********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/COPS2.fasta
CONTROL SEQUENCES= --none--
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
chr17:36301785-36301865  1.0000     80  chr2:145440315-145440395 1.0000     80  
chr7:117845791-117845871 1.0000     80  chr21:11111241-11111321  1.0000     80  
chr10:74144248-74144328  1.0000     80  chr6:33037149-33037229   1.0000     80  
chr7:131053866-131053946 1.0000     80  chr4:190655937-190656017 1.0000     80  
chr7:117807305-117807385 1.0000     80  chr6:138257368-138257448 1.0000     80  
chr13:92276568-92276648  1.0000     80  chr6:38691447-38691527   1.0000     80  
chr2:91766349-91766429   1.0000     80  chr21:11073622-11073702  1.0000     80  
chr2:91790989-91791069   1.0000     80  chr21:11146225-11146305  1.0000     80  
chr13:91557567-91557647  1.0000     80  chr2:152252300-152252380 1.0000     80  
chr6:150128989-150129069 1.0000     80  chr7:110962323-110962403 1.0000     80  
chr20:29649593-29649673  1.0000     80  chr9:66484483-66484563   1.0000     80  
chr21:11093201-11093281  1.0000     80  chr6:158281868-158281948 1.0000     80  
chr6:6657829-6657909     1.0000     80  chr6:57535512-57535592   1.0000     80  
chr21:11057701-11057781  1.0000     80  chr7:133230691-133230771 1.0000     80  
chr2:69787251-69787331   1.0000     80  chr20:43485664-43485744  1.0000     80  
chr9:66461460-66461540   1.0000     80  chr5:43313793-43313873   1.0000     80  
chr1:228045134-228045214 1.0000     80  chr21:11042077-11042157  1.0000     80  
chr21:11171847-11171927  1.0000     80  chr4:166248651-166248731 1.0000     80  
chr22:42228918-42228998  1.0000     80  chr6:158739474-158739554 1.0000     80  
chr7:98684344-98684424   1.0000     80  chr5:74632811-74632891   1.0000     80  
chr2:91783936-91784016   1.0000     80  chr2:177319680-177319760 1.0000     80  
chr12:108511298-10851137 1.0000     80  chr10:102133170-10213325 1.0000     80  
chr16:70946472-70946552  1.0000     80  chr2:91786025-91786105   1.0000     80  
chr10:61705906-61705986  1.0000     80  chr20:49149119-49149199  1.0000     80  
chr17:36981584-36981664  1.0000     80  chr21:11057088-11057168  1.0000     80  
chr17:36305093-36305173  1.0000     80  chr21:11118676-11118756  1.0000     80  
chr4:120375774-120375854 1.0000     80  chr1:145104329-145104409 1.0000     80  
chr21:11112650-11112730  1.0000     80  chr6:57394362-57394442   1.0000     80  
chr21:11048847-11048927  1.0000     80  chr1:234290832-234290912 1.0000     80  
chr5:40829488-40829568   1.0000     80  chr6:32177057-32177137   1.0000     80  
chr2:203829848-203829928 1.0000     80  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_COPS2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/COPS2.fasta 

model:  mod=         zoops    nmotifs=         5    evt=           inf
objective function:           em=       E-value of product of p-values
                              starts=   E-value of product of p-values
strands: +
width:  minw=            8    maxw=            8
nsites: minsites=        2    maxsites=       61    wnsites=       0.8
theta:  spmap=         uni    spfuzz=        0.5
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
trim:   wg=             11    ws=              1    endgaps=       yes
data:   n=            4880    N=              61
sample: seed=            0    hsfrac=          0
        searchsize=   4880    norand=         no    csites=       1000
Letter frequencies in dataset:
A 0.281 C 0.208 G 0.21 T 0.301 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.281 C 0.208 G 0.21 T 0.301 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF GAKCMAAW MEME-1	width =   8  sites =  19  llr = 146  E-value = 4.9e+001
********************************************************************************
--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  3a::5aa3
pos.-specific     C  :::95::2
probability       G  7:41::::
matrix            T  ::6::::5

