******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/CTBP1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:49316012-49316092 1.0000 80 chr10:121186909-12118698 1.0000 80 chr19:18491267-18491347 1.0000 80 chr15:89560872-89560952 1.0000 80 chr19:46406344-46406424 1.0000 80 chr1:155829325-155829405 1.0000 80 chr16:87495233-87495313 1.0000 80 chr3:49507710-49507790 1.0000 80 chr15:82339515-82339595 1.0000 80 chr15:74683399-74683479 1.0000 80 chr19:49924434-49924514 1.0000 80 chr19:35636117-35636197 1.0000 80 chr1:208359369-208359449 1.0000 80 chr3:159943456-159943536 1.0000 80 chr17:67323309-67323389 1.0000 80 chr1:109373259-109373339 1.0000 80 chr4:40533433-40533513 1.0000 80 chr1:224401400-224401480 1.0000 80 chr15:78857509-78857589 1.0000 80 chr15:81194768-81194848 1.0000 80 chr16:71460597-71460677 1.0000 80 chr8:27219390-27219470 1.0000 80 chr11:56912155-56912235 1.0000 80 chr17:27966422-27966502 1.0000 80 chr6:33873086-33873166 1.0000 80 chr5:138775035-138775115 1.0000 80 chr8:143808825-143808905 1.0000 80 chr17:73070760-73070840 1.0000 80 chr5:68303715-68303795 1.0000 80 chr2:240162257-240162337 1.0000 80 chr1:167034020-167034100 1.0000 80 chr7:30324536-30324616 1.0000 80 chr10:79342730-79342810 1.0000 80 chr7:116570680-116570760 1.0000 80 chr16:68098883-68098963 1.0000 80 chr12:94483862-94483942 1.0000 80 chr17:47329644-47329724 1.0000 80 chr1:19986427-19986507 1.0000 80 chr21:43430793-43430873 1.0000 80 chr15:67471221-67471301 1.0000 80 chr19:41129877-41129957 1.0000 80 chr11:20057381-20057461 1.0000 80 chr19:39997805-39997885 1.0000 80 chr9:96974544-96974624 1.0000 80 chr2:9346500-9346580 1.0000 80 chr19:9945469-9945549 1.0000 80 chr22:19709875-19709955 1.0000 80 chr12:120426761-12042684 1.0000 80 chr1:235147756-235147836 1.0000 80 chr13:114919167-11491924 1.0000 80 chr7:101707146-101707226 1.0000 80 chr17:72414967-72415047 1.0000 80 chr17:71251895-71251975 1.0000 80 chr12:96883269-96883349 1.0000 80 chr6:159053387-159053467 1.0000 80 chr8:126010567-126010647 1.0000 80 chr22:40361850-40361930 1.0000 80 chr12:32259635-32259715 1.0000 80 chr6:136871657-136871737 1.0000 80 chr1:59465584-59465664 1.0000 80 chr11:78159789-78159869 1.0000 80 chr10:72409459-72409539 1.0000 80 chr2:113450231-113450311 1.0000 80 chr15:82386252-82386332 1.0000 80 chr11:747332-747412 1.0000 80 chr3:196377887-196377967 1.0000 80 chr10:72972331-72972411 1.0000 80 chr19:35932478-35932558 1.0000 80 chr5:173164289-173164369 1.0000 80 chr16:27257327-27257407 1.0000 80 chr19:13283378-13283458 1.0000 80 chr22:22921709-22921789 1.0000 80 chr2:111880077-111880157 1.0000 80 chr2:103281020-103281100 1.0000 80 chr1:25870168-25870248 1.0000 80 chr6:31514593-31514673 1.0000 80 chr6:14868097-14868177 1.0000 80 chr22:42659137-42659217 1.0000 80 chr11:44564040-44564120 1.0000 80 chr22:22652352-22652432 1.0000 80 chr16:1728116-1728196 1.0000 80 chr10:74036369-74036449 1.0000 80 chr15:66194874-66194954 1.0000 80 chr2:131113601-131113681 1.0000 80 chr19:48610813-48610893 1.0000 80 chr19:59021259-59021339 1.0000 80 chr12:49794219-49794299 1.0000 80 chr4:2264181-2264261 1.0000 80 chr1:23952669-23952749 1.0000 80 chr8:143808621-143808701 1.0000 80 chr2:97018883-97018963 1.0000 80 chr9:126030994-126031074 1.0000 80 chr10:65281617-65281697 1.0000 80 chr6:7107114-7107194 1.0000 80 chr1:150533940-150534020 1.0000 80 chr16:87811497-87811577 1.0000 80 chr15:91576426-91576506 1.0000 80 chr14:103588497-10358857 1.0000 80 chr6:25910649-25910729 1.0000 80 chr18:43988728-43988808 1.0000 80 chr11:118799021-11879910 1.0000 80 chr15:31618772-31618852 1.0000 80 chr17:79917661-79917741 1.0000 80 chr12:117443379-11744345 1.0000 80 chr16:57725189-57725269 1.0000 80 chr1:110331976-110332056 1.0000 80 chr4:87856227-87856307 1.0000 80 chr16:27246815-27246895 1.0000 80 chr5:76788232-76788312 1.0000 80 chr1:165812103-165812183 1.0000 80 chr10:61895007-61895087 1.0000 80 chr19:45946222-45946302 1.0000 80 chr6:18155669-18155749 1.0000 80 chr1:182118689-182118769 1.0000 80 chr2:71192169-71192249 1.0000 80 chr1:205218284-205218364 1.0000 80 chr20:49347859-49347939 1.0000 80 chr17:80056584-80056664 1.0000 80 chr1:28270016-28270096 1.0000 80 chr19:49925780-49925860 1.0000 80 chr11:12141803-12141883 1.0000 80 chr19:40724229-40724309 1.0000 80 chr16:3054033-3054113 1.0000 80 chr8:41324636-41324716 1.0000 80 chr18:6729838-6729918 1.0000 80 chr13:44717478-44717558 1.0000 80 chr11:47359011-47359091 1.0000 80 chr16:84173170-84173250 1.0000 80 chr15:90319809-90319889 1.0000 80 chr22:19711664-19711744 1.0000 80 chr10:75408920-75409000 1.0000 80 chr6:30847598-30847678 1.0000 80 chr1:47048760-47048840 1.0000 80 chr7:1067885-1067965 1.0000 80 chr11:63381835-63381915 1.0000 80 chr19:51510891-51510971 1.0000 80 chr11:66607940-66608020 1.0000 80 chr15:90607173-90607253 1.0000 80 chr14:19614642-19614722 1.0000 80 chr10:99387577-99387657 1.0000 80 chr4:95076716-95076796 1.0000 80 chr10:65343293-65343373 1.0000 80 chr20:48610104-48610184 1.0000 80 chr2:54801655-54801735 1.0000 80 chr3:196254752-196254832 1.0000 80 chr9:138863946-138864026 1.0000 80 chr11:74952848-74952928 1.0000 80 chr2:197221260-197221340 1.0000 80 chr16:90098810-90098890 1.0000 80 chr1:32166799-32166879 1.0000 80 chr1:65720166-65720246 1.0000 80 chr19:680361-680441 1.0000 80 chr22:36851189-36851269 1.0000 80 chr5:36740028-36740108 1.0000 80 chr8:22880346-22880426 1.0000 80 chr3:100008373-100008453 1.0000 80 chr3:193512126-193512206 1.0000 80 chr17:77890030-77890110 1.0000 80 chr5:134471600-134471680 1.0000 80 chr20:61196105-61196185 1.0000 80 chr3:148709239-148709319 1.0000 80 chr4:1901067-1901147 1.0000 80 chr17:18086944-18087024 1.0000 80 chr5:141049288-141049368 1.0000 80 chr18:33039017-33039097 1.0000 80 chr12:120524922-12052500 1.0000 80 chr1:24742120-24742200 1.0000 80 chr3:9993994-9994074 1.0000 80 chr17:28671956-28672036 1.0000 80 chr1:234614675-234614755 1.0000 80 chr5:133523405-133523485 1.0000 80 chr2:28731386-28731466 1.0000 80 chr10:72142399-72142479 1.0000 80 chr22:23112872-23112952 1.0000 80 chr17:31203662-31203742 1.0000 80 chr1:87241268-87241348 1.0000 80 chr1:212101784-212101864 1.0000 80 chr16:81485821-81485901 1.0000 80 chrX:48726454-48726534 1.0000 80 chr15:40559149-40559229 1.0000 80 chr21:40752274-40752354 1.0000 80 chr17:79980966-79981046 1.0000 80 chr22:18484110-18484190 1.0000 80 chr6:13328647-13328727 1.0000 80 chr6:106808435-106808515 1.0000 80 chr1:165797074-165797154 1.0000 80 chr16:88182860-88182940 1.0000 80 chr8:26435224-26435304 1.0000 80 chr7:142661667-142661747 1.0000 80 chr12:42538578-42538658 1.0000 80 chr9:77703284-77703364 1.0000 80 chr9:129486240-129486320 1.0000 80 chr15:51296451-51296531 1.0000 80 chr6:28655581-28655661 1.0000 80 chr5:139487287-139487367 1.0000 80 chr1:228352376-228352456 1.0000 80 chr17:74449338-74449418 1.0000 80 chr20:60718381-60718461 1.0000 80 chr19:36294587-36294667 1.0000 80 chr10:23727977-23728057 1.0000 80 chr6:134906762-134906842 1.0000 80 chr19:860662-860742 1.0000 80 chr1:27286877-27286957 1.0000 80 chr22:21161879-21161959 1.0000 80 chr5:149522593-149522673 1.0000 80 chr4:2757822-2757902 1.0000 80 chr10:50374161-50374241 1.0000 80 chr19:1354761-1354841 1.0000 80 chr6:33480131-33480211 1.0000 80 chr4:160024007-160024087 1.0000 80 chr1:184775577-184775657 1.0000 80 chr16:81515093-81515173 1.0000 80 chr13:107188067-10718814 1.0000 80 chr7:6629832-6629912 1.0000 80 chr1:59509554-59509634 1.0000 80 chr19:480448-480528 1.0000 80 chr22:20255926-20256006 1.0000 80 chr2:12633403-12633483 1.0000 80 chr1:8086401-8086481 1.0000 80 chr19:14247465-14247545 1.0000 80 chr22:38003240-38003320 1.0000 80 chr3:186285062-186285142 1.0000 80 chr8:48173469-48173549 1.0000 80 chr16:2033855-2033935 1.0000 80 chr11:36137161-36137241 1.0000 80 chr7:38375319-38375399 1.0000 80 chr17:46578494-46578574 1.0000 80 chr19:52299565-52299645 1.0000 80 