 ctaatctatc tatctatc tatctatcta chr6:150223032-150223112 73 4.17e-05 tctatctatc tatctatc chr2:158803835-158803915 15 4.17e-05 tctatctgtc tatctatc tatctatcta chr8:129340533-129340613 58 4.17e-05 tctatctatc tatctatc tatctatcta chr9:115236370-115236450 66 4.17e-05 tctatctatc tatctatc tatctat chr8:91275540-91275620 14 4.17e-05 tctatctatc tatctatc tatctatcta chr22:25849184-25849264 49 4.17e-05 tctatctatc tatctatc tatAATATAT chr19:16007000-16007080 53 4.17e-05 gctatctatc tatctatc tatctatcta chr17:46613669-46613749 19 4.17e-05 aacaaaaaCT tatctatc tatctatcta chr19:15681431-15681511 15 4.17e-05 ctatctatcc tatctatc tatctatcta chr1:12577636-12577716 22 4.17e-05 cttatctatc tatctatc tatctatcta chr2:171854545-171854625 16 4.17e-05 tatctttatc tatctatc tatctatcta chr2:234347378-234347458 59 4.17e-05 tctatctatc tatctatc tatctatcta chrX:102614700-102614780 11 4.17e-05 tctatctatc tatctatc tatctatcta chr6:27514460-27514540 44 4.17e-05 tctatctatc tatctatc tatcGTAAAT chr20:52681635-52681715 6 4.17e-05 atgag tatctatc tatcatctat chr1:198611512-198611592 11 4.17e-05 tctatctatc tatctatc AGTTCTCCAT chr7:105431057-105431137 4 4.17e-05 atc tatctatc tatctatcta chr19:40942019-40942099 49 4.17e-05 tctatctatc tatctatc tatTTGGAGT chr9:101591429-101591509 15 4.17e-05 TTtatctatc tatctatc tatctatcta chr17:8291418-8291498 19 4.17e-05 actatctatg tatctatc tatctatcta chr7:143723734-143723814 3 4.17e-05 tc tatctatc tatctatcta chr11:63733659-63733739 2 4.17e-05 c tatctatc taatctatct chr1:45850044-45850124 20 4.17e-05 tctatctgtc tatctatc tatctatcta chr10:75743275-75743355 2 4.17e-05 c tatctatc tatctatcta chr1:8591119-8591199 2 4.17e-05 c tatctatc taactttcta chr1:34256330-34256410 73 4.17e-05 atctctctaa tatctatc chr7:103502887-103502967 4 4.17e-05 atc tatctatc tatctatcta chr6:27041366-27041446 60 4.17e-05 atctatcacc tatctatc tacctattta chr5:10452083-10452163 14 5.77e-05 tctatatctg tatctagc tatATGtttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:5434469-5434549 4.2e-05 63_[+1]_9 chr17:46965647-46965727 4.2e-05 65_[+1]_7 chr19:52431267-52431347 4.2e-05 [+1]_72 chr11:58444198-58444278 4.2e-05 13_[+1]_59 chr20:46089378-46089458 4.2e-05 26_[+1]_46 chr10:119416055-11941613 4.2e-05 [+1]_72 chr6:44308991-44309071 4.2e-05 48_[+1]_24 chr1:41817583-41817663 4.2e-05 7_[+1]_65 chr16:13728236-13728316 4.2e-05 25_[+1]_47 chr1:41726605-41726685 4.2e-05 70_[+1]_2 chr1:201320936-201321016 4.2e-05 5_[+1]_67 chr14:97534821-97534901 4.2e-05 22_[+1]_50 chr5:96219734-96219814 4.2e-05 8_[+1]_64 chr1:31755383-31755463 4.2e-05 51_[+1]_21 chr10:74190853-74190933 4.2e-05 1_[+1]_71 chr7:16758031-16758111 4.2e-05 10_[+1]_62 chr12:113933891-11393397 4.2e-05 [+1]_72 chr9:98193693-98193773 4.2e-05 13_[+1]_59 chr10:29022345-29022425 4.2e-05 53_[+1]_19 chr12:112963358-11296343 4.2e-05 [+1]_72 chr4:42374467-42374547 4.2e-05 20_[+1]_52 chr13:26823912-26823992 4.2e-05 14_[+1]_58 chr7:2960297-2960377 4.2e-05 64_[+1]_8 chr1:24153266-24153346 4.2e-05 [+1]_72 chr1:9836902-9836982 4.2e-05 42_[+1]_30 chr7:5630681-5630761 4.2e-05 14_[+1]_58 chr11:34640142-34640222 4.2e-05 9_[+1]_63 chr12:71020100-71020180 4.2e-05 11_[+1]_61 chr1:93027147-93027227 4.2e-05 55_[+1]_17 chr4:26852910-26852990 4.2e-05 61_[+1]_11 chr4:119917006-119917086 4.2e-05 15_[+1]_57 chr6:131700174-131700254 4.2e-05 66_[+1]_6 chr2:172058395-172058475 4.2e-05 52_[+1]_20 chr16:67142563-67142643 4.2e-05 2_[+1]_70 chr9:131951097-131951177 4.2e-05 9_[+1]_63 chr18:19703438-19703518 4.2e-05 59_[+1]_13 chr4:166430067-166430147 4.2e-05 65_[+1]_7 chr3:38339939-38340019 4.2e-05 2_[+1]_70 chr8:6475367-6475447 4.2e-05 61_[+1]_11 chr6:150223032-150223112 4.2e-05 72_[+1] chr2:158803835-158803915 4.2e-05 14_[+1]_58 chr8:129340533-129340613 4.2e-05 57_[+1]_15 chr9:115236370-115236450 4.2e-05 65_[+1]_7 chr8:91275540-91275620 4.2e-05 13_[+1]_59 chr22:25849184-25849264 4.2e-05 48_[+1]_24 chr19:16007000-16007080 4.2e-05 52_[+1]_20 chr17:46613669-46613749 4.2e-05 18_[+1]_54 chr19:15681431-15681511 4.2e-05 14_[+1]_58 chr1:12577636-12577716 4.2e-05 21_[+1]_51 chr2:171854545-171854625 4.2e-05 15_[+1]_57 chr2:234347378-234347458 4.2e-05 58_[+1]_14 chrX:102614700-102614780 4.2e-05 10_[+1]_62 chr6:27514460-27514540 4.2e-05 43_[+1]_29 chr20:52681635-52681715 4.2e-05 5_[+1]_67 chr1:198611512-198611592 4.2e-05 10_[+1]_62 chr7:105431057-105431137 4.2e-05 3_[+1]_69 chr19:40942019-40942099 4.2e-05 48_[+1]_24 chr9:101591429-101591509 4.2e-05 14_[+1]_58 chr17:8291418-8291498 4.2e-05 18_[+1]_54 chr7:143723734-143723814 4.2e-05 2_[+1]_70 chr11:63733659-63733739 4.2e-05 1_[+1]_71 chr1:45850044-45850124 4.2e-05 19_[+1]_53 chr10:75743275-75743355 4.2e-05 1_[+1]_71 chr1:8591119-8591199 4.2e-05 1_[+1]_71 chr1:34256330-34256410 4.2e-05 72_[+1] chr7:103502887-103502967 4.2e-05 3_[+1]_69 chr6:27041366-27041446 4.2e-05 59_[+1]_13 chr5:10452083-10452163 5.8e-05 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCTATC width=8 seqs=68 chr17:5434469-5434549 ( 64) TATCTATC 1 chr17:46965647-46965727 ( 66) TATCTATC 1 chr19:52431267-52431347 ( 1) TATCTATC 1 chr11:58444198-58444278 ( 14) TATCTATC 1 chr20:46089378-46089458 ( 27) TATCTATC 1 chr10:119416055-11941613 ( 1) TATCTATC 1 chr6:44308991-44309071 ( 49) TATCTATC 1 chr1:41817583-41817663 ( 8) TATCTATC 1 chr16:13728236-13728316 ( 26) TATCTATC 1 chr1:41726605-41726685 ( 71) TATCTATC 1 chr1:201320936-201321016 ( 6) TATCTATC 1 chr14:97534821-97534901 ( 23) TATCTATC 1 chr5:96219734-96219814 ( 9) TATCTATC 1 chr1:31755383-31755463 ( 52) TATCTATC 1 chr10:74190853-74190933 ( 2) TATCTATC 1 chr7:16758031-16758111 ( 11) TATCTATC 1 chr12:113933891-11393397 ( 1) TATCTATC 1 chr9:98193693-98193773 ( 14) TATCTATC 1 chr10:29022345-29022425 ( 54) TATCTATC 1 chr12:112963358-11296343 ( 1) TATCTATC 1 chr4:42374467-42374547 ( 21) TATCTATC 1 chr13:26823912-26823992 ( 15) TATCTATC 1 chr7:2960297-2960377 ( 65) TATCTATC 1 chr1:24153266-24153346 ( 1) TATCTATC 1 chr1:9836902-9836982 ( 43) TATCTATC 1 chr7:5630681-5630761 ( 15) TATCTATC 1 chr11:34640142-34640222 ( 10) TATCTATC 1 chr12:71020100-71020180 ( 12) TATCTATC 1 chr1:93027147-93027227 ( 56) TATCTATC 1 chr4:26852910-26852990 ( 62) TATCTATC 1 chr4:119917006-119917086 ( 16) TATCTATC 1 chr6:131700174-131700254 ( 67) TATCTATC 1 chr2:172058395-172058475 ( 53) TATCTATC 1 chr16:67142563-67142643 ( 3) TATCTATC 1 chr9:131951097-131951177 ( 10) TATCTATC 1 chr18:19703438-19703518 ( 60) TATCTATC 1 chr4:166430067-166430147 ( 66) TATCTATC 1 chr3:38339939-38340019 ( 3) TATCTATC 1 chr8:6475367-6475447 ( 62) TATCTATC 1 chr6:150223032-150223112 ( 73) TATCTATC 1 chr2:158803835-158803915 ( 15) TATCTATC 1 chr8:129340533-129340613 ( 58) TATCTATC 1 chr9:115236370-115236450 ( 66) TATCTATC 1 chr8:91275540-91275620 ( 14) TATCTATC 1 chr22:25849184-25849264 ( 49) TATCTATC 1 chr19:16007000-16007080 ( 53) TATCTATC 1 chr17:46613669-46613749 ( 19) TATCTATC 1 chr19:15681431-15681511 ( 15) TATCTATC 1 chr1:12577636-12577716 ( 22) TATCTATC 1 chr2:171854545-171854625 ( 16) TATCTATC 1 chr2:234347378-234347458 ( 59) TATCTATC 1 chrX:102614700-102614780 ( 11) TATCTATC 1 chr6:27514460-27514540 ( 44) TATCTATC 1 chr20:52681635-52681715 ( 6) TATCTATC 1 chr1:198611512-198611592 ( 11) TATCTATC 1 chr7:105431057-105431137 ( 4) TATCTATC 1 chr19:40942019-40942099 ( 49) TATCTATC 1 chr9:101591429-101591509 ( 15) TATCTATC 1 chr17:8291418-8291498 ( 19) TATCTATC 1 chr7:143723734-143723814 ( 3) TATCTATC 1 chr11:63733659-63733739 ( 2) TATCTATC 1 chr1:45850044-45850124 ( 20) TATCTATC 1 chr10:75743275-75743355 ( 2) TATCTATC 1 chr1:8591119-8591199 ( 2) TATCTATC 1 chr1:34256330-34256410 ( 73) TATCTATC 1 chr7:103502887-103502967 ( 4) TATCTATC 1 chr6:27041366-27041446 ( 60) TATCTATC 1 chr5:10452083-10452163 ( 14) TATCTAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85972 E= 5.1e-087 -1273 -1273 -1273 146 146 -1273 -1273 -1273 -1273 -1273 -1273 146 -1273 288 -1273 -1273 -1273 -1273 -1273 146 146 -1273 -1273 -1273 -1273 -1273 -323 144 -1273 288 -1273 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 5.1e-087 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.014706 0.985294 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCTATC MEME-1 regular expression -------------------------------------------------------------------------------- TATCTATC -------------------------------------------------------------------------------- Time 4.65 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAGAT MEME-2 width = 8 sites = 70 llr = 698 E-value = 7.6e-090 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:a:a:a: pos.-specific C :::::::: probability G :a:::a:: matrix T :::a:::a bits 2.9 * * 2.6 * * 2.3 * * 2.0 * * Relative 1.7 * * Entropy 1.4 ******** (14.