******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/CUX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:171954209-171954289 1.0000 80 chr16:23976810-23976890 1.0000 80 chr1:3235074-3235154 1.0000 80 chr1:101664937-101665017 1.0000 80 chr13:111720275-11172035 1.0000 80 chr5:88133835-88133915 1.0000 80 chr7:12473749-12473829 1.0000 80 chr15:84234447-84234527 1.0000 80 chrX:153011970-153012050 1.0000 80 chr20:53297121-53297201 1.0000 80 chr12:130205315-13020539 1.0000 80 chr2:128669470-128669550 1.0000 80 chr18:53191730-53191810 1.0000 80 chr12:63497403-63497483 1.0000 80 chr2:172931290-172931370 1.0000 80 chr7:130452642-130452722 1.0000 80 chr17:1133368-1133448 1.0000 80 chr9:132386604-132386684 1.0000 80 chr17:55910871-55910951 1.0000 80 chr11:58344691-58344771 1.0000 80 chr10:29419272-29419352 1.0000 80 chr4:108658324-108658404 1.0000 80 chr11:59197574-59197654 1.0000 80 chr12:120097267-12009734 1.0000 80 chr16:75048378-75048458 1.0000 80 chr12:52285764-52285844 1.0000 80 chr6:30800767-30800847 1.0000 80 chr17:53847858-53847938 1.0000 80 chr8:1710996-1711076 1.0000 80 chr5:175965520-175965600 1.0000 80 chr1:167970629-167970709 1.0000 80 chr8:38735602-38735682 1.0000 80 chr3:17464281-17464361 1.0000 80 chr7:8803238-8803318 1.0000 80 chr1:109106571-109106651 1.0000 80 chr2:25144152-25144232 1.0000 80 chr2:62404708-62404788 1.0000 80 chr19:45699229-45699309 1.0000 80 chr3:196264340-196264420 1.0000 80 chr6:106594852-106594932 1.0000 80 chr6:28947091-28947171 1.0000 80 chr5:114946690-114946770 1.0000 80 chr4:84194161-84194241 1.0000 80 chr9:127504140-127504220 1.0000 80 chr19:3900039-3900119 1.0000 80 chr3:32975750-32975830 1.0000 80 chr22:32869435-32869515 1.0000 80 chr1:193087544-193087624 1.0000 80 chr16:19234743-19234823 1.0000 80 chr7:76876691-76876771 1.0000 80 chr19:52690790-52690870 1.0000 80 chr10:43851543-43851623 1.0000 80 chr15:69595891-69595971 1.0000 80 chr7:148589374-148589454 1.0000 80 chrX:418139-418219 1.0000 80 chr6:105851419-105851499 1.0000 80 chr17:25960670-25960750 1.0000 80 chr9:94166331-94166411 1.0000 80 chr1:211750248-211750328 1.0000 80 chr3:47952378-47952458 1.0000 80 chr9:86607518-86607598 1.0000 80 chr5:90162276-90162356 1.0000 80 chr8:125199517-125199597 1.0000 80 chr6:100678126-100678206 1.0000 80 chr1:196116807-196116887 1.0000 80 chr3:25704906-25704986 1.0000 80 chr17:46656348-46656428 1.0000 80 chr10:22318623-22318703 1.0000 80 chr6:74170891-74170971 1.0000 80 chr7:152604334-152604414 1.0000 80 chr5:172205365-172205445 1.0000 80 chr1:234656899-234656979 1.0000 80 chr16:81232386-81232466 1.0000 80 chr16:79636221-79636301 1.0000 80 chr1:27993933-27994013 1.0000 80 chr15:40399189-40399269 1.0000 80 chr3:24544273-24544353 1.0000 80 chr1:39859898-39859978 1.0000 80 chr10:95271135-95271215 1.0000 80 chr19:54276365-54276445 1.0000 80 chr1:114219213-114219293 1.0000 80 chrX:8776893-8776973 1.0000 80 chr10:126576944-12657702 1.0000 80 chr11:111475312-11147539 1.0000 80 chr19:5689400-5689480 1.0000 80 chr8:130249901-130249981 1.0000 80 chr22:39514025-39514105 1.0000 80 chr9:38334438-38334518 1.0000 80 chr3:193569130-193569210 1.0000 80 chr20:31319282-31319362 1.0000 80 chr1:202555624-202555704 1.0000 80 chr2:63194220-63194300 1.0000 80 chrX:154439626-154439706 1.0000 80 chr15:89531749-89531829 1.0000 80 chr2:188446309-188446389 1.0000 80 chr13:25079467-25079547 1.0000 80 chr5:39498589-39498669 1.0000 80 chr11:12790951-12791031 1.0000 80 chr18:43802910-43802990 1.0000 80 chr7:65865522-65865602 1.0000 80 chr5:71552648-71552728 1.0000 80 chr1:109127083-109127163 1.0000 80 chr12:69742024-69742104 1.0000 80 chr5:173287782-173287862 1.0000 80 chr6:147631652-147631732 1.0000 80 chr7:93717189-93717269 1.0000 80 chr12:69548570-69548650 1.0000 80 chr21:46496452-46496532 1.0000 80 chr16:81294813-81294893 1.0000 80 chr1:172371162-172371242 1.0000 80 chr9:75172684-75172764 1.0000 80 chr2:171253794-171253874 1.0000 80 chr4:38162664-38162744 1.0000 80 chr4:40553019-40553099 1.0000 80 chr11:62148339-62148419 1.0000 80 chr1:28454238-28454318 1.0000 80 chr2:27321627-27321707 1.0000 80 chr7:92441586-92441666 1.0000 80 chr2:102954670-102954750 1.0000 80 chr20:39779551-39779631 1.0000 80 chr3:47926841-47926921 1.0000 80 chr15:23712355-23712435 1.0000 80 chr3:156858080-156858160 1.0000 80 chr7:101459285-101459365 1.0000 80 chr1:207406144-207406224 1.0000 80 chr1:93434157-93434237 1.0000 80 chr19:3700664-3700744 1.0000 80 chr12:54151016-54151096 1.0000 80 chr1:75878511-75878591 1.0000 80 chr5:55293744-55293824 1.0000 80 chr5:1191133-1191213 1.0000 80 chr7:30981354-30981434 1.0000 80 chr3:128197715-128197795 1.0000 80 chr12:48161108-48161188 1.0000 80 chr16:67090229-67090309 1.0000 80 chr8:95972237-95972317 1.0000 80 chr4:73192586-73192666 1.0000 80 chr1:29535111-29535191 1.0000 80 chr10:15484267-15484347 1.0000 80 chr11:62195220-62195300 1.0000 80 chr3:151694302-151694382 1.0000 80 chr2:170803219-170803299 1.0000 80 chr5:118357836-118357916 1.0000 80 chr15:75404737-75404817 1.0000 80 chr9:19085439-19085519 1.0000 80 chr11:13950473-13950553 1.0000 80 chr2:26310999-26311079 1.0000 80 chr2:188362718-188362798 1.0000 80 chr7:13156863-13156943 1.0000 80 chr7:19787551-19787631 1.0000 80 chr2:153492310-153492390 1.0000 80 chr3:141173905-141173985 1.0000 80 chr1:28736351-28736431 1.0000 80 chr20:44437297-44437377 1.0000 80 chr18:33162369-33162449 1.0000 80 chr7:25608698-25608778 1.0000 80 chr2:197255055-197255135 1.0000 80 chr1:27105785-27105865 1.0000 80 chr7:148526207-148526287 1.0000 80 chr1:39434911-39434991 1.0000 80 chr7:103164981-103165061 1.0000 80 chr2:178076457-178076537 1.0000 80 chr1:40439402-40439482 1.0000 80 chr22:22005723-22005803 1.0000 80 chr12:124662570-12466265 1.0000 80 chr2:64750086-64750166 1.0000 80 chr3:151920871-151920951 1.0000 80 chr12:125477531-12547761 1.0000 80 chr3:17484904-17484984 1.0000 80 chr1:114235704-114235784 1.0000 80 chr17:71226423-71226503 1.0000 80 chr6:13674852-13674932 1.0000 80 chrX:109399602-109399682 1.0000 80 chr3:45729703-45729783 1.0000 80 chr17:57243393-57243473 1.0000 80 chr6:33352466-33352546 1.0000 80 chr7:22765426-22765506 1.0000 80 chr2:66660560-66660640 1.0000 80 chr1:112199220-112199300 1.0000 80 chr2:70528451-70528531 1.0000 80 chr10:89307595-89307675 1.0000 80 chr15:55699798-55699878 1.0000 80 chr1:161700283-161700363 1.0000 80 chr3:195908871-195908951 1.0000 80 chr4:113090461-113090541 1.0000 80 chr14:68161633-68161713 1.0000 80 chr11:74352572-74352652 1.0000 80 chr2:191217763-191217843 1.0000 80 chr21:34677037-34677117 1.0000 80 chr12:110869888-11086996 1.0000 80 chr1:150738216-150738296 1.0000 80 chr15:65326233-65326313 1.0000 80 chr21:35338741-35338821 1.0000 80 chr13:46863272-46863352 1.0000 80 chr8:106337712-106337792 1.0000 80 chr4:123402249-123402329 1.0000 80 chr1:84899541-84899621 1.0000 80 chr4:175240441-175240521 1.0000 80 chr21:40012055-40012135 1.0000 80 chr7:156454498-156454578 1.0000 80 chr5:82373906-82373986 1.0000 80 chr4:151493920-151494000 1.0000 80 chr2:169894969-169895049 1.0000 80 chr8:41461873-41461953 1.0000 80 chr2:172455382-172455462 1.0000 80 chr3:127889945-127890025 1.0000 80 chr1:12529591-12529671 1.0000 80 chr12:76088786-76088866 1.0000 80 chr6:159139622-159139702 1.0000 80 chr3:58885807-58885887 1.0000 80 chr9:75768886-75768966 1.0000 80 chr6:37145580-37145660 1.0000 80 chr1:168188025-168188105 1.0000 80 chr2:169659939-169660019 1.0000 80 chr21:34025730-34025810 1.0000 80 chr8:38226131-38226211 1.0000 80 chr6:30312102-30312182 1.0000 80 chr15:69336022-69336102 1.0000 80 chr3:172248639-172248719 1.0000 80 chr13:49875407-49875487 1.0000 80 chr4:68563105-68563185 1.0000 80 chr9:130830258-130830338 1.0000 80 chr2:173942667-173942747 1.0000 80 chr6:88410725-88410805 1.0000 80 chr12:24565042-24565122 1.0000 80 chr13:91520741-91520821 1.0000 80 chr4:48901366-48901446 1.0000 80 chr12:47055251-47055331 1.0000 80 chr6:116966904-116966984 1.0000 80 chr14:34035507-34035587 1.0000 80 chr11:113484465-11348454 1.0000 80 chr19:2724420-2724500 1.0000 80 chr7:154474506-154474586 1.0000 80 chr22:27041304-27041384 1.0000 80 chr1:29506384-29506464 1.0000 80 chr19:12034579-12034659 1.0000 80 chr6:14317568-14317648 1.0000 80 chr12:8223249-8223329 1.0000 80 chr18:57213493-57213573 1.0000 80 chr7:137634640-137634720 1.0000 80 chr1:70685853-70685933 1.0000 80 chr10:22678840-22678920 1.0000 80 chr8:17016235-17016315 1.0000 80 chr8:69127584-69127664 1.0000 80 chr12:42539616-42539696 1.0000 80 chr6:35361207-35361287 1.0000 80 chr22:30841359-30841439 1.0000 80 chr2:178052422-178052502 1.0000 80 chr2:12428194-12428274 1.0000 80 chr7:130667139-130667219 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_CUX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/CUX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.203 G 0.203 T 0.301 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.203 G 0.203 T 0.301 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KATYRATH MEME-1 width = 8 sites = 223 llr = 1432 E-value = 2.3e-143 ******************************************************************************** -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a::3a:3 pos.