chr4:129375609-129375689 1.0000 80 chr19:962374-962454 1.0000 80 chr6:15555617-15555697 1.0000 80 chr8:103820856-103820936 1.0000 80 chr15:74726132-74726212 1.0000 80 chr6:28047856-28047936 1.0000 80 chr7:75536526-75536606 1.0000 80 chr1:33221507-33221587 1.0000 80 chr22:20004479-20004559 1.0000 80 chr7:30186057-30186137 1.0000 80 chr3:45133889-45133969 1.0000 80 chr5:75471765-75471845 1.0000 80 chr19:39522491-39522571 1.0000 80 chrX:102488288-102488368 1.0000 80 chr10:75532656-75532736 1.0000 80 chr7:140188213-140188293 1.0000 80 chr9:131451313-131451393 1.0000 80 chr8:96241215-96241295 1.0000 80 chr19:14202187-14202267 1.0000 80 chr15:63688020-63688100 1.0000 80 chr3:37011562-37011642 1.0000 80 chr1:33827346-33827426 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_CTBP1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/CTBP1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.191 C 0.308 G 0.31 T 0.191 Background letter frequencies (from file dataset with add-one prior applied): A 0.191 C 0.308 G 0.31 T 0.191 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TYATCWSH MEME-1 width = 8 sites = 56 llr = 459 E-value = 2.0e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::5:2 pos.-specific C :4::a:44 probability G ::::::31 matrix T a6:a:523 bits 2.4 * ** 2.2 * ** 1.9 * ** 1.7 * *** Relative 1.4 * **** Entropy 1.2 ****** (11.8 bits) 1.0 ****** 0.7 ****** 0.5 ****** 0.2 ******** 0.0 -------- Multilevel TTATCTCC consensus C AGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:100008373-100008453 31 4.61e-06 CAAGGGTTTG TTATCTCT GGGCTCAGAT chr19:36294587-36294667 18 9.21e-06 ttccccaagg ttatcact gctgcattgt chr9:129486240-129486320 30 9.21e-06 CTTCCTAGCA TTATCACT CAGCGACATC chr19:41129877-41129957 31 9.21e-06 CTGTGGGCTC TTATCACT GTACCTGCGA chr1:208359369-208359449 40 9.21e-06 TCTGAGGGAG TTATCACT AGGCACAGAT chr3:196254752-196254832 46 1.38e-05 CTCTTATCCT TTATCTGT CTTTGTCTCA chr7:101707146-101707226 35 1.38e-05 TCAGGCAGCC TTATCTGT CATCCTAGAA chr2:240162257-240162337 11 1.38e-05 AGGTTCCCCC TTATCTGT CTCCGCTTGA chr17:28671956-28672036 54 2.13e-05 TCCTTACCCA TTATCAGT GGAAACCTGG chr11:12141803-12141883 7 2.13e-05 ATGAGT TTATCTTT GATTAGCTGT chr1:47048760-47048840 4 3.16e-05 ATC TTATCTCC CTACCACACA chr6:30847598-30847678 58 3.16e-05 ccagtgacca ttatctcc ctcttactga chr1:205218284-205218364 29 3.16e-05 CCTCATGGTG TTATCTCC AGGCTCCAGA chr19:35932478-35932558 54 3.16e-05 TGAAATGGAC TTATCTCC ATTCTGAAGT chr7:75536526-75536606 3 4.37e-05 GG TTATCTCA ACCCAGGAAA chr11:36137161-36137241 17 4.37e-05 CAGCTATTCC TTATCACC CCACGGTCAC chr7:142661667-142661747 31 4.37e-05 GGACTTCTTC TTATCACC CATATCCTAC chr1:87241268-87241348 33 4.37e-05 ATCAGGGCCT TTATCACC TCGtgcagtc chr8:22880346-22880426 56 4.37e-05 TTAGCCACCT TTATCTCA TTGTCCATGA chr6:25910649-25910729 34 4.37e-05 ATCATTGTTC TTATCACC CGTGGCAACT chr6:33873086-33873166 48 4.37e-05 ATCCTCCTCC TTATCTCA GGGCCACACC chr6:15555617-15555697 51 5.57e-05 agcaggactg ttatcaca agatacaggt chr17:46578494-46578574 12 5.57e-05 CTGGTGCAGT TTATCTGC TTCTTGTCCA chr6:33480131-33480211 41 7.25e-05 TGTGGCAAAC TTATCAGC AGAAGTCATC chr13:44717478-44717558 60 7.25e-05 AGCCATCATC TTATCTGA CCACACAGAC chr15:67471221-67471301 13 7.25e-05 GCCTTCATCC TTATCTTC CTTTGCTCCA chr2:197221260-197221340 36 8.46e-05 gccatctcaa ttatcaga tcagctgtca chr19:13283378-13283458 14 8.46e-05 ATGGAGGTCC TTATCATC CTCCAATCTC chr11:56912155-56912235 50 8.46e-05 CTCTGGCCCC TTATCAGA TGTCCCTCTC chr15:78857509-78857589 6 8.46e-05 AGCTG TTATCTTA AGGTGTGCAG chr10:99387577-99387657 26 9.48e-05 ACTTGCCATG TCATCTCT GTCCTATCAA chr2:97018883-97018963 66 9.48e-05 ACTGTGCCTC TCATCTCT CGTCCCA chr15:81194768-81194848 52 9.48e-05 ACACTGTCCC TCATCTCT CGGATAGCAG chr19:18491267-18491347 30 9.48e-05 CCTGCTGAGC TCATCTCT GGCCACCTGC chr22:21161879-21161959 1 1.02e-04 . TCATCACT TGGACACTCT chr16:68098883-68098963 11 1.22e-04 GTTCTTGGGA TCATCTTT CCTCCAGCTT chr4:129375609-129375689 51 1.38e-04 CGCAGAGGTC TCATCATT GCGTCACCTG chr13:114919167-11491924 25 1.38e-04 atcatctcca tcatctcc atagtctcca chr8:27219390-27219470 50 1.38e-04 ATCCTCCTAG TCATCATT TCAGTCAGCC chr11:44564040-44564120 44 1.65e-04 acctccatcg tcatcacc atagcaacca chr1:212101784-212101864 40 1.92e-04 AGATCTGTTT TCATCACA CAGAGGATGA chr10:61895007-61895087 48 1.92e-04 ttccacgaga tcatctgc tactcacctc chr19:59021259-59021339 66 1.92e-04 AGCATCTTGC TCATCTGC AGTACCC chr19:962374-962454 22 2.27e-04 CCACCCTTCC TTATCTGG GCCCCACGAC chr5:36740028-36740108 42 2.27e-04 ggagaacagt tcatcagc atcttcctga chr11:20057381-20057461 61 2.27e-04 TCTGTCTGTG TCATCAGC CTGAGCTGGA chr10:121186909-12118698 61 2.27e-04 atcaccgcca tcatcagc atcaccacca chr1:33827346-33827426 45 2.58e-04 AGAGGAAGTC TCATCAGA ACCTGGTGAC chr5:133523405-133523485 34 2.58e-04 TCTAGGAATG TTATCAGG TCATGGTCAG chr11:66607940-66608020 42 2.58e-04 AGCTCTCATT TCATCAGA AGAAAATCTC chr18:43988728-43988808 6 2.58e-04 TGGTC TTATCTTG GAACAGATGG chr2:54801655-54801735 7 2.68e-04 TGATTT TTATCATG TGGTTTCCTT chr17:47329644-47329724 6 3.04e-04 CTGAC TCATCTGG GGTACCAAGG chr2:103281020-103281100 53 3.26e-04 GATGACTGAC TCATCTTG GGTACCTGTC chr1:228352376-228352456 10 3.37e-04 GATTGTGTC TCATCATG TCACACTGAT chr7:140188213-140188293 53 3.41e-04 catttgcctg ttatctac ctatgacctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:100008373-100008453 4.6e-06 30_[+1]_42 chr19:36294587-36294667 9.2e-06 17_[+1]_55 chr9:129486240-129486320 9.2e-06 29_[+1]_43 chr19:41129877-41129957 9.2e-06 30_[+1]_42 chr1:208359369-208359449 9.2e-06 39_[+1]_33 chr3:196254752-196254832 1.4e-05 45_[+1]_27 chr7:101707146-101707226 1.4e-05 34_[+1]_38 chr2:240162257-240162337 1.4e-05 10_[+1]_62 chr17:28671956-28672036 2.1e-05 53_[+1]_19 chr11:12141803-12141883 2.1e-05 6_[+1]_66 chr1:47048760-47048840 3.2e-05 3_[+1]_69 chr6:30847598-30847678 3.2e-05 57_[+1]_15 chr1:205218284-205218364 3.2e-05 28_[+1]_44 chr19:35932478-35932558 3.2e-05 53_[+1]_19 chr7:75536526-75536606 4.4e-05 2_[+1]_70 chr11:36137161-36137241 4.4e-05 16_[+1]_56 chr7:142661667-142661747 4.4e-05 30_[+1]_42 chr1:87241268-87241348 4.4e-05 32_[+1]_40 chr8:22880346-22880426 4.4e-05 55_[+1]_17 chr6:25910649-25910729 4.4e-05 33_[+1]_39 chr6:33873086-33873166 4.4e-05 47_[+1]_25 chr6:15555617-15555697 5.6e-05 50_[+1]_22 chr17:46578494-46578574 5.6e-05 11_[+1]_61 chr6:33480131-33480211 7.2e-05 40_[+1]_32 chr13:44717478-44717558 7.2e-05 59_[+1]_13 chr15:67471221-67471301 7.2e-05 12_[+1]_60 chr2:197221260-197221340 8.5e-05 35_[+1]_37 chr19:13283378-13283458 8.5e-05 13_[+1]_59 chr11:56912155-56912235 8.5e-05 49_[+1]_23 chr15:78857509-78857589 8.5e-05 5_[+1]_67 chr10:99387577-99387657 9.5e-05 25_[+1]_47 chr2:97018883-97018963 9.5e-05 65_[+1]_7 chr15:81194768-81194848 9.5e-05 51_[+1]_21 chr19:18491267-18491347 9.5e-05 29_[+1]_43 chr22:21161879-21161959 0.0001 [+1]_72 chr16:68098883-68098963 0.00012 10_[+1]_62 chr4:129375609-129375689 0.00014 50_[+1]_22 chr13:114919167-11491924 0.00014 24_[+1]_48 chr8:27219390-27219470 0.00014 49_[+1]_23 chr11:44564040-44564120 0.00017 43_[+1]_29 chr1:212101784-212101864 0.00019 39_[+1]_33 chr10:61895007-61895087 0.00019 47_[+1]_25 chr19:59021259-59021339 0.00019 65_[+1]_7 chr19:962374-962454 0.00023 21_[+1]_51 chr5:36740028-36740108 0.00023 41_[+1]_31 chr11:20057381-20057461 0.00023 60_[+1]_12 chr10:121186909-12118698 0.00023 60_[+1]_12 chr1:33827346-33827426 0.00026 44_[+1]_28 chr5:133523405-133523485 0.00026 33_[+1]_39 chr11:66607940-66608020 0.00026 41_[+1]_31 chr18:43988728-43988808 0.00026 5_[+1]_67 chr2:54801655-54801735 0.00027 6_[+1]_66 chr17:47329644-47329724 0.0003 5_[+1]_67 chr2:103281020-103281100 0.00033 52_[+1]_20 chr1:228352376-228352456 0.00034 9_[+1]_63 chr7:140188213-140188293 0.00034 52_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYATCWSH width=8 seqs=56 chr3:100008373-100008453 ( 31) TTATCTCT 1 chr19:36294587-36294667 ( 18) TTATCACT 1 chr9:129486240-129486320 ( 30) TTATCACT 1 