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGATAGAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:129088922-12908900 50 4.42e-05 atagatagat agatagat agatagatag chr2:108348051-108348131 66 4.42e-05 gatagatgat agatagat agataga chr10:74659443-74659523 58 4.42e-05 atagatagat agatagat agatagatga chr5:87584012-87584092 61 4.42e-05 atagatagat agatagat aatagataga chr3:99933187-99933267 51 4.42e-05 atagatagat agatagat agatagatag chr7:98413083-98413163 71 4.42e-05 gacagatgat agatagat ag chr10:48036084-48036164 65 4.42e-05 gatgatagat agatagat agatggat chr8:130221484-130221564 64 4.42e-05 ataggtagat agatagat agatagata chr4:55437128-55437208 58 4.42e-05 atagatagat agatagat agatagttgt chr17:57834582-57834662 50 4.42e-05 atagatagat agatagat agatagatag chr3:171094474-171094554 73 4.42e-05 atagatagat agatagat chr7:151901661-151901741 53 4.42e-05 atagatagat agatagat agacagacag chr3:32165271-32165351 53 4.42e-05 atagatagat agatagat agacagacag chr18:9641313-9641393 67 4.42e-05 atagaaagat agatagat agatag chr7:152389439-152389519 52 4.42e-05 atagatagat agatagat agagaatgat chr6:135494546-135494626 59 4.42e-05 atagatacat agatagat acatagatag chr1:32826438-32826518 62 4.42e-05 gatagatgat agatagat aagatagata chr10:30480283-30480363 57 4.42e-05 atagatagat agatagat agatagatag chr1:176604019-176604099 66 4.42e-05 gatgataggt agatagat agataga chr3:44439911-44439991 64 4.42e-05 atagatagat agatagat agatagata chr18:9857628-9857708 59 4.42e-05 gatagatgat agatagat agatagatag chrX:46378633-46378713 58 4.42e-05 atagatagat agatagat aaagatagat chr1:249169074-249169154 65 4.42e-05 atagatagat agatagat agatagat chr1:10280395-10280475 72 4.42e-05 atagatagat agatagat a chr10:70512609-70512689 62 4.42e-05 atagatagat agatagat agatagatag chr12:1534010-1534090 56 4.42e-05 atagatagat agatagat agataATCTG chr15:84158575-84158655 58 4.42e-05 atagatagat agatagat aatagataga chr7:112774275-112774355 51 4.42e-05 atagatagat agatagat agatgagaga chr1:40648409-40648489 6 4.42e-05 tagac agatagat aggtagatag chr1:226218742-226218822 73 4.42e-05 atagatagat agatagat chr7:130859738-130859818 18 4.42e-05 atagatagat agatagat agatagggtg chr10:5477405-5477485 61 4.42e-05 atagatagat agatagat agatagatag chr2:113385400-113385480 57 4.42e-05 atagatagat agatagat ggatggatgg chr9:114938732-114938812 62 4.42e-05 atagatagat agatagat agatagatag chr13:95942295-95942375 65 4.42e-05 caaaaaaaat agatagat agatagat chr1:246419235-246419315 19 4.42e-05 atagatagat agatagat agatagatag chr15:44539932-44540012 50 4.42e-05 atagatagat agatagat gatagataga chr6:168195608-168195688 64 4.42e-05 gttagtaggt agatagat aacaggtta chr16:24530001-24530081 67 4.42e-05 atagatagat agatagat agataT chr1:46779278-46779358 49 4.42e-05 atagatagat agatagat agatagatag chr11:46281057-46281137 53 4.42e-05 atagatagat agatagat aTTGTTAATT chr2:238826465-238826545 63 4.42e-05 atagatagat agatagat agatagatag chr17:8031580-8031660 52 4.42e-05 gactctagat agatagat agatagatag chr9:122992662-122992742 60 4.42e-05 atagatagat agatagat agacagatag chr1:173364072-173364152 61 4.42e-05 acacatagat agatagat agatagatag chr16:50304063-50304143 65 4.42e-05 atagatagat agatagat agataaac chr6:125395398-125395478 67 4.42e-05 atagatagat agatagat agatag chr9:37164446-37164526 59 4.42e-05 tagacagaca agatagat agaCTCTGTC chr19:32938644-32938724 67 4.42e-05 tctcattcat agatagat agatta chr3:15071291-15071371 51 4.42e-05 atagatagat agatagat atagatagac chr15:85421105-85421185 23 4.42e-05 atagatagat agatagat agatagatag chr7:132279661-132279741 51 4.42e-05 atagatagat agatagat agataattga chr21:22528877-22528957 51 4.42e-05 atagatagat agatagat aATTGTAGAT chr9:132528223-132528303 52 4.42e-05 atagatagat agatagat agatagatag chr1:166686018-166686098 54 4.42e-05 atagatagat agatagat agatagatag chr6:161640857-161640937 20 4.42e-05 atagatagat agatagat agatagatag chr7:30075994-30076074 52 4.42e-05 atagatagat agatagat agatagatag chr11:16612851-16612931 53 4.42e-05 atagacagat agatagat agatagatag chr7:139508983-139509063 65 4.42e-05 atagatagat agatagat agatagat chr7:104566795-104566875 65 4.42e-05 atagatagat agatagat agataata chr10:94107198-94107278 67 4.42e-05 atagatagat agatagat agatag chr1:155077755-155077835 54 4.42e-05 atagatagat agatagat agatagatag chr4:123917664-123917744 70 4.42e-05 gcagatagat agatagat aga chr15:50481118-50481198 52 4.42e-05 gtagatagat agatagat aaatagatag chr8:130579117-130579197 62 4.42e-05 atagatagat agatagat agatagatag chr8:92016178-92016258 55 4.42e-05 atagatagat agatagat gaaatagata chr11:66715463-66715543 57 4.42e-05 atagatagat agatagat agatagatat chr1:53119878-53119958 57 4.42e-05 atagatagac agatagat agatagatag chr22:21579325-21579405 65 4.42e-05 gatagatgat agatagat agatagat chr11:117697710-11769779 63 6.11e-05 AGGCACCAAC agatggat ggatagatag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:129088922-12908900 4.4e-05 49_[+2]_23 chr2:108348051-108348131 4.4e-05 65_[+2]_7 chr10:74659443-74659523 4.4e-05 57_[+2]_15 chr5:87584012-87584092 4.4e-05 60_[+2]_12 chr3:99933187-99933267 4.4e-05 50_[+2]_22 chr7:98413083-98413163 4.4e-05 70_[+2]_2 chr10:48036084-48036164 4.4e-05 64_[+2]_8 chr8:130221484-130221564 4.4e-05 63_[+2]_9 chr4:55437128-55437208 4.4e-05 57_[+2]_15 chr17:57834582-57834662 4.4e-05 49_[+2]_23 chr3:171094474-171094554 4.4e-05 72_[+2] chr7:151901661-151901741 4.4e-05 52_[+2]_20 chr3:32165271-32165351 4.4e-05 52_[+2]_20 chr18:9641313-9641393 4.4e-05 66_[+2]_6 chr7:152389439-152389519 4.4e-05 51_[+2]_21 chr6:135494546-135494626 4.4e-05 58_[+2]_14 chr1:32826438-32826518 4.4e-05 61_[+2]_11 chr10:30480283-30480363 4.4e-05 56_[+2]_16 chr1:176604019-176604099 4.4e-05 65_[+2]_7 chr3:44439911-44439991 4.4e-05 63_[+2]_9 chr18:9857628-9857708 4.4e-05 58_[+2]_14 chrX:46378633-46378713 4.4e-05 57_[+2]_15 chr1:249169074-249169154 4.4e-05 64_[+2]_8 chr1:10280395-10280475 4.4e-05 71_[+2]_1 chr10:70512609-70512689 4.4e-05 61_[+2]_11 chr12:1534010-1534090 4.4e-05 55_[+2]_17 chr15:84158575-84158655 4.4e-05 57_[+2]_15 chr7:112774275-112774355 4.4e-05 50_[+2]_22 chr1:40648409-40648489 4.4e-05 5_[+2]_67 chr1:226218742-226218822 4.4e-05 72_[+2] chr7:130859738-130859818 4.4e-05 17_[+2]_55 chr10:5477405-5477485 4.4e-05 60_[+2]_12 chr2:113385400-113385480 4.4e-05 56_[+2]_16 chr9:114938732-114938812 4.4e-05 61_[+2]_11 chr13:95942295-95942375 4.4e-05 64_[+2]_8 chr1:246419235-246419315 4.4e-05 18_[+2]_54 chr15:44539932-44540012 4.4e-05 49_[+2]_23 chr6:168195608-168195688 4.4e-05 63_[+2]_9 chr16:24530001-24530081 4.4e-05 66_[+2]_6 chr1:46779278-46779358 4.4e-05 48_[+2]_24 chr11:46281057-46281137 4.4e-05 52_[+2]_20 chr2:238826465-238826545 4.4e-05 62_[+2]_10 chr17:8031580-8031660 4.4e-05 51_[+2]_21 chr9:122992662-122992742 4.4e-05 59_[+2]_13 chr1:173364072-173364152 4.4e-05 60_[+2]_12 chr16:50304063-50304143 4.4e-05 64_[+2]_8 chr6:125395398-125395478 4.4e-05 66_[+2]_6 chr9:37164446-37164526 4.4e-05 58_[+2]_14 chr19:32938644-32938724 4.4e-05 66_[+2]_6 chr3:15071291-15071371 4.4e-05 50_[+2]_22 chr15:85421105-85421185 4.4e-05 22_[+2]_50 chr7:132279661-132279741 4.4e-05 50_[+2]_22 chr21:22528877-22528957 4.4e-05 50_[+2]_22 chr9:132528223-132528303 4.4e-05 51_[+2]_21 chr1:166686018-166686098 4.4e-05 53_[+2]_19 chr6:161640857-161640937 4.4e-05 19_[+2]_53 chr7:30075994-30076074 4.4e-05 51_[+2]_21 chr11:16612851-16612931 4.4e-05 52_[+2]_20 chr7:139508983-139509063 4.4e-05 64_[+2]_8 chr7:104566795-104566875 4.4e-05 64_[+2]_8 chr10:94107198-94107278 4.4e-05 66_[+2]_6 chr1:155077755-155077835 4.4e-05 53_[+2]_19 chr4:123917664-123917744 4.4e-05 69_[+2]_3 chr15:50481118-50481198 4.4e-05 51_[+2]_21 chr8:130579117-130579197 4.4e-05 61_[+2]_11 chr8:92016178-92016258 4.4e-05 54_[+2]_18 chr11:66715463-66715543 4.4e-05 56_[+2]_16 chr1:53119878-53119958 4.4e-05 56_[+2]_16 chr22:21579325-21579405 4.4e-05 64_[+2]_8 chr11:117697710-11769779 6.1e-05 62_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAGAT width=8 seqs=70 chr12:129088922-12908900 ( 50) AGATAGAT 1 chr2:108348051-108348131 ( 66) AGATAGAT 1 chr10:74659443-74659523 ( 58) AGATAGAT 1 chr5:87584012-87584092 ( 61) AGATAGAT 1 chr3:99933187-99933267 ( 51) AGATAGAT 1 chr7:98413083-98413163 ( 71) AGATAGAT 1 chr10:48036084-48036164 ( 65) AGATAGAT 1 chr8:130221484-130221564 ( 64) AGATAGAT 1 chr4:55437128-55437208 ( 58) AGATAGAT 1 chr17:57834582-57834662 ( 50) AGATAGAT 1 chr3:171094474-171094554 ( 73) AGATAGAT 1 chr7:151901661-151901741 ( 53) AGATAGAT 1 chr3:32165271-32165351 ( 53) AGATAGAT 1 chr18:9641313-9641393 ( 67) AGATAGAT 1 chr7:152389439-152389519 ( 52) AGATAGAT 1 chr6:135494546-135494626 ( 59) AGATAGAT 1 chr1:32826438-32826518 ( 62) AGATAGAT 1 chr10:30480283-30480363 ( 57) AGATAGAT 1 chr1:176604019-176604099 ( 66) AGATAGAT 1 chr3:44439911-44439991 ( 64) AGATAGAT 1 chr18:9857628-9857708 ( 59) AGATAGAT 1 chrX:46378633-46378713 ( 58) AGATAGAT 1 chr1:249169074-249169154 ( 65) AGATAGAT 1 chr1:10280395-10280475 ( 72) AGATAGAT 1 chr10:70512609-70512689 ( 62) AGATAGAT 1 chr12:1534010-1534090 ( 56) AGATAGAT 1 chr15:84158575-84158655 ( 58) AGATAGAT 1 chr7:112774275-112774355 ( 51) AGATAGAT 1 chr1:40648409-40648489 ( 6) AGATAGAT 1 chr1:226218742-226218822 ( 73) AGATAGAT 1 chr7:130859738-130859818 ( 18) AGATAGAT 1 chr10:5477405-5477485 ( 61) AGATAGAT 1 chr2:113385400-113385480 ( 57) AGATAGAT 1 chr9:114938732-114938812 ( 62) AGATAGAT 1 chr13:95942295-95942375 ( 65) AGATAGAT 1 chr1:246419235-246419315 ( 19) AGATAGAT 1 chr15:44539932-44540012 ( 50) AGATAGAT 1 chr6:168195608-168195688 ( 64) AGATAGAT 1 chr16:24530001-24530081 ( 67) AGATAGAT 1 chr1:46779278-46779358 ( 49) AGATAGAT 1 chr11:46281057-46281137 ( 53) AGATAGAT 1 