-specific C 1::6:::3 probability G 2:::6::1 matrix T 4:a4::a2 bits 2.3 2.1 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 *** ** (9.3 bits) 0.9 ****** 0.7 ****** 0.5 ****** 0.2 ****** 0.0 -------- Multilevel TATCGATC consensus G TA A sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:84899541-84899621 16 1.96e-05 GGAGCAAATG TATCGATC GTGTCATTAT chr12:110869888-11086996 11 1.96e-05 gatctatatc tatcgatc tatatatcta chr7:22765426-22765506 26 1.96e-05 GTCACTGTTT TATCGATC TTGAAGAGAT chr12:124662570-12466265 71 1.96e-05 TAtatctatt tatcgatc aa chr3:25704906-25704986 22 1.96e-05 GCCGGCGAAT TATCGATC TGTCGTGGGA chr5:90162276-90162356 51 1.96e-05 CCCTTAAATT TATCGATC TCTCTTTAGC chr8:1710996-1711076 17 1.96e-05 AGATGCTCTG TATCGATC GCATGCTATC chr8:95972237-95972317 18 3.28e-05 ATGTTAAACA GATCGATC AATGAGTAAA chr7:152604334-152604414 44 3.28e-05 tctatctatt gatcgatc gatctatTGA chr12:8223249-8223329 39 6.11e-05 agatatcatc taTCGATA CTCAAGCCGC chr12:24565042-24565122 19 6.11e-05 atccgtatcg tatcgata cgatcgataa chr13:25079467-25079547 25 6.11e-05 ccctgcaaga tatcgata agatgttccc chr9:94166331-94166411 23 6.11e-05 TCTGTAGACT TATCGATA CTCAGCAGAC chr7:130667139-130667219 68 9.01e-05 CATTCTTAGG TATTGATC AGGAG chr10:22678840-22678920 37 9.01e-05 aatgaataaa tATTGATC TCTGGACGAA chr21:34025730-34025810 18 9.01e-05 CTCCCATGAT TATTGATC ATTAACAAGG chr1:161700283-161700363 60 9.01e-05 AGATATCTGT TATTGATC TCCCAGGAAG chr7:103164981-103165061 64 9.01e-05 CATTTGTGTT TATTGATC CATATATGT chr7:19787551-19787631 51 9.01e-05 ACAACTAAAA TATTGATC GTTACCTCTA chr16:67090229-67090309 59 9.01e-05 caaaattatg tattgatc agttgaggaa chr7:30981354-30981434 46 9.01e-05 tccaccaatt tattgatc catcatctat chr20:39779551-39779631 36 9.01e-05 tcaaatgcct tattgatc tctgtttccc chr5:71552648-71552728 39 9.01e-05 TAGCCTTATA TATTGATC CACTGATCAT chrX:154439626-154439706 45 9.01e-05 AAGCAATAAA TATTGATC AACTTGATCA chr1:202555624-202555704 40 9.01e-05 CAGGGACAGC TATTGATC TTTTGTGTTC chr20:31319282-31319362 18 9.01e-05 aagaATGTGT TATTGATC CCTCGTCCCT chr5:172205365-172205445 54 9.01e-05 GCGATGCATT TATTGATC CACTCACCTA chr1:211750248-211750328 17 9.01e-05 TTTCAAAAAG TATTGATC AAAAGTATTC chr7:148589374-148589454 29 9.01e-05 attgatcgta tattgatc aattgttcat chr10:43851543-43851623 42 9.01e-05 caagccagtt tattgatc tgggtggtgc chr19:52690790-52690870 64 9.01e-05 TCTGTATAGG TATTGATC TGTATAGGT chr19:3900039-3900119 63 9.01e-05 tcaataacaa tattgatc aatattggtt chr5:114946690-114946770 27 9.01e-05 attgatccca tattgatc aactgtcatt chr6:106594852-106594932 66 9.01e-05 GAGTTCCTCT TATTGATC TCCAGGC chr2:62404708-62404788 36 9.01e-05 AGCCAGCACT TATTGATC ACCAAGCTAT chr1:167970629-167970709 10 9.01e-05 GCAATTGAT TATTGATC ATATTATTGA chr16:75048378-75048458 32 9.01e-05 agctatactc tattgatc tatttattga chr4:108658324-108658404 62 9.01e-05 gcccagaagt tattgatc aagtgttttc chr7:130452642-130452722 48 9.01e-05 aataactgat tattgatc ataataatta chr2:172931290-172931370 34 9.01e-05 GTGTAATTGT TATTGATC CACTGTGTAG chr20:53297121-53297201 17 9.01e-05 TATTAATTAT TATTGATC ATTATCGATT chr1:3235074-3235154 46 9.01e-05 attagctatc tattgatc atctatcagt chr4:48901366-48901446 53 1.57e-04 attagagaaa tatcgatt aggaattttc chr4:175240441-175240521 26 1.57e-04 AAAACTTCTG TATCGATT AACTCCTAAA chr1:40439402-40439482 31 1.57e-04 TGTTTTGGAA TATCGATt ccattgatcc chr21:46496452-46496532 10 1.57e-04 CTTAAAAAT AATCGATC CAGCTCTGAG chr7:93717189-93717269 29 1.57e-04 CCATAACCGC AATCGATC CTGTAGGTGG chr1:109127083-109127163 22 1.57e-04 CTACCCATAG TATCGATT TTGGACTTTG chr9:38334438-38334518 47 1.57e-04 ggaaacaatt aatcgatc aatccctctt chr17:46656348-46656428 42 1.57e-04 ACCGCGGGCG GATCGATA GGAAATTCAT chr6:100678126-100678206 52 1.57e-04 ACACGCTTGT AATCGATC TCTTATTGAT chr6:105851419-105851499 23 1.57e-04 GGGAAGAAGT AATCGATC ATGATGACCG chr9:127504140-127504220 40 1.57e-04 CGGTAGCCAT GATCGATA TCAGGGAGAA chr2:25144152-25144232 18 1.57e-04 TCCATTAGAG AATCGATC CTGCCACTGC chr7:8803238-8803318 13 1.57e-04 tgacccccac tatcgatt cctcactatt chr6:30800767-30800847 65 1.57e-04 tcaatctata tatcgatt gattGATC chr1:171954209-171954289 39 1.57e-04 AACTGGAATG TATCGATT AGCAGTGATT chr19:2724420-2724500 30 2.18e-04 atctatcatc tatcaatc atctatctgt chr14:68161633-68161713 57 2.18e-04 GCCTTGGGCT GATTGATC TATCACCTGG chr10:89307595-89307675 37 2.18e-04 accatagagc catcgatc aatatgtgat chr10:15484267-15484347 54 2.18e-04 gatctgctcc gattgatc ctgcagtcct chr1:27993933-27994013 18 2.18e-04 TAGATCAATA GATTGATC AATCGATAGA chr10:22318623-22318703 67 2.18e-04 GGTTACTCAC CATCGATC AGCATT chrX:418139-418219 4 2.18e-04 atc tatcaatc atcaatcatc chr11:59197574-59197654 57 2.18e-04 TTGCAATAGT GATTGATC ATCCTCAAAC chrX:153011970-153012050 64 2.18e-04 attgatagat gattgatc gattgattg chr5:88133835-88133915 58 2.18e-04 tggatcaata tatcaatC CAGTCTCACA chr22:30841359-30841439 46 2.99e-04 TCAAACTGAT tattgata aactcttagt chr8:17016235-17016315 27 2.99e-04 CGTGGCCTGT TATTGATA CCTTATCTAT chr7:137634640-137634720 25 2.99e-04 TCTAAGGATC TATTGATA AGCTCCTTGT chr2:169659939-169660019 29 2.99e-04 ATCCTTCATG TATTGATA ACACAAACTG chr2:66660560-66660640 31 2.99e-04 GCTCCCTGCT GATCGATT ATTTGATAAT chr3:45729703-45729783 20 2.99e-04 GAAATTAATT GATCGATT GAGTGATTGG chr12:125477531-12547761 49 2.99e-04 cTGGCACTAA GATCGATT GGCGGGACCG chr3:151920871-151920951 47 2.99e-04 ATACATTATT TATTGATA ACCTTTGTTA chr2:26310999-26311079 44 2.99e-04 AATTACTGTG TATTGATA AGTCATCAGA chr12:54151016-54151096 30 2.99e-04 GGGCGACTCT GATCGATT GCCTTCCGGT chr1:93434157-93434237 44 2.99e-04 TGGTGCAGGG TATTGATA AGCCAAGGTG chr5:173287782-173287862 57 2.99e-04 ACTGTTCAAT TATTGATA AGGAGCTCCC chr10:95271135-95271215 51 2.99e-04 CAACTCCGTG TATTGATA CTGATAGAAA chr15:40399189-40399269 48 2.99e-04 CTGCTGAAGT TATTGATA TGAGTTTCTT chr17:25960670-25960750 46 2.99e-04 TCAGCAGAGG GATCGATT TGTTCAATGC chr7:12473749-12473829 28 2.99e-04 CAATATTCAA TATTGATA ATAAATATTG chr19:54276365-54276445 49 3.27e-04 CTATCAATGT AATCGATA ACAGGCTGCC chr8:38735602-38735682 31 3.27e-04 AGGCAGTGGg aatcgata cggctcgatg chr12:63497403-63497483 30 3.27e-04 CATATCTACT AATCGATA ATAATAATGA chr6:14317568-14317648 23 3.46e-04 ATAGTCGATA GATCAATC CACTGGGGCT chr6:13674852-13674932 59 3.46e-04 gtgaacctgt gatcaatc cagcagctga chr9:132386604-132386684 52 3.46e-04 AATTGCCCAG GATCAATC CCTTTGCTTA chr2:178052422-178052502 26 5.19e-04 gaagtggggt aattgatc tgtcacactc chr8:69127584-69127664 66 5.19e-04 TAATGAACAT TATTGATT AAAATGT chr1:29506384-29506464 16 5.19e-04 GTTGATGGGT TATCAATA CATTTGGTTG chr4:68563105-68563185 29 5.19e-04 gatgaatata tattgatt atattgaaac chr1:12529591-12529671 23 5.19e-04 AAAATACAGT GATTGATA ATCCATCATC chr7:156454498-156454578 17 5.19e-04 CAGTCTGCAT TATCAATA ACTGCCACCT chr8:106337712-106337792 47 5.19e-04 ATCAGCAAAA TATCAATA TAGAAAGTGG chr21:34677037-34677117 26 5.19e-04 CAGTTGACTG AATTGATC AGCACTTTTG chr2:191217763-191217843 37 5.19e-04 CCCGCTTGCC TATTGATT AGAGAGCAGT chr1:112199220-112199300 52 5.19e-04 agcatttgat aattgatc aattcttcct chrX:109399602-109399682 28 5.19e-04 TAATATTGGA TATTGATT TATTTTATTT chr7:25608698-25608778 69 5.19e-04 GGTCATCAAT TATCAATA GCAT chr7:13156863-13156943 49 5.19e-04 CCTCTGGGCA TATCAATA ATATTGGTTA chr15:75404737-75404817 20 5.19e-04 CAAGAACCCT TATCAATA CCTGCCTCCC chr11:62195220-62195300 45 5.19e-04 TGCCTGGACT AATTGATC AGTAGGAAAG chr19:3700664-3700744 27 5.19e-04 GCACGATACG TATCAATA ACATTGCTGT chr1:207406144-207406224 49 5.19e-04 acgtgtacct catcgatA TATGACTTCA chr7:101459285-101459365 42 5.19e-04 GCCAATGTGG GATCGATG TTTCAATATT chr2:102954670-102954750 41 5.19e-04 ACTTGCTCTT GATTGATA AACAGAATGG chr11:62148339-62148419 24 5.19e-04 ttccttgcct tatcaata attttatgta chr7:65865522-65865602 45 5.19e-04 gtttaataat tattgatt accaattgat chr11:12790951-12791031 30 5.19e-04 TGGGAGTATG TATTGATT AGTCAGTACA chr15:89531749-89531829 46 5.19e-04 tgacctggca tattgatt atttcaagcc chrX:8776893-8776973 34 5.19e-04 caataattat tattgatt attattGACT chr16:79636221-79636301 36 5.19e-04 GGTCAGTTGA AATTGATC CGTGTCCAGT chr1:234656899-234656979 6 5.19e-04 TGATA TATTGATT GCTCATGGCT chr1:196116807-196116887 35 5.19e-04 gattattgcc tattgatt attgtcttgt chr8:125199517-125199597 40 5.19e-04 CCTCAATAAG Tattgatt aattgattga chr9:86607518-86607598 50 5.19e-04 gtgcagtaaa tattgatt ttgggattac chr6:28947091-28947171 70 5.19e-04 actttatcaa tatcaata tca chr3:17464281-17464361 38 5.19e-04 ATTTATTGAT TATTGATT ATATGCAACT chr17:53847858-53847938 39 5.19e-04 CTATCAAGAA TATTGATT ATGCTATAGA chr12:52285764-52285844 14 5.19e-04 cctgggtcct tatcaata gtaaatatta chr18:53191730-53191810 36 5.19e-04 AGACCATGAT TATTGATT AAGTAATCAA chr2:128669470-128669550 44 5.19e-04 GATTATAGAT TATTGATt gcaaatcaat chr12:130205315-13020539 30 5.19e-04 ATAATCAACG TATCAATA ATCAATAATC chr6:88410725-88410805 32 5.47e-04 AGCTGCAACC AATCGATT ACGGCAAGCA chr15:55699798-55699878 35 5.47e-04 AATGAGGACA AATCGATT AGGGAGACCA chr11:58344691-58344771 55 5.47e-04 ACACTATGCC AATCGATT ATTACAACTG chr9:130830258-130830338 59 6.08e-04 CCGCCCACCC CATTGATC CGGGTAGTCC chr6:30312102-30312182 19 6.08e-04 TCTCAGGGTT CATTGATC TTCTACCCCT chr2:188362718-188362798 13 6.08e-04 GCAATTGATT TATTAATC TCTTATGGGG chr3:128197715-128197795 39 6.08e-04 TCAGACATGT CATTGATC TGGAATATCA chr2:27321627-27321707 65 6.08e-04 gttttcaatc cattgatc agagaaca chr4:38162664-38162744 19 6.08e-04 attccagccc cattgatc ttctcttctg chr9:75172684-75172764 11 6.08e-04 TTGCCTGTGG CATTGATC TGCTCACTCA chr1:172371162-172371242 17 6.08e-04 CATTCACACT CATTGATC TACCGCTTGG chr2:63194220-63194300 40 6.08e-04 GGCATGTGTG CATTGATC CAGGTCCGCC chr6:74170891-74170971 22 6.08e-04 TGATCAAATT CATTGATC GTAGGTGGCC chr12:42539616-42539696 53 7.83e-04 CAGGCTGAAG GATCAATA AACAGGCTCT chr8:41461873-41461953 19 7.83e-04 GATATGGGTG GATCAATA TCTTTTCTGT chr5:82373906-82373986 39 7.83e-04 GGACTGCAGC GATTGATT AGGTACTTTA chr17:71226423-71226503 22 7.83e-04 tcaatcagtc aatcaatc aaccaatcaa chr22:22005723-22005803 32 7.83e-04 ACAGCCCGGT GATCAATA TACTTCCTAG chr2:178076457-178076537 38 7.83e-04 ATCCATAGAT TATCAATT TATGGCTGTC chr2:197255055-197255135 9 7.83e-04 GTTGGAAT GATCAATA TGTCAACTTG chr9:19085439-19085519 25 7.83e-04 catatcagat gatcaata cattcactga chr5:118357836-118357916 62 7.83e-04 TTACTGCACT TATTGATG ACTTTAAGCA chr3:151694302-151694382 52 7.83e-04 GACCTATTTC CATCGATT