chr19:41129877-41129957 ( 31) TTATCACT 1 chr1:208359369-208359449 ( 40) TTATCACT 1 chr3:196254752-196254832 ( 46) TTATCTGT 1 chr7:101707146-101707226 ( 35) TTATCTGT 1 chr2:240162257-240162337 ( 11) TTATCTGT 1 chr17:28671956-28672036 ( 54) TTATCAGT 1 chr11:12141803-12141883 ( 7) TTATCTTT 1 chr1:47048760-47048840 ( 4) TTATCTCC 1 chr6:30847598-30847678 ( 58) TTATCTCC 1 chr1:205218284-205218364 ( 29) TTATCTCC 1 chr19:35932478-35932558 ( 54) TTATCTCC 1 chr7:75536526-75536606 ( 3) TTATCTCA 1 chr11:36137161-36137241 ( 17) TTATCACC 1 chr7:142661667-142661747 ( 31) TTATCACC 1 chr1:87241268-87241348 ( 33) TTATCACC 1 chr8:22880346-22880426 ( 56) TTATCTCA 1 chr6:25910649-25910729 ( 34) TTATCACC 1 chr6:33873086-33873166 ( 48) TTATCTCA 1 chr6:15555617-15555697 ( 51) TTATCACA 1 chr17:46578494-46578574 ( 12) TTATCTGC 1 chr6:33480131-33480211 ( 41) TTATCAGC 1 chr13:44717478-44717558 ( 60) TTATCTGA 1 chr15:67471221-67471301 ( 13) TTATCTTC 1 chr2:197221260-197221340 ( 36) TTATCAGA 1 chr19:13283378-13283458 ( 14) TTATCATC 1 chr11:56912155-56912235 ( 50) TTATCAGA 1 chr15:78857509-78857589 ( 6) TTATCTTA 1 chr10:99387577-99387657 ( 26) TCATCTCT 1 chr2:97018883-97018963 ( 66) TCATCTCT 1 chr15:81194768-81194848 ( 52) TCATCTCT 1 chr19:18491267-18491347 ( 30) TCATCTCT 1 chr22:21161879-21161959 ( 1) TCATCACT 1 chr16:68098883-68098963 ( 11) TCATCTTT 1 chr4:129375609-129375689 ( 51) TCATCATT 1 chr13:114919167-11491924 ( 25) TCATCTCC 1 chr8:27219390-27219470 ( 50) TCATCATT 1 chr11:44564040-44564120 ( 44) TCATCACC 1 chr1:212101784-212101864 ( 40) TCATCACA 1 chr10:61895007-61895087 ( 48) TCATCTGC 1 chr19:59021259-59021339 ( 66) TCATCTGC 1 chr19:962374-962454 ( 22) TTATCTGG 1 chr5:36740028-36740108 ( 42) TCATCAGC 1 chr11:20057381-20057461 ( 61) TCATCAGC 1 chr10:121186909-12118698 ( 61) TCATCAGC 1 chr1:33827346-33827426 ( 45) TCATCAGA 1 chr5:133523405-133523485 ( 34) TTATCAGG 1 chr11:66607940-66608020 ( 42) TCATCAGA 1 chr18:43988728-43988808 ( 6) TTATCTTG 1 chr2:54801655-54801735 ( 7) TTATCATG 1 chr17:47329644-47329724 ( 6) TCATCTGG 1 chr2:103281020-103281100 ( 53) TCATCTTG 1 chr1:228352376-228352456 ( 10) TCATCATG 1 chr7:140188213-140188293 ( 53) TTATCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 2.0e-020 -1245 -1245 -1245 239 -1245 28 -1245 171 239 -1245 -1245 -1245 -1245 -1245 -1245 239 -1245 170 -1245 -1245 134 -1245 -1245 144 -342 53 13 4 4 21 -131 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 2.0e-020 0.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.625000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.482143 0.000000 0.000000 0.517857 0.017857 0.446429 0.339286 0.196429 0.196429 0.357143 0.125000 0.321429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYATCWSH MEME-1 regular expression -------------------------------------------------------------------------------- T[TC]ATC[TA][CG][CT] -------------------------------------------------------------------------------- Time 4.85 secs. ******************************************************************************** ******************************************************************************** MOTIF DGAKGMWG MEME-2 width = 8 sites = 72 llr = 522 E-value = 3.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:a::54: pos.-specific C :::::3:: probability G 3a:6a21a matrix T 3::4::4: bits 2.4 * 2.2 * 1.9 * 1.7 ** * * Relative 1.4 ** * * Entropy 1.2 ** * * (10.5 bits) 1.0 **** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGATG consensus T T CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:33827346-33827426 35 3.97e-05 AGCCAAAACA AGAGGAAG TCTCATCAGA chr16:81515093-81515173 18 3.97e-05 TAATTATGAA AGAGGAAG TCCAGGGAGC chr6:28655581-28655661 38 3.97e-05 agttgagata agaggaag gcatctgtct chr15:51296451-51296531 65 3.97e-05 ACTCTGACAG AGAGGAAG TGCCTTCT chr1:212101784-212101864 49 3.97e-05 TTCATCACAC AGAGGATG ATAAGTGAAT chr11:12141803-12141883 45 3.97e-05 CTGAACCTTA AGAGGATG GGGCATAGGA chr19:45946222-45946302 69 3.97e-05 GATGAAGATA AGAGGAAG TGAC chr10:61895007-61895087 14 3.97e-05 ccaggaactg agaggatg gaggttggtg chr4:2264181-2264261 56 3.97e-05 CGCGTTGCCG AGAGGAAG CGCAGCGCGC chr3:196377887-196377967 36 3.97e-05 ATGTGGGAGG AGAGGAAG CAGTCCTGTG chr17:73070760-73070840 39 3.97e-05 TCGTGGAGAA AGAGGAAG CAGCCGCCCT chr1:109373259-109373339 47 3.97e-05 GAGATGTGAT AGAGGATG TGACTCACGC chrX:102488288-102488368 28 7.95e-05 CTGAGCAGGG TGAGGAAG GCATTCATGC chr1:23952669-23952749 69 7.95e-05 atggggatga tgatgatg ggga chr12:49794219-49794299 27 7.95e-05 acagtgctga tgaggatg caccagtaga chr16:27257327-27257407 14 7.95e-05 GCACGTAGCC TGATGATG TACAGGAGTC chr11:78159789-78159869 9 7.95e-05 GCCAGTGA TGAGGAAG ATGAGGCAAT chr7:30186057-30186137 64 2.08e-04 TTTGCTGCAG GGATGATG GTTATTTCT chr19:480448-480528 59 2.08e-04 TGATggagaa ggatgatg gggaaggatg chr1:184775577-184775657 18 2.08e-04 GGCTGGGAAG AGAGGCAG GGTCAGGGAT chr22:23112872-23112952 50 2.08e-04 GGCATCAGGG AGATGCTG ACATGCAGGG chr4:1901067-1901147 20 2.08e-04 gcgttgcagg agatgcag cagcatccat chr3:148709239-148709319 11 2.08e-04 CGCGCAGCTG GGAGGATG CGGACGGCAG chr17:77890030-77890110 69 2.08e-04 GGGCTGGTCC AGAGGCTG GGCT chr13:44717478-44717558 10 2.08e-04 TGGCTCCCT GGAGGAAG AATGATTGAA chr8:41324636-41324716 34 2.08e-04 AGAGTGAATA GGATGATG TAAGAGCTCA chr6:18155669-18155749 24 2.08e-04 gcggcCGAGA AGAGGCTG GGGCTCGCGG chr14:103588497-10358857 51 2.08e-04 CCCAGAGACA GGATGATG GATGGCAATC chr19:59021259-59021339 5 2.08e-04 GTAC AGAGGCAG GACCGTGTAA chr2:103281020-103281100 39 2.08e-04 CTGGTGACTG GGAGGATG ACTGACTCAT chr19:9945469-9945549 26 2.08e-04 TGGCAACAGC AGAGGCAG CACCGCCCCG chr7:30324536-30324616 7 2.08e-04 GGAGCC GGAGGATG GCGGCGGTAG chr1:167034020-167034100 55 2.08e-04 CATAAGCACG GGATGATG GGCGGACCCA chr10:99387577-99387657 6 2.72e-04 AGACG TGATGCTG GTACTTGCCA chr16:27246815-27246895 19 2.72e-04 GAGGGCGTTG TGAGGCAG GAGGGCCAGG chr6:31514593-31514673 59 2.72e-04 GGTCTAGGGA TGAGGCAG GGGCGGAGAC chr22:22921709-22921789 60 2.72e-04 TCAAGGGATT TGATGCTG CAGATGCTTC chr2:113450231-113450311 20 2.72e-04 GAAACCTAGC TGATGCTG ACTCATGCTG chr17:71251895-71251975 5 2.72e-04 TAGG TGATGCTG GCCAGCATTT chr12:120426761-12042684 8 2.72e-04 CGCGCGG TGAGGCAG CCAGGACCGT chr8:27219390-27219470 7 2.72e-04 CCCCGA TGATGCAG ACAGCCTCCC chr15:81194768-81194848 9 2.72e-04 GAGAATTC TGAGGCAG GATGGGGTGC chr15:89560872-89560952 52 2.72e-04 CTCTGGTATT TGATGCTG GAGAGAAAAA chr15:40559149-40559229 45 3.37e-04 actgatagag agagggtg agtcaccccc chr5:36740028-36740108 28 3.37e-04 tctcctgtga agatggag aacagttcat chr10:65343293-65343373 28 3.37e-04 GGAAGGAGCC AGATGGAG TCGACTGTGT chr1:19986427-19986507 18 3.37e-04 GGGATCCCAG AGAGGGAG TAGCCTGGCT chr15:82339515-82339595 59 3.37e-04 GGGTGGCGGC AGAGGGAG GTTGCGACGG chr1:33221507-33221587 65 4.01e-04 TGACCATTTG TGATGGAG GAGAGAGA chr22:38003240-38003320 63 4.01e-04 CGCCACAAGG TGAGGGAG GTCTTTGATG chr5:149522593-149522673 8 4.01e-04 cgagcca tgatggtg ttgatggctg chr11:118799021-11879910 29 4.01e-04 TATGGGTGCG TGAGGGTG CCCGTTCGTG chr22:42659137-42659217 31 4.01e-04 tgatagcaag tgatggag ccaggatGAG chr1:208359369-208359449 32 4.01e-04 CATGACTTTC TGAGGGAG TTATCACTAG chr8:96241215-96241295 59 5.37e-04 CAGGGAGATA GGAGGCTG GAGTGTGGGC chr19:52299565-52299645 8 5.37e-04 agtgcag agatgagg tctgagggat chr6:33480131-33480211 19 5.37e-04 TGGTGACAAC AGAGGAGG CCCTTGTGGC chr17:74449338-74449418 24 5.37e-04 CAGGGAGCCG GGATGCAG TTGCTAGGAG chr4:95076716-95076796 14 5.37e-04 tggcagataa ggatgctg tttgcagtgt chr11:63381835-63381915 33 5.37e-04 TCGCGGTCTC GGAGGCAG CGCTGCAGCC chr16:87811497-87811577 51 5.37e-04 GTCTGATCAC GGATGCTG TTGCCTAGGC chr1:235147756-235147836 3 5.37e-04 AA GGATGCTG TGTTGTCACC chr8:48173469-48173549 47 5.69e-04 GGCGGCGCGC TGAGGAGG CGGTGCGCTC chr16:90098810-90098890 53 5.69e-04 TATGGACAGG TGAGGAGG TGTGGTACAG chr16:68098883-68098963 46 5.69e-04 CTGAAATTTC TGATGAGG GAAGAAGATA chr1:228352376-228352456 53 6.74e-04 GTTGTGGGCT GGATGGTG