chr2:238826465-238826545 ( 63) AGATAGAT 1 chr17:8031580-8031660 ( 52) AGATAGAT 1 chr9:122992662-122992742 ( 60) AGATAGAT 1 chr1:173364072-173364152 ( 61) AGATAGAT 1 chr16:50304063-50304143 ( 65) AGATAGAT 1 chr6:125395398-125395478 ( 67) AGATAGAT 1 chr9:37164446-37164526 ( 59) AGATAGAT 1 chr19:32938644-32938724 ( 67) AGATAGAT 1 chr3:15071291-15071371 ( 51) AGATAGAT 1 chr15:85421105-85421185 ( 23) AGATAGAT 1 chr7:132279661-132279741 ( 51) AGATAGAT 1 chr21:22528877-22528957 ( 51) AGATAGAT 1 chr9:132528223-132528303 ( 52) AGATAGAT 1 chr1:166686018-166686098 ( 54) AGATAGAT 1 chr6:161640857-161640937 ( 20) AGATAGAT 1 chr7:30075994-30076074 ( 52) AGATAGAT 1 chr11:16612851-16612931 ( 53) AGATAGAT 1 chr7:139508983-139509063 ( 65) AGATAGAT 1 chr7:104566795-104566875 ( 65) AGATAGAT 1 chr10:94107198-94107278 ( 67) AGATAGAT 1 chr1:155077755-155077835 ( 54) AGATAGAT 1 chr4:123917664-123917744 ( 70) AGATAGAT 1 chr15:50481118-50481198 ( 52) AGATAGAT 1 chr8:130579117-130579197 ( 62) AGATAGAT 1 chr8:92016178-92016258 ( 55) AGATAGAT 1 chr11:66715463-66715543 ( 57) AGATAGAT 1 chr1:53119878-53119958 ( 57) AGATAGAT 1 chr22:21579325-21579405 ( 65) AGATAGAT 1 chr11:117697710-11769779 ( 63) AGATGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.12365 E= 7.6e-090 146 -1277 -1277 -1277 -1277 -1277 285 -1277 146 -1277 -1277 -1277 -1277 -1277 -1277 146 144 -1277 -328 -1277 -1277 -1277 285 -1277 146 -1277 -1277 -1277 -1277 -1277 -1277 146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 7.6e-090 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.985714 0.000000 0.014286 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-2 regular expression -------------------------------------------------------------------------------- AGATAGAT -------------------------------------------------------------------------------- Time 7.93 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAGAT MEME-3 width = 8 sites = 70 llr = 694 E-value = 5.4e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:a:a: pos.-specific C :::::::: probability G :a:::a:: matrix T :::a:::a bits 2.9 * * 2.6 * * 2.3 * * 2.0 * * Relative 1.7 * * Entropy 1.4 ******** (14.3 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGATAGAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:129088922-12908900 66 4.42e-05 atagatagat agatagat aatagat chr2:108348051-108348131 55 4.42e-05 atctctcCat agatagat gatagataga chr10:74659443-74659523 66 4.42e-05 atagatagat agatagat gatagat chr5:87584012-87584092 72 4.42e-05 gatagataat agatagat a chr3:99933187-99933267 63 4.42e-05 atagatagat agatagat agatagatag chr7:98413083-98413163 17 4.42e-05 gacagatatt agatagat agatagatag chr10:48036084-48036164 46 4.42e-05 gtgtgtgtat agatagat agatgataga chr8:130221484-130221564 48 4.42e-05 atagacagat agatagat aggtagatag chr4:55437128-55437208 50 4.42e-05 atagatagat agatagat agatagatag chr17:57834582-57834662 58 4.42e-05 atagatagat agatagat agatagatGT chr3:171094474-171094554 65 4.42e-05 gatagatgat agatagat agatagat chr7:151901661-151901741 45 4.42e-05 atagatagat agatagat agatagatag chr3:32165271-32165351 17 4.42e-05 attgaaagat agatagat agatagatag chr18:9641313-9641393 15 4.42e-05 atagatagat agatagat agatagatag chr7:152389439-152389519 9 4.42e-05 aaatagat agatagat gatagataga chr6:135494546-135494626 71 4.42e-05 atagatacat agatagat ag chr1:32826438-32826518 51 4.42e-05 atagatagat agatagat gatagataga chr10:30480283-30480363 69 4.42e-05 atagatagat agatagat agat chr1:176604019-176604099 5 4.42e-05 acat agatagat agacacatag chr3:44439911-44439991 56 4.42e-05 atagatagat agatagat agatagatag chr18:9857628-9857708 67 4.42e-05 atagatagat agatagat agatag chrX:46378633-46378713 68 4.42e-05 agatagataa agatagat gatag chr1:249169074-249169154 53 4.42e-05 atagatagat agatagat agatagatag chr1:10280395-10280475 64 4.42e-05 gatagatgat agatagat agatagata chr10:70512609-70512689 50 4.42e-05 atagatagat agatagat agatagatag chr12:1534010-1534090 48 4.42e-05 atagatagat agatagat agatagatag chr15:84158575-84158655 69 4.42e-05 gatagataat agatagat agat chr7:112774275-112774355 3 4.42e-05 at agatagat agataaatag chr1:40648409-40648489 18 4.42e-05 atagataggt agatagat agatagatag chr1:226218742-226218822 49 4.42e-05 gatgatagat agatagat agatagatag chr7:130859738-130859818 10 4.42e-05 tagatagat agatagat agatagatag chr10:5477405-5477485 73 4.42e-05 atagatagat agatagat chr2:113385400-113385480 49 4.42e-05 atagatagat agatagat agatagatgg chr9:114938732-114938812 50 4.42e-05 ctccatagac agatagat agatagatag chr13:95942295-95942375 73 4.42e-05 atagatagat agatagat chr1:246419235-246419315 11 4.42e-05 atagatagat agatagat agatagatag chr15:44539932-44540012 73 4.42e-05 atagataggt agatagat chr16:24530001-24530081 55 4.42e-05 atagatagat agatagat agatagatag chr1:46779278-46779358 73 4.42e-05 atagatagat agatagat chr11:46281057-46281137 17 4.42e-05 GAGATtagat agatagat agatagatag chr2:238826465-238826545 55 4.42e-05 gtagatagat agatagat agatagatag chr17:8031580-8031660 64 4.42e-05 atagatagat agatagat agatagata chr9:122992662-122992742 52 4.42e-05 atagatagat agatagat agatagatag chr1:173364072-173364152 73 4.42e-05 atagatagat agatagat chr16:50304063-50304143 57 4.42e-05 atagatagat agatagat agatagatag chr6:125395398-125395478 59 4.42e-05 atagatagat agatagat agatagatag chr9:37164446-37164526 14 4.42e-05 atagatagat agatagat agatagatag chr19:32938644-32938724 13 4.42e-05 atagatagat agatagat agatagatag chr3:15071291-15071371 11 4.42e-05 aataaataat agatagat agatagatag chr15:85421105-85421185 15 4.42e-05 atagatagat agatagat agatagatag chr7:132279661-132279741 15 4.42e-05 ataggtagat agatagat agatagatag chr21:22528877-22528957 12 4.42e-05 AAGTGtaaat agatagat tatagataga chr9:132528223-132528303 64 4.42e-05 atagatagat agatagat agatagata chr1:166686018-166686098 62 4.42e-05 atagatagat agatagat agatgataga chr6:161640857-161640937 4 4.42e-05 gat agatagat agatagatag chr7:30075994-30076074 64 4.42e-05 atagatagat agatagat agatagata chr11:16612851-16612931 61 4.42e-05 atagatagat agatagat agatttcaga chr7:139508983-139509063 73 4.42e-05 atagatagat agatagat chr7:104566795-104566875 57 4.42e-05 atagatagat agatagat agatagatag chr10:94107198-94107278 59 4.42e-05 atagatagat agatagat agatagatag chr1:155077755-155077835 66 4.42e-05 atagatagat agatagat agatagg chr4:123917664-123917744 62 4.42e-05 gtaggtaggc agatagat agatagatag chr15:50481118-50481198 68 4.42e-05 ataaatagat agatagat agata chr8:130579117-130579197 54 4.42e-05 atagatagat agatagat agatagatag chr8:92016178-92016258 19 4.42e-05 atagatagat agatagat agatagatag chr11:66715463-66715543 65 4.42e-05 atagatagat agatagat atgccagg chr1:53119878-53119958 65 4.42e-05 acagatagat agatagat agataAGC chr22:21579325-21579405 54 4.42e-05 atagatagat agatagat gatagataga chr6:168195608-168195688 24 7.76e-05 ACTTAGGTat agatagac agtagatgtg chr11:117697710-11769779 71 7.76e-05 ACagatggat ggatagat ag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:129088922-12908900 4.4e-05 65_[+3]_7 chr2:108348051-108348131 4.4e-05 54_[+3]_18 chr10:74659443-74659523 4.4e-05 65_[+3]_7 chr5:87584012-87584092 4.4e-05 71_[+3]_1 chr3:99933187-99933267 4.4e-05 62_[+3]_10 chr7:98413083-98413163 4.4e-05 16_[+3]_56 chr10:48036084-48036164 4.4e-05 45_[+3]_27 chr8:130221484-130221564 4.4e-05 47_[+3]_25 chr4:55437128-55437208 4.4e-05 49_[+3]_23 chr17:57834582-57834662 4.4e-05 57_[+3]_15 chr3:171094474-171094554 4.4e-05 64_[+3]_8 chr7:151901661-151901741 4.4e-05 44_[+3]_28 chr3:32165271-32165351 4.4e-05 16_[+3]_56 chr18:9641313-9641393 4.4e-05 14_[+3]_58 chr7:152389439-152389519 4.4e-05 8_[+3]_64 chr6:135494546-135494626 4.4e-05 70_[+3]_2 chr1:32826438-32826518 4.4e-05 50_[+3]_22 chr10:30480283-30480363 4.4e-05 68_[+3]_4 chr1:176604019-176604099 4.4e-05 4_[+3]_68 chr3:44439911-44439991 4.4e-05 55_[+3]_17 chr18:9857628-9857708 4.4e-05 66_[+3]_6 chrX:46378633-46378713 4.4e-05 67_[+3]_5 chr1:249169074-249169154 4.4e-05 52_[+3]_20 chr1:10280395-10280475 4.4e-05 63_[+3]_9 chr10:70512609-70512689 4.4e-05 49_[+3]_23 chr12:1534010-1534090 4.4e-05 47_[+3]_25 chr15:84158575-84158655 4.4e-05 68_[+3]_4 chr7:112774275-112774355 4.4e-05 2_[+3]_70 chr1:40648409-40648489 4.4e-05 17_[+3]_55 chr1:226218742-226218822 4.4e-05 48_[+3]_24 chr7:130859738-130859818 4.4e-05 9_[+3]_63 chr10:5477405-5477485 4.4e-05 72_[+3] chr2:113385400-113385480 4.4e-05 48_[+3]_24 chr9:114938732-114938812 4.4e-05 49_[+3]_23 chr13:95942295-95942375 4.4e-05 72_[+3] chr1:246419235-246419315 4.4e-05 10_[+3]_62 chr15:44539932-44540012 4.4e-05 72_[+3] chr16:24530001-24530081 4.4e-05 54_[+3]_18 chr1:46779278-46779358 4.4e-05 72_[+3] chr11:46281057-46281137 4.4e-05 16_[+3]_56 chr2:238826465-238826545 4.4e-05 54_[+3]_18 chr17:8031580-8031660 4.4e-05 63_[+3]_9 chr9:122992662-122992742 4.4e-05 51_[+3]_21 chr1:173364072-173364152 4.4e-05 72_[+3] chr16:50304063-50304143 4.4e-05 56_[+3]_16 chr6:125395398-125395478 4.4e-05 58_[+3]_14 chr9:37164446-37164526 4.4e-05 13_[+3]_59 chr19:32938644-32938724 4.4e-05 12_[+3]_60 chr3:15071291-15071371 4.4e-05 10_[+3]_62 chr15:85421105-85421185 4.4e-05 14_[+3]_58 chr7:132279661-132279741 4.4e-05 14_[+3]_58 chr21:22528877-22528957 4.4e-05 11_[+3]_61 