TTCATTTCAG chr3:156858080-156858160 37 7.83e-04 ggcaatattt gatcaata gatcaatatt chr3:47926841-47926921 36 7.83e-04 tcaatcaatc aatcaatc aatcaattca chr1:28454238-28454318 31 7.83e-04 caagatagga gatcaata gactctttga chr6:147631652-147631732 31 7.83e-04 ttgattgatt gattgatt gattgattga chr12:69742024-69742104 25 7.83e-04 AGAGTCAGTG GATCAATA GACAGTTCCT chr5:39498589-39498669 60 7.83e-04 ACTTATAGTT TATCAATT CTGATCCTTC chr3:193569130-193569210 10 7.83e-04 GCTGCTAGG GATCAATA TATTATCTCT chr1:114219213-114219293 66 7.83e-04 AATAAAATGT TATTGATG ACAACTT chr1:39859898-39859978 24 7.83e-04 ttgattgatt gattgatt gattgattga chr3:24544273-24544353 12 7.83e-04 CACACTGTTG GATTGATT GACATGAACA chr16:81232386-81232466 14 7.83e-04 ATGAGATGGT GATCAATA GGTCCTGTCC chr15:69595891-69595971 34 7.83e-04 ACATCcaatc aatcaatc aatcaatcag chr7:76876691-76876771 54 7.83e-04 CGAGGTGTAG GATCAATA CCTGGGAAGT chr3:196264340-196264420 1 7.83e-04 . aatcaatc atcaatcGGC chr19:45699229-45699309 35 7.83e-04 gtcattcccc tattgatg atcattcagg chr10:29419272-29419352 29 7.83e-04 TGAATTCAGG GATCAATA ATGAAGATGT chr17:1133368-1133448 32 7.83e-04 atgattgatt gattgatt gactgattga chr15:84234447-84234527 30 7.83e-04 AAGCAGCATC TATTGATG AGATTTTCCC chr19:12034579-12034659 19 8.43e-04 TCGCGAAACT AATCGATG GGGTGAGAAG chr19:5689400-5689480 63 8.43e-04 GAGCTTGACC AATTGATA ACAAAACCAA chr22:27041304-27041384 13 1.07e-03 CCACCCAGGA GATCAATT TCTTTGTTGA chr3:172248639-172248719 25 1.07e-03 CTTTTCAGCT CATTGATA ACTGTCAGGG chr4:151493920-151494000 49 1.07e-03 TTCTGGAGCT CATTGATA ATGACATACC chr3:141173905-141173985 19 1.07e-03 ACGTCTGGGT CATCGATG ACCTTATGCA chr1:75878511-75878591 43 1.07e-03 gacatccagc cattgata ctgccatggc chr15:23712355-23712435 58 1.07e-03 ATTCAATGAA GATCAATT AGACAGTTTG chr2:171253794-171253874 59 1.07e-03 GGCAATGCTT TATCAATG GTCCAGTGAC chr12:69548570-69548650 44 1.07e-03 tccaatagtt tatcaatg ccctttttta chr2:12428194-12428274 29 1.15e-03 TGCTGGAGAT AATCAATA AATCCAGAAA chr15:65326233-65326313 40 1.15e-03 GATTGCATGC AATTGATT AGCTCCATAG chr1:114235704-114235784 20 1.15e-03 ccatgaagga aatcaata aggcgatata chr18:33162369-33162449 8 1.15e-03 CATCCAT AATCAATA CGTTGCCCAT chr20:44437297-44437377 3 1.15e-03 tc aatcaata aaccaaccaa chr2:153492310-153492390 21 1.15e-03 GGGTCCTAGT AATCAATA CAACCTATGG chr2:170803219-170803299 27 1.15e-03 ATGCTAAGAA AATTGATT ATTGGCAAAC chr7:92441586-92441666 72 1.15e-03 AATATCCAAT AATCAATA A chr22:39514025-39514105 34 1.15e-03 attcactagt aattgatt aacgtcacat chr22:32869435-32869515 14 1.15e-03 caaagtaggc aatcaata catatttatt chr5:175965520-175965600 45 1.15e-03 GCATGCATAT AATCAATA ACGACTCTTG chr17:55910871-55910951 60 1.15e-03 ATTTTCAAAT AATCAATA TCTCATTATT chr13:111720275-11172035 54 1.15e-03 TGTTAATTAT AATCAATA TTCTGCCCAC chr16:23976810-23976890 46 1.15e-03 ATTACATATA AATCAATA ATCAATAATC chr6:35361207-35361287 42 1.37e-03 CCCCAAGTGT CATCAATA AGTCACTCCG chr18:57213493-57213573 2 1.37e-03 t catcaata aactgcctgt chr11:113484465-11348454 23 1.37e-03 tcacaacaaa gatcaatg tacttcctca chr13:91520741-91520821 56 1.37e-03 TCAATGATTT CATCAATA TTTATGAGAT chr15:69336022-69336102 45 1.37e-03 GCACACTGTG GATCAATG GGCTAGATAC chr1:168188025-168188105 33 1.37e-03 ggaagttcaa gatcaatg ggccagtatc chr6:37145580-37145660 50 1.37e-03 GTCTGCGGGG GATCAATG TCATGGCCAG chr9:75768886-75768966 31 1.37e-03 aacgtgatga gatcaatg ctgatgagtc chr3:127889945-127890025 54 1.37e-03 GGATCGGGAT GATCAATG TGTAGTTTCA chr6:33352466-33352546 44 1.37e-03 GGATCTTTGA CATTGATT TTCGGAGCGG chr2:188446309-188446389 40 1.37e-03 ggtttgtctc gatcaatg ttcacttcga chr11:111475312-11147539 38 1.37e-03 ATCAGAGTGA GATCAATG CATTCATTTG chr4:84194161-84194241 56 1.37e-03 TTTCTTCAGT CATTGATT AGTAACACCA chr1:109106571-109106651 56 1.37e-03 TTGAGCAAGT CATCAATA GGAGTTGATA chr1:101664937-101665017 23 1.37e-03 TTCTTGAAAG GATCAATG AATGACTTCT chr21:40012055-40012135 13 1.44e-03 atcaatgaaa aatcaatt gaaaatcatt chr4:123402249-123402329 43 1.44e-03 TAACTTGAGT AATCAATT TAAAAATTGG chr3:32975750-32975830 18 1.44e-03 TTTATCATGA AATCAATT TTCTAAATAC chr1:28736351-28736431 37 1.60e-03 ATGCCTAGTT CATCAATT AGATCCATCA chr13:46863272-46863352 34 1.68e-03 TTTAGACACT AATCAATG ACACCAGCAA chr2:70528451-70528531 50 1.68e-03 CCGACCCACT AATCAATG ACTCAAGGGG chr3:17484904-17484984 15 1.68e-03 gccaatcact aatcaatg ttatttctat chr8:130249901-130249981 29 1.68e-03 AGGAAGAGAT AATCAATG CTTCctcttt chr3:47952378-47952458 59 1.68e-03 TTTCCAAAGG AATCAATG CCTGCATGGT chr16:19234743-19234823 46 1.68e-03 TATCCATTCT AATCAATG AGCGTGGAGG chr8:38226131-38226211 71 1.86e-03 CTGTTTCCCT TATCTATC TA chr2:172455382-172455462 17 2.08e-03 caggtttgat tatttatc aacagtatgt chr12:76088786-76088866 31 2.18e-03 gcagaaacaa gatctata ctgtttctat chr4:113090461-113090541 46 2.18e-03 TTCCAATCAG GATCTATA TTTTGCTTAT chr11:13950473-13950553 55 2.39e-03 tcacatgcct aatctata aagagaggtt chr12:48161108-48161188 64 2.58e-03 atgtattgaa tatttatt gagttccta chr1:193087544-193087624 54 2.58e-03 atatagttga catctata gactattcaa chr18:43802910-43802990 69 2.86e-03 TGCTTGTAGG AATCTATG AGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:84899541-84899621 2e-05 15_[+1]_57 chr12:110869888-11086996 2e-05 10_[+1]_62 chr7:22765426-22765506 2e-05 25_[+1]_47 chr12:124662570-12466265 2e-05 70_[+1]_2 chr3:25704906-25704986 2e-05 21_[+1]_51 chr5:90162276-90162356 2e-05 50_[+1]_22 chr8:1710996-1711076 2e-05 16_[+1]_56 chr8:95972237-95972317 3.3e-05 17_[+1]_55 chr7:152604334-152604414 3.3e-05 43_[+1]_29 chr12:8223249-8223329 6.1e-05 38_[+1]_34 chr12:24565042-24565122 6.1e-05 18_[+1]_54 chr13:25079467-25079547 6.1e-05 24_[+1]_48 chr9:94166331-94166411 6.1e-05 22_[+1]_50 chr7:130667139-130667219 9e-05 67_[+1]_5 chr10:22678840-22678920 9e-05 36_[+1]_36 chr21:34025730-34025810 9e-05 17_[+1]_55 chr1:161700283-161700363 9e-05 59_[+1]_13 chr7:103164981-103165061 9e-05 63_[+1]_9 chr7:19787551-19787631 9e-05 50_[+1]_22 chr16:67090229-67090309 9e-05 58_[+1]_14 chr7:30981354-30981434 9e-05 45_[+1]_27 chr20:39779551-39779631 9e-05 35_[+1]_37 chr5:71552648-71552728 9e-05 38_[+1]_34 chrX:154439626-154439706 9e-05 44_[+1]_28 chr1:202555624-202555704 9e-05 39_[+1]_33 chr20:31319282-31319362 9e-05 17_[+1]_55 chr5:172205365-172205445 9e-05 53_[+1]_19 chr1:211750248-211750328 9e-05 16_[+1]_56 chr7:148589374-148589454 9e-05 28_[+1]_44 chr10:43851543-43851623 9e-05 41_[+1]_31 chr19:52690790-52690870 9e-05 63_[+1]_9 chr19:3900039-3900119 9e-05 62_[+1]_10 chr5:114946690-114946770 9e-05 26_[+1]_46 chr6:106594852-106594932 9e-05 65_[+1]_7 chr2:62404708-62404788 9e-05 35_[+1]_37 chr1:167970629-167970709 9e-05 9_[+1]_63 chr16:75048378-75048458 9e-05 31_[+1]_41 chr4:108658324-108658404 9e-05 61_[+1]_11 chr7:130452642-130452722 9e-05 47_[+1]_25 chr2:172931290-172931370 9e-05 33_[+1]_39 chr20:53297121-53297201 9e-05 16_[+1]_56 chr1:3235074-3235154 9e-05 45_[+1]_27 chr4:48901366-48901446 0.00016 52_[+1]_20 chr4:175240441-175240521 0.00016 25_[+1]_47 chr1:40439402-40439482 0.00016 30_[+1]_42 chr21:46496452-46496532 0.00016 9_[+1]_63 chr7:93717189-93717269 0.00016 28_[+1]_44 chr1:109127083-109127163 0.00016 21_[+1]_51 chr9:38334438-38334518 0.00016 46_[+1]_26 chr17:46656348-46656428 0.00016 41_[+1]_31 chr6:100678126-100678206 0.00016 51_[+1]_21 chr6:105851419-105851499 0.00016 22_[+1]_50 chr9:127504140-127504220 0.00016 39_[+1]_33 chr2:25144152-25144232 0.00016 17_[+1]_55 chr7:8803238-8803318 0.00016 12_[+1]_60 chr6:30800767-30800847 0.00016 64_[+1]_8 chr1:171954209-171954289 0.00016 38_[+1]_34 chr19:2724420-2724500 0.00022 29_[+1]_43 chr14:68161633-68161713 0.00022 56_[+1]_16 chr10:89307595-89307675 0.00022 36_[+1]_36 chr10:15484267-15484347 0.00022 53_[+1]_19 chr1:27993933-27994013 0.00022 17_[+1]_55 chr10:22318623-22318703 0.00022 66_[+1]_6 chrX:418139-418219 0.00022 3_[+1]_69 chr11:59197574-59197654 0.00022 56_[+1]_16 chrX:153011970-153012050 0.00022 63_[+1]_9 chr5:88133835-88133915 0.00022 57_[+1]_15 chr22:30841359-30841439 0.0003 45_[+1]_27 chr8:17016235-17016315 0.0003 26_[+1]_46 chr7:137634640-137634720 0.0003 24_[+1]_48 chr2:169659939-169660019 0.0003 28_[+1]_44 chr2:66660560-66660640 0.0003 30_[+1]_42 chr3:45729703-45729783 0.0003 19_[+1]_53 chr12:125477531-12547761 0.0003 48_[+1]_24 chr3:151920871-151920951 0.0003 46_[+1]_26 chr2:26310999-26311079 0.0003 43_[+1]_29 chr12:54151016-54151096 0.0003 29_[+1]_43 chr1:93434157-93434237 0.0003 43_[+1]_29 chr5:173287782-173287862 0.0003 56_[+1]_16 chr10:95271135-95271215 0.0003 50_[+1]_22 chr15:40399189-40399269 0.0003 47_[+1]_25 chr17:25960670-25960750 0.0003 45_[+1]_27 chr7:12473749-12473829 0.0003 27_[+1]_45 chr19:54276365-54276445 0.00033 48_[+1]_24 chr8:38735602-38735682 0.00033 30_[+1]_42 chr12:63497403-63497483 0.00033 29_[+1]_43 chr6:14317568-14317648 0.00035 22_[+1]_50 chr6:13674852-13674932 0.00035 58_[+1]_14 chr9:132386604-132386684 0.00035 51_[+1]_21 chr2:178052422-178052502 0.00052 25_[+1]_47 chr8:69127584-69127664 0.00052 65_[+1]_7 chr1:29506384-29506464 0.00052 15_[+1]_57 chr4:68563105-68563185 0.00052 28_[+1]_44 chr1:12529591-12529671 0.00052 22_[+1]_50 chr7:156454498-156454578 0.00052 16_[+1]_56 chr8:106337712-106337792 0.00052 46_[+1]_26 chr21:34677037-34677117 0.00052 25_[+1]_47 chr2:191217763-191217843 0.00052 36_[+1]_36 chr1:112199220-112199300 0.00052 51_[+1]_21 chrX:109399602-109399682 0.00052 27_[+1]_45 chr7:25608698-25608778 0.00052 68_[+1]_4 chr7:13156863-13156943 0.00052 48_[+1]_24 chr15:75404737-75404817 0.00052 19_[+1]_53 chr11:62195220-62195300 0.00052 44_[+1]_28 chr19:3700664-3700744 0.00052 26_[+1]_46 chr1:207406144-207406224 0.00052 48_[+1]_24 chr7:101459285-101459365 0.00052 41_[+1]_31 chr2:102954670-102954750 0.00052 40_[+1]_32 chr11:62148339-62148419 0.00052 23_[+1]_49 chr7:65865522-65865602 