CCTGTCCTTA chr6:13328647-13328727 21 6.74e-04 CCTGCGGGAA GGAGGGAG GCGGCGGGGT chr11:20057381-20057461 39 6.74e-04 ATCTTTTCGG GGATGGTG TTTGTCTGTC chr22:20255926-20256006 30 7.78e-04 GCATTCCTGA AGAGGCGG CGGCCCCTGC chr5:139487287-139487367 28 7.78e-04 CACGGAGTTG GGAGGAGG GGTGGGGAAC chr4:87856227-87856307 47 7.78e-04 CCGAGCCCCG GGAGGAGG CGCTCCCCTG chr22:22652352-22652432 58 7.78e-04 ggcgcggcgg agaggcgg acagcggcgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:33827346-33827426 4e-05 34_[+2]_38 chr16:81515093-81515173 4e-05 17_[+2]_55 chr6:28655581-28655661 4e-05 37_[+2]_35 chr15:51296451-51296531 4e-05 64_[+2]_8 chr1:212101784-212101864 4e-05 48_[+2]_24 chr11:12141803-12141883 4e-05 44_[+2]_28 chr19:45946222-45946302 4e-05 68_[+2]_4 chr10:61895007-61895087 4e-05 13_[+2]_59 chr4:2264181-2264261 4e-05 55_[+2]_17 chr3:196377887-196377967 4e-05 35_[+2]_37 chr17:73070760-73070840 4e-05 38_[+2]_34 chr1:109373259-109373339 4e-05 46_[+2]_26 chrX:102488288-102488368 7.9e-05 27_[+2]_45 chr1:23952669-23952749 7.9e-05 68_[+2]_4 chr12:49794219-49794299 7.9e-05 26_[+2]_46 chr16:27257327-27257407 7.9e-05 13_[+2]_59 chr11:78159789-78159869 7.9e-05 8_[+2]_64 chr7:30186057-30186137 0.00021 63_[+2]_9 chr19:480448-480528 0.00021 58_[+2]_14 chr1:184775577-184775657 0.00021 17_[+2]_55 chr22:23112872-23112952 0.00021 49_[+2]_23 chr4:1901067-1901147 0.00021 19_[+2]_53 chr3:148709239-148709319 0.00021 10_[+2]_62 chr17:77890030-77890110 0.00021 68_[+2]_4 chr13:44717478-44717558 0.00021 9_[+2]_63 chr8:41324636-41324716 0.00021 33_[+2]_39 chr6:18155669-18155749 0.00021 23_[+2]_49 chr14:103588497-10358857 0.00021 50_[+2]_22 chr19:59021259-59021339 0.00021 4_[+2]_68 chr2:103281020-103281100 0.00021 38_[+2]_34 chr19:9945469-9945549 0.00021 25_[+2]_47 chr7:30324536-30324616 0.00021 6_[+2]_66 chr1:167034020-167034100 0.00021 54_[+2]_18 chr10:99387577-99387657 0.00027 5_[+2]_67 chr16:27246815-27246895 0.00027 18_[+2]_54 chr6:31514593-31514673 0.00027 58_[+2]_14 chr22:22921709-22921789 0.00027 59_[+2]_13 chr2:113450231-113450311 0.00027 19_[+2]_53 chr17:71251895-71251975 0.00027 4_[+2]_68 chr12:120426761-12042684 0.00027 7_[+2]_65 chr8:27219390-27219470 0.00027 6_[+2]_66 chr15:81194768-81194848 0.00027 8_[+2]_64 chr15:89560872-89560952 0.00027 51_[+2]_21 chr15:40559149-40559229 0.00034 44_[+2]_28 chr5:36740028-36740108 0.00034 27_[+2]_45 chr10:65343293-65343373 0.00034 27_[+2]_45 chr1:19986427-19986507 0.00034 17_[+2]_55 chr15:82339515-82339595 0.00034 58_[+2]_14 chr1:33221507-33221587 0.0004 64_[+2]_8 chr22:38003240-38003320 0.0004 62_[+2]_10 chr5:149522593-149522673 0.0004 7_[+2]_65 chr11:118799021-11879910 0.0004 28_[+2]_44 chr22:42659137-42659217 0.0004 30_[+2]_42 chr1:208359369-208359449 0.0004 31_[+2]_41 chr8:96241215-96241295 0.00054 58_[+2]_14 chr19:52299565-52299645 0.00054 7_[+2]_65 chr6:33480131-33480211 0.00054 18_[+2]_54 chr17:74449338-74449418 0.00054 23_[+2]_49 chr4:95076716-95076796 0.00054 13_[+2]_59 chr11:63381835-63381915 0.00054 32_[+2]_40 chr16:87811497-87811577 0.00054 50_[+2]_22 chr1:235147756-235147836 0.00054 2_[+2]_70 chr8:48173469-48173549 0.00057 46_[+2]_26 chr16:90098810-90098890 0.00057 52_[+2]_20 chr16:68098883-68098963 0.00057 45_[+2]_27 chr1:228352376-228352456 0.00067 52_[+2]_20 chr6:13328647-13328727 0.00067 20_[+2]_52 chr11:20057381-20057461 0.00067 38_[+2]_34 chr22:20255926-20256006 0.00078 29_[+2]_43 chr5:139487287-139487367 0.00078 27_[+2]_45 chr4:87856227-87856307 0.00078 46_[+2]_26 chr22:22652352-22652432 0.00078 57_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGAKGMWG width=8 seqs=72 chr1:33827346-33827426 ( 35) AGAGGAAG 1 chr16:81515093-81515173 ( 18) AGAGGAAG 1 chr6:28655581-28655661 ( 38) AGAGGAAG 1 chr15:51296451-51296531 ( 65) AGAGGAAG 1 chr1:212101784-212101864 ( 49) AGAGGATG 1 chr11:12141803-12141883 ( 45) AGAGGATG 1 chr19:45946222-45946302 ( 69) AGAGGAAG 1 chr10:61895007-61895087 ( 14) AGAGGATG 1 chr4:2264181-2264261 ( 56) AGAGGAAG 1 chr3:196377887-196377967 ( 36) AGAGGAAG 1 chr17:73070760-73070840 ( 39) AGAGGAAG 1 chr1:109373259-109373339 ( 47) AGAGGATG 1 chrX:102488288-102488368 ( 28) TGAGGAAG 1 chr1:23952669-23952749 ( 69) TGATGATG 1 chr12:49794219-49794299 ( 27) TGAGGATG 1 chr16:27257327-27257407 ( 14) TGATGATG 1 chr11:78159789-78159869 ( 9) TGAGGAAG 1 chr7:30186057-30186137 ( 64) GGATGATG 1 chr19:480448-480528 ( 59) GGATGATG 1 chr1:184775577-184775657 ( 18) AGAGGCAG 1 chr22:23112872-23112952 ( 50) AGATGCTG 1 chr4:1901067-1901147 ( 20) AGATGCAG 1 chr3:148709239-148709319 ( 11) GGAGGATG 1 chr17:77890030-77890110 ( 69) AGAGGCTG 1 chr13:44717478-44717558 ( 10) GGAGGAAG 1 chr8:41324636-41324716 ( 34) GGATGATG 1 chr6:18155669-18155749 ( 24) AGAGGCTG 1 chr14:103588497-10358857 ( 51) GGATGATG 1 chr19:59021259-59021339 ( 5) AGAGGCAG 1 chr2:103281020-103281100 ( 39) GGAGGATG 1 chr19:9945469-9945549 ( 26) AGAGGCAG 1 chr7:30324536-30324616 ( 7) GGAGGATG 1 chr1:167034020-167034100 ( 55) GGATGATG 1 chr10:99387577-99387657 ( 6) TGATGCTG 1 chr16:27246815-27246895 ( 19) TGAGGCAG 1 chr6:31514593-31514673 ( 59) TGAGGCAG 1 chr22:22921709-22921789 ( 60) TGATGCTG 1 chr2:113450231-113450311 ( 20) TGATGCTG 1 chr17:71251895-71251975 ( 5) TGATGCTG 1 chr12:120426761-12042684 ( 8) TGAGGCAG 1 chr8:27219390-27219470 ( 7) TGATGCAG 1 chr15:81194768-81194848 ( 9) TGAGGCAG 1 chr15:89560872-89560952 ( 52) TGATGCTG 1 chr15:40559149-40559229 ( 45) AGAGGGTG 1 chr5:36740028-36740108 ( 28) AGATGGAG 1 chr10:65343293-65343373 ( 28) AGATGGAG 1 chr1:19986427-19986507 ( 18) AGAGGGAG 1 chr15:82339515-82339595 ( 59) AGAGGGAG 1 chr1:33221507-33221587 ( 65) TGATGGAG 1 chr22:38003240-38003320 ( 63) TGAGGGAG 1 chr5:149522593-149522673 ( 8) TGATGGTG 1 chr11:118799021-11879910 ( 29) TGAGGGTG 1 chr22:42659137-42659217 ( 31) TGATGGAG 1 chr1:208359369-208359449 ( 32) TGAGGGAG 1 chr8:96241215-96241295 ( 59) GGAGGCTG 1 chr19:52299565-52299645 ( 8) AGATGAGG 1 chr6:33480131-33480211 ( 19) AGAGGAGG 1 chr17:74449338-74449418 ( 24) GGATGCAG 1 chr4:95076716-95076796 ( 14) GGATGCTG 1 chr11:63381835-63381915 ( 33) GGAGGCAG 1 chr16:87811497-87811577 ( 51) GGATGCTG 1 chr1:235147756-235147836 ( 3) GGATGCTG 1 chr8:48173469-48173549 ( 47) TGAGGAGG 1 chr16:90098810-90098890 ( 53) TGAGGAGG 1 chr16:68098883-68098963 ( 46) TGATGAGG 1 chr1:228352376-228352456 ( 53) GGATGGTG 1 chr6:13328647-13328727 ( 21) GGAGGGAG 1 chr11:20057381-20057461 ( 39) GGATGGTG 1 chr22:20255926-20256006 ( 30) AGAGGCGG 1 chr5:139487287-139487367 ( 28) GGAGGAGG 1 chr4:87856227-87856307 ( 47) GGAGGAGG 1 chr22:22652352-22652432 ( 58) AGAGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 3.6e-008 103 -1281 -16 81 -1281 -1281 169 -1281 239 -1281 -1281 -1281 -1281 -1281 98 103 -1281 -1281 169 -1281 126 17 -67 -1281 117 -1281 -131 122 -1281 -1281 169 -1281 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 3.6e-008 0.388889 0.000000 0.277778 0.333333 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.611111 0.388889 0.000000 0.000000 1.000000 0.000000 0.458333 0.347222 0.194444 0.000000 0.430556 0.000000 0.125000 0.444444 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGAKGMWG MEME-2 regular expression -------------------------------------------------------------------------------- [ATG]GA[GT]G[AC][TA]G -------------------------------------------------------------------------------- Time 8.49 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCATCM MEME-3 width = 8 sites = 48 llr = 375 E-value = 7.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 28::a::3 pos.