chr9:132528223-132528303 4.4e-05 63_[+3]_9 chr1:166686018-166686098 4.4e-05 61_[+3]_11 chr6:161640857-161640937 4.4e-05 3_[+3]_69 chr7:30075994-30076074 4.4e-05 63_[+3]_9 chr11:16612851-16612931 4.4e-05 60_[+3]_12 chr7:139508983-139509063 4.4e-05 72_[+3] chr7:104566795-104566875 4.4e-05 56_[+3]_16 chr10:94107198-94107278 4.4e-05 58_[+3]_14 chr1:155077755-155077835 4.4e-05 65_[+3]_7 chr4:123917664-123917744 4.4e-05 61_[+3]_11 chr15:50481118-50481198 4.4e-05 67_[+3]_5 chr8:130579117-130579197 4.4e-05 53_[+3]_19 chr8:92016178-92016258 4.4e-05 18_[+3]_54 chr11:66715463-66715543 4.4e-05 64_[+3]_8 chr1:53119878-53119958 4.4e-05 64_[+3]_8 chr22:21579325-21579405 4.4e-05 53_[+3]_19 chr6:168195608-168195688 7.8e-05 23_[+3]_49 chr11:117697710-11769779 7.8e-05 70_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAGAT width=8 seqs=70 chr12:129088922-12908900 ( 66) AGATAGAT 1 chr2:108348051-108348131 ( 55) AGATAGAT 1 chr10:74659443-74659523 ( 66) AGATAGAT 1 chr5:87584012-87584092 ( 72) AGATAGAT 1 chr3:99933187-99933267 ( 63) AGATAGAT 1 chr7:98413083-98413163 ( 17) AGATAGAT 1 chr10:48036084-48036164 ( 46) AGATAGAT 1 chr8:130221484-130221564 ( 48) AGATAGAT 1 chr4:55437128-55437208 ( 50) AGATAGAT 1 chr17:57834582-57834662 ( 58) AGATAGAT 1 chr3:171094474-171094554 ( 65) AGATAGAT 1 chr7:151901661-151901741 ( 45) AGATAGAT 1 chr3:32165271-32165351 ( 17) AGATAGAT 1 chr18:9641313-9641393 ( 15) AGATAGAT 1 chr7:152389439-152389519 ( 9) AGATAGAT 1 chr6:135494546-135494626 ( 71) AGATAGAT 1 chr1:32826438-32826518 ( 51) AGATAGAT 1 chr10:30480283-30480363 ( 69) AGATAGAT 1 chr1:176604019-176604099 ( 5) AGATAGAT 1 chr3:44439911-44439991 ( 56) AGATAGAT 1 chr18:9857628-9857708 ( 67) AGATAGAT 1 chrX:46378633-46378713 ( 68) AGATAGAT 1 chr1:249169074-249169154 ( 53) AGATAGAT 1 chr1:10280395-10280475 ( 64) AGATAGAT 1 chr10:70512609-70512689 ( 50) AGATAGAT 1 chr12:1534010-1534090 ( 48) AGATAGAT 1 chr15:84158575-84158655 ( 69) AGATAGAT 1 chr7:112774275-112774355 ( 3) AGATAGAT 1 chr1:40648409-40648489 ( 18) AGATAGAT 1 chr1:226218742-226218822 ( 49) AGATAGAT 1 chr7:130859738-130859818 ( 10) AGATAGAT 1 chr10:5477405-5477485 ( 73) AGATAGAT 1 chr2:113385400-113385480 ( 49) AGATAGAT 1 chr9:114938732-114938812 ( 50) AGATAGAT 1 chr13:95942295-95942375 ( 73) AGATAGAT 1 chr1:246419235-246419315 ( 11) AGATAGAT 1 chr15:44539932-44540012 ( 73) AGATAGAT 1 chr16:24530001-24530081 ( 55) AGATAGAT 1 chr1:46779278-46779358 ( 73) AGATAGAT 1 chr11:46281057-46281137 ( 17) AGATAGAT 1 chr2:238826465-238826545 ( 55) AGATAGAT 1 chr17:8031580-8031660 ( 64) AGATAGAT 1 chr9:122992662-122992742 ( 52) AGATAGAT 1 chr1:173364072-173364152 ( 73) AGATAGAT 1 chr16:50304063-50304143 ( 57) AGATAGAT 1 chr6:125395398-125395478 ( 59) AGATAGAT 1 chr9:37164446-37164526 ( 14) AGATAGAT 1 chr19:32938644-32938724 ( 13) AGATAGAT 1 chr3:15071291-15071371 ( 11) AGATAGAT 1 chr15:85421105-85421185 ( 15) AGATAGAT 1 chr7:132279661-132279741 ( 15) AGATAGAT 1 chr21:22528877-22528957 ( 12) AGATAGAT 1 chr9:132528223-132528303 ( 64) AGATAGAT 1 chr1:166686018-166686098 ( 62) AGATAGAT 1 chr6:161640857-161640937 ( 4) AGATAGAT 1 chr7:30075994-30076074 ( 64) AGATAGAT 1 chr11:16612851-16612931 ( 61) AGATAGAT 1 chr7:139508983-139509063 ( 73) AGATAGAT 1 chr7:104566795-104566875 ( 57) AGATAGAT 1 chr10:94107198-94107278 ( 59) AGATAGAT 1 chr1:155077755-155077835 ( 66) AGATAGAT 1 chr4:123917664-123917744 ( 62) AGATAGAT 1 chr15:50481118-50481198 ( 68) AGATAGAT 1 chr8:130579117-130579197 ( 54) AGATAGAT 1 chr8:92016178-92016258 ( 19) AGATAGAT 1 chr11:66715463-66715543 ( 65) AGATAGAT 1 chr1:53119878-53119958 ( 65) AGATAGAT 1 chr22:21579325-21579405 ( 54) AGATAGAT 1 chr6:168195608-168195688 ( 24) AGATAGAC 1 chr11:117697710-11769779 ( 71) GGATAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.12365 E= 5.4e-088 144 -1277 -328 -1277 -1277 -1277 285 -1277 146 -1277 -1277 -1277 -1277 -1277 -1277 146 146 -1277 -1277 -1277 -1277 -1277 285 -1277 146 -1277 -1277 -1277 -1277 -324 -1277 144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 5.4e-088 0.985714 0.000000 0.014286 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.014286 0.000000 0.985714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-3 regular expression -------------------------------------------------------------------------------- AGATAGAT -------------------------------------------------------------------------------- Time 11.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CTATCTAT MEME-4 width = 8 sites = 67 llr = 660 E-value = 2.3e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C a:::a::: probability G :::::::: matrix T :a:a:a:a bits 2.9 * * 2.6 * * 2.3 * * 2.0 * * Relative 1.7 * * Entropy 1.4 ****** * (14.2 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CTATCTAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:5434469-5434549 55 4.17e-05 atctatctat ctatctat ctatctatct chr17:46965647-46965727 49 4.17e-05 atctatctat ctatctat ctatctatct chr19:52431267-52431347 51 4.17e-05 atctatctat ctatctat ctatctaatt chr11:58444198-58444278 47 4.17e-05 tatctattat ctatctat ctatatcttc chr6:44308991-44309071 20 4.17e-05 ctatatctat ctatctat ctatctatct chr1:41726605-41726685 46 4.17e-05 atctatctat ctatctat ctctctatct chr1:201320936-201321016 17 4.17e-05 atctatctat ctatctat ctatctatct chr5:96219734-96219814 24 4.17e-05 atctatctat ctatctat ctatctatct chr1:31755383-31755463 71 4.17e-05 atctatctat ctatctat ct chr10:74190853-74190933 21 4.17e-05 atctatctat ctatctat ctatctatct chr7:16758031-16758111 46 4.17e-05 atctatctgt ctatctat GTCTATGTAC chr12:113933891-11393397 16 4.17e-05 atctatctat ctatctat ctatctatct chr9:98193693-98193773 29 4.17e-05 atctatctgt ctatctat cgtctatcaa chr5:10452083-10452163 1 4.17e-05 . ctatctat atctgtatct chr10:29022345-29022425 25 4.17e-05 tatctattat ctatctat ctatctatct chr12:112963358-11296343 12 4.17e-05 atctatctat ctatctat ctatctatct chr4:42374467-42374547 59 4.17e-05 tatctatcat ctatctat ctatctatca chr13:26823912-26823992 2 4.17e-05 t ctatctat ctatctatct chr7:2960297-2960377 52 4.17e-05 atctatctat ctatctat ctatctatct chr1:24153266-24153346 20 4.17e-05 atctatctat ctatctat ccatctatAt chr1:9836902-9836982 54 4.17e-05 atctatctat ctatctat cagcatttac chr7:5630681-5630761 6 4.17e-05 tttat ctatctat ctatctatct chr11:34640142-34640222 1 4.17e-05 . ctatctat ctatctatct chr12:71020100-71020180 3 4.17e-05 at ctatctat ctatctatct chr1:89949396-89949476 2 4.17e-05 G CTATCTAT ATTTATTAGG chr1:93027147-93027227 47 4.17e-05 atctatctat ctatctat ctatctatct chr4:26852910-26852990 45 4.17e-05 atctatctat ctatctat ctatctatct chr4:119917006-119917086 39 4.17e-05 atctatctat ctatctat ctatctatca chr6:131700174-131700254 24 4.17e-05 atctatctat ctatctat ctatctatct chr2:172058395-172058475 16 4.17e-05 CAGctatcat ctatctat ctatctatct chr16:67142563-67142643 14 4.17e-05 atctatctat ctatctat ctatctatct chr9:131951097-131951177 1 4.17e-05 . ctatctat ctatctatct chr18:19703438-19703518 16 4.17e-05 tatcatctat ctatctat ctatctatct chr4:166430067-166430147 58 4.17e-05 atctacatat ctatctat tatctatcta chr3:38339939-38340019 14 4.17e-05 atctatctat ctatctat ctatctaatc chr8:6475367-6475447 73 4.17e-05 atctatctat ctatctat chr6:150223032-150223112 60 4.17e-05 atctatctat ctatctat ctatctatct chr2:158803835-158803915 50 4.17e-05 atctatctat ctatctat ctatctatca chr8:129340533-129340613 73 4.17e-05 atctatctat ctatctat chr9:115236370-115236450 57 4.17e-05 atctatctat ctatctat ctatctatct chr8:91275540-91275620 1 4.17e-05 . ctatctat ctatctatct chr22:25849184-25849264 20 4.17e-05 atctatctat ctatctat ctatctatct chr19:16007000-16007080 68 4.17e-05 atctatctat ctatctat ctatc chr17:46613669-46613749 58 4.17e-05 atctatctat ctatctat GTGTGTGTGT chr19:15681431-15681511 50 4.17e-05 agctatctat ctatctat ctatctaatc chr1:12577636-12577716 49 4.17e-05 atctatctat ctatctat Gtgagacgaa chr2:171854545-171854625 1 4.17e-05 . ctatctat ctttatctat chr2:234347378-234347458 50 4.17e-05 atctatctat ctatctat ctatctatct chrX:102614700-102614780 2 4.17e-05 t ctatctat ctatctatct chr6:27514460-27514540 19 4.17e-05 AGTtatctat ctatctat ctatccatct chr20:52681635-52681715 60 4.17e-05 atctatctat ctatctat catctacttt chr1:198611512-198611592 2 4.17e-05 t ctatctat ctatctatcA chr7:105431057-105431137 53 4.17e-05 catctatcta ctatctat ctactatcta chr19:40942019-40942099 16 4.17e-05 atctaactaa ctatctat ctatctatct chr9:101591429-101591509 26 4.17e-05 atctatctat ctatctat ctatctatct chr17:8291418-8291498 10 4.17e-05 atctatcta ctatctat gtatctatct chr7:143723734-143723814 14 4.17e-05 atctatctat ctatctat ctatctatct chr11:63733659-63733739 14 4.17e-05 tctatctaat ctatctat ctatctatct chr1:45850044-45850124 3 4.17e-05 at ctatctat ctatctgtct chr10:75743275-75743355 17 4.17e-05 atctatctat ctatctat ctatctatca chr1:8591119-8591199 17 4.17e-05 atctaacttt ctatctat ctgtccatct chr7:103502887-103502967 15 4.17e-05 atctatctat ctatctat ctatctTCTC chr6:27041366-27041446 1 4.17e-05 . ctatctat ctatcatcta chr20:46089378-46089458 1 5.72e-05 . ctacctat catctattta chr6:130427311-130427391 1 5.72e-05 . CTACCTAT TAAAACCTAA chr14:97534821-97534901 61 8.87e-05 atctatttac ctatctct attttctatc chr1:34256330-34256410 21 