0.00052 44_[+1]_28 chr11:12790951-12791031 0.00052 29_[+1]_43 chr15:89531749-89531829 0.00052 45_[+1]_27 chrX:8776893-8776973 0.00052 33_[+1]_39 chr16:79636221-79636301 0.00052 35_[+1]_37 chr1:234656899-234656979 0.00052 5_[+1]_67 chr1:196116807-196116887 0.00052 34_[+1]_38 chr8:125199517-125199597 0.00052 39_[+1]_33 chr9:86607518-86607598 0.00052 49_[+1]_23 chr6:28947091-28947171 0.00052 69_[+1]_3 chr3:17464281-17464361 0.00052 37_[+1]_35 chr17:53847858-53847938 0.00052 38_[+1]_34 chr12:52285764-52285844 0.00052 13_[+1]_59 chr18:53191730-53191810 0.00052 35_[+1]_37 chr2:128669470-128669550 0.00052 43_[+1]_29 chr12:130205315-13020539 0.00052 29_[+1]_43 chr6:88410725-88410805 0.00055 31_[+1]_41 chr15:55699798-55699878 0.00055 34_[+1]_38 chr11:58344691-58344771 0.00055 54_[+1]_18 chr9:130830258-130830338 0.00061 58_[+1]_14 chr6:30312102-30312182 0.00061 18_[+1]_54 chr2:188362718-188362798 0.00061 12_[+1]_60 chr3:128197715-128197795 0.00061 38_[+1]_34 chr2:27321627-27321707 0.00061 64_[+1]_8 chr4:38162664-38162744 0.00061 18_[+1]_54 chr9:75172684-75172764 0.00061 10_[+1]_62 chr1:172371162-172371242 0.00061 16_[+1]_56 chr2:63194220-63194300 0.00061 39_[+1]_33 chr6:74170891-74170971 0.00061 21_[+1]_51 chr12:42539616-42539696 0.00078 52_[+1]_20 chr8:41461873-41461953 0.00078 18_[+1]_54 chr5:82373906-82373986 0.00078 38_[+1]_34 chr17:71226423-71226503 0.00078 21_[+1]_51 chr22:22005723-22005803 0.00078 31_[+1]_41 chr2:178076457-178076537 0.00078 37_[+1]_35 chr2:197255055-197255135 0.00078 8_[+1]_64 chr9:19085439-19085519 0.00078 24_[+1]_48 chr5:118357836-118357916 0.00078 61_[+1]_11 chr3:151694302-151694382 0.00078 51_[+1]_21 chr3:156858080-156858160 0.00078 36_[+1]_36 chr3:47926841-47926921 0.00078 35_[+1]_37 chr1:28454238-28454318 0.00078 30_[+1]_42 chr6:147631652-147631732 0.00078 30_[+1]_42 chr12:69742024-69742104 0.00078 24_[+1]_48 chr5:39498589-39498669 0.00078 59_[+1]_13 chr3:193569130-193569210 0.00078 9_[+1]_63 chr1:114219213-114219293 0.00078 65_[+1]_7 chr1:39859898-39859978 0.00078 23_[+1]_49 chr3:24544273-24544353 0.00078 11_[+1]_61 chr16:81232386-81232466 0.00078 13_[+1]_59 chr15:69595891-69595971 0.00078 33_[+1]_39 chr7:76876691-76876771 0.00078 53_[+1]_19 chr3:196264340-196264420 0.00078 [+1]_72 chr19:45699229-45699309 0.00078 34_[+1]_38 chr10:29419272-29419352 0.00078 28_[+1]_44 chr17:1133368-1133448 0.00078 31_[+1]_41 chr15:84234447-84234527 0.00078 29_[+1]_43 chr19:12034579-12034659 0.00084 18_[+1]_54 chr19:5689400-5689480 0.00084 62_[+1]_10 chr22:27041304-27041384 0.0011 12_[+1]_60 chr3:172248639-172248719 0.0011 24_[+1]_48 chr4:151493920-151494000 0.0011 48_[+1]_24 chr3:141173905-141173985 0.0011 18_[+1]_54 chr1:75878511-75878591 0.0011 42_[+1]_30 chr15:23712355-23712435 0.0011 57_[+1]_15 chr2:171253794-171253874 0.0011 58_[+1]_14 chr12:69548570-69548650 0.0011 43_[+1]_29 chr2:12428194-12428274 0.0011 28_[+1]_44 chr15:65326233-65326313 0.0011 39_[+1]_33 chr1:114235704-114235784 0.0011 19_[+1]_53 chr18:33162369-33162449 0.0011 7_[+1]_65 chr20:44437297-44437377 0.0011 2_[+1]_70 chr2:153492310-153492390 0.0011 20_[+1]_52 chr2:170803219-170803299 0.0011 26_[+1]_46 chr7:92441586-92441666 0.0011 71_[+1]_1 chr22:39514025-39514105 0.0011 33_[+1]_39 chr22:32869435-32869515 0.0011 13_[+1]_59 chr5:175965520-175965600 0.0011 44_[+1]_28 chr17:55910871-55910951 0.0011 59_[+1]_13 chr13:111720275-11172035 0.0011 53_[+1]_19 chr16:23976810-23976890 0.0011 45_[+1]_27 chr6:35361207-35361287 0.0014 41_[+1]_31 chr18:57213493-57213573 0.0014 1_[+1]_71 chr11:113484465-11348454 0.0014 22_[+1]_50 chr13:91520741-91520821 0.0014 55_[+1]_17 chr15:69336022-69336102 0.0014 44_[+1]_28 chr1:168188025-168188105 0.0014 32_[+1]_40 chr6:37145580-37145660 0.0014 49_[+1]_23 chr9:75768886-75768966 0.0014 30_[+1]_42 chr3:127889945-127890025 0.0014 53_[+1]_19 chr6:33352466-33352546 0.0014 43_[+1]_29 chr2:188446309-188446389 0.0014 39_[+1]_33 chr11:111475312-11147539 0.0014 37_[+1]_35 chr4:84194161-84194241 0.0014 55_[+1]_17 chr1:109106571-109106651 0.0014 55_[+1]_17 chr1:101664937-101665017 0.0014 22_[+1]_50 chr21:40012055-40012135 0.0014 12_[+1]_60 chr4:123402249-123402329 0.0014 42_[+1]_30 chr3:32975750-32975830 0.0014 17_[+1]_55 chr1:28736351-28736431 0.0016 36_[+1]_36 chr13:46863272-46863352 0.0017 33_[+1]_39 chr2:70528451-70528531 0.0017 49_[+1]_23 chr3:17484904-17484984 0.0017 14_[+1]_58 chr8:130249901-130249981 0.0017 28_[+1]_44 chr3:47952378-47952458 0.0017 58_[+1]_14 chr16:19234743-19234823 0.0017 45_[+1]_27 chr8:38226131-38226211 0.0019 70_[+1]_2 chr2:172455382-172455462 0.0021 16_[+1]_56 chr12:76088786-76088866 0.0022 30_[+1]_42 chr4:113090461-113090541 0.0022 45_[+1]_27 chr11:13950473-13950553 0.0024 54_[+1]_18 chr12:48161108-48161188 0.0026 63_[+1]_9 chr1:193087544-193087624 0.0026 53_[+1]_19 chr18:43802910-43802990 0.0029 68_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KATYRATH width=8 seqs=223 chr1:84899541-84899621 ( 16) TATCGATC 1 chr12:110869888-11086996 ( 11) TATCGATC 1 chr7:22765426-22765506 ( 26) TATCGATC 1 chr12:124662570-12466265 ( 71) TATCGATC 1 chr3:25704906-25704986 ( 22) TATCGATC 1 chr5:90162276-90162356 ( 51) TATCGATC 1 chr8:1710996-1711076 ( 17) TATCGATC 1 chr8:95972237-95972317 ( 18) GATCGATC 1 chr7:152604334-152604414 ( 44) GATCGATC 1 chr12:8223249-8223329 ( 39) TATCGATA 1 chr12:24565042-24565122 ( 19) TATCGATA 1 chr13:25079467-25079547 ( 25) TATCGATA 1 chr9:94166331-94166411 ( 23) TATCGATA 1 chr7:130667139-130667219 ( 68) TATTGATC 1 chr10:22678840-22678920 ( 37) TATTGATC 1 chr21:34025730-34025810 ( 18) TATTGATC 1 chr1:161700283-161700363 ( 60) TATTGATC 1 chr7:103164981-103165061 ( 64) TATTGATC 1 chr7:19787551-19787631 ( 51) TATTGATC 1 chr16:67090229-67090309 ( 59) TATTGATC 1 chr7:30981354-30981434 ( 46) TATTGATC 1 chr20:39779551-39779631 ( 36) TATTGATC 1 chr5:71552648-71552728 ( 39) TATTGATC 1 chrX:154439626-154439706 ( 45) TATTGATC 1 chr1:202555624-202555704 ( 40) TATTGATC 1 chr20:31319282-31319362 ( 18) TATTGATC 1 chr5:172205365-172205445 ( 54) TATTGATC 1 chr1:211750248-211750328 ( 17) TATTGATC 1 chr7:148589374-148589454 ( 29) TATTGATC 1 chr10:43851543-43851623 ( 42) TATTGATC 1 chr19:52690790-52690870 ( 64) TATTGATC 1 chr19:3900039-3900119 ( 63) TATTGATC 1 chr5:114946690-114946770 ( 27) TATTGATC 1 chr6:106594852-106594932 ( 66) TATTGATC 1 chr2:62404708-62404788 ( 36) TATTGATC 1 chr1:167970629-167970709 ( 10) TATTGATC 1 chr16:75048378-75048458 ( 32) TATTGATC 1 chr4:108658324-108658404 ( 62) TATTGATC 1 chr7:130452642-130452722 ( 48) TATTGATC 1 chr2:172931290-172931370 ( 34) TATTGATC 1 chr20:53297121-53297201 ( 17) TATTGATC 1 chr1:3235074-3235154 ( 46) TATTGATC 1 chr4:48901366-48901446 ( 53) TATCGATT 1 chr4:175240441-175240521 ( 26) TATCGATT 1 chr1:40439402-40439482 ( 31) TATCGATT 1 chr21:46496452-46496532 ( 10) AATCGATC 1 chr7:93717189-93717269 ( 29) AATCGATC 1 chr1:109127083-109127163 ( 22) TATCGATT 1 chr9:38334438-38334518 ( 47) AATCGATC 1 chr17:46656348-46656428 ( 42) GATCGATA 1 chr6:100678126-100678206 ( 52) AATCGATC 1 chr6:105851419-105851499 ( 23) AATCGATC 1 chr9:127504140-127504220 ( 40) GATCGATA 1 chr2:25144152-25144232 ( 18) AATCGATC 1 chr7:8803238-8803318 ( 13) TATCGATT 1 chr6:30800767-30800847 ( 65) TATCGATT 1 chr1:171954209-171954289 ( 39) TATCGATT 1 chr19:2724420-2724500 ( 30) TATCAATC 1 chr14:68161633-68161713 ( 57) GATTGATC 1 chr10:89307595-89307675 ( 37) CATCGATC 1 chr10:15484267-15484347 ( 54) GATTGATC 1 chr1:27993933-27994013 ( 18) GATTGATC 1 chr10:22318623-22318703 ( 67) CATCGATC 1 chrX:418139-418219 ( 4) TATCAATC 1 chr11:59197574-59197654 ( 57) GATTGATC 1 chrX:153011970-153012050 ( 64) GATTGATC 1 chr5:88133835-88133915 ( 58) TATCAATC 1 chr22:30841359-30841439 ( 46) TATTGATA 1 chr8:17016235-17016315 ( 27) TATTGATA 1 chr7:137634640-137634720 ( 25) TATTGATA 1 chr2:169659939-169660019 ( 29) TATTGATA 1 chr2:66660560-66660640 ( 31) GATCGATT 1 chr3:45729703-45729783 ( 20) GATCGATT 1 chr12:125477531-12547761 ( 49) GATCGATT 1 chr3:151920871-151920951 ( 47) TATTGATA 1 chr2:26310999-26311079 ( 44) TATTGATA 1 chr12:54151016-54151096 ( 30) GATCGATT 1 chr1:93434157-93434237 ( 44) TATTGATA 1 chr5:173287782-173287862 ( 57) TATTGATA 1 chr10:95271135-95271215 ( 51) TATTGATA 1 chr15:40399189-40399269 ( 48) TATTGATA 1 chr17:25960670-25960750 ( 46) GATCGATT 1 chr7:12473749-12473829 ( 28) TATTGATA 1 chr19:54276365-54276445 ( 49) AATCGATA 1 chr8:38735602-38735682 ( 31) AATCGATA 1 chr12:63497403-63497483 ( 30) AATCGATA 1 chr6:14317568-14317648 ( 23) GATCAATC 1 chr6:13674852-13674932 ( 59) GATCAATC 1 chr9:132386604-132386684 ( 52) GATCAATC 1 chr2:178052422-178052502 ( 26) AATTGATC 1 chr8:69127584-69127664 ( 66) TATTGATT 1 chr1:29506384-29506464 ( 16) TATCAATA 1 chr4:68563105-68563185 ( 29) TATTGATT 1 chr1:12529591-12529671 ( 23) GATTGATA 1 chr7:156454498-156454578 ( 17) TATCAATA 1 chr8:106337712-106337792 ( 47) TATCAATA 1 chr21:34677037-34677117 ( 26) AATTGATC 1 chr2:191217763-191217843 ( 37) TATTGATT 1 chr1:112199220-112199300 ( 52) AATTGATC 1 chrX:109399602-109399682 ( 28) TATTGATT 1 chr7:25608698-25608778 ( 69) TATCAATA 1 chr7:13156863-13156943 ( 49) TATCAATA 1 chr15:75404737-75404817 ( 20) TATCAATA 1 chr11:62195220-62195300 ( 45) AATTGATC 1 chr19:3700664-3700744 ( 27) TATCAATA 1 chr1:207406144-207406224 ( 49) CATCGATA 1 chr7:101459285-101459365 ( 42) GATCGATG 1 chr2:102954670-102954750 ( 41) GATTGATA 1 chr11:62148339-62148419 ( 24) TATCAATA 1 chr7:65865522-65865602 ( 45) TATTGATT 1 chr11:12790951-12791031 ( 30) TATTGATT 1 chr15:89531749-89531829 ( 46) TATTGATT 1 chrX:8776893-8776973 ( 34) TATTGATT 1 chr16:79636221-79636301 ( 36) AATTGATC 1 chr1:234656899-234656979 ( 6) TATTGATT 1 chr1:196116807-196116887 ( 35) TATTGATT 