-specific C 7:3a::a5 probability G 1:6::::: matrix T :3:::a:2 bits 2.4 * 2.2 ** 1.9 ** 1.7 * **** Relative 1.4 * **** Entropy 1.2 * **** (11.3 bits) 1.0 * **** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCATCC consensus TC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:75471765-75471845 6 1.21e-05 GGTGA CAGCATCA TCCGAAAGTC chr1:32166799-32166879 8 1.21e-05 CTGTCTT CAGCATCA CAGCAGCAAT chr12:94483862-94483942 29 1.21e-05 accactgaca caGCATCA TAAAGTATCT chr10:121186909-12118698 47 1.21e-05 cTGCCATCat cagcatca ccgccatcat chr2:28731386-28731466 26 3.15e-05 CAGGTCCATG CAGCATCC TACAGTCCCT chr4:1901067-1901147 28 3.15e-05 ggagatgcag cagcatcc atgaccgcaa chr10:99387577-99387657 57 3.15e-05 CCCACAAGGT CAGCATCC AATTTCAGGC chr15:90607173-90607253 60 3.15e-05 ggattgaact cagCATCC AGGGCCAAGG chr19:45946222-45946302 30 3.15e-05 GCCTTAAGAC CAGCATCC CTAGTCATGC chr19:13283378-13283458 40 3.15e-05 TCCGCCATCC CAGCATCC CCATAAAGGT chr19:51510891-51510971 66 5.55e-05 AATTCCCACA CAGCATCT CTTACCA chr19:59021259-59021339 55 5.55e-05 CAGATAAGGA CAGCATCT TGCTCATCTG chr13:114919167-11491924 11 5.55e-05 cattccatca caccatca tctccatcat chr8:103820856-103820936 71 7.48e-05 GCGGATGTGT CACCATCC TC chr17:46578494-46578574 68 7.48e-05 CAGGGCCTGT CACCATCC CAGCC chr22:40361850-40361930 63 7.48e-05 AAGAGAACTC CACCATCC CAGATGTGAG chr11:36137161-36137241 70 8.23e-05 TCCTCACCTC AAGCATCA TCC chr22:21161879-21161959 36 8.23e-05 TCATCCTCTT AAGCATCA GACCAAGGAA chr6:7107114-7107194 63 9.44e-05 TTCCCCGCTG AAGCATCC TTTGTGGGGT chr1:19986427-19986507 54 9.44e-05 GTCAATTGAG AAGCATCC CTTGGTGTGC chr5:68303715-68303795 29 9.44e-05 GCCAGGTGCT AAGCATCC TTCCCTGTCT chr1:208359369-208359449 13 9.44e-05 CAGGTGGGGA AAGCATCC CCATGACTTT chr11:44564040-44564120 6 1.06e-04 agcat ctgcatca tcatcgctat chr4:129375609-129375689 15 1.26e-04 CGTTGGCTTT CTGCATCC CTCCAGATGA chr1:155829325-155829405 18 1.26e-04 CTGACTGCAC CTGCATCC TTAGCTCAGC chr19:18491267-18491347 48 1.26e-04 GGCCACCTGC CTGCATCC GCCCCATCTC chr1:47048760-47048840 28 1.38e-04 CACAGATAAC CACCATCT GGCTCTAACT chr5:134471600-134471680 9 1.53e-04 ATGGGCCG AAGCATCT CTCTTGGGAC chr7:75536526-75536606 72 1.77e-04 AAGGGGAATA AACCATCC T chr1:59509554-59509634 73 1.77e-04 CCCAGGAACT AACCATCC chr19:40724229-40724309 24 1.77e-04 GGGCAGCGCT GAGCATCA GCACCGGGGA chr5:173164289-173164369 33 1.77e-04 CTGCTGGAGT GAGCATCA GTTGTAGATA chr2:113450231-113450311 54 1.77e-04 CCTGCGGAGT GAGCATCA GAGCTCATGA chr11:78159789-78159869 64 1.77e-04 TGCAGTTCAT GAGCATCA AATGAGAGA chr10:72409459-72409539 35 2.20e-04 tgactcatcc ctccatca gtcagcagtt chr11:56912155-56912235 67 2.20e-04 ATGTCCCTCT CTCCATCA CACTTC chr17:31203662-31203742 20 2.40e-04 CCGGCCGCGC CTCCATCC CTGGAGCTTG chr3:196254752-196254832 29 2.40e-04 CATCTGCAGG CTCCATCC TCTTATCCTT chr15:82386252-82386332 17 2.40e-04 cgccacccag ctccatcc tgcccgggat chr17:73070760-73070840 72 2.40e-04 TGCTGAGCAG CTCCATCC A chr1:59465584-59465664 27 2.67e-04 TACAGAATGT CAACATCA CACTGCACAT chr1:182118689-182118769 13 2.86e-04 GCCATGGTGG CAACATCC TTGCTCCATT chr16:81515093-81515173 32 3.10e-04 GAAGTCCAGG GAGCATCT GCGTGGGATG chr10:79342730-79342810 20 3.10e-04 GAGATTACGA GAGCATCT CCCTCCCCTC chr5:141049288-141049368 26 3.42e-04 AGACTGTCAG CTCCATCT GTGCCAAAAT chr15:67471221-67471301 68 3.42e-04 TGCTTTGCCT CTCCATCT TGATG chr15:51296451-51296531 18 5.22e-04 CTACCTCTGT CAGCAGCA TGCCTCGCCC chr1:165797074-165797154 33 5.53e-04 GCAGAACCAC CAGCAGCC CAACGGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:75471765-75471845 1.2e-05 5_[+3]_67 chr1:32166799-32166879 1.2e-05 7_[+3]_65 chr12:94483862-94483942 1.2e-05 28_[+3]_44 chr10:121186909-12118698 1.2e-05 46_[+3]_26 chr2:28731386-28731466 3.1e-05 25_[+3]_47 chr4:1901067-1901147 3.1e-05 27_[+3]_45 chr10:99387577-99387657 3.1e-05 56_[+3]_16 chr15:90607173-90607253 3.1e-05 59_[+3]_13 chr19:45946222-45946302 3.1e-05 29_[+3]_43 chr19:13283378-13283458 3.1e-05 39_[+3]_33 chr19:51510891-51510971 5.6e-05 65_[+3]_7 chr19:59021259-59021339 5.6e-05 54_[+3]_18 chr13:114919167-11491924 5.6e-05 10_[+3]_62 chr8:103820856-103820936 7.5e-05 70_[+3]_2 chr17:46578494-46578574 7.5e-05 67_[+3]_5 chr22:40361850-40361930 7.5e-05 62_[+3]_10 chr11:36137161-36137241 8.2e-05 69_[+3]_3 chr22:21161879-21161959 8.2e-05 35_[+3]_37 chr6:7107114-7107194 9.4e-05 62_[+3]_10 chr1:19986427-19986507 9.4e-05 53_[+3]_19 chr5:68303715-68303795 9.4e-05 28_[+3]_44 chr1:208359369-208359449 9.4e-05 12_[+3]_60 chr11:44564040-44564120 0.00011 5_[+3]_67 chr4:129375609-129375689 0.00013 14_[+3]_58 chr1:155829325-155829405 0.00013 17_[+3]_55 chr19:18491267-18491347 0.00013 47_[+3]_25 chr1:47048760-47048840 0.00014 27_[+3]_45 chr5:134471600-134471680 0.00015 8_[+3]_64 chr7:75536526-75536606 0.00018 71_[+3]_1 chr1:59509554-59509634 0.00018 72_[+3] chr19:40724229-40724309 0.00018 23_[+3]_49 chr5:173164289-173164369 0.00018 32_[+3]_40 chr2:113450231-113450311 0.00018 53_[+3]_19 chr11:78159789-78159869 0.00018 63_[+3]_9 chr10:72409459-72409539 0.00022 34_[+3]_38 chr11:56912155-56912235 0.00022 66_[+3]_6 chr17:31203662-31203742 0.00024 19_[+3]_53 chr3:196254752-196254832 0.00024 28_[+3]_44 chr15:82386252-82386332 0.00024 16_[+3]_56 chr17:73070760-73070840 0.00024 71_[+3]_1 chr1:59465584-59465664 0.00027 26_[+3]_46 chr1:182118689-182118769 0.00029 12_[+3]_60 chr16:81515093-81515173 0.00031 31_[+3]_41 chr10:79342730-79342810 0.00031 19_[+3]_53 chr5:141049288-141049368 0.00034 25_[+3]_47 chr15:67471221-67471301 0.00034 67_[+3]_5 chr15:51296451-51296531 0.00052 17_[+3]_55 chr1:165797074-165797154 0.00055 32_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCATCM width=8 seqs=48 chr5:75471765-75471845 ( 6) CAGCATCA 1 chr1:32166799-32166879 ( 8) CAGCATCA 1 chr12:94483862-94483942 ( 29) CAGCATCA 1 chr10:121186909-12118698 ( 47) CAGCATCA 1 chr2:28731386-28731466 ( 26) CAGCATCC 1 chr4:1901067-1901147 ( 28) CAGCATCC 1 chr10:99387577-99387657 ( 57) CAGCATCC 1 chr15:90607173-90607253 ( 60) CAGCATCC 1 chr19:45946222-45946302 ( 30) CAGCATCC 1 chr19:13283378-13283458 ( 40) CAGCATCC 1 chr19:51510891-51510971 ( 66) CAGCATCT 1 chr19:59021259-59021339 ( 55) CAGCATCT 1 chr13:114919167-11491924 ( 11) CACCATCA 1 chr8:103820856-103820936 ( 71) CACCATCC 1 chr17:46578494-46578574 ( 68) CACCATCC 1 chr22:40361850-40361930 ( 63) CACCATCC 1 chr11:36137161-36137241 ( 70) AAGCATCA 1 chr22:21161879-21161959 ( 36) AAGCATCA 1 chr6:7107114-7107194 ( 63) AAGCATCC 1 chr1:19986427-19986507 ( 54) AAGCATCC 1 chr5:68303715-68303795 ( 29) AAGCATCC 1 chr1:208359369-208359449 ( 13) AAGCATCC 1 chr11:44564040-44564120 ( 6) CTGCATCA 1 chr4:129375609-129375689 ( 15) CTGCATCC 1 chr1:155829325-155829405 ( 18) CTGCATCC 1 chr19:18491267-18491347 ( 48) CTGCATCC 1 chr1:47048760-47048840 ( 28) CACCATCT 1 chr5:134471600-134471680 ( 9) AAGCATCT 1 chr7:75536526-75536606 ( 72) AACCATCC 1 chr1:59509554-59509634 ( 73) AACCATCC 1 chr19:40724229-40724309 ( 24) GAGCATCA 1 chr5:173164289-173164369 ( 33) GAGCATCA 1 chr2:113450231-113450311 ( 54) GAGCATCA 1 chr11:78159789-78159869 ( 64) GAGCATCA 1 chr10:72409459-72409539 ( 35) CTCCATCA 1 chr11:56912155-56912235 ( 67) CTCCATCA 1 chr17:31203662-31203742 ( 20) CTCCATCC 1 chr3:196254752-196254832 ( 29) CTCCATCC 1 chr15:82386252-82386332 ( 17) CTCCATCC 1 chr17:73070760-73070840 ( 72) CTCCATCC 1 chr1:59465584-59465664 ( 27) CAACATCA 1 chr1:182118689-182118769 ( 13) CAACATCC 1 chr16:81515093-81515173 ( 32) GAGCATCT 1 chr10:79342730-79342810 ( 20) GAGCATCT 1 chr5:141049288-141049368 ( 26) CTCCATCT 1 chr15:67471221-67471301 ( 68) CTCCATCT 1 chr15:51296451-51296531 ( 18) CAGCAGCA 1 chr1:165797074-165797154 ( 33) CAGCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 7.5e-004 -3 116 -131 -1223 197 -1223 -1223 39 -219 2 106 -1223 -1223 170 -1223 -1223 239 -1223 -1223 -1223 -1223 -1223 -289 233 -1223 170 -1223 -1223 80 70 -1223 -19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 7.5e-004 0.187500 0.687500 0.125000 0.000000 0.750000 0.000000 0.000000 0.250000 0.041667 0.312500 0.645833 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.041667 0.958333 0.000000 1.000000 0.000000 0.000000 0.333333 0.500000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCATCM MEME-3 regular expression -------------------------------------------------------------------------------- C[AT][GC]CATC[CA] -------------------------------------------------------------------------------- Time 12.00 secs. ******************************************************************************** ******************************************************************************** MOTIF VCHTCCTS MEME-4 width = 8 sites = 62 llr = 438 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:3::3:: pos.