8.87e-05 tatttatcat ctatctgt gtatcatcta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:5434469-5434549 4.2e-05 54_[+4]_18 chr17:46965647-46965727 4.2e-05 48_[+4]_24 chr19:52431267-52431347 4.2e-05 50_[+4]_22 chr11:58444198-58444278 4.2e-05 46_[+4]_26 chr6:44308991-44309071 4.2e-05 19_[+4]_53 chr1:41726605-41726685 4.2e-05 45_[+4]_27 chr1:201320936-201321016 4.2e-05 16_[+4]_56 chr5:96219734-96219814 4.2e-05 23_[+4]_49 chr1:31755383-31755463 4.2e-05 70_[+4]_2 chr10:74190853-74190933 4.2e-05 20_[+4]_52 chr7:16758031-16758111 4.2e-05 45_[+4]_27 chr12:113933891-11393397 4.2e-05 15_[+4]_57 chr9:98193693-98193773 4.2e-05 28_[+4]_44 chr5:10452083-10452163 4.2e-05 [+4]_72 chr10:29022345-29022425 4.2e-05 24_[+4]_48 chr12:112963358-11296343 4.2e-05 11_[+4]_61 chr4:42374467-42374547 4.2e-05 58_[+4]_14 chr13:26823912-26823992 4.2e-05 1_[+4]_71 chr7:2960297-2960377 4.2e-05 51_[+4]_21 chr1:24153266-24153346 4.2e-05 19_[+4]_53 chr1:9836902-9836982 4.2e-05 53_[+4]_19 chr7:5630681-5630761 4.2e-05 5_[+4]_67 chr11:34640142-34640222 4.2e-05 [+4]_72 chr12:71020100-71020180 4.2e-05 2_[+4]_70 chr1:89949396-89949476 4.2e-05 1_[+4]_71 chr1:93027147-93027227 4.2e-05 46_[+4]_26 chr4:26852910-26852990 4.2e-05 44_[+4]_28 chr4:119917006-119917086 4.2e-05 38_[+4]_34 chr6:131700174-131700254 4.2e-05 23_[+4]_49 chr2:172058395-172058475 4.2e-05 15_[+4]_57 chr16:67142563-67142643 4.2e-05 13_[+4]_59 chr9:131951097-131951177 4.2e-05 [+4]_72 chr18:19703438-19703518 4.2e-05 15_[+4]_57 chr4:166430067-166430147 4.2e-05 57_[+4]_15 chr3:38339939-38340019 4.2e-05 13_[+4]_59 chr8:6475367-6475447 4.2e-05 72_[+4] chr6:150223032-150223112 4.2e-05 59_[+4]_13 chr2:158803835-158803915 4.2e-05 49_[+4]_23 chr8:129340533-129340613 4.2e-05 72_[+4] chr9:115236370-115236450 4.2e-05 56_[+4]_16 chr8:91275540-91275620 4.2e-05 [+4]_72 chr22:25849184-25849264 4.2e-05 19_[+4]_53 chr19:16007000-16007080 4.2e-05 67_[+4]_5 chr17:46613669-46613749 4.2e-05 57_[+4]_15 chr19:15681431-15681511 4.2e-05 49_[+4]_23 chr1:12577636-12577716 4.2e-05 48_[+4]_24 chr2:171854545-171854625 4.2e-05 [+4]_72 chr2:234347378-234347458 4.2e-05 49_[+4]_23 chrX:102614700-102614780 4.2e-05 1_[+4]_71 chr6:27514460-27514540 4.2e-05 18_[+4]_54 chr20:52681635-52681715 4.2e-05 59_[+4]_13 chr1:198611512-198611592 4.2e-05 1_[+4]_71 chr7:105431057-105431137 4.2e-05 52_[+4]_20 chr19:40942019-40942099 4.2e-05 15_[+4]_57 chr9:101591429-101591509 4.2e-05 25_[+4]_47 chr17:8291418-8291498 4.2e-05 9_[+4]_63 chr7:143723734-143723814 4.2e-05 13_[+4]_59 chr11:63733659-63733739 4.2e-05 13_[+4]_59 chr1:45850044-45850124 4.2e-05 2_[+4]_70 chr10:75743275-75743355 4.2e-05 16_[+4]_56 chr1:8591119-8591199 4.2e-05 16_[+4]_56 chr7:103502887-103502967 4.2e-05 14_[+4]_58 chr6:27041366-27041446 4.2e-05 [+4]_72 chr20:46089378-46089458 5.7e-05 [+4]_72 chr6:130427311-130427391 5.7e-05 [+4]_72 chr14:97534821-97534901 8.9e-05 60_[+4]_12 chr1:34256330-34256410 8.9e-05 20_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTATCTAT width=8 seqs=67 chr17:5434469-5434549 ( 55) CTATCTAT 1 chr17:46965647-46965727 ( 49) CTATCTAT 1 chr19:52431267-52431347 ( 51) CTATCTAT 1 chr11:58444198-58444278 ( 47) CTATCTAT 1 chr6:44308991-44309071 ( 20) CTATCTAT 1 chr1:41726605-41726685 ( 46) CTATCTAT 1 chr1:201320936-201321016 ( 17) CTATCTAT 1 chr5:96219734-96219814 ( 24) CTATCTAT 1 chr1:31755383-31755463 ( 71) CTATCTAT 1 chr10:74190853-74190933 ( 21) CTATCTAT 1 chr7:16758031-16758111 ( 46) CTATCTAT 1 chr12:113933891-11393397 ( 16) CTATCTAT 1 chr9:98193693-98193773 ( 29) CTATCTAT 1 chr5:10452083-10452163 ( 1) CTATCTAT 1 chr10:29022345-29022425 ( 25) CTATCTAT 1 chr12:112963358-11296343 ( 12) CTATCTAT 1 chr4:42374467-42374547 ( 59) CTATCTAT 1 chr13:26823912-26823992 ( 2) CTATCTAT 1 chr7:2960297-2960377 ( 52) CTATCTAT 1 chr1:24153266-24153346 ( 20) CTATCTAT 1 chr1:9836902-9836982 ( 54) CTATCTAT 1 chr7:5630681-5630761 ( 6) CTATCTAT 1 chr11:34640142-34640222 ( 1) CTATCTAT 1 chr12:71020100-71020180 ( 3) CTATCTAT 1 chr1:89949396-89949476 ( 2) CTATCTAT 1 chr1:93027147-93027227 ( 47) CTATCTAT 1 chr4:26852910-26852990 ( 45) CTATCTAT 1 chr4:119917006-119917086 ( 39) CTATCTAT 1 chr6:131700174-131700254 ( 24) CTATCTAT 1 chr2:172058395-172058475 ( 16) CTATCTAT 1 chr16:67142563-67142643 ( 14) CTATCTAT 1 chr9:131951097-131951177 ( 1) CTATCTAT 1 chr18:19703438-19703518 ( 16) CTATCTAT 1 chr4:166430067-166430147 ( 58) CTATCTAT 1 chr3:38339939-38340019 ( 14) CTATCTAT 1 chr8:6475367-6475447 ( 73) CTATCTAT 1 chr6:150223032-150223112 ( 60) CTATCTAT 1 chr2:158803835-158803915 ( 50) CTATCTAT 1 chr8:129340533-129340613 ( 73) CTATCTAT 1 chr9:115236370-115236450 ( 57) CTATCTAT 1 chr8:91275540-91275620 ( 1) CTATCTAT 1 chr22:25849184-25849264 ( 20) CTATCTAT 1 chr19:16007000-16007080 ( 68) CTATCTAT 1 chr17:46613669-46613749 ( 58) CTATCTAT 1 chr19:15681431-15681511 ( 50) CTATCTAT 1 chr1:12577636-12577716 ( 49) CTATCTAT 1 chr2:171854545-171854625 ( 1) CTATCTAT 1 chr2:234347378-234347458 ( 50) CTATCTAT 1 chrX:102614700-102614780 ( 2) CTATCTAT 1 chr6:27514460-27514540 ( 19) CTATCTAT 1 chr20:52681635-52681715 ( 60) CTATCTAT 1 chr1:198611512-198611592 ( 2) CTATCTAT 1 chr7:105431057-105431137 ( 53) CTATCTAT 1 chr19:40942019-40942099 ( 16) CTATCTAT 1 chr9:101591429-101591509 ( 26) CTATCTAT 1 chr17:8291418-8291498 ( 10) CTATCTAT 1 chr7:143723734-143723814 ( 14) CTATCTAT 1 chr11:63733659-63733739 ( 14) CTATCTAT 1 chr1:45850044-45850124 ( 3) CTATCTAT 1 chr10:75743275-75743355 ( 17) CTATCTAT 1 chr1:8591119-8591199 ( 17) CTATCTAT 1 chr7:103502887-103502967 ( 15) CTATCTAT 1 chr6:27041366-27041446 ( 1) CTATCTAT 1 chr20:46089378-46089458 ( 1) CTACCTAT 1 chr6:130427311-130427391 ( 1) CTACCTAT 1 chr14:97534821-97534901 ( 61) CTATCTCT 1 chr1:34256330-34256410 ( 21) CTATCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 2.3e-080 -1271 288 -1271 -1271 -1271 -1271 -1271 146 146 -1271 -1271 -1271 -1271 -218 -1271 142 -1271 288 -1271 -1271 -1271 -1271 -1271 146 142 -318 -321 -1271 -1271 -1271 -1271 146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 2.3e-080 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.029851 0.000000 0.970149 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.970149 0.014925 0.014925 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCTAT MEME-4 regular expression -------------------------------------------------------------------------------- CTATCTAT -------------------------------------------------------------------------------- Time 14.33 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAGAT MEME-5 width = 8 sites = 66 llr = 654 E-value = 6.6e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a:a:a: pos.-specific C :::::::: probability G :a:::a:: matrix T :::a:::a bits 2.9 * * 2.6 * * 2.3 * * 2.0 * * Relative 1.7 * * Entropy 1.4 ******** (14.3 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGATAGAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:129088922-12908900 58 4.42e-05 atagatagat agatagat agatagataa chr10:74659443-74659523 50 4.42e-05 atagatagat agatagat agatagatag chr5:87584012-87584092 53 4.42e-05 atagatagat agatagat agatagataa chr3:99933187-99933267 71 4.42e-05 atagatagat agatagat ag chr7:98413083-98413163 25 4.42e-05 ttagatagat agatagat aggtagaaaa chr8:130221484-130221564 72 4.42e-05 atagatagat agatagat a chr4:55437128-55437208 15 4.42e-05 gatagatgat agatagat agatagtaga chr17:57834582-57834662 66 4.42e-05 atagatagat agatagat GTGGTTT chr3:171094474-171094554 54 4.42e-05 ACagatagat agatagat gatagataga chr7:151901661-151901741 21 4.42e-05 acccCtagat agatagat agatagatag chr3:32165271-32165351 33 4.42e-05 atagatagat agatagat agatagatag chr18:9641313-9641393 7 4.42e-05 atagat agatagat agatagatag chr7:152389439-152389519 24 4.42e-05 gatgatagat agatagat agatagatag chr6:135494546-135494626 19 4.42e-05 acagatagat agatagat agatagatag chr1:32826438-32826518 71 4.42e-05 tagatagata agatagat ag chr10:30480283-30480363 49 4.42e-05 acagatagat agatagat agatagatag chr1:176604019-176604099 32 4.42e-05 gatacatgac agatagat gatgatgatg chr3:44439911-44439991 72 4.42e-05 atagatagat agatagat a chr18:9857628-9857708 12 4.42e-05 CCAATAATat agatagat agatagatag chrX:46378633-46378713 50 4.42e-05 atagatagat agatagat agatagataa chr1:249169074-249169154 73 4.42e-05 atagatagat agatagat chr1:10280395-10280475 45 4.42e-05 atagatagat agatagat agatagatga chr10:70512609-70512689 70 4.42e-05 atagatagat agatagat aga chr12:1534010-1534090 8 4.42e-05 gatagat agatagat agatcgatag chr15:84158575-84158655 50 4.42e-05 atagatagat agatagat agatagataa chr7:112774275-112774355 23 4.42e-05 ataaatagat agatagat agatagatag chr1:40648409-40648489 46 4.42e-05 atagatagat agatagat agagtaataa chr1:226218742-226218822 61 4.42e-05 atagatagat agatagat agatagatag chr7:130859738-130859818 2 4.42e-05 t agatagat agatagatag chr10:5477405-5477485 49 4.42e-05 atagatagat agatagat agatagatag chr2:113385400-113385480 17 4.42e-05 atagatagat agatagat agatagatag chr9:114938732-114938812 70 4.42e-05 atagatagat agatagat aga chr1:246419235-246419315 47 4.42e-05 atagatagat agatagat acacacacac chr15:44539932-44540012 61 4.42e-05 gatagatgat agatagat aggtagatag