         bits    2.3         
                 2.0    *    
                 1.8  * * ** 
                 1.6  * * ** 
Relative         1.4  * * ** 
Entropy          1.1 ** **** 
(11.1 bits)      0.9 ******* 
                 0.7 ******* 
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           GATCAAAT
consensus            A G C  A
sequence                    C
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chr1:228045134-228045214     44  1.83e-05 ctcattgcaa gatccaat cagatcatgc
chr20:43485664-43485744      22  1.83e-05 GTgaatgcag gatccaat cagactgtgc
chr6:6657829-6657909         33  1.83e-05 ctcattgcaa gatccaat cagatcatgc
chr6:150128989-150129069      8  1.83e-05    GCTAAGG GATCCAAT TGATCCCGTG
chr21:11118676-11118756      15  5.57e-05 AGTCTTTGCT GATCAAAT TCAGGGGAAG
chr10:102133170-10213325     51  5.57e-05 GACCACGCCG GAGCCAAT CAGCGGCCCC
chr4:166248651-166248731     28  5.57e-05 TCCATCCGCG GAGCCAAT GGCTGGGACC
chr20:29649593-29649673      26  5.57e-05 ggaattactg gatcaaat gatagatctg
chr21:11093201-11093281      13  1.03e-04 CCATAGAAAT GATCCAAA CTCACATACT
chr2:152252300-152252380     42  1.03e-04 tgggaggcat gatccaac tggatactgc
chr5:43313793-43313873       43  1.63e-04 GATACGGCGA GAGCCAAC GGGAGCGGAG
chr2:69787251-69787331       20  1.63e-04 TAAATCACGA GATCAAAA TCCACGCCTA
chr6:57394362-57394442       47  2.89e-04 CCCCATTCAC AAGCAAAT GTGAATTTGG
chr2:177319680-177319760     72  4.10e-04 GGGTTAGAGA AATCAAAA T         
chr17:36301785-36301865      70  4.10e-04 atggaaatag aatcaaac aat       
chr13:91557567-91557647      11  4.47e-04 aaaatacatg aagcaaaa actaataaaa
chr21:11146225-11146305       2  4.47e-04          A AAGCAAAC TATCATCATT
chr21:11073622-11073702      29  4.47e-04 ttaacaattg aagcaaaa attgttacat
chr21:11048847-11048927      33  5.04e-04 ATGACCAAGA GATGAAAT ACAATAGGAA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chr1:228045134-228045214          1.8e-05  43_[+1]_29
chr20:43485664-43485744           1.8e-05  21_[+1]_51
chr6:6657829-6657909              1.8e-05  32_[+1]_40
chr6:150128989-150129069          1.8e-05  7_[+1]_65
chr21:11118676-11118756           5.6e-05  14_[+1]_58
chr10:102133170-10213325          5.6e-05  50_[+1]_22
chr4:166248651-166248731          5.6e-05  27_[+1]_45
chr20:29649593-29649673           5.6e-05  25_[+1]_47
chr21:11093201-11093281            0.0001  12_[+1]_60
chr2:152252300-152252380           0.0001  41_[+1]_31
chr5:43313793-43313873            0.00016  42_[+1]_30
chr2:69787251-69787331            0.00016  19_[+1]_53
chr6:57394362-57394442            0.00029  46_[+1]_26
chr2:177319680-177319760          0.00041  71_[+1]_1
chr17:36301785-36301865           0.00041  69_[+1]_3
chr13:91557567-91557647           0.00045  10_[+1]_62
chr21:11146225-11146305           0.00045  1_[+1]_71
chr21:11073622-11073702           0.00045  28_[+1]_44
chr21:11048847-11048927            0.0005  32_[+1]_40
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF GAKCMAAW width=8 seqs=19
chr1:228045134-228045214 (   44) GATCCAAT  1 
chr20:43485664-43485744  (   22) GATCCAAT  1 
chr6:6657829-6657909     (   33) GATCCAAT  1 
chr6:150128989-150129069 (    8) GATCCAAT  1 
chr21:11118676-11118756  (   15) GATCAAAT  1 
chr10:102133170-10213325 (   51) GAGCCAAT  1 
chr4:166248651-166248731 (   28) GAGCCAAT  1 
chr20:29649593-29649673  (   26) GATCAAAT  1 
chr21:11093201-11093281  (   13) GATCCAAA  1 
chr2:152252300-152252380 (   42) GATCCAAC  1 
chr5:43313793-43313873   (   43) GAGCCAAC  1 
chr2:69787251-69787331   (   20) GATCAAAA  1 
chr6:57394362-57394442   (   47) AAGCAAAT  1 
chr2:177319680-177319760 (   72) AATCAAAA  1 
chr17:36301785-36301865  (   70) AATCAAAC  1 
chr13:91557567-91557647  (   11) AAGCAAAA  1 
chr21:11146225-11146305  (    2) AAGCAAAC  1 
chr21:11073622-11073702  (   29) AAGCAAAA  1 
chr21:11048847-11048927  (   33) GATGAAAT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 4453 bayes= 8.76676 E= 4.9e+001 
    17  -1089    170  -1089 
   183  -1089  -1089  -1089 
 -1089  -1089     81    107 
 -1089    219   -200  -1089 
    91    119  -1089  -1089 
   183  -1089  -1089  -1089 
   183  -1089  -1089  -1089 
    -9      2  -1089     81 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.9e+001 
 0.315789  0.000000  0.684211  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.368421  0.631579 
 0.000000  0.947368  0.052632  0.000000 
 0.526316  0.473684  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.263158  0.210526  0.000000  0.526316 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GAKCMAAW MEME-1 regular expression
--------------------------------------------------------------------------------
[GA]A[TG]C[AC]AA[TAC]
--------------------------------------------------------------------------------