-specific C 4a3:a7:5 probability G 3::::::4 matrix T 2:4a::a1 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** * Relative 1.4 * ** * Entropy 1.2 * ** * (10.2 bits) 1.0 * **** 0.7 * **** 0.5 ******* 0.2 ******* 0.0 -------- Multilevel CCTTCCTC consensus G A A G sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:131451313-131451393 35 6.26e-05 tcgccgcgcg ccTTCCTC CCACCTCTCG chr19:962374-962454 73 6.26e-05 CCTTCTGTAA ACATCCTC chr3:193512126-193512206 73 6.26e-05 GGGGAGATGA ACATCCTC chr2:54801655-54801735 21 6.26e-05 CATGTGGTTT CCTTCCTC CTGCCTTTGG chr11:66607940-66608020 72 6.26e-05 GTGACCTTGA ACTTCCTC C chr1:110331976-110332056 59 6.26e-05 TCCCTGGTCT ACTTCCTC TTCTCTGCCC chr1:150533940-150534020 33 6.26e-05 AGCCTGGCCT CCTTCCTC CTCCTACTCG chr15:66194874-66194954 55 6.26e-05 GCTCTTAGAT ACTTCCTC ATCCTTTCAT chr22:42659137-42659217 54 6.26e-05 atGAGGTTGC ACATCCTC CTTCACACGC chr6:159053387-159053467 8 6.26e-05 GGGCAGT CCTTCCTC GTTGAGTGGC chr5:68303715-68303795 5 6.26e-05 AGAC ACTTCCTC CCACTCGCCA chr3:37011562-37011642 22 1.64e-04 TATGCCCCCA CCTTCCTG AACTGTCTCT chr1:59509554-59509634 11 1.64e-04 agctctgtct gcttcctc tggctattgc chr17:28671956-28672036 35 1.64e-04 GTCCATCAAC ACATCCTG GTCCTTACCC chr3:9993994-9994074 71 1.64e-04 TCGCCGCGCC GCATCCTC CG chr18:33039017-33039097 8 1.64e-04 CAGAGCC CCATCCTG TCCTCCTTAT chr1:59465584-59465664 69 1.64e-04 TCGCTAGCCA GCTTCCTC GCAT chr7:116570680-116570760 54 1.64e-04 CGAGTCCAGG ACATCCTG TGTCCCATCC chr19:35636117-35636197 33 1.64e-04 GCAACCACCT CCTTCCTG ATATCTCTTT chr22:21161879-21161959 26 1.88e-04 TCTACTGTCT TCATCCTC TTAAGCATCA chr8:27219390-27219470 38 1.88e-04 GGAATTTTTC TCATCCTC CTAGTCATCA chr9:129486240-129486320 43 2.66e-04 TCACTCAGCG ACATCATC GTTACCATGG chr4:1901067-1901147 1 2.66e-04 . gcatcctg tgcgttgcag chr13:44717478-44717558 52 2.66e-04 TGGAATGTAG CCATCATC TTATCTGACC chr16:27246815-27246895 71 2.66e-04 GCTGCCGCGG GCTTCCTG TC chr14:103588497-10358857 1 2.66e-04 . GCATCCTG GCGGCCTCCC chr19:59021259-59021339 26 2.66e-04 CGTGTAAACC ACATCATC AGCTGTGGCC chr11:44564040-44564120 65 2.66e-04 gcaaccatct ccatcatc accaccat chr13:114919167-11491924 63 2.66e-04 actccatact ccatcatc tccatcactc chr15:67471221-67471301 4 2.66e-04 ATG CCTTCATC CTTATCTTCC chr5:36740028-36740108 51 2.90e-04 ttcatcagca tcttcctg ataataacTG chr11:36137161-36137241 57 4.04e-04 ACGCCCCAGT CCCTCCTC ACCTCAAGCA chr3:186285062-186285142 73 4.04e-04 CCGCCCCTCA CCCTCCTC chr1:87241268-87241348 64 4.04e-04 tgtcttttca acctcctc tgacagcct chr19:51510891-51510971 30 4.04e-04 AAAGGAGGTT CCATCATG GAGCAATGCA chr10:72409459-72409539 19 4.04e-04 gagctggcct ccatcatg actcatccct chr15:74683399-74683479 2 4.04e-04 g ccatcatg agcaccacac chr1:208359369-208359449 71 4.19e-04 GAGAGCGCTA TCTTCATC AC chr3:45133889-45133969 29 5.64e-04 tcaactaatc ccttcctt accttcagga chr1:8086401-8086481 40 5.64e-04 GTCCCGCCCC GCCTCCTC CCGCAGCCAA chr12:42538578-42538658 7 5.64e-04 CCGCTC CCTTCCTT CCCTCCCCGC chr1:165797074-165797154 55 5.64e-04 GGCGGCGAGC CCTTCCTT ATAGGCGTCA chr1:234614675-234614755 32 5.64e-04 GCTGCCGCGC GCCTCCTC GTCCTCGAGC chr11:47359011-47359091 35 5.64e-04 CATGCGCCGC GCTTCATG ACTCAGCTCC chr19:9945469-9945549 51 5.64e-04 CCGCCCAAGT ACCTCCTG GACCGCCGTT chr11:20057381-20057461 10 5.64e-04 TTGTCCGGG GCTTCATG GCACAGATTG chr10:23727977-23728057 44 5.98e-04 CGCACCGCGC TCCTCCTC GCCGGCGGGA chr6:33873086-33873166 39 5.98e-04 GGCACCCGGA TCCTCCTC CTTATCTCAG chr19:14202187-14202267 25 6.85e-04 CCGCCGCTCG GCCTCCTG GCGCGCCAGC chr16:57725189-57725269 61 6.85e-04 GGATGGCTGG GCCTCCTG GCTCAGAAGG chr11:56912155-56912235 27 6.85e-04 CCCTGTATCT GCTTCCTT TTGCTCTCTG chr17:67323309-67323389 37 6.85e-04 GTCGCGCCCC GCCTCCTG CAGAGCGCAC chr19:46406344-46406424 24 6.85e-04 AAACCGCTTT GCCTCCTG GCTTGCCCGC chr15:82386252-82386332 40 7.20e-04 gggatgtgaa tcatcctt ttgtccatcg chr1:109373259-109373339 9 7.20e-04 CGTTGGGA TCCTCCTG CGCCACAAAG chr7:75536526-75536606 44 7.95e-04 TTGCCTTGCA CCCTCATG GACGCCTCTC chr17:79980966-79981046 54 7.95e-04 CGGGGCCCCA CCCTCATG CCCCTAGCCA chr1:205218284-205218364 18 8.72e-04 CTTCCCTGTG GCCTCATG GTGTTATCTC chr5:138775035-138775115 34 8.72e-04 GCCGCCCTAT CCCTCCTT CAGGCGGGGA chr6:25910649-25910729 22 8.94e-04 GCATTCTGAG TCATCATT GTTCTTATCA chr2:9346500-9346580 15 8.94e-04 CACCCCGCTT TCCTCATG GGCCGGCGCG chr2:12633403-12633483 34 9.13e-04 TCCACGCTTG GCCTCCTT CCCTGTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:131451313-131451393 6.3e-05 34_[+4]_38 chr19:962374-962454 6.3e-05 72_[+4] chr3:193512126-193512206 6.3e-05 72_[+4] chr2:54801655-54801735 6.3e-05 20_[+4]_52 chr11:66607940-66608020 6.3e-05 71_[+4]_1 chr1:110331976-110332056 6.3e-05 58_[+4]_14 chr1:150533940-150534020 6.3e-05 32_[+4]_40 chr15:66194874-66194954 6.3e-05 54_[+4]_18 chr22:42659137-42659217 6.3e-05 53_[+4]_19 chr6:159053387-159053467 6.3e-05 7_[+4]_65 chr5:68303715-68303795 6.3e-05 4_[+4]_68 chr3:37011562-37011642 0.00016 21_[+4]_51 chr1:59509554-59509634 0.00016 10_[+4]_62 chr17:28671956-28672036 0.00016 34_[+4]_38 chr3:9993994-9994074 0.00016 70_[+4]_2 chr18:33039017-33039097 0.00016 7_[+4]_65 chr1:59465584-59465664 0.00016 68_[+4]_4 chr7:116570680-116570760 0.00016 53_[+4]_19 chr19:35636117-35636197 0.00016 32_[+4]_40 chr22:21161879-21161959 0.00019 25_[+4]_47 chr8:27219390-27219470 0.00019 37_[+4]_35 chr9:129486240-129486320 0.00027 42_[+4]_30 chr4:1901067-1901147 0.00027 [+4]_72 chr13:44717478-44717558 0.00027 51_[+4]_21 chr16:27246815-27246895 0.00027 70_[+4]_2 chr14:103588497-10358857 0.00027 [+4]_72 chr19:59021259-59021339 0.00027 25_[+4]_47 chr11:44564040-44564120 0.00027 64_[+4]_8 chr13:114919167-11491924 0.00027 62_[+4]_10 chr15:67471221-67471301 0.00027 3_[+4]_69 chr5:36740028-36740108 0.00029 50_[+4]_22 chr11:36137161-36137241 0.0004 56_[+4]_16 chr3:186285062-186285142 0.0004 72_[+4] chr1:87241268-87241348 0.0004 63_[+4]_9 chr19:51510891-51510971 0.0004 29_[+4]_43 chr10:72409459-72409539 0.0004 18_[+4]_54 chr15:74683399-74683479 0.0004 1_[+4]_71 chr1:208359369-208359449 0.00042 70_[+4]_2 chr3:45133889-45133969 0.00056 28_[+4]_44 chr1:8086401-8086481 0.00056 39_[+4]_33 chr12:42538578-42538658 0.00056 6_[+4]_66 chr1:165797074-165797154 0.00056 54_[+4]_18 chr1:234614675-234614755 0.00056 31_[+4]_41 chr11:47359011-47359091 0.00056 34_[+4]_38 chr19:9945469-9945549 0.00056 50_[+4]_22 chr11:20057381-20057461 0.00056 9_[+4]_63 chr10:23727977-23728057 0.0006 43_[+4]_29 chr6:33873086-33873166 0.0006 38_[+4]_34 chr19:14202187-14202267 0.00069 24_[+4]_48 chr16:57725189-57725269 0.00069 60_[+4]_12 chr11:56912155-56912235 0.00069 26_[+4]_46 chr17:67323309-67323389 0.00069 36_[+4]_36 chr19:46406344-46406424 0.00069 23_[+4]_49 chr15:82386252-82386332 0.00072 39_[+4]_33 chr1:109373259-109373339 0.00072 8_[+4]_64 chr7:75536526-75536606 0.00079 43_[+4]_29 chr17:79980966-79981046 0.00079 53_[+4]_19 chr1:205218284-205218364 0.00087 17_[+4]_55 chr5:138775035-138775115 0.00087 33_[+4]_39 chr6:25910649-25910729 0.00089 21_[+4]_51 chr2:9346500-9346580 0.00089 14_[+4]_58 chr2:12633403-12633483 0.00091 33_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VCHTCCTS width=8 seqs=62 chr9:131451313-131451393 ( 35) CCTTCCTC 1 chr19:962374-962454 ( 73) ACATCCTC 1 chr3:193512126-193512206 ( 73) ACATCCTC 1 chr2:54801655-54801735 ( 21) CCTTCCTC 1 chr11:66607940-66608020 ( 72) ACTTCCTC 1 chr1:110331976-110332056 ( 59) ACTTCCTC 1 chr1:150533940-150534020 ( 33) CCTTCCTC 1 chr15:66194874-66194954 ( 55) ACTTCCTC 1 chr22:42659137-42659217 ( 54) ACATCCTC 1 chr6:159053387-159053467 ( 8) CCTTCCTC 1 