chr16:24530001-24530081 47 4.42e-05 atagatagat agatagat agatagatag chr1:46779278-46779358 61 4.42e-05 atagatagat agatagat agatagatag chr11:46281057-46281137 45 4.42e-05 atagatagat agatagat agatagataT chr2:238826465-238826545 71 4.42e-05 atagatagat agatagat ag chr17:8031580-8031660 72 4.42e-05 atagatagat agatagat a chr9:122992662-122992742 20 4.42e-05 atgacagatt agatagat agatagatag chr1:173364072-173364152 3 4.42e-05 at agatagat agacagacag chr16:50304063-50304143 49 4.42e-05 atagatagat agatagat agatagatag chr6:125395398-125395478 47 4.42e-05 gaagataggt agatagat agatagatag chr9:37164446-37164526 6 4.42e-05 tagat agatagat agatagatag chr19:32938644-32938724 21 4.42e-05 atagatagat agatagat agatagatag chr3:15071291-15071371 27 4.42e-05 atagatagat agatagat agatagatag chr15:85421105-85421185 7 4.42e-05 atagat agatagat agatagatag chr7:132279661-132279741 35 4.42e-05 atagatagat agatagat agatagatag chr21:22528877-22528957 31 4.42e-05 atagatagat agatagat agatagatag chr9:132528223-132528303 72 4.42e-05 atagatagat agatagat a chr1:166686018-166686098 46 4.42e-05 atagacagat agatagat agatagatag chr6:161640857-161640937 12 4.42e-05 atagatagat agatagat agatagatag chr7:30075994-30076074 72 4.42e-05 atagatagat agatagat a chr11:16612851-16612931 21 4.42e-05 atacatagat agatagat agatagatag chr7:139508983-139509063 53 4.42e-05 gatagatgat agatagat agatagatag chr7:104566795-104566875 49 4.42e-05 atagatagat agatagat agatagatag chr10:94107198-94107278 51 4.42e-05 atagatagat agatagat agatagatag chr1:155077755-155077835 15 4.42e-05 agaaaagatt agatagat agatagatga chr15:50481118-50481198 44 4.42e-05 Ctagataggt agatagat agatagataa chr8:130579117-130579197 70 4.42e-05 atagatagat agatagat agg chr8:92016178-92016258 11 4.42e-05 atagatagat agatagat agatagatag chr11:66715463-66715543 49 4.42e-05 atagatagat agatagat agatagatag chr1:53119878-53119958 45 4.42e-05 atagatagat agatagat agacagatag chr22:21579325-21579405 73 4.42e-05 atagatagat agatagat chr10:48036084-48036164 73 7.81e-05 atagatagat agatggat chr4:123917664-123917744 38 7.81e-05 agaggtagct aggtagat agctaggtag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:129088922-12908900 4.4e-05 57_[+5]_15 chr10:74659443-74659523 4.4e-05 49_[+5]_23 chr5:87584012-87584092 4.4e-05 52_[+5]_20 chr3:99933187-99933267 4.4e-05 70_[+5]_2 chr7:98413083-98413163 4.4e-05 24_[+5]_48 chr8:130221484-130221564 4.4e-05 71_[+5]_1 chr4:55437128-55437208 4.4e-05 14_[+5]_58 chr17:57834582-57834662 4.4e-05 65_[+5]_7 chr3:171094474-171094554 4.4e-05 53_[+5]_19 chr7:151901661-151901741 4.4e-05 20_[+5]_52 chr3:32165271-32165351 4.4e-05 32_[+5]_40 chr18:9641313-9641393 4.4e-05 6_[+5]_66 chr7:152389439-152389519 4.4e-05 23_[+5]_49 chr6:135494546-135494626 4.4e-05 18_[+5]_54 chr1:32826438-32826518 4.4e-05 70_[+5]_2 chr10:30480283-30480363 4.4e-05 48_[+5]_24 chr1:176604019-176604099 4.4e-05 31_[+5]_41 chr3:44439911-44439991 4.4e-05 71_[+5]_1 chr18:9857628-9857708 4.4e-05 11_[+5]_61 chrX:46378633-46378713 4.4e-05 49_[+5]_23 chr1:249169074-249169154 4.4e-05 72_[+5] chr1:10280395-10280475 4.4e-05 44_[+5]_28 chr10:70512609-70512689 4.4e-05 69_[+5]_3 chr12:1534010-1534090 4.4e-05 7_[+5]_65 chr15:84158575-84158655 4.4e-05 49_[+5]_23 chr7:112774275-112774355 4.4e-05 22_[+5]_50 chr1:40648409-40648489 4.4e-05 45_[+5]_27 chr1:226218742-226218822 4.4e-05 60_[+5]_12 chr7:130859738-130859818 4.4e-05 1_[+5]_71 chr10:5477405-5477485 4.4e-05 48_[+5]_24 chr2:113385400-113385480 4.4e-05 16_[+5]_56 chr9:114938732-114938812 4.4e-05 69_[+5]_3 chr1:246419235-246419315 4.4e-05 46_[+5]_26 chr15:44539932-44540012 4.4e-05 60_[+5]_12 chr16:24530001-24530081 4.4e-05 46_[+5]_26 chr1:46779278-46779358 4.4e-05 60_[+5]_12 chr11:46281057-46281137 4.4e-05 44_[+5]_28 chr2:238826465-238826545 4.4e-05 70_[+5]_2 chr17:8031580-8031660 4.4e-05 71_[+5]_1 chr9:122992662-122992742 4.4e-05 19_[+5]_53 chr1:173364072-173364152 4.4e-05 2_[+5]_70 chr16:50304063-50304143 4.4e-05 48_[+5]_24 chr6:125395398-125395478 4.4e-05 46_[+5]_26 chr9:37164446-37164526 4.4e-05 5_[+5]_67 chr19:32938644-32938724 4.4e-05 20_[+5]_52 chr3:15071291-15071371 4.4e-05 26_[+5]_46 chr15:85421105-85421185 4.4e-05 6_[+5]_66 chr7:132279661-132279741 4.4e-05 34_[+5]_38 chr21:22528877-22528957 4.4e-05 30_[+5]_42 chr9:132528223-132528303 4.4e-05 71_[+5]_1 chr1:166686018-166686098 4.4e-05 45_[+5]_27 chr6:161640857-161640937 4.4e-05 11_[+5]_61 chr7:30075994-30076074 4.4e-05 71_[+5]_1 chr11:16612851-16612931 4.4e-05 20_[+5]_52 chr7:139508983-139509063 4.4e-05 52_[+5]_20 chr7:104566795-104566875 4.4e-05 48_[+5]_24 chr10:94107198-94107278 4.4e-05 50_[+5]_22 chr1:155077755-155077835 4.4e-05 14_[+5]_58 chr15:50481118-50481198 4.4e-05 43_[+5]_29 chr8:130579117-130579197 4.4e-05 69_[+5]_3 chr8:92016178-92016258 4.4e-05 10_[+5]_62 chr11:66715463-66715543 4.4e-05 48_[+5]_24 chr1:53119878-53119958 4.4e-05 44_[+5]_28 chr22:21579325-21579405 4.4e-05 72_[+5] chr10:48036084-48036164 7.8e-05 72_[+5] chr4:123917664-123917744 7.8e-05 37_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAGAT width=8 seqs=66 chr12:129088922-12908900 ( 58) AGATAGAT 1 chr10:74659443-74659523 ( 50) AGATAGAT 1 chr5:87584012-87584092 ( 53) AGATAGAT 1 chr3:99933187-99933267 ( 71) AGATAGAT 1 chr7:98413083-98413163 ( 25) AGATAGAT 1 chr8:130221484-130221564 ( 72) AGATAGAT 1 chr4:55437128-55437208 ( 15) AGATAGAT 1 chr17:57834582-57834662 ( 66) AGATAGAT 1 chr3:171094474-171094554 ( 54) AGATAGAT 1 chr7:151901661-151901741 ( 21) AGATAGAT 1 chr3:32165271-32165351 ( 33) AGATAGAT 1 chr18:9641313-9641393 ( 7) AGATAGAT 1 chr7:152389439-152389519 ( 24) AGATAGAT 1 chr6:135494546-135494626 ( 19) AGATAGAT 1 chr1:32826438-32826518 ( 71) AGATAGAT 1 chr10:30480283-30480363 ( 49) AGATAGAT 1 chr1:176604019-176604099 ( 32) AGATAGAT 1 chr3:44439911-44439991 ( 72) AGATAGAT 1 chr18:9857628-9857708 ( 12) AGATAGAT 1 chrX:46378633-46378713 ( 50) AGATAGAT 1 chr1:249169074-249169154 ( 73) AGATAGAT 1 chr1:10280395-10280475 ( 45) AGATAGAT 1 chr10:70512609-70512689 ( 70) AGATAGAT 1 chr12:1534010-1534090 ( 8) AGATAGAT 1 chr15:84158575-84158655 ( 50) AGATAGAT 1 chr7:112774275-112774355 ( 23) AGATAGAT 1 chr1:40648409-40648489 ( 46) AGATAGAT 1 chr1:226218742-226218822 ( 61) AGATAGAT 1 chr7:130859738-130859818 ( 2) AGATAGAT 1 chr10:5477405-5477485 ( 49) AGATAGAT 1 chr2:113385400-113385480 ( 17) AGATAGAT 1 chr9:114938732-114938812 ( 70) AGATAGAT 1 chr1:246419235-246419315 ( 47) AGATAGAT 1 chr15:44539932-44540012 ( 61) AGATAGAT 1 chr16:24530001-24530081 ( 47) AGATAGAT 1 chr1:46779278-46779358 ( 61) AGATAGAT 1 chr11:46281057-46281137 ( 45) AGATAGAT 1 chr2:238826465-238826545 ( 71) AGATAGAT 1 chr17:8031580-8031660 ( 72) AGATAGAT 1 chr9:122992662-122992742 ( 20) AGATAGAT 1 chr1:173364072-173364152 ( 3) AGATAGAT 1 chr16:50304063-50304143 ( 49) AGATAGAT 1 chr6:125395398-125395478 ( 47) AGATAGAT 1 chr9:37164446-37164526 ( 6) AGATAGAT 1 chr19:32938644-32938724 ( 21) AGATAGAT 1 chr3:15071291-15071371 ( 27) AGATAGAT 1 chr15:85421105-85421185 ( 7) AGATAGAT 1 chr7:132279661-132279741 ( 35) AGATAGAT 1 chr21:22528877-22528957 ( 31) AGATAGAT 1 chr9:132528223-132528303 ( 72) AGATAGAT 1 chr1:166686018-166686098 ( 46) AGATAGAT 1 chr6:161640857-161640937 ( 12) AGATAGAT 1 chr7:30075994-30076074 ( 72) AGATAGAT 1 chr11:16612851-16612931 ( 21) AGATAGAT 1 chr7:139508983-139509063 ( 53) AGATAGAT 1 chr7:104566795-104566875 ( 49) AGATAGAT 1 chr10:94107198-94107278 ( 51) AGATAGAT 1 chr1:155077755-155077835 ( 15) AGATAGAT 1 chr15:50481118-50481198 ( 44) AGATAGAT 1 chr8:130579117-130579197 ( 70) AGATAGAT 1 chr8:92016178-92016258 ( 11) AGATAGAT 1 chr11:66715463-66715543 ( 49) AGATAGAT 1 chr1:53119878-53119958 ( 45) AGATAGAT 1 chr22:21579325-21579405 ( 73) AGATAGAT 1 chr10:48036084-48036164 ( 73) AGATGGAT 1 chr4:123917664-123917744 ( 38) AGGTAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.14152 E= 6.6e-080 146 -1269 -1269 -1269 -1269 -1269 285 -1269 144 -1269 -319 -1269 -1269 -1269 -1269 146 144 -1269 -319 -1269 -1269 -1269 285 -1269 146 -1269 -1269 -1269 -1269 -1269 -1269 146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 6.6e-080 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.984848 0.000000 0.015152 0.000000 0.000000 0.000000 0.000000 1.000000 0.984848 0.000000 0.015152 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAGAT MEME-5 regular expression -------------------------------------------------------------------------------- AGATAGAT -------------------------------------------------------------------------------- Time 17.42 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:150404611-150404691 1.00e+00 80 chr15:28531334-28531414 1.00e+00 80 chr2:239790064-239790144 3.94e-01 80 chr8:143774080-143774160 1.00e+00 80 chr15:96285644-96285724 9.97e-01 80 chr18:2545285-2545365 9.92e-01 80 chr11:59965077-59965157 1.00e+00 80 chr22:21579325-21579405 1.45e-04 17_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_7_[+2(4.42e-05)]_\ [+2(4.42e-05)] chr2:119569255-119569335 1.00e+00 80 chr4:99696982-99697062 1.00e+00 80 chr1:192091965-192092045 9.87e-01 80 chr3:139587793-139587873 1.00e+00 80 chr1:53119878-53119958 1.53e-04 