1 chr8:125199517-125199597 ( 40) TATTGATT 1 chr9:86607518-86607598 ( 50) TATTGATT 1 chr6:28947091-28947171 ( 70) TATCAATA 1 chr3:17464281-17464361 ( 38) TATTGATT 1 chr17:53847858-53847938 ( 39) TATTGATT 1 chr12:52285764-52285844 ( 14) TATCAATA 1 chr18:53191730-53191810 ( 36) TATTGATT 1 chr2:128669470-128669550 ( 44) TATTGATT 1 chr12:130205315-13020539 ( 30) TATCAATA 1 chr6:88410725-88410805 ( 32) AATCGATT 1 chr15:55699798-55699878 ( 35) AATCGATT 1 chr11:58344691-58344771 ( 55) AATCGATT 1 chr9:130830258-130830338 ( 59) CATTGATC 1 chr6:30312102-30312182 ( 19) CATTGATC 1 chr2:188362718-188362798 ( 13) TATTAATC 1 chr3:128197715-128197795 ( 39) CATTGATC 1 chr2:27321627-27321707 ( 65) CATTGATC 1 chr4:38162664-38162744 ( 19) CATTGATC 1 chr9:75172684-75172764 ( 11) CATTGATC 1 chr1:172371162-172371242 ( 17) CATTGATC 1 chr2:63194220-63194300 ( 40) CATTGATC 1 chr6:74170891-74170971 ( 22) CATTGATC 1 chr12:42539616-42539696 ( 53) GATCAATA 1 chr8:41461873-41461953 ( 19) GATCAATA 1 chr5:82373906-82373986 ( 39) GATTGATT 1 chr17:71226423-71226503 ( 22) AATCAATC 1 chr22:22005723-22005803 ( 32) GATCAATA 1 chr2:178076457-178076537 ( 38) TATCAATT 1 chr2:197255055-197255135 ( 9) GATCAATA 1 chr9:19085439-19085519 ( 25) GATCAATA 1 chr5:118357836-118357916 ( 62) TATTGATG 1 chr3:151694302-151694382 ( 52) CATCGATT 1 chr3:156858080-156858160 ( 37) GATCAATA 1 chr3:47926841-47926921 ( 36) AATCAATC 1 chr1:28454238-28454318 ( 31) GATCAATA 1 chr6:147631652-147631732 ( 31) GATTGATT 1 chr12:69742024-69742104 ( 25) GATCAATA 1 chr5:39498589-39498669 ( 60) TATCAATT 1 chr3:193569130-193569210 ( 10) GATCAATA 1 chr1:114219213-114219293 ( 66) TATTGATG 1 chr1:39859898-39859978 ( 24) GATTGATT 1 chr3:24544273-24544353 ( 12) GATTGATT 1 chr16:81232386-81232466 ( 14) GATCAATA 1 chr15:69595891-69595971 ( 34) AATCAATC 1 chr7:76876691-76876771 ( 54) GATCAATA 1 chr3:196264340-196264420 ( 1) AATCAATC 1 chr19:45699229-45699309 ( 35) TATTGATG 1 chr10:29419272-29419352 ( 29) GATCAATA 1 chr17:1133368-1133448 ( 32) GATTGATT 1 chr15:84234447-84234527 ( 30) TATTGATG 1 chr19:12034579-12034659 ( 19) AATCGATG 1 chr19:5689400-5689480 ( 63) AATTGATA 1 chr22:27041304-27041384 ( 13) GATCAATT 1 chr3:172248639-172248719 ( 25) CATTGATA 1 chr4:151493920-151494000 ( 49) CATTGATA 1 chr3:141173905-141173985 ( 19) CATCGATG 1 chr1:75878511-75878591 ( 43) CATTGATA 1 chr15:23712355-23712435 ( 58) GATCAATT 1 chr2:171253794-171253874 ( 59) TATCAATG 1 chr12:69548570-69548650 ( 44) TATCAATG 1 chr2:12428194-12428274 ( 29) AATCAATA 1 chr15:65326233-65326313 ( 40) AATTGATT 1 chr1:114235704-114235784 ( 20) AATCAATA 1 chr18:33162369-33162449 ( 8) AATCAATA 1 chr20:44437297-44437377 ( 3) AATCAATA 1 chr2:153492310-153492390 ( 21) AATCAATA 1 chr2:170803219-170803299 ( 27) AATTGATT 1 chr7:92441586-92441666 ( 72) AATCAATA 1 chr22:39514025-39514105 ( 34) AATTGATT 1 chr22:32869435-32869515 ( 14) AATCAATA 1 chr5:175965520-175965600 ( 45) AATCAATA 1 chr17:55910871-55910951 ( 60) AATCAATA 1 chr13:111720275-11172035 ( 54) AATCAATA 1 chr16:23976810-23976890 ( 46) AATCAATA 1 chr6:35361207-35361287 ( 42) CATCAATA 1 chr18:57213493-57213573 ( 2) CATCAATA 1 chr11:113484465-11348454 ( 23) GATCAATG 1 chr13:91520741-91520821 ( 56) CATCAATA 1 chr15:69336022-69336102 ( 45) GATCAATG 1 chr1:168188025-168188105 ( 33) GATCAATG 1 chr6:37145580-37145660 ( 50) GATCAATG 1 chr9:75768886-75768966 ( 31) GATCAATG 1 chr3:127889945-127890025 ( 54) GATCAATG 1 chr6:33352466-33352546 ( 44) CATTGATT 1 chr2:188446309-188446389 ( 40) GATCAATG 1 chr11:111475312-11147539 ( 38) GATCAATG 1 chr4:84194161-84194241 ( 56) CATTGATT 1 chr1:109106571-109106651 ( 56) CATCAATA 1 chr1:101664937-101665017 ( 23) GATCAATG 1 chr21:40012055-40012135 ( 13) AATCAATT 1 chr4:123402249-123402329 ( 43) AATCAATT 1 chr3:32975750-32975830 ( 18) AATCAATT 1 chr1:28736351-28736431 ( 37) CATCAATT 1 chr13:46863272-46863352 ( 34) AATCAATG 1 chr2:70528451-70528531 ( 50) AATCAATG 1 chr3:17484904-17484984 ( 15) AATCAATG 1 chr8:130249901-130249981 ( 29) AATCAATG 1 chr3:47952378-47952458 ( 59) AATCAATG 1 chr16:19234743-19234823 ( 46) AATCAATG 1 chr8:38226131-38226211 ( 71) TATCTATC 1 chr2:172455382-172455462 ( 17) TATTTATC 1 chr12:76088786-76088866 ( 31) GATCTATA 1 chr4:113090461-113090541 ( 46) GATCTATA 1 chr11:13950473-13950553 ( 55) AATCTATA 1 chr12:48161108-48161188 ( 64) TATTTATT 1 chr1:193087544-193087624 ( 54) CATCTATA 1 chr18:43802910-43802990 ( 69) AATCTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.94427 E= 2.3e-143 -45 -85 14 58 177 -1444 -1444 -1444 -1444 -1444 -1444 173 -1444 147 -1444 55 18 -1444 164 -307 177 -1444 -1444 -1444 -1444 -1444 -1444 173 8 79 -86 -40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 223 E= 2.3e-143 0.215247 0.112108 0.224215 0.448430 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.560538 0.000000 0.439462 0.331839 0.000000 0.632287 0.035874 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.309417 0.349776 0.112108 0.228700 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATYRATH MEME-1 regular expression -------------------------------------------------------------------------------- [TGA]AT[CT][GA]AT[CAT] -------------------------------------------------------------------------------- Time 4.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCMCCTR MEME-2 width = 8 sites = 22 llr = 201 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::6:::3 pos.-specific C :aa46a:: probability G a:::1::5 matrix T ::::3:a2 bits 2.3 ** * 2.1 *** * 1.8 *** ** 1.6 *** ** Relative 1.4 *** ** Entropy 1.2 *** ** (13.2 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCACCTG consensus CT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:153492310-153492390 56 1.04e-05 ACAAAAGGCT GCCCCCTG CTGGAGAGTC chr1:29535111-29535191 58 1.04e-05 cttgcccaga gccccctg gcttatctag chr22:39514025-39514105 55 1.04e-05 gtcacattct gccccctg gaggctgcct chr6:74170891-74170971 37 1.04e-05 ATCGTAGGTG GCCACCTG GCGATAAGGA chr9:132386604-132386684 3 1.04e-05 CT GCCCCCTG GCGGAGGATT chr12:48161108-48161188 1 2.55e-05 . GCCCCCTA GAGCCAGGGT chr22:32869435-32869515 65 2.55e-05 GACAAGTGCT GCCACCTA TTGGGAGA chr12:120097267-12009734 12 2.55e-05 GCTCTTTATT GCCACCTA GGGGATGCTA chr11:59197574-59197654 10 2.55e-05 AATGTTGCT GCCACCTA GTGGAAATAT chr4:108658324-108658404 14 2.55e-05 ccactttgct gccaccta ctggggaatc chr17:57243393-57243473 46 4.10e-05 CATTAGGGGT GCCCTCTG CAAATCATGG chr2:63194220-63194300 55 4.10e-05 ATCCAGGTCC GCCATCTG GCTGTGTGTG chr3:32975750-32975830 73 4.10e-05 TGTACCTGCT GCCATCTG chr19:45699229-45699309 14 4.10e-05 cggtgaccaa gccatctg ctagtcattc chr7:156454498-156454578 28 5.65e-05 ATCAATAACT GCCACCTT AAACATAATA chr16:79636221-79636301 10 5.65e-05 CTCAACAGC GCCACCTT TCGGCAAAGG chr2:25144152-25144232 73 5.65e-05 CTGAAAAGGC GCCACCTT chr14:68161633-68161713 15 6.70e-05 CGGTTTTACA GCCCGCTG CTGATTCACT chr10:43851543-43851623 58 6.70e-05 tctgggtggt gccagctg atccacaagt chr17:55910871-55910951 8 8.93e-05 GTCCAGC GCCATCTA GTGGTGCTGA chr4:40553019-40553099 25 1.12e-04 TGAACAAGCT GCCCTCTT GTGGTTCTGA chr7:76876691-76876771 23 1.42e-04 GCACACTACT ACCCCCTG GTGGCAGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:153492310-153492390 1e-05 55_[+2]_17 chr1:29535111-29535191 1e-05 57_[+2]_15 chr22:39514025-39514105 1e-05 54_[+2]_18 chr6:74170891-74170971 1e-05 36_[+2]_36 chr9:132386604-132386684 1e-05 2_[+2]_70 chr12:48161108-48161188 2.6e-05 [+2]_72 chr22:32869435-32869515 2.6e-05 64_[+2]_8 chr12:120097267-12009734 2.6e-05 11_[+2]_61 chr11:59197574-59197654 2.6e-05 9_[+2]_63 chr4:108658324-108658404 2.6e-05 13_[+2]_59 chr17:57243393-57243473 4.1e-05 45_[+2]_27 chr2:63194220-63194300 4.1e-05 54_[+2]_18 chr3:32975750-32975830 4.1e-05 72_[+2] chr19:45699229-45699309 4.1e-05 13_[+2]_59 chr7:156454498-156454578 5.7e-05 27_[+2]_45 chr16:79636221-79636301 5.7e-05 9_[+2]_63 chr2:25144152-25144232 5.7e-05 72_[+2] chr14:68161633-68161713 6.7e-05 14_[+2]_58 chr10:43851543-43851623 6.7e-05 57_[+2]_15 chr17:55910871-55910951 8.9e-05 7_[+2]_65 chr4:40553019-40553099 0.00011 24_[+2]_48 chr7:76876691-76876771 0.00014 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCMCCTR width=8 seqs=22 chr2:153492310-153492390 ( 56) GCCCCCTG 1 chr1:29535111-29535191 ( 58) GCCCCCTG 1 chr22:39514025-39514105 ( 55) GCCCCCTG 1 chr6:74170891-74170971 ( 37) GCCACCTG 1 chr9:132386604-132386684 ( 3) GCCCCCTG 1 chr12:48161108-48161188 ( 1) GCCCCCTA 1 chr22:32869435-32869515 ( 65) GCCACCTA 1 chr12:120097267-12009734 ( 12) GCCACCTA 1 chr11:59197574-59197654 ( 10) GCCACCTA 1 chr4:108658324-108658404 ( 14) GCCACCTA 1 chr17:57243393-57243473 ( 46) GCCCTCTG 1 chr2:63194220-63194300 ( 55) GCCATCTG 1 chr3:32975750-32975830 ( 73) GCCATCTG 1 chr19:45699229-45699309 ( 14) GCCATCTG 1 chr7:156454498-156454578 ( 28) GCCACCTT 1 chr16:79636221-79636301 ( 10) GCCACCTT 1 chr2:25144152-25144232 ( 73) GCCACCTT 1 chr14:68161633-68161713 ( 15) GCCCGCTG 1 chr10:43851543-43851623 ( 58) GCCAGCTG 1 chr17:55910871-55910951 ( 8) GCCATCTA 1 chr4:40553019-40553099 ( 25) GCCCTCTT 1 chr7:76876691-76876771 ( 23) ACCCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 4.1e+000 -269 -1110 223 -1110 -1110 230 -1110 -1110 -1110 230 -1110 -1110 101 101 -1110 -1110 -1110 165 -116 -14 -1110 230 -1110 -1110 -1110 -1110 -1110 173 -10 -1110 142 -73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.1e+000 0.045455 0.000000 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.590909 0.409091 0.000000 0.000000 0.000000 0.636364 0.090909 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.272727 0.000000 0.545455 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCMCCTR MEME-2 regular expression -------------------------------------------------------------------------------- GCC[AC][CT]CT[GA] -------------------------------------------------------------------------------- Time 8.