chr5:68303715-68303795 ( 5) ACTTCCTC 1 chr3:37011562-37011642 ( 22) CCTTCCTG 1 chr1:59509554-59509634 ( 11) GCTTCCTC 1 chr17:28671956-28672036 ( 35) ACATCCTG 1 chr3:9993994-9994074 ( 71) GCATCCTC 1 chr18:33039017-33039097 ( 8) CCATCCTG 1 chr1:59465584-59465664 ( 69) GCTTCCTC 1 chr7:116570680-116570760 ( 54) ACATCCTG 1 chr19:35636117-35636197 ( 33) CCTTCCTG 1 chr22:21161879-21161959 ( 26) TCATCCTC 1 chr8:27219390-27219470 ( 38) TCATCCTC 1 chr9:129486240-129486320 ( 43) ACATCATC 1 chr4:1901067-1901147 ( 1) GCATCCTG 1 chr13:44717478-44717558 ( 52) CCATCATC 1 chr16:27246815-27246895 ( 71) GCTTCCTG 1 chr14:103588497-10358857 ( 1) GCATCCTG 1 chr19:59021259-59021339 ( 26) ACATCATC 1 chr11:44564040-44564120 ( 65) CCATCATC 1 chr13:114919167-11491924 ( 63) CCATCATC 1 chr15:67471221-67471301 ( 4) CCTTCATC 1 chr5:36740028-36740108 ( 51) TCTTCCTG 1 chr11:36137161-36137241 ( 57) CCCTCCTC 1 chr3:186285062-186285142 ( 73) CCCTCCTC 1 chr1:87241268-87241348 ( 64) ACCTCCTC 1 chr19:51510891-51510971 ( 30) CCATCATG 1 chr10:72409459-72409539 ( 19) CCATCATG 1 chr15:74683399-74683479 ( 2) CCATCATG 1 chr1:208359369-208359449 ( 71) TCTTCATC 1 chr3:45133889-45133969 ( 29) CCTTCCTT 1 chr1:8086401-8086481 ( 40) GCCTCCTC 1 chr12:42538578-42538658 ( 7) CCTTCCTT 1 chr1:165797074-165797154 ( 55) CCTTCCTT 1 chr1:234614675-234614755 ( 32) GCCTCCTC 1 chr11:47359011-47359091 ( 35) GCTTCATG 1 chr19:9945469-9945549 ( 51) ACCTCCTG 1 chr11:20057381-20057461 ( 10) GCTTCATG 1 chr10:23727977-23728057 ( 44) TCCTCCTC 1 chr6:33873086-33873166 ( 39) TCCTCCTC 1 chr19:14202187-14202267 ( 25) GCCTCCTG 1 chr16:57725189-57725269 ( 61) GCCTCCTG 1 chr11:56912155-56912235 ( 27) GCTTCCTT 1 chr17:67323309-67323389 ( 37) GCCTCCTG 1 chr19:46406344-46406424 ( 24) GCCTCCTG 1 chr15:82386252-82386332 ( 40) TCATCCTT 1 chr1:109373259-109373339 ( 9) TCCTCCTG 1 chr7:75536526-75536606 ( 44) CCCTCATG 1 chr17:79980966-79981046 ( 54) CCCTCATG 1 chr1:205218284-205218364 ( 18) GCCTCATG 1 chr5:138775035-138775115 ( 34) CCCTCCTT 1 chr6:25910649-25910729 ( 22) TCATCATT 1 chr2:9346500-9346580 ( 15) TCCTCATG 1 chr2:12633403-12633483 ( 34) GCCTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.90467 E= 1.3e+004 14 20 -18 -24 -1260 170 -1260 -1260 83 -1 -1260 90 -1260 -1260 -1260 239 -1260 170 -1260 -1260 52 124 -1260 -1260 -1260 -1260 -1260 239 -1260 65 32 -56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.3e+004 0.209677 0.354839 0.274194 0.161290 0.000000 1.000000 0.000000 0.000000 0.338710 0.306452 0.000000 0.354839 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.274194 0.725806 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.483871 0.387097 0.129032 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCHTCCTS MEME-4 regular expression -------------------------------------------------------------------------------- [CGA]C[TAC]TC[CA]T[CG] -------------------------------------------------------------------------------- Time 15.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CACATTCC MEME-5 width = 8 sites = 6 llr = 68 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:::: pos.-specific C a:a:::aa probability G :::::::: matrix T ::::aa:: bits 2.4 * *** 2.2 * *** 1.9 * *** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACATTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:45133889-45133969 60 1.20e-05 ataaaaccca cacattcc acactgatga chr2:12633403-12633483 71 1.20e-05 TTTCAGAAAA CACATTCC AC chr18:33039017-33039097 48 1.20e-05 CAGCCTGAGC CACATTCC TCCTGCCTGA chr10:75408920-75409000 23 1.20e-05 CCACCCCACA CACATTCC TCACCTGCCT chr1:150533940-150534020 2 1.20e-05 C CACATTCC TCAGAGATGG chr19:35636117-35636197 72 1.20e-05 AGGAGTAGTG CACATTCC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:45133889-45133969 1.2e-05 59_[+5]_13 chr2:12633403-12633483 1.2e-05 70_[+5]_2 chr18:33039017-33039097 1.2e-05 47_[+5]_25 chr10:75408920-75409000 1.2e-05 22_[+5]_50 chr1:150533940-150534020 1.2e-05 1_[+5]_71 chr19:35636117-35636197 1.2e-05 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACATTCC width=8 seqs=6 chr3:45133889-45133969 ( 60) CACATTCC 1 chr2:12633403-12633483 ( 71) CACATTCC 1 chr18:33039017-33039097 ( 48) CACATTCC 1 chr10:75408920-75409000 ( 23) CACATTCC 1 chr1:150533940-150534020 ( 2) CACATTCC 1 chr19:35636117-35636197 ( 72) CACATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 1.7e+004 -923 170 -923 -923 239 -923 -923 -923 -923 170 -923 -923 239 -923 -923 -923 -923 -923 -923 239 -923 -923 -923 239 -923 170 -923 -923 -923 170 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.7e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATTCC MEME-5 regular expression -------------------------------------------------------------------------------- CACATTCC -------------------------------------------------------------------------------- Time 18.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:49316012-49316092 8.94e-01 80 chr10:121186909-12118698 6.76e-04 19_[+3(5.55e-05)]_1_[+3(1.21e-05)]_\ 10_[+3(1.21e-05)]_10_[+3(1.21e-05)]_8 chr19:18491267-18491347 1.38e-03 29_[+1(9.48e-05)]_43 chr15:89560872-89560952 5.62e-02 80 chr19:46406344-46406424 1.65e-01 80 chr1:155829325-155829405 1.11e-02 80 chr16:87495233-87495313 7.87e-01 80 chr3:49507710-49507790 8.94e-01 80 chr15:82339515-82339595 4.72e-01 80 chr15:74683399-74683479 1.25e-01 80 chr19:49924434-49924514 5.79e-01 80 chr19:35636117-35636197 5.32e-04 71_[+5(1.20e-05)]_1 chr1:208359369-208359449 2.46e-06 12_[+3(9.44e-05)]_19_[+1(9.21e-06)]_\ 33 chr3:159943456-159943536 9.91e-01 80 chr17:67323309-67323389 4.81e-01 80 chr1:109373259-109373339 4.94e-02 46_[+2(3.97e-05)]_26 chr4:40533433-40533513 9.95e-01 80 chr1:224401400-224401480 4.36e-01 80 chr15:78857509-78857589 6.97e-02 5_[+1(8.46e-05)]_67 chr15:81194768-81194848 1.60e-03 51_[+1(9.48e-05)]_21 chr16:71460597-71460677 7.22e-01 80 chr8:27219390-27219470 6.53e-04 80 chr11:56912155-56912235 1.76e-03 49_[+1(8.46e-05)]_23 chr17:27966422-27966502 7.64e-01 80 chr6:33873086-33873166 1.13e-02 47_[+1(4.37e-05)]_25 chr5:138775035-138775115 3.50e-02 80 chr8:143808825-143808905 2.20e-01 80 chr17:73070760-73070840 1.00e-02 38_[+2(3.97e-05)]_34 chr5:68303715-68303795 1.14e-02 4_[+4(6.26e-05)]_16_[+3(9.44e-05)]_\ 44 chr2:240162257-240162337 4.60e-02 10_[+1(1.38e-05)]_62 chr1:167034020-167034100 4.21e-01 80 chr7:30324536-30324616 4.15e-01 80 chr10:79342730-79342810 5.10e-02 80 chr7:116570680-116570760 5.21e-02 80 chr16:68098883-68098963 2.14e-03 80 chr12:94483862-94483942 1.23e-03 28_[+3(1.21e-05)]_44 chr17:47329644-47329724 1.87e-01 80 chr1:19986427-19986507 3.03e-03 53_[+3(9.44e-05)]_19 chr21:43430793-43430873 7.74e-01 80 chr15:67471221-67471301 1.99e-03 12_[+1(7.25e-05)]_60 chr19:41129877-41129957 6.90e-02 30_[+1(9.21e-06)]_42 chr11:20057381-20057461 5.31e-03 80 chr19:39997805-39997885 9.79e-01 80 chr9:96974544-96974624 9.71e-02 80 chr2:9346500-9346580 3.78e-01 80 chr19:9945469-9945549 2.52e-03 80 chr22:19709875-19709955 2.13e-01 80 chr12:120426761-12042684 4.04e-01 80 chr1:235147756-235147836 1.90e-01 80 chr13:114919167-11491924 4.50e-04 10_[+3(5.55e-05)]_62 chr7:101707146-101707226 3.46e-03 34_[+1(1.38e-05)]_38 chr17:72414967-72415047 4.11e-02 80 chr17:71251895-71251975 2.99e-02 80 chr12:96883269-96883349 9.93e-01 80 chr6:159053387-159053467 5.54e-02 7_[+4(6.26e-05)]_65 chr8:126010567-126010647 2.20e-01 80 chr22:40361850-40361930 2.83e-02 62_[+3(7.48e-05)]_10 chr12:32259635-32259715 8.76e-01 80 chr6:136871657-136871737 9.51e-01 80 chr1:59465584-59465664 2.16e-03 80 chr11:78159789-78159869 3.49e-03 8_[+2(7.95e-05)]_64 chr10:72409459-72409539 5.86e-03 80 chr2:113450231-113450311 7.17e-03 80 chr15:82386252-82386332 5.05e-03 80 chr11:747332-747412 5.25e-01 80 chr3:196377887-196377967 6.60e-02 20_[+2(7.95e-05)]_7_[+2(3.97e-05)]_\ 37 chr10:72972331-72972411 9.79e-01 80 chr19:35932478-35932558 8.04e-03 53_[+1(3.16e-05)]_19 chr5:173164289-173164369 