20_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_4_[+2(4.42e-05)]_[+2(4.42e-05)]_8 chr1:186829276-186829356 1.00e+00 80 chr11:66715463-66715543 1.15e-04 20_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_12 chr7:97584851-97584931 3.98e-01 80 chr7:156318051-156318131 9.95e-01 80 chr8:92016178-92016258 1.56e-04 2_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 22 chr11:34986324-34986404 2.40e-02 80 chr1:18799079-18799159 9.75e-01 80 chr8:130579117-130579197 1.56e-04 21_[+2(4.42e-05)]_8_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_3 chr15:50481118-50481198 3.39e-05 43_[+2(4.42e-05)]_[+2(4.42e-05)]_4_\ [+2(4.42e-05)]_[+2(4.42e-05)]_1 chr11:71322409-71322489 6.05e-01 80 chr3:14134118-14134198 9.99e-01 80 chr12:441889-441969 9.97e-01 80 chr11:67750115-67750195 5.81e-01 80 chr6:27041366-27041446 1.01e-02 1_[+1(4.17e-05)]_7_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_3_\ [+1(4.17e-05)]_13 chr11:117697710-11769779 3.86e-04 62_[+2(6.11e-05)]_[+3(7.76e-05)]_2 chr4:123917664-123917744 1.02e-04 37_[+5(7.81e-05)]_16_[+2(4.42e-05)]_\ [+2(4.42e-05)]_3 chr6:150824353-150824433 6.61e-02 80 chr1:155077755-155077835 1.56e-04 14_[+2(4.42e-05)]_[+2(4.42e-05)]_3_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 7 chr5:180203566-180203646 9.57e-01 80 chr7:103502887-103502967 1.01e-02 3_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_53 chr1:34256330-34256410 1.64e-02 20_[+4(8.87e-05)]_44_[+1(4.17e-05)] chr10:94107198-94107278 1.27e-04 22_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 2 chr2:13602746-13602826 9.99e-01 80 chr4:74114292-74114372 9.98e-01 80 chr10:15037043-15037123 7.39e-01 80 chr2:239788823-239788903 9.90e-01 80 chr11:69793276-69793356 9.70e-01 80 chr17:60964936-60965016 1.00e+00 80 chr7:104566795-104566875 7.84e-05 20_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 4 chr5:169176458-169176538 4.50e-01 80 chr7:139508983-139509063 1.56e-04 6_[+2(4.42e-05)]_3_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_3_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_4 chr1:111535094-111535174 7.36e-01 80 chr19:40673582-40673662 9.18e-01 80 chr11:16612851-16612931 1.50e-04 16_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+3(7.76e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 8 chr16:74896777-74896857 8.34e-01 80 chr18:29049751-29049831 9.74e-01 80 chr7:30075994-30076074 9.78e-05 8_[+5(7.81e-05)]_15_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 1 chr12:125351242-12535132 4.69e-01 80 chr17:32254930-32255010 9.30e-01 80 chr1:146582175-146582255 9.96e-01 80 chr6:161640857-161640937 1.56e-04 3_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_37 chr1:8591119-8591199 1.01e-02 1_[+1(4.17e-05)]_8_[+1(4.17e-05)]_\ 12_[+1(4.17e-05)]_35 chr1:166686018-166686098 1.53e-04 6_[+2(4.42e-05)]_15_[+2(4.42e-05)]_\ 4_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_7 chr10:75743275-75743355 9.22e-03 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_47 chr1:45850044-45850124 5.83e-03 3_[+1(4.17e-05)]_8_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_29 chr9:132528223-132528303 1.56e-04 7_[+2(4.42e-05)]_20_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_5 chr21:22528877-22528957 1.02e-04 11_[+2(4.42e-05)]_3_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_26 chr11:63733659-63733739 1.00e-02 1_[+1(4.17e-05)]_5_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_26 chr7:132279661-132279741 1.56e-04 10_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_22 chr4:4136244-4136324 9.63e-01 80 chr19:41433631-41433711 9.44e-01 80 chr2:71360903-71360983 9.89e-01 80 chr7:143723734-143723814 9.84e-03 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_3_\ [+1(4.17e-05)]_19 chr13:41998968-41999048 8.16e-01 80 chr10:76555049-76555129 9.74e-01 80 chr8:13084648-13084728 1.00e+00 80 chr15:85421105-85421185 1.56e-04 2_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_30 chr8:136913359-136913439 9.97e-01 80 chr3:15071291-15071371 2.37e-05 10_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_2_\ [+3(7.76e-05)]_12 chr18:49180029-49180109 9.23e-01 80 chr3:115067957-115068037 9.91e-01 80 chr7:145724495-145724575 9.99e-01 80 chr19:32938644-32938724 7.84e-05 [+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_26_[+2(4.42e-05)]_6 chr1:154483928-154484008 1.00e+00 80 chr1:174716887-174716967 6.87e-01 80 chr7:6886176-6886256 9.68e-01 80 chr17:8291418-8291498 1.00e-02 9_[+4(4.17e-05)]_1_[+1(4.17e-05)]_\ [+1(4.17e-05)]_4_[+1(4.17e-05)]_7_[+4(8.87e-05)]_[+4(8.87e-05)]_11 chr9:37164446-37164526 7.84e-05 1_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_9_\ [+2(4.42e-05)]_14 chr15:63801429-63801509 9.57e-01 80 chr9:101591429-101591509 3.89e-04 6_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_26 chr9:104982-105062 2.98e-01 80 chr6:125395398-125395478 1.04e-04 46_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_2 chr16:50304063-50304143 1.01e-04 24_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_8 chr6:162499856-162499936 5.38e-01 80 chr1:173364072-173364152 1.56e-04 2_[+2(4.42e-05)]_24_[+2(4.42e-05)]_\ 14_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)] chr7:111941045-111941125 8.35e-01 80 chr9:122992662-122992742 1.56e-04 3_[+2(4.42e-05)]_8_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 4_[+3(7.76e-05)]_1 chr17:8031580-8031660 1.50e-04 47_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_1 chr19:40942019-40942099 9.93e-03 16_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_24 chr2:238826465-238826545 1.17e-04 10_[+2(4.42e-05)]_16_[+2(4.42e-05)]_\ 4_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_2 chr7:105431057-105431137 1.01e-02 3_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_10_[+1(4.17e-05)]_3_\ [+1(4.17e-05)]_[+1(4.17e-05)] chr16:69653577-69653657 8.92e-01 80 chrX:129510210-129510290 9.74e-01 80 chr3:8714939-8715019 9.18e-01 80 chr6:12175361-12175441 9.79e-01 80 chr1:198611512-198611592 1.01e-02 2_[+1(4.17e-05)]_[+1(4.17e-05)]_62 chr1:101369482-101369562 9.96e-01 80 chr11:46281057-46281137 1.53e-04 12_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_20 chr20:52681635-52681715 1.01e-02 5_[+1(4.17e-05)]_7_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 12 chr11:61561085-61561165 6.22e-01 80 chr1:46779278-46779358 1.27e-04 36_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_4 chr16:24530001-24530081 1.54e-04 18_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 6 chr6:27514460-27514540 7.41e-03 11_[+1(4.17e-05)]_[+1(4.17e-05)]_8_\ [+1(4.17e-05)]_[+1(4.17e-05)]_29 chrX:102614700-102614780 1.24e-03 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_38 chr4:4138507-4138587 9.03e-01 80 chr6:168195608-168195688 1.49e-04 23_[+3(7.76e-05)]_32_[+2(4.42e-05)]_\ 9 chr2:234347378-234347458 1.01e-02 15_[+1(4.17e-05)]_3_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 6 chr2:47833470-47833550 3.74e-01 80 chr2:171854545-171854625 1.01e-02 1_[+1(4.17e-05)]_2_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_29 chr13:97905994-97906074 9.90e-01 80 chr1:12577636-12577716 9.94e-03 13_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_27 chr19:15681431-15681511 9.22e-03 5_[+1(4.17e-05)]_1_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_4_[+1(4.17e-05)]_[+1(4.17e-05)]_22 chr6:130427311-130427391 2.38e-01 [+4(5.72e-05)]_72 chr17:46613669-46613749 1.01e-02 18_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_22 chr2:185281392-185281472 1.00e+00 80 chr15:44539932-44540012 1.55e-04 17_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_3_[+2(4.42e-05)]_4_\ [+2(4.42e-05)] chr10:15024865-15024945 8.16e-01 80 chr1:51998661-51998741 3.76e-01 80 chr19:16007000-16007080 9.22e-03 11_[+4(8.87e-05)]_5_[+1(4.17e-05)]_\ 12_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_4 chr22:25849184-25849264 9.84e-03 4_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_28 chr17:35613717-35613797 6.77e-01 80 chr1:6859718-6859798 9.77e-01 80 chr11:75119031-75119111 8.90e-01 80 chr15:90196955-90197035 9.50e-01 80 chr8:91275540-91275620 9.84e-03 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_3_[+1(4.17e-05)]_36 chr9:115236370-115236450 1.01e-02 2_[+1(4.17e-05)]_31_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_7 chr12:8795493-8795573 1.00e+00 80 chr2:71247441-71247521 8.79e-01 80 chr1:52336438-52336518 9.97e-01 80 chr1:246419235-246419315 1.56e-04 2_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_30 chr8:129340533-129340613 1.01e-02 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_7_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_7 chr9:96731715-96731795 5.25e-01 80 chr2:158803835-158803915 1.01e-02 5_[+4(8.87e-05)]_1_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 18 chr15:71741099-71741179 9.26e-01 80 chr6:150223032-150223112 1.01e-02 20_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 4 chr1:180428095-180428175 5.42e-01 80 chr5:73583135-73583215 8.97e-01 80 chr13:95942295-95942375 7.84e-05 64_[+2(4.42e-05)]_[+2(4.42e-05)] chr8:6475367-6475447 1.01e-02 36_[+1(4.17e-05)]_[+1(4.17e-05)]_5_\ [+1(4.17e-05)]_[+1(4.17e-05)]_7 