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GRKGGCRS MEME-3 width = 8 sites = 19 llr = 179 E-value = 4.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :5::::5: pos.-specific C :::::a:5 probability G a55aa:55 matrix T ::5::::: bits 2.3 * *** 2.1 * *** 1.8 * *** 1.6 * *** Relative 1.4 * *** * Entropy 1.2 ** *** * (13.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCAG consensus AT GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:159139622-159139702 55 5.77e-06 GCAAGCCTGT GGGGGCGC TCTTCCCCCG chr3:196264340-196264420 50 5.77e-06 TGTGTCGCTA GGGGGCGC TGAACCTTTA chr19:12034579-12034659 54 9.93e-06 ATAACCTGCA GGGGGCAG CAGAGCCCAA chr2:188446309-188446389 14 1.41e-05 ccttccacca gggggcac ttcattttgg chr9:19085439-19085519 61 2.67e-05 ATTTCCTGAA GAGGGCGC TAACCTTTAC chr15:84234447-84234527 73 2.67e-05 GGAACCAATA GAGGGCGC chr12:42539616-42539696 3 3.10e-05 AA GGTGGCGC TAGAGTCTTG chr12:125477531-12547761 22 3.10e-05 atccatcgca ggtggcgc tggtacttcc chr2:27321627-27321707 31 3.10e-05 tccaccccaa ggtggcgc tcaaggcttt chr12:69548570-69548650 17 3.10e-05 gctaccacaa ggtggcgc tgcctgccat chr3:127889945-127890025 19 3.70e-05 TGGTGCACAA GAGGGCAG TATTTGCTTA chr1:161700283-161700363 24 3.70e-05 CTTTTAAGAG GAGGGCAG GATCAAGATG chr2:70528451-70528531 32 3.70e-05 AATTCCACCA GAGGGCAG CCGACCCACT chr2:188362718-188362798 73 3.70e-05 TTTGCCTCTA GAGGGCAG chr7:19787551-19787631 16 4.92e-05 CCTACCACTT GGTGGCAG TAGCTCCCAA chr5:90162276-90162356 15 4.92e-05 AATATCAGTA GGTGGCAG TAGAAGATTT chr7:101459285-101459365 25 6.15e-05 TATGTCTCAA GATGGCGG CCAATGTGGG chr4:73192586-73192666 27 7.66e-05 ATTTCCAGCA GATGGCAG TATGCATGCT chr3:128197715-128197795 11 7.66e-05 AGGTGTCTCT GATGGCAG GCTCTCATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:159139622-159139702 5.8e-06 54_[+3]_18 chr3:196264340-196264420 5.8e-06 49_[+3]_23 chr19:12034579-12034659 9.9e-06 53_[+3]_19 chr2:188446309-188446389 1.4e-05 13_[+3]_59 chr9:19085439-19085519 2.7e-05 60_[+3]_12 chr15:84234447-84234527 2.7e-05 72_[+3] chr12:42539616-42539696 3.1e-05 2_[+3]_70 chr12:125477531-12547761 3.1e-05 21_[+3]_51 chr2:27321627-27321707 3.1e-05 30_[+3]_42 chr12:69548570-69548650 3.1e-05 16_[+3]_56 chr3:127889945-127890025 3.7e-05 18_[+3]_54 chr1:161700283-161700363 3.7e-05 23_[+3]_49 chr2:70528451-70528531 3.7e-05 31_[+3]_41 chr2:188362718-188362798 3.7e-05 72_[+3] chr7:19787551-19787631 4.9e-05 15_[+3]_57 chr5:90162276-90162356 4.9e-05 14_[+3]_58 chr7:101459285-101459365 6.1e-05 24_[+3]_48 chr4:73192586-73192666 7.7e-05 26_[+3]_46 chr3:128197715-128197795 7.7e-05 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRKGGCRS width=8 seqs=19 chr6:159139622-159139702 ( 55) GGGGGCGC 1 chr3:196264340-196264420 ( 50) GGGGGCGC 1 chr19:12034579-12034659 ( 54) GGGGGCAG 1 chr2:188446309-188446389 ( 14) GGGGGCAC 1 chr9:19085439-19085519 ( 61) GAGGGCGC 1 chr15:84234447-84234527 ( 73) GAGGGCGC 1 chr12:42539616-42539696 ( 3) GGTGGCGC 1 chr12:125477531-12547761 ( 22) GGTGGCGC 1 chr2:27321627-27321707 ( 31) GGTGGCGC 1 chr12:69548570-69548650 ( 17) GGTGGCGC 1 chr3:127889945-127890025 ( 19) GAGGGCAG 1 chr1:161700283-161700363 ( 24) GAGGGCAG 1 chr2:70528451-70528531 ( 32) GAGGGCAG 1 chr2:188362718-188362798 ( 73) GAGGGCAG 1 chr7:19787551-19787631 ( 16) GGTGGCAG 1 chr5:90162276-90162356 ( 15) GGTGGCAG 1 chr7:101459285-101459365 ( 25) GATGGCGG 1 chr4:73192586-73192666 ( 27) GATGGCAG 1 chr3:128197715-128197795 ( 11) GATGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 4.5e+001 -1089 -1089 230 -1089 69 -1089 137 -1089 -1089 -1089 137 65 -1089 -1089 230 -1089 -1089 -1089 230 -1089 -1089 230 -1089 -1089 84 -1089 122 -1089 -1089 122 137 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.5e+001 0.000000 0.000000 1.000000 0.000000 0.473684 0.000000 0.526316 0.000000 0.000000 0.000000 0.526316 0.473684 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.526316 0.000000 0.473684 0.000000 0.000000 0.473684 0.526316 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCRS MEME-3 regular expression -------------------------------------------------------------------------------- G[GA][GT]GGC[AG][GC] -------------------------------------------------------------------------------- Time 11.75 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTGATYA MEME-4 width = 8 sites = 38 llr = 309 E-value = 2.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:::a::6 pos.-specific C ::::::4: probability G :1:a::22 matrix T :9a::a42 bits 2.3 * 2.1 * 1.8 * **** 1.6 * **** Relative 1.4 ****** Entropy 1.2 ****** (11.7 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTGATCA consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:30981354-30981434 19 2.83e-05 ctatctatta attgatca atcgatcaat chr7:152604334-152604414 61 2.83e-05 cgatctatTG ATTGATCA ATTGCTCTCT chr6:100678126-100678206 18 2.83e-05 AGCACACAGC ATTGATCA AATGGCTAAT chr7:148589374-148589454 11 2.83e-05 taagtggtat attgatca attgatcgta chr19:3900039-3900119 48 2.83e-05 gaTAATCAAC ATTGatca ataacaatat chr2:62404708-62404788 52 2.83e-05 TCACCAAGCT ATTGATCA GCCAGGACTT chr1:167970629-167970709 38 2.83e-05 ACACTTTATa attgatca gtgaacttgg chr8:1710996-1711076 55 2.83e-05 aggaacgtgt attgatca tcaattaagt chr1:3235074-3235154 66 2.83e-05 ctatcagtcg attgatca tctatca chr7:65865522-65865602 63 7.02e-05 accaattgat attgatta ccaataatat chr1:196116807-196116887 22 7.02e-05 TCATGCttgt attgatta ttgcctattg chr7:8803238-8803318 28 7.02e-05 attcctcact attgatta ggtttcttat chr3:17464281-17464361 73 7.02e-05 ATACAAAATT ATTGATTA chr18:53191730-53191810 67 7.02e-05 TGATTAAGTT ATTGATTA AGTAAA chr20:53297121-53297201 36 7.02e-05 TTATCGATTG ATTGATTA TTGATTGTCC chrX:153011970-153012050 24 7.02e-05 TTGATAGATT ATTGATTA TAGATTAATA chr4:68563105-68563185 16 9.85e-05 attcaatcct attgatga atatatattg chr3:128197715-128197795 72 9.85e-05 GGTGCCTATC ATTGATGA C chr21:46496452-46496532 30 9.85e-05 GCTCTGAGAA ATTGATGA CACATGTGTC chr7:12473749-12473829 42 9.85e-05 GATAATAAAT ATTGATGA ACTGTATTAA chr2:63194220-63194300 21 1.18e-04 TATCAAATGC ATTGATCG TGGCATGTGT chr7:130667139-130667219 28 1.47e-04 GCACAGAAGG ATTGATCT TATTCGAAAC chr1:211750248-211750328 50 1.47e-04 GATAAAAAGT ATTGATCT TTTGAAATTA chr19:52690790-52690870 17 1.47e-04 TATCACTGGC ATTGATCT GTATAGGTAT chr16:75048378-75048458 45 1.47e-04 tgatctattt attgatct attgatctat chr6:147631652-147631732 20 1.76e-04 aaagtgattg attgattg attgattgat chr1:39859898-39859978 41 1.76e-04 tgattgattg attgattg atttattgCC chr8:125199517-125199597 57 1.76e-04 taattgattg attgattg attggttggt chr17:1133368-1133448 14 1.76e-04 tgatggattg attgattg atgattgatt chr2:66660560-66660640 47 2.19e-04 TTATTTGATA ATTGATTT TCCCCGCAGC chr13:25079467-25079547 52 2.19e-04 catgatttgt attgattt gtacaataag chr7:130452642-130452722 30 2.19e-04 atcaataatt attgattt aataactgat chr3:58885807-58885887 35 2.38e-04 aatgggtggg agtgatca gtgaggtgaa chr6:74170891-74170971 10 2.38e-04 ATAAGGCAA AGTGATCA AATTCATTGA chr10:89307595-89307675 3 2.58e-04 TG ATTGATGG CTCTGTGGCA chr21:34677037-34677117 6 3.15e-04 ATGAA ATTGATGT TTCAGTTGAC chr18:43802910-43802990 50 3.15e-04 CTTGCTTATC AGTGATTA TTGCTTGTAG chr2:128669470-128669550 31 3.15e-04 TAATTTCCAG AGTGATTA TAGATTATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:30981354-30981434 2.8e-05 18_[+4]_54 chr7:152604334-152604414 2.8e-05 60_[+4]_12 chr6:100678126-100678206 2.8e-05 17_[+4]_55 chr7:148589374-148589454 2.8e-05 10_[+4]_62 chr19:3900039-3900119 2.8e-05 47_[+4]_25 chr2:62404708-62404788 2.8e-05 51_[+4]_21 chr1:167970629-167970709 2.8e-05 37_[+4]_35 chr8:1710996-1711076 2.8e-05 54_[+4]_18 chr1:3235074-3235154 2.8e-05 65_[+4]_7 chr7:65865522-65865602 7e-05 62_[+4]_10 chr1:196116807-196116887 7e-05 21_[+4]_51 chr7:8803238-8803318 7e-05 27_[+4]_45 chr3:17464281-17464361 7e-05 72_[+4] chr18:53191730-53191810 7e-05 66_[+4]_6 chr20:53297121-53297201 7e-05 35_[+4]_37 chrX:153011970-153012050 7e-05 23_[+4]_49 chr4:68563105-68563185 9.8e-05 15_[+4]_57 chr3:128197715-128197795 9.8e-05 71_[+4]_1 chr21:46496452-46496532 9.8e-05 29_[+4]_43 chr7:12473749-12473829 9.8e-05 41_[+4]_31 chr2:63194220-63194300 0.00012 20_[+4]_52 chr7:130667139-130667219 0.00015 27_[+4]_45 chr1:211750248-211750328 0.00015 49_[+4]_23 chr19:52690790-52690870 0.00015 16_[+4]_56 chr16:75048378-75048458 0.00015 44_[+4]_28 chr6:147631652-147631732 0.00018 19_[+4]_53 chr1:39859898-39859978 0.00018 40_[+4]_32 chr8:125199517-125199597 0.00018 56_[+4]_16 chr17:1133368-1133448 0.00018 13_[+4]_59 chr2:66660560-66660640 0.00022 46_[+4]_26 chr13:25079467-25079547 0.00022 51_[+4]_21 chr7:130452642-130452722 0.00022 29_[+4]_43 chr3:58885807-58885887 0.00024 34_[+4]_38 chr6:74170891-74170971 0.00024 9_[+4]_63 chr10:89307595-89307675 0.00026 2_[+4]_70 chr21:34677037-34677117 0.00032 5_[+4]_67 chr18:43802910-43802990 0.00032 49_[+4]_23 chr2:128669470-128669550 0.00032 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTGATYA width=8 seqs=38 chr7:30981354-30981434 ( 19) ATTGATCA 1 chr7:152604334-152604414 ( 61) ATTGATCA 1 chr6:100678126-100678206 ( 18) ATTGATCA 1 chr7:148589374-148589454 ( 11) ATTGATCA 1 chr19:3900039-3900119 ( 48) ATTGATCA 1 chr2:62404708-62404788 ( 52) ATTGATCA 1 chr1:167970629-167970709 ( 38) ATTGATCA 1 chr8:1710996-1711076 ( 55) ATTGATCA 1 chr1:3235074-3235154 ( 66) ATTGATCA 1 chr7:65865522-65865602 ( 63) ATTGATTA 1 chr1:196116807-196116887 ( 22) ATTGATTA 1 chr7:8803238-8803318 ( 28) ATTGATTA 1 chr3:17464281-17464361 ( 73) ATTGATTA 1 chr18:53191730-53191810 ( 67) ATTGATTA 1 chr20:53297121-53297201 ( 36) ATTGATTA 1 chrX:153011970-153012050 ( 24) ATTGATTA 1 chr4:68563105-68563185 ( 16) ATTGATGA 1 chr3:128197715-128197795 ( 72) ATTGATGA 1 chr21:46496452-46496532 ( 30) ATTGATGA 1 chr7:12473749-12473829 ( 42) ATTGATGA 1 chr2:63194220-63194300 ( 21) ATTGATCG 1 chr7:130667139-130667219 ( 28) ATTGATCT 1 chr1:211750248-211750328 ( 50) ATTGATCT 1 chr19:52690790-52690870 ( 17) ATTGATCT 1 chr16:75048378-75048458 ( 45) ATTGATCT 1 chr6:147631652-147631732 ( 20) ATTGATTG 1 chr1:39859898-39859978 ( 41) ATTGATTG 1 chr8:125199517-125199597 ( 57) ATTGATTG 1 chr17:1133368-1133448 ( 14) ATTGATTG 1 chr2:66660560-66660640 ( 47) ATTGATTT 1 chr13:25079467-25079547 ( 52) ATTGATTT 1 chr7:130452642-130452722 ( 30) ATTGATTT 1 chr3:58885807-58885887 ( 35) AGTGATCA 1 chr6:74170891-74170971 ( 10) AGTGATCA 1 chr10:89307595-89307675 ( 3) ATTGATGG 1 chr21:34677037-34677117 ( 6) ATTGATGT 1 chr18:43802910-43802990 ( 50) AGTGATTA 1 chr2:128669470-128669550 ( 31) AGTGATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 2.6e-001 177 -1189 -1189 -1189 -1189 -1189 -95 157 -1189 -1189 -1189 173 -1189 -1189 230 -1189 177 -1189 -1189 -1189 -1189 -1189 -1189 173 -1189 105 -36 49 111 -1189 -36 -51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.6e-001 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.894737 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.421053 0.157895 0.421053 0.631579 0.000000 0.157895 0.210526 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGATYA MEME-4 regular expression -------------------------------------------------------------------------------- ATTGAT[CT][AT] -------------------------------------------------------------------------------- Time 15.09 secs. ******************************************************************************** ******************************************************************************** MOTIF AATCAATA MEME-5 width = 8 sites = 25 llr = 217 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8a::aa:9 pos.-specific C ::19:::1 probability G 2::1:::: matrix T ::9:::a: bits 2.3 2.1 1.8 * **** 1.6 * **** Relative 1.4 ****** Entropy 1.2 ******** (12.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATCAATA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:71226423-71226503 42 3.97e-05 ccaatcaatc aatcaatA AGCAGGGACT chr12:124662570-12466265 55 3.97e-05 aggaggaaTC AATCAATA tatctattta chr2:170803219-170803299 55 3.97e-05 AATTACCAGT AATCAATA AATAACCAGT chr7:92441586-92441666 55 3.97e-05 tctcttagGT AATCAATA ATATCCAATA chrX:8776893-8776973 21 3.97e-05 tgtgattaat aatcaata attattattg chr10:95271135-95271215 19 3.97e-05 AAACTAATAC AATCAATA TTTATGATAG chr19:3900039-3900119 12 3.97e-05 acaattgatg aatcaata ttgatactat chr7:130452642-130452722 19 3.97e-05 attgataggt aatcaata attattgatt chr12:63497403-63497483 9 3.97e-05 tagaagac aatcaata catCATATCT chr18:53191730-53191810 48 3.97e-05 TTGATTAAGT AATCAATA TTGATTAAGT chr2:128669470-128669550 55 3.97e-05 ATTGATtgca aatcaata agacaaaaaa chr12:130205315-13020539 62 3.97e-05 ATCACCTATA AATCAATA ATCAACTCAT chr5:88133835-88133915 17 3.97e-05 TTAGAGCTAT AATCAata tcaatatatc chr3:156858080-156858160 45 6.72e-05 ttgatcaata gatcaata tttgcaatat chrX:154439626-154439706 58 6.72e-05 TGATCAACTT GATCAATA AATAATGATC chr3:193569130-193569210 61 6.72e-05 TACTACCTTA GATCAATA ctgtgtgctc chr1:27993933-27994013 10 6.72e-05 TAATAAATA GATCAATA GATTGATCAA chr6:37145580-37145660 31 9.40e-05 GGAATCAGAT AACCAATA AGTCTGCGGG chr15:84234447-84234527 65 9.40e-05 AAATTATAGG AACCAATA GAGGGCGC chr15:69595891-69595971 42 1.22e-04 tcaatcaatc aatcaatc agtcagtcaa chr13:111720275-11172035 24 1.40e-04 TGCTGCTGGT GACCAATA GGGGGTGTTA chr10:22678840-22678920 27 1.80e-04 aatgtgtgct aatgaata aatATTGATC chr5:175965520-175965600 21 1.80e-04 CAGGTCGAAT AATGAATA TTGGGTGCAT chr13:91520741-91520821 44 2.26e-04 TTATCAGTTA AATCAATG ATTTCATCAA chr7:30981354-30981434 30 2.26e-04 ttgatcaatc gatcaatc caccaattta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:71226423-71226503 4e-05 41_[+5]_31 chr12:124662570-12466265 4e-05 54_[+5]_18 chr2:170803219-170803299 4e-05 54_[+5]_18 chr7:92441586-92441666 4e-05 54_[+5]_18 chrX:8776893-8776973 4e-05 20_[+5]_52 chr10:95271135-95271215 4e-05 18_[+5]_54 chr19:3900039-3900119 4e-05 11_[+5]_61 chr7:130452642-130452722 4e-05 18_[+5]_54 chr12:63497403-63497483 4e-05 8_[+5]_64 chr18:53191730-53191810 4e-05 47_[+5]_25 chr2:128669470-128669550 4e-05 54_[+5]_18 chr12:130205315-13020539 4e-05 61_[+5]_11 chr5:88133835-88133915 4e-05 16_[+5]_56 chr3:156858080-156858160 6.7e-05 44_[+5]_28 chrX:154439626-154439706 6.7e-05 57_[+5]_15 chr3:193569130-193569210 6.7e-05 60_[+5]_12 chr1:27993933-27994013 6.7e-05 9_[+5]_63 chr6:37145580-37145660 9.4e-05 30_[+5]_42 chr15:84234447-84234527 9.4e-05 64_[+5]_8 chr15:69595891-69595971 0.00012 41_[+5]_31 chr13:111720275-11172035 0.00014 23_[+5]_49 chr10:22678840-22678920 0.00018 26_[+5]_46 chr5:175965520-175965600 0.00018 20_[+5]_52 chr13:91520741-91520821 0.00023 43_[+5]_29 chr7:30981354-30981434 0.00023 29_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATCAATA width=8 seqs=25 chr17:71226423-71226503 ( 42) AATCAATA 1 chr12:124662570-12466265 ( 55) AATCAATA 1 chr2:170803219-170803299 ( 55) AATCAATA 1 chr7:92441586-92441666 ( 55) AATCAATA 1 chrX:8776893-8776973 ( 21) AATCAATA 1 chr10:95271135-95271215 ( 19) AATCAATA 1 chr19:3900039-3900119 ( 12) AATCAATA 1 chr7:130452642-130452722 ( 19) AATCAATA 1 chr12:63497403-63497483 ( 9) AATCAATA 1 chr18:53191730-53191810 ( 48) AATCAATA 1 chr2:128669470-128669550 ( 55) AATCAATA 1 chr12:130205315-13020539 ( 62) AATCAATA 1 chr5:88133835-88133915 ( 17) AATCAATA 1 chr3:156858080-156858160 ( 45) GATCAATA 1 chrX:154439626-154439706 ( 58) GATCAATA 1 chr3:193569130-193569210 ( 61) GATCAATA 1 chr1:27993933-27994013 ( 10) GATCAATA 1 chr6:37145580-37145660 ( 31) AACCAATA 1 chr15:84234447-84234527 ( 65) AACCAATA 1 chr15:69595891-69595971 ( 42) AATCAATC 1 chr13:111720275-11172035 ( 24) GACCAATA 1 chr10:22678840-22678920 ( 27) AATGAATA 1 chr5:175965520-175965600 ( 21) AATGAATA 1 chr13:91520741-91520821 ( 44) AATCAATG 1 chr7:30981354-30981434 ( 30) GATCAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.1e+002 137 -1129 24 -1129 177 -1129 -1129 -1129 -1129 -76 -1129 155 -1129 218 -135 -1129 177 -1129 -1129 -1129 177 -1129 -1129 -1129 -1129 -1129 -1129 173 159 -134 -234 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.1e+002 0.760000 0.000000 0.240000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.120000 0.000000 0.880000 0.000000 0.920000 0.080000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.880000 0.080000 0.040000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCAATA MEME-5 regular expression -------------------------------------------------------------------------------- [AG]ATCAATA -------------------------------------------------------------------------------- Time 18.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:171954209-171954289 3.95e-02 80 chr16:23976810-23976890 2.02e-02 45_[+5(3.97e-05)]_27 chr1:3235074-3235154 1.63e-03 16_[+4(7.02e-05)]_22_[+4(2.83e-05)]_\ 11_[+4(2.83e-05)]_7 chr1:101664937-101665017 1.06e-01 80 chr13:111720275-11172035 1.30e-03 53_[+5(3.97e-05)]_19 chr5:88133835-88133915 1.74e-02 16_[+5(3.97e-05)]_25_[+5(6.72e-05)]_\ 23 chr7:12473749-12473829 1.10e-02 41_[+4(9.85e-05)]_31 chr15:84234447-84234527 1.42e-05 30_[+4(9.85e-05)]_26_[+5(9.40e-05)]_\ [+3(2.67e-05)] chrX:153011970-153012050 8.20e-03 23_[+4(7.02e-05)]_49 chr20:53297121-53297201 5.60e-04 17_[+4(2.83e-05)]_10_[+4(7.02e-05)]_\ 37 chr12:130205315-13020539 3.16e-03 36_[+5(3.97e-05)]_17_[+5(3.97e-05)]_\ 11 chr2:128669470-128669550 1.72e-03 54_[+5(3.97e-05)]_18 chr18:53191730-53191810 1.28e-03 36_[+4(7.02e-05)]_3_[+5(3.97e-05)]_\ 11_[+4(7.02e-05)]_6 chr12:63497403-63497483 1.96e-02 8_[+5(3.97e-05)]_64 chr2:172931290-172931370 2.88e-02 33_[+1(9.01e-05)]_39 chr7:130452642-130452722 1.52e-04 18_[+5(3.97e-05)]_22_[+4(2.83e-05)]_\ 24 chr17:1133368-1133448 8.97e-03 17_[+4(9.85e-05)]_55 chr9:132386604-132386684 1.46e-04 2_[+2(1.04e-05)]_70 chr17:55910871-55910951 7.97e-04 7_[+2(8.93e-05)]_44_[+5(3.97e-05)]_\ 13 chr11:58344691-58344771 9.51e-02 80 chr10:29419272-29419352 2.69e-02 28_[+5(6.72e-05)]_44 chr4:108658324-108658404 1.43e-05 13_[+2(2.55e-05)]_41_[+4(2.83e-05)]_\ 10 chr11:59197574-59197654 1.23e-04 9_[+2(2.55e-05)]_40_[+4(2.83e-05)]_\ 15 chr12:120097267-12009734 6.29e-03 11_[+2(2.55e-05)]_61 chr16:75048378-75048458 2.01e-02 31_[+1(9.01e-05)]_4_[+1(9.01e-05)]_\ [+1(9.01e-05)]_21 chr12:52285764-52285844 9.82e-02 80 chr6:30800767-30800847 4.87e-03 80 chr17:53847858-53847938 2.08e-02 39_[+4(7.02e-05)]_33 chr8:1710996-1711076 1.04e-03 16_[+1(1.96e-05)]_30_[+4(2.83e-05)]_\ 18 chr5:175965520-175965600 2.02e-02 44_[+5(3.97e-05)]_28 chr1:167970629-167970709 1.97e-03 10_[+4(2.83e-05)]_19_[+4(2.83e-05)]_\ 12_[+4(2.83e-05)]_15 chr8:38735602-38735682 5.17e-02 80 chr3:17464281-17464361 4.53e-02 31_[+4(7.02e-05)]_33_[+4(7.02e-05)] chr7:8803238-8803318 9.12e-03 27_[+4(7.02e-05)]_45 chr1:109106571-109106651 1.69e-02 80 chr2:25144152-25144232 1.89e-03 72_[+2(5.65e-05)] chr2:62404708-62404788 5.58e-03 36_[+4(2.83e-05)]_7_[+4(2.83e-05)]_\ 10_[+4(2.83e-05)]_3 chr19:45699229-45699309 7.17e-04 13_[+2(4.10e-05)]_14_[+4(9.85e-05)]_\ 37 chr3:196264340-196264420 4.01e-05 49_[+3(5.77e-06)]_23 chr6:106594852-106594932 3.73e-03 65_[+1(9.01e-05)]_7 chr6:28947091-28947171 6.33e-02 80 chr5:114946690-114946770 4.03e-03 15_[+1(9.01e-05)]_4_[+4(2.83e-05)]_\ 45 chr4:84194161-84194241 2.67e-02 56_[+4(7.02e-05)]_16 chr9:127504140-127504220 1.93e-02 80 chr19:3900039-3900119 1.70e-04 11_[+5(3.97e-05)]_28_[+4(2.83e-05)]_\ 8_[+4(2.83e-05)]_9 chr3:32975750-32975830 2.57e-03 72_[+2(4.10e-05)] chr22:32869435-32869515 5.28e-05 