9.39e-02 80 chr16:27257327-27257407 8.83e-02 13_[+2(7.95e-05)]_59 chr19:13283378-13283458 9.01e-05 13_[+1(8.46e-05)]_18_[+3(3.15e-05)]_\ 33 chr22:22921709-22921789 3.05e-01 80 chr2:111880077-111880157 9.99e-01 80 chr2:103281020-103281100 3.15e-02 80 chr1:25870168-25870248 9.78e-01 80 chr6:31514593-31514673 2.63e-01 80 chr6:14868097-14868177 4.71e-02 80 chr22:42659137-42659217 7.17e-03 53_[+4(6.26e-05)]_19 chr11:44564040-44564120 2.69e-03 80 chr22:22652352-22652432 8.30e-01 80 chr16:1728116-1728196 9.99e-01 80 chr10:74036369-74036449 7.56e-01 80 chr15:66194874-66194954 7.12e-03 54_[+4(6.26e-05)]_18 chr2:131113601-131113681 5.85e-01 80 chr19:48610813-48610893 7.31e-01 80 chr19:59021259-59021339 5.44e-05 54_[+3(5.55e-05)]_18 chr12:49794219-49794299 8.87e-02 26_[+2(7.95e-05)]_46 chr4:2264181-2264261 1.92e-01 55_[+2(3.97e-05)]_17 chr1:23952669-23952749 3.78e-01 2_[+2(7.95e-05)]_10_[+2(7.95e-05)]_\ 37_[+2(7.95e-05)]_7 chr8:143808621-143808701 9.99e-01 80 chr2:97018883-97018963 6.42e-02 65_[+1(9.48e-05)]_7 chr9:126030994-126031074 8.04e-01 80 chr10:65281617-65281697 9.55e-01 80 chr6:7107114-7107194 2.06e-02 62_[+3(9.44e-05)]_10 chr1:150533940-150534020 4.60e-04 1_[+5(1.20e-05)]_23_[+4(6.26e-05)]_\ 40 chr16:87811497-87811577 2.80e-01 80 chr15:91576426-91576506 5.30e-01 80 chr14:103588497-10358857 7.01e-03 80 chr6:25910649-25910729 9.42e-03 33_[+1(4.37e-05)]_39 chr18:43988728-43988808 3.44e-01 80 chr11:118799021-11879910 5.48e-01 80 chr15:31618772-31618852 9.99e-01 80 chr17:79917661-79917741 1.00e+00 80 chr12:117443379-11744345 7.70e-01 80 chr16:57725189-57725269 3.86e-01 80 chr1:110331976-110332056 4.86e-02 58_[+4(6.26e-05)]_14 chr4:87856227-87856307 3.53e-01 80 chr16:27246815-27246895 1.12e-02 80 chr5:76788232-76788312 9.79e-01 80 chr1:165812103-165812183 4.08e-01 80 chr10:61895007-61895087 1.21e-03 13_[+2(3.97e-05)]_59 chr19:45946222-45946302 2.26e-03 29_[+3(3.15e-05)]_31_[+2(3.97e-05)]_\ 4 chr6:18155669-18155749 3.72e-02 80 chr1:182118689-182118769 7.25e-03 80 chr2:71192169-71192249 3.46e-01 80 chr1:205218284-205218364 1.42e-02 28_[+1(3.16e-05)]_44 chr20:49347859-49347939 2.22e-01 80 chr17:80056584-80056664 9.67e-01 80 chr1:28270016-28270096 2.00e-01 80 chr19:49925780-49925860 7.46e-01 80 chr11:12141803-12141883 5.02e-03 6_[+1(2.13e-05)]_30_[+2(3.97e-05)]_\ 28 chr19:40724229-40724309 8.81e-02 80 chr16:3054033-3054113 9.75e-01 80 chr8:41324636-41324716 6.04e-02 80 chr18:6729838-6729918 9.41e-01 80 chr13:44717478-44717558 5.24e-04 59_[+1(7.25e-05)]_13 chr11:47359011-47359091 1.07e-01 80 chr16:84173170-84173250 4.54e-01 80 chr15:90319809-90319889 9.43e-01 80 chr22:19711664-19711744 1.00e+00 80 chr10:75408920-75409000 1.33e-03 22_[+5(1.20e-05)]_50 chr6:30847598-30847678 9.48e-03 24_[+1(7.25e-05)]_25_[+1(3.16e-05)]_\ 15 chr1:47048760-47048840 1.56e-03 3_[+1(3.16e-05)]_69 chr7:1067885-1067965 9.84e-01 80 chr11:63381835-63381915 1.62e-01 80 chr19:51510891-51510971 6.88e-04 65_[+3(5.55e-05)]_7 chr11:66607940-66608020 6.81e-03 71_[+4(6.26e-05)]_1 chr15:90607173-90607253 3.20e-02 59_[+3(3.15e-05)]_13 chr14:19614642-19614722 5.69e-01 80 chr10:99387577-99387657 3.22e-04 25_[+1(9.48e-05)]_23_[+3(3.15e-05)]_\ 16 chr4:95076716-95076796 3.98e-01 80 chr10:65343293-65343373 3.64e-01 80 chr20:48610104-48610184 3.03e-01 80 chr2:54801655-54801735 1.67e-02 20_[+4(6.26e-05)]_52 chr3:196254752-196254832 2.11e-04 30_[+4(6.26e-05)]_7_[+1(1.38e-05)]_\ 27 chr9:138863946-138864026 8.41e-01 80 chr11:74952848-74952928 1.00e+00 80 chr2:197221260-197221340 1.44e-01 35_[+1(8.46e-05)]_37 chr16:90098810-90098890 7.03e-01 80 chr1:32166799-32166879 3.23e-04 7_[+3(1.21e-05)]_65 chr1:65720166-65720246 9.98e-01 80 chr19:680361-680441 8.69e-01 80 chr22:36851189-36851269 9.70e-01 80 chr5:36740028-36740108 3.83e-05 45_[+3(5.55e-05)]_27 chr8:22880346-22880426 1.84e-02 55_[+1(4.37e-05)]_17 chr3:100008373-100008453 1.08e-02 30_[+1(4.61e-06)]_42 chr3:193512126-193512206 6.89e-03 72_[+4(6.26e-05)] chr17:77890030-77890110 7.09e-02 80 chr5:134471600-134471680 2.61e-02 80 chr20:61196105-61196185 8.64e-01 80 chr3:148709239-148709319 4.21e-01 80 chr4:1901067-1901147 5.41e-04 27_[+3(3.15e-05)]_45 chr17:18086944-18087024 9.32e-01 80 chr5:141049288-141049368 2.63e-02 80 chr18:33039017-33039097 1.38e-04 47_[+5(1.20e-05)]_25 chr12:120524922-12052500 8.68e-01 80 chr1:24742120-24742200 3.20e-01 80 chr3:9993994-9994074 2.08e-02 80 chr17:28671956-28672036 7.21e-05 53_[+1(2.13e-05)]_19 chr1:234614675-234614755 2.36e-01 80 chr5:133523405-133523485 9.98e-02 80 chr2:28731386-28731466 7.91e-03 25_[+3(3.15e-05)]_47 chr10:72142399-72142479 9.43e-01 80 chr22:23112872-23112952 1.19e-01 80 chr17:31203662-31203742 2.97e-01 80 chr1:87241268-87241348 3.95e-03 32_[+1(4.37e-05)]_40 chr1:212101784-212101864 1.43e-03 4_[+2(7.95e-05)]_36_[+2(3.97e-05)]_\ 24 chr16:81485821-81485901 6.22e-01 80 chrX:48726454-48726534 5.92e-01 80 chr15:40559149-40559229 2.56e-01 80 chr21:40752274-40752354 8.55e-01 80 chr17:79980966-79981046 1.17e-01 80 chr22:18484110-18484190 2.34e-01 80 chr6:13328647-13328727 7.47e-01 80 chr6:106808435-106808515 6.48e-01 80 chr1:165797074-165797154 1.09e-01 80 chr16:88182860-88182940 9.33e-01 80 chr8:26435224-26435304 8.08e-01 80 chr7:142661667-142661747 5.51e-03 30_[+1(4.37e-05)]_42 chr12:42538578-42538658 3.95e-01 80 chr9:77703284-77703364 8.31e-01 80 chr9:129486240-129486320 8.90e-04 29_[+1(9.21e-06)]_43 chr15:51296451-51296531 2.58e-03 64_[+2(3.97e-05)]_8 chr6:28655581-28655661 2.76e-02 9_[+2(3.97e-05)]_20_[+2(3.97e-05)]_\ 35 chr5:139487287-139487367 8.26e-01 80 chr1:228352376-228352456 1.80e-02 80 chr17:74449338-74449418 2.14e-01 80 chr20:60718381-60718461 7.49e-01 80 chr19:36294587-36294667 1.24e-03 17_[+1(9.21e-06)]_55 chr10:23727977-23728057 6.90e-01 80 chr6:134906762-134906842 2.93e-01 80 chr19:860662-860742 3.19e-01 80 chr1:27286877-27286957 8.53e-01 80 chr22:21161879-21161959 3.28e-04 35_[+3(8.23e-05)]_37 chr5:149522593-149522673 3.16e-01 80 chr4:2757822-2757902 8.76e-01 80 chr10:50374161-50374241 4.03e-01 80 chr19:1354761-1354841 1.23e-01 80 chr6:33480131-33480211 3.67e-02 40_[+1(7.25e-05)]_32 chr4:160024007-160024087 9.64e-01 80 chr1:184775577-184775657 1.94e-01 80 chr16:81515093-81515173 1.21e-02 17_[+2(3.97e-05)]_55 chr13:107188067-10718814 5.15e-01 80 chr7:6629832-6629912 7.97e-01 80 chr1:59509554-59509634 2.58e-02 80 chr19:480448-480528 5.49e-01 80 chr22:20255926-20256006 5.57e-02 80 chr2:12633403-12633483 4.69e-03 70_[+5(1.20e-05)]_2 chr1:8086401-8086481 5.14e-01 80 chr19:14247465-14247545 7.45e-01 80 chr22:38003240-38003320 5.00e-01 80 chr3:186285062-186285142 1.73e-01 80 chr8:48173469-48173549 7.79e-01 80 chr16:2033855-2033935 6.17e-01 80 chr11:36137161-36137241 2.67e-04 16_[+1(4.37e-05)]_45_[+3(8.23e-05)]_\ 3 chr7:38375319-38375399 3.05e-01 80 chr17:46578494-46578574 8.08e-04 11_[+1(5.57e-05)]_48_[+3(7.48e-05)]_\ 5 chr19:52299565-52299645 6.39e-01 80 chr4:129375609-129375689 2.50e-03 80 chr19:962374-962454 6.88e-04 72_[+4(6.26e-05)] chr6:15555617-15555697 3.13e-02 50_[+1(5.57e-05)]_22 chr8:103820856-103820936 3.71e-05 72_[+4(6.26e-05)] chr15:74726132-74726212 4.15e-01 80 chr6:28047856-28047936 2.76e-01 80 chr7:75536526-75536606 1.18e-03 2_[+1(4.37e-05)]_70 chr1:33221507-33221587 3.69e-01 80 chr22:20004479-20004559 6.39e-01 80 chr7:30186057-30186137 9.26e-02 80 chr3:45133889-45133969 2.92e-03 59_[+5(1.20e-05)]_13 chr5:75471765-75471845 3.78e-04 5_[+3(1.21e-05)]_67 chr19:39522491-39522571 9.08e-01 80 chrX:102488288-102488368 4.40e-03 27_[+2(7.95e-05)]_45 chr10:75532656-75532736 6.70e-01 80 chr7:140188213-140188293 2.86e-01 80 chr9:131451313-131451393 1.24e-01 34_[+4(6.26e-05)]_38 chr8:96241215-96241295 7.68e-01 80 chr19:14202187-14202267 6.66e-01 80 chr15:63688020-63688100 6.59e-01 80 chr3:37011562-37011642 4.67e-03 80 chr1:33827346-33827426 1.20e-02 34_[+2(3.97e-05)]_38 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************