chr3:38339939-38340019 1.01e-02 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_5_[+1(4.17e-05)]_41 chr9:114938732-114938812 1.55e-04 49_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_7 chr1:219589416-219589496 9.99e-01 80 chr12:96826728-96826808 9.93e-01 80 chr4:166430067-166430147 9.22e-03 54_[+1(4.17e-05)]_3_[+1(4.17e-05)]_\ 7 chr2:113385400-113385480 1.56e-04 8_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 8_[+3(7.76e-05)] chr18:19703438-19703518 1.01e-02 1_[+1(4.17e-05)]_3_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_7_\ [+1(4.17e-05)]_13 chr8:29906821-29906901 9.97e-01 80 chr10:5477405-5477485 8.36e-05 32_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)] chr7:130859738-130859818 1.07e-04 1_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_25_[+2(6.11e-05)]_22 chr4:26265890-26265970 1.00e+00 80 chr22:36359444-36359524 9.79e-01 80 chr9:131951097-131951177 3.82e-03 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_3_[+1(4.17e-05)]_[+1(4.17e-05)]_28 chr1:226218742-226218822 1.53e-04 3_[+2(4.42e-05)]_33_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_4 chr1:40648409-40648489 1.15e-04 5_[+2(4.42e-05)]_4_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_31 chr16:67142563-67142643 9.84e-03 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_7_[+1(4.17e-05)]_\ [+1(4.17e-05)]_15 chr2:172058395-172058475 9.84e-03 16_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_24 chr2:159735876-159735956 9.97e-01 80 chr7:112774275-112774355 1.53e-04 2_[+2(4.42e-05)]_8_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_22 chr1:198055635-198055715 9.93e-01 80 chr6:131700174-131700254 1.01e-02 8_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_18_[+1(4.17e-05)]_6 chr4:119917006-119917086 1.01e-02 11_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_29 chr1:167963082-167963162 9.96e-01 80 chr15:84158575-84158655 1.51e-04 17_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_3_\ [+2(4.42e-05)]_4 chr21:40825870-40825950 5.25e-01 80 chr4:26852910-26852990 9.84e-03 17_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 7 chr12:1534010-1534090 6.82e-06 3_[+2(4.42e-05)]_[+2(4.42e-05)]_4_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 17 chr7:121166486-121166566 8.76e-01 80 chr10:70512609-70512689 3.32e-05 33_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_7 chr1:93027147-93027227 1.01e-02 1_[+1(4.17e-05)]_10_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_5 chr1:10280395-10280475 1.45e-04 36_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_3_[+2(4.42e-05)]_[+2(4.42e-05)]_1 chr1:249169074-249169154 1.54e-04 10_[+2(4.42e-05)]_[+5(7.81e-05)]_2_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_4 chr1:89949396-89949476 7.15e-02 1_[+4(4.17e-05)]_71 chr14:96851236-96851316 1.00e+00 80 chr12:71020100-71020180 9.84e-03 3_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_37 chr11:34640142-34640222 1.01e-02 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_3_\ [+1(4.17e-05)]_20 chr4:4166669-4166749 9.51e-01 80 chrX:46378633-46378713 1.56e-04 4_[+2(4.42e-05)]_1_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 6_[+2(4.42e-05)]_5 chr7:5630681-5630761 2.11e-03 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_38 chr8:116464142-116464222 9.98e-01 80 chr1:9836902-9836982 1.01e-02 18_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_22 chr18:9857628-9857708 1.53e-04 11_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_7_[+2(4.42e-05)]_\ [+2(4.42e-05)]_6 chr3:44439911-44439991 1.15e-04 27_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_5 chr1:176604019-176604099 1.56e-04 4_[+2(4.42e-05)]_19_[+2(4.42e-05)]_\ 26_[+2(4.42e-05)]_7 chr1:24153266-24153346 9.84e-03 [+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_56 chr15:40422486-40422566 6.26e-01 80 chr4:1409606-1409686 9.17e-01 80 chr7:2960297-2960377 1.00e-02 21_[+1(4.17e-05)]_3_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_8 chr13:26823912-26823992 1.01e-02 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_16_[+4(5.72e-05)]_30 chr7:97587527-97587607 3.76e-01 80 chr19:93751-93831 1.00e+00 80 chr6:68787707-68787787 9.79e-01 80 chr4:42374467-42374547 1.01e-02 12_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_7_[+1(4.17e-05)]_\ [+1(4.17e-05)]_5 chr1:226735522-226735602 9.97e-01 80 chr10:30480283-30480363 1.53e-04 1_[+2(4.42e-05)]_8_[+2(4.42e-05)]_3_\ [+2(4.42e-05)]_4_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)] chr1:32826438-32826518 1.01e-04 10_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_3_\ [+2(4.42e-05)]_1_[+2(4.42e-05)]_2 chr1:212464997-212465077 8.92e-01 80 chr6:135494546-135494626 1.56e-04 10_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_4_[+2(4.42e-05)]_4_[+2(4.42e-05)]_4_\ [+2(4.42e-05)]_2 chr7:152389439-152389519 1.56e-04 4_[+2(4.42e-05)]_7_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_21 chr12:112963358-11296343 1.00e-02 [+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_18_\ [+4(8.87e-05)]_6 chr18:9641313-9641393 1.56e-04 2_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_8_[+2(4.42e-05)]_12_[+2(4.42e-05)]_\ [+2(4.42e-05)]_2 chr10:29022345-29022425 9.22e-03 21_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_19 chr5:10452083-10452163 1.19e-04 [+4(4.17e-05)]_5_[+1(5.77e-05)]_59 chr9:98193693-98193773 1.01e-02 13_[+1(4.17e-05)]_8_[+1(4.17e-05)]_\ 43 chr12:113933891-11393397 1.01e-02 [+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_4_[+4(8.87e-05)]_28 chr7:16758031-16758111 1.00e-02 2_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_3_[+4(4.17e-05)]_27 chr7:139305854-139305934 1.00e+00 80 chr10:71615245-71615325 9.87e-01 80 chr3:32165271-32165351 1.56e-04 12_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_20 chr10:74190853-74190933 3.89e-04 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_39 chr1:31755383-31755463 1.01e-02 23_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 1 chr10:58901627-58901707 1.00e+00 80 chr5:96219734-96219814 1.01e-02 4_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_28 chr14:97534821-97534901 1.25e-02 22_[+1(4.17e-05)]_30_[+4(8.87e-05)]_\ 12 chr7:151901661-151901741 1.51e-04 16_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+3(7.76e-05)]_16 chr8:38841437-38841517 9.74e-01 80 chr3:171094474-171094554 1.53e-04 45_[+2(4.42e-05)]_[+2(4.42e-05)]_3_\ [+2(4.42e-05)]_[+2(4.42e-05)] chr1:158635986-158636066 9.99e-01 80 chr1:201320936-201321016 1.01e-02 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_7_[+1(4.17e-05)]_24 chr1:41726605-41726685 1.01e-02 [+1(4.17e-05)]_11_[+1(4.17e-05)]_3_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_4_[+1(4.17e-05)]_\ [+1(4.17e-05)]_6 chr17:57834582-57834662 1.25e-04 17_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 7 chr16:13728236-13728316 4.65e-02 25_[+1(4.17e-05)]_47 chr4:55437128-55437208 1.56e-04 3_[+2(4.42e-05)]_3_[+2(4.42e-05)]_7_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 11 chr2:71269534-71269614 1.00e+00 80 chr20:32657174-32657254 1.00e+00 80 chr7:129280404-129280484 7.17e-01 80 chr8:130221484-130221564 1.55e-04 43_[+2(4.42e-05)]_8_[+2(4.42e-05)]_\ [+2(4.42e-05)]_5 chr10:15016591-15016671 1.88e-01 80 chr1:41817583-41817663 3.56e-03 3_[+1(4.17e-05)]_69 chr4:8974532-8974612 6.05e-01 80 chr6:44308991-44309071 9.84e-03 12_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_28 chr10:48036084-48036164 1.53e-04 45_[+2(4.42e-05)]_7_[+2(4.42e-05)]_\ [+2(4.42e-05)]_4 chr6:12995802-12995882 4.58e-02 80 chr7:98413083-98413163 1.56e-04 16_[+2(4.42e-05)]_[+2(4.42e-05)]_38_\ [+2(4.42e-05)]_2 chr5:90496624-90496704 9.39e-01 80 chr3:99933187-99933267 1.56e-04 13_[+2(6.11e-05)]_[+2(4.42e-05)]_1_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ [+2(4.42e-05)]_2 chr10:119416055-11941613 1.79e-02 [+1(4.17e-05)]_72 chr5:68668380-68668460 9.97e-01 80 chr5:87584012-87584092 1.53e-04 6_[+2(4.42e-05)]_14_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_3_\ [+2(4.42e-05)]_1 chr20:46089378-46089458 1.25e-02 [+4(5.72e-05)]_18_[+1(4.17e-05)]_3_\ [+1(4.17e-05)]_35 chr11:58444198-58444278 9.84e-03 1_[+1(4.17e-05)]_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_2_[+4(4.17e-05)]_[+1(4.17e-05)]_20_\ [+4(8.87e-05)]_1 chr19:52431267-52431347 1.01e-02 [+1(4.17e-05)]_[+1(4.17e-05)]_23_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_5_[+1(4.17e-05)]_4 chr10:74659443-74659523 1.56e-04 6_[+2(4.42e-05)]_7_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_\ 11 chr15:102478933-10247901 6.87e-01 80 chr2:108348051-108348131 1.42e-05 54_[+2(4.42e-05)]_3_[+2(4.42e-05)]_\ 7 chr12:129088922-12908900 1.51e-04 7_[+2(4.42e-05)]_14_[+2(4.42e-05)]_\ [+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_[+2(4.42e-05)]_11 chr17:46965647-46965727 9.84e-03 17_[+1(4.17e-05)]_4_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_11 chr17:5434469-5434549 1.01e-02 1_[+1(4.17e-05)]_18_[+1(4.17e-05)]_\ [+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_[+1(4.17e-05)]_\ 5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************