Time  2.28 secs.

********************************************************************************


********************************************************************************
MOTIF TCACCCCA MEME-2	width =   8  sites =   9  llr = 84  E-value = 8.2e+001
********************************************************************************
--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  1:a:2::a
pos.-specific     C  :8:a79a:
probability       G  :2::::::
matrix            T  9:::11::

         bits    2.3    *  * 
                 2.0    *  * 
                 1.8   ** ***
                 1.6  *** ***
Relative         1.4  *** ***
Entropy          1.1 **** ***
(13.5 bits)      0.9 ********
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           TCACCCCA
consensus             G  A   
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chr22:42228918-42228998      58  9.25e-06 TGACGCGCCA TCACCCCA CGCACCGCTT
chr20:43485664-43485744      47  9.25e-06 tgctctggca tcacccca tgacaggatc
chr7:110962323-110962403     53  1.86e-05 GAGGTCGAAT TGACCCCA TGACTGGTTA
chr2:152252300-152252380     67  1.86e-05 tgctatgggg tgacccca gggctc    
chr4:190655937-190656017     52  3.11e-05 ctcttctctc tcacacca ttgcaccacc
chr6:33037149-33037229       58  3.11e-05 GAGAGGGGTA TCACACCA CTGACCAGCC
chr5:40829488-40829568       40  3.97e-05 TACCAACCCT ACACCCCA TCCTTCTAAC
chr4:166248651-166248731     14  5.31e-05 CTCACTATCC TCACTCCA TCCGCGGAGC
chr1:228045134-228045214     30  6.65e-05 cctctcaaca tcacctca ttgcaagatc
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chr22:42228918-42228998           9.3e-06  57_[+2]_15
chr20:43485664-43485744           9.3e-06  46_[+2]_26
chr7:110962323-110962403          1.9e-05  52_[+2]_20
chr2:152252300-152252380          1.9e-05  66_[+2]_6
chr4:190655937-190656017          3.1e-05  51_[+2]_21
chr6:33037149-33037229            3.1e-05  57_[+2]_15
chr5:40829488-40829568              4e-05  39_[+2]_33
chr4:166248651-166248731          5.3e-05  13_[+2]_59
chr1:228045134-228045214          6.7e-05  29_[+2]_43
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF TCACCCCA width=8 seqs=9
chr22:42228918-42228998  (   58) TCACCCCA  1 
chr20:43485664-43485744  (   47) TCACCCCA  1 
chr7:110962323-110962403 (   53) TGACCCCA  1 
chr2:152252300-152252380 (   67) TGACCCCA  1 
chr4:190655937-190656017 (   52) TCACACCA  1 
chr6:33037149-33037229   (   58) TCACACCA  1 
chr5:40829488-40829568   (   40) ACACCCCA  1 
chr4:166248651-166248731 (   14) TCACTCCA  1 
chr1:228045134-228045214 (   30) TCACCTCA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 4453 bayes= 9.79701 E= 8.2e+001 
  -133   -982   -982    156 
  -982    190      8   -982 
   183   -982   -982   -982 
  -982    226   -982   -982 
   -34    168   -982   -143 
  -982    209   -982   -143 
  -982    226   -982   -982 
   183   -982   -982   -982 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 8.2e+001 
 0.111111  0.000000  0.000000  0.888889 
 0.000000  0.777778  0.222222  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.222222  0.666667  0.000000  0.111111 
 0.000000  0.888889  0.000000  0.111111 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCACCCCA MEME-2 regular expression
--------------------------------------------------------------------------------
T[CG]AC[CA]CCA
--------------------------------------------------------------------------------




Time  4.01 secs.

********************************************************************************


********************************************************************************
MOTIF CCACGCCT MEME-3	width =   8  sites =   2  llr = 24  E-value = 3.1e+003
********************************************************************************
--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 Description
--------------------------------------------------------------------------------
Simplified        A  ::a:::::
pos.-specific     C  aa:a:aa:
probability       G  ::::a:::
matrix            T  :::::::a

         bits    2.3 ** **** 
                 2.0 ** **** 
                 1.8 ********
                 1.6 ********
Relative         1.4 ********
Entropy          1.1 ********
(17.1 bits)      0.9 ********
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           CCACGCCT
consensus                    
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chr4:120375774-120375854      2  6.92e-06          C CCACGCCT CTGACGTCGC
chr2:69787251-69787331       29  6.92e-06 AGATCAAAAT CCACGCCT AACAGGACTT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chr4:120375774-120375854          6.9e-06  1_[+3]_71
chr2:69787251-69787331            6.9e-06  28_[+3]_44
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF CCACGCCT width=8 seqs=2
chr4:120375774-120375854 (    2) CCACGCCT  1 
chr2:69787251-69787331   (   29) CCACGCCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 4453 bayes= 11.1199 E= 3.1e+003 
  -765    226   -765   -765 
  -765    226   -765   -765 
   183   -765   -765   -765 
  -765    226   -765   -765 
  -765   -765    224   -765 
  -765    226   -765   -765 
  -765    226   -765   -765 
  -765   -765   -765    173 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.1e+003 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCACGCCT MEME-3 regular expression
--------------------------------------------------------------------------------
CCACGCCT
--------------------------------------------------------------------------------




Time  4.70 secs.

********************************************************************************


********************************************************************************
MOTIF TCAWRGAA MEME-4	width =   8  sites =  11  llr = 95  E-value = 3.7e+003
********************************************************************************
--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 Description
--------------------------------------------------------------------------------
Simplified        A  ::755:aa
pos.-specific     C  :a32::::
probability       G  ::::5a::
matrix            T  a::4::::

         bits    2.3  *   *  
                 2.0  *   *  
                 1.8 **   ***
                 1.6 **   ***
Relative         1.4 **   ***
Entropy          1.1 *** ****
(12.5 bits)      0.9 *** ****
                 0.7 *** ****
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           TCAAGGAA
consensus              CTA   
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chr13:91557567-91557647      30  1.72e-05 ctaataaaac tcaaggaa aactgaaata
chr6:32177057-32177137       28  3.57e-05 aaagttagtc tcatggaa gtagggtaga
chr17:36301785-36301865      58  3.57e-05 tctagacact tcatggaa atagaatcaa
chr13:92276568-92276648      30  5.87e-05 tacctacttt tcaaagaa aatatagtat
chr7:117845791-117845871     35  5.87e-05 GTAATAATTA TCaaagaa aaagaagaga
chr4:120375774-120375854     66  7.14e-05 CATTGTGACG TCACGGAA GGCGCGC   
chr10:61705906-61705986      44  8.42e-05 gaatgtgaat tccaggaa acaagtgcaa
chr16:70946472-70946552      72  1.09e-04 gatgctggct tcatagaa t         
chr21:11111241-11111321      17  1.22e-04 CCCACCTGTG TCCTGGAA GTGCTCAGAG
chr21:11048847-11048927       3  1.40e-04         AA TCACAGAA AAGACTGGAG
chr21:11057701-11057781       5  1.57e-04       AATT TCCAAGAA TTTCAGAAGT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chr13:91557567-91557647           1.7e-05  29_[+4]_43
chr6:32177057-32177137            3.6e-05  27_[+4]_45
chr17:36301785-36301865           3.6e-05  57_[+4]_15
chr13:92276568-92276648           5.9e-05  29_[+4]_43
chr7:117845791-117845871          5.9e-05  34_[+4]_38
chr4:120375774-120375854          7.1e-05  65_[+4]_7
chr10:61705906-61705986           8.4e-05  43_[+4]_29
chr16:70946472-70946552           0.00011  71_[+4]_1
chr21:11111241-11111321           0.00012  16_[+4]_56
chr21:11048847-11048927           0.00014  2_[+4]_70
chr21:11057701-11057781           0.00016  4_[+4]_68
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF TCAWRGAA width=8 seqs=11
chr13:91557567-91557647  (   30) TCAAGGAA  1 
chr6:32177057-32177137   (   28) TCATGGAA  1 
chr17:36301785-36301865  (   58) TCATGGAA  1 
chr13:92276568-92276648  (   30) TCAAAGAA  1 
chr7:117845791-117845871 (   35) TCAAAGAA  1 
chr4:120375774-120375854 (   66) TCACGGAA  1 
chr10:61705906-61705986  (   44) TCCAGGAA  1 
chr16:70946472-70946552  (   72) TCATAGAA  1 
chr21:11111241-11111321  (   17) TCCTGGAA  1 
chr21:11048847-11048927  (    3) TCACAGAA  1 
chr21:11057701-11057781  (    5) TCCAAGAA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 4453 bayes= 8.2088 E= 3.7e+003 
 -1010  -1010  -1010    173 
 -1010    226  -1010  -1010 
   137     39  -1010  -1010 
    69    -19  -1010     27 
    69  -1010    137  -1010 
 -1010  -1010    225  -1010 
   183  -1010  -1010  -1010 
   183  -1010  -1010  -1010 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.7e+003 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.727273  0.272727  0.000000  0.000000 
 0.454545  0.181818  0.000000  0.363636 
 0.454545  0.000000  0.545455  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCAWRGAA MEME-4 regular expression
--------------------------------------------------------------------------------
TC[AC][AT][GA]GAA
--------------------------------------------------------------------------------




Time  5.30 secs.

********************************************************************************


********************************************************************************
MOTIF GCWGCTCT MEME-5	width =   8  sites =   4  llr = 43  E-value = 5.6e+003
********************************************************************************
--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 Description
--------------------------------------------------------------------------------
Simplified        A  ::5:::::
pos.-specific     C  :a::a:a:
probability       G  a::a::::
matrix            T  ::5::a:a

         bits    2.3 ** ** * 
                 2.0 ** ** * 
                 1.8 ** *****
                 1.6 ** *****
Relative         1.4 ** *****
Entropy          1.1 ** *****
(15.5 bits)      0.9 ** *****
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           GCAGCTCT
consensus              T     
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chr20:43485664-43485744       1  1.01e-05          . GCAGCTCT GAGGTgaatg
chr6:33037149-33037229       32  1.01e-05 AGATTTTATG GCAGCTCT GAATCACAGA
chr5:40