13_[+5(3.97e-05)]_43_[+2(2.55e-05)]_\ 8 chr1:193087544-193087624 2.39e-01 80 chr16:19234743-19234823 1.34e-03 80 chr7:76876691-76876771 6.00e-05 29_[+3(4.92e-05)]_16_[+5(6.72e-05)]_\ 19 chr19:52690790-52690870 2.74e-02 47_[+1(9.01e-05)]_8_[+1(9.01e-05)]_\ 9 chr10:43851543-43851623 8.32e-05 41_[+1(9.01e-05)]_8_[+2(6.70e-05)]_\ 15 chr15:69595891-69595971 7.01e-02 80 chr7:148589374-148589454 1.35e-03 10_[+4(2.83e-05)]_11_[+4(2.83e-05)]_\ 10_[+1(9.01e-05)]_25 chrX:418139-418219 1.04e-01 80 chr6:105851419-105851499 3.47e-03 80 chr17:25960670-25960750 1.02e-01 80 chr9:94166331-94166411 1.27e-01 22_[+1(6.11e-05)]_50 chr1:211750248-211750328 2.61e-03 17_[+4(2.83e-05)]_23_[+1(9.01e-05)]_\ 24 chr3:47952378-47952458 1.59e-01 80 chr9:86607518-86607598 1.31e-02 80 chr5:90162276-90162356 7.82e-04 14_[+3(4.92e-05)]_28_[+1(1.96e-05)]_\ 22 chr8:125199517-125199597 2.21e-02 40_[+4(7.02e-05)]_32 chr6:100678126-100678206 2.47e-03 17_[+4(2.83e-05)]_38_[+4(7.02e-05)]_\ 9 chr1:196116807-196116887 4.96e-02 21_[+4(7.02e-05)]_6_[+4(7.02e-05)]_\ 37 chr3:25704906-25704986 3.29e-02 21_[+1(1.96e-05)]_51 chr17:46656348-46656428 2.19e-03 80 chr10:22318623-22318703 3.55e-02 80 chr6:74170891-74170971 1.33e-04 36_[+2(1.04e-05)]_36 chr7:152604334-152604414 4.63e-04 43_[+1(3.28e-05)]_9_[+4(2.83e-05)]_\ 12 chr5:172205365-172205445 6.03e-03 53_[+1(9.01e-05)]_19 chr1:234656899-234656979 1.58e-02 80 chr16:81232386-81232466 1.02e-02 13_[+5(6.72e-05)]_59 chr16:79636221-79636301 4.23e-03 9_[+2(5.65e-05)]_63 chr1:27993933-27994013 2.77e-04 9_[+5(6.72e-05)]_1_[+4(2.83e-05)]_\ 54 chr15:40399189-40399269 3.84e-02 80 chr3:24544273-24544353 7.32e-02 80 chr1:39859898-39859978 2.35e-02 80 chr10:95271135-95271215 7.98e-03 18_[+5(3.97e-05)]_54 chr19:54276365-54276445 3.11e-02 80 chr1:114219213-114219293 5.29e-03 66_[+4(9.85e-05)]_6 chrX:8776893-8776973 6.78e-04 20_[+5(3.97e-05)]_6_[+4(7.02e-05)]_\ 38 chr10:126576944-12657702 8.64e-01 80 chr11:111475312-11147539 8.34e-02 80 chr19:5689400-5689480 1.31e-02 80 chr8:130249901-130249981 6.97e-02 80 chr22:39514025-39514105 1.15e-04 34_[+4(7.02e-05)]_12_[+2(1.04e-05)]_\ 18 chr9:38334438-38334518 1.54e-03 80 chr3:193569130-193569210 1.25e-02 9_[+5(6.72e-05)]_43_[+5(6.72e-05)]_\ 12 chr20:31319282-31319362 2.20e-02 17_[+1(9.01e-05)]_55 chr1:202555624-202555704 2.83e-03 39_[+1(9.01e-05)]_33 chr2:63194220-63194300 1.03e-03 54_[+2(4.10e-05)]_18 chrX:154439626-154439706 2.47e-04 45_[+4(2.83e-05)]_4_[+5(6.72e-05)]_\ 15 chr15:89531749-89531829 2.55e-02 46_[+4(7.02e-05)]_26 chr2:188446309-188446389 9.63e-04 13_[+3(1.41e-05)]_59 chr13:25079467-25079547 1.72e-02 24_[+1(6.11e-05)]_48 chr5:39498589-39498669 4.56e-01 80 chr11:12790951-12791031 5.77e-03 30_[+4(7.02e-05)]_42 chr18:43802910-43802990 8.31e-02 80 chr7:65865522-65865602 1.16e-02 45_[+4(7.02e-05)]_9_[+4(7.02e-05)]_\ 10 chr5:71552648-71552728 3.18e-02 38_[+1(9.01e-05)]_34 chr1:109127083-109127163 2.18e-01 80 chr12:69742024-69742104 1.15e-03 24_[+5(6.72e-05)]_48 chr5:173287782-173287862 1.57e-02 80 chr6:147631652-147631732 1.03e-01 80 chr7:93717189-93717269 1.79e-02 80 chr12:69548570-69548650 2.58e-03 16_[+3(3.10e-05)]_56 chr21:46496452-46496532 1.64e-03 29_[+4(9.85e-05)]_43 chr16:81294813-81294893 1.98e-01 80 chr1:172371162-172371242 1.09e-02 80 chr9:75172684-75172764 7.61e-03 80 chr2:171253794-171253874 2.99e-01 80 chr4:38162664-38162744 1.18e-02 80 chr4:40553019-40553099 1.03e-01 80 chr11:62148339-62148419 2.06e-02 80 chr1:28454238-28454318 5.72e-02 30_[+5(6.72e-05)]_42 chr2:27321627-27321707 2.09e-04 30_[+3(3.10e-05)]_27_[+4(2.83e-05)]_\ 7 chr7:92441586-92441666 6.87e-03 54_[+5(3.97e-05)]_9_[+5(3.97e-05)]_\ 1 chr2:102954670-102954750 5.88e-02 80 chr20:39779551-39779631 1.48e-02 35_[+1(9.01e-05)]_37 chr3:47926841-47926921 1.30e-02 80 chr15:23712355-23712435 2.46e-01 80 chr3:156858080-156858160 2.32e-03 36_[+5(6.72e-05)]_[+5(6.72e-05)]_28 chr7:101459285-101459365 8.46e-03 24_[+3(6.15e-05)]_48 chr1:207406144-207406224 2.53e-01 80 chr1:93434157-93434237 2.10e-02 80 chr19:3700664-3700744 7.04e-02 80 chr12:54151016-54151096 3.40e-02 80 chr1:75878511-75878591 1.66e-01 80 chr5:55293744-55293824 4.59e-01 80 chr5:1191133-1191213 2.46e-01 80 chr7:30981354-30981434 2.37e-04 18_[+4(2.83e-05)]_19_[+1(9.01e-05)]_\ 27 chr3:128197715-128197795 2.05e-03 10_[+3(7.66e-05)]_53_[+4(9.85e-05)]_\ 1 chr12:48161108-48161188 7.61e-03 [+2(2.55e-05)]_72 chr16:67090229-67090309 3.56e-03 59_[+4(2.83e-05)]_13 chr8:95972237-95972317 3.30e-03 17_[+1(3.28e-05)]_55 chr4:73192586-73192666 1.33e-01 26_[+3(7.66e-05)]_46 chr1:29535111-29535191 4.12e-02 57_[+2(1.04e-05)]_15 chr10:15484267-15484347 4.04e-02 80 chr11:62195220-62195300 5.98e-03 45_[+4(2.83e-05)]_27 chr3:151694302-151694382 3.18e-01 80 chr2:170803219-170803299 2.10e-03 27_[+4(7.02e-05)]_19_[+5(3.97e-05)]_\ 18 chr5:118357836-118357916 2.74e-02 62_[+4(9.85e-05)]_10 chr15:75404737-75404817 6.50e-02 80 chr9:19085439-19085519 4.91e-04 24_[+5(6.72e-05)]_28_[+3(2.67e-05)]_\ 12 chr11:13950473-13950553 1.31e-01 80 chr2:26310999-26311079 9.42e-02 80 chr2:188362718-188362798 4.45e-04 72_[+3(3.70e-05)] chr7:13156863-13156943 5.70e-03 80 chr7:19787551-19787631 1.16e-04 15_[+3(4.92e-05)]_27_[+1(9.01e-05)]_\ 22 chr2:153492310-153492390 1.85e-04 20_[+5(3.97e-05)]_27_[+2(1.04e-05)]_\ 17 chr3:141173905-141173985 1.54e-01 80 chr1:28736351-28736431 5.61e-01 80 chr20:44437297-44437377 6.25e-02 2_[+5(3.97e-05)]_70 chr18:33162369-33162449 3.83e-02 7_[+5(3.97e-05)]_65 chr7:25608698-25608778 3.34e-02 80 chr2:197255055-197255135 4.11e-03 8_[+5(6.72e-05)]_64 chr1:27105785-27105865 2.87e-01 80 chr7:148526207-148526287 1.30e-01 80 chr1:39434911-39434991 1.37e-01 80 chr7:103164981-103165061 5.66e-03 63_[+1(9.01e-05)]_9 chr2:178076457-178076537 8.34e-02 80 chr1:40439402-40439482 5.76e-02 80 chr22:22005723-22005803 2.17e-03 31_[+5(6.72e-05)]_41 chr12:124662570-12466265 9.04e-05 54_[+5(3.97e-05)]_8_[+1(1.96e-05)]_\ 2 chr2:64750086-64750166 1.52e-01 80 chr3:151920871-151920951 8.60e-03 80 chr12:125477531-12547761 2.46e-03 21_[+3(3.10e-05)]_51 chr3:17484904-17484984 3.85e-02 80 chr1:114235704-114235784 3.41e-02 19_[+5(3.97e-05)]_53 chr17:71226423-71226503 3.73e-02 41_[+5(3.97e-05)]_31 chr6:13674852-13674932 2.05e-02 80 chrX:109399602-109399682 3.09e-02 80 chr3:45729703-45729783 1.37e-02 80 chr17:57243393-57243473 3.97e-02 45_[+2(4.10e-05)]_27 chr6:33352466-33352546 1.21e-02 80 chr7:22765426-22765506 1.19e-02 25_[+1(1.96e-05)]_47 chr2:66660560-66660640 1.88e-03 80 chr1:112199220-112199300 5.38e-03 52_[+4(2.83e-05)]_20 chr2:70528451-70528531 5.94e-04 31_[+3(3.70e-05)]_41 chr10:89307595-89307675 4.81e-05 40_[+5(6.72e-05)]_32 chr15:55699798-55699878 1.35e-02 80 chr1:161700283-161700363 2.90e-05 23_[+3(3.70e-05)]_28_[+1(9.01e-05)]_\ 13 chr3:195908871-195908951 6.97e-02 80 chr4:113090461-113090541 4.55e-01 80 chr14:68161633-68161713 2.99e-05 14_[+2(6.70e-05)]_58 chr11:74352572-74352652 7.30e-01 80 chr2:191217763-191217843 8.39e-04 37_[+4(7.02e-05)]_35 chr21:34677037-34677117 1.22e-02 26_[+4(2.83e-05)]_46 chr12:110869888-11086996 1.55e-02 10_[+1(1.96e-05)]_62 chr1:150738216-150738296 2.43e-01 80 chr15:65326233-65326313 2.87e-02 40_[+4(7.02e-05)]_32 chr21:35338741-35338821 7.96e-01 80 chr13:46863272-46863352 2.63e-02 80 chr8:106337712-106337792 8.00e-02 80 chr4:123402249-123402329 2.14e-01 80 chr1:84899541-84899621 1.56e-02 15_[+1(1.96e-05)]_57 chr4:175240441-175240521 7.52e-03 80 chr21:40012055-40012135 1.08e-01 80 chr7:156454498-156454578 3.62e-03 27_[+2(5.65e-05)]_45 chr5:82373906-82373986 2.27e-03 39_[+4(7.02e-05)]_33 chr4:151493920-151494000 4.12e-02 80 chr2:169894969-169895049 2.62e-01 80 chr8:41461873-41461953 2.34e-02 18_[+5(6.72e-05)]_54 chr2:172455382-172455462 2.96e-02 80 chr3:127889945-127890025 3.63e-03 18_[+3(3.70e-05)]_54 chr1:12529591-12529671 2.49e-02 80 chr12:76088786-76088866 3.02e-01 80 chr6:159139622-159139702 6.74e-03 54_[+3(5.77e-06)]_18 chr3:58885807-58885887 3.05e-02 80 chr9:75768886-75768966 1.03e-01 80 chr6:37145580-37145660 1.42e-02 30_[+5(9.40e-05)]_42 chr1:168188025-168188105 1.29e-01 80 chr2:169659939-169660019 3.47e-03 80 chr21:34025730-34025810 9.59e-05 18_[+4(2.83e-05)]_54 chr8:38226131-38226211 1.24e-01 80 chr6:30312102-30312182 1.90e-02 80 chr15:69336022-69336102 2.59e-02 80 chr3:172248639-172248719 2.03e-01 80 chr13:49875407-49875487 1.80e-01 80 chr4:68563105-68563185 2.77e-03 15_[+4(9.85e-05)]_6_[+4(7.02e-05)]_\ 43 chr9:130830258-130830338 4.12e-02 80 chr2:173942667-173942747 7.96e-01 80 chr6:88410725-88410805 2.11e-02 80 chr12:24565042-24565122 2.85e-02 18_[+1(6.11e-05)]_27_[+1(6.11e-05)]_\ 19 chr13:91520741-91520821 1.83e-02 80 chr4:48901366-48901446 6.21e-02 80 chr12:47055251-47055331 2.23e-01 80 chr6:116966904-116966984 5.16e-01 80 chr14:34035507-34035587 7.76e-01 80 chr11:113484465-11348454 4.30e-02 80 chr19:2724420-2724500 8.01e-03 80 chr7:154474506-154474586 7.95e-01 80 chr22:27041304-27041384 6.58e-02 80 chr1:29506384-29506464 4.13e-02 80 chr19:12034579-12034659 3.46e-03 53_[+3(9.93e-06)]_19 chr6:14317568-14317648 3.53e-03 80 chr12:8223249-8223329 9.29e-02 38_[+1(6.11e-05)]_34 chr18:57213493-57213573 8.44e-02 80 chr7:137634640-137634720 3.39e-02 80 chr1:70685853-70685933 3.49e-01 80 chr10:22678840-22678920 1.14e-03 36_[+1(9.01e-05)]_36 chr8:17016235-17016315 2.23e-01 80 chr8:69127584-69127664 1.37e-02 66_[+4(7.02e-05)]_6 chr12:42539616-42539696 7.90e-04 2_[+3(3.10e-05)]_42_[+5(6.72e-05)]_\ 20 chr6:35361207-35361287 1.70e-01 80 chr22:30841359-30841439 1.84e-02 80 chr2:178052422-178052502 3.75e-02 80 chr2:12428194-12428274 5.74e-03 28_[+5(3.97e-05)]_44 chr7:130667139-130667219 3.79e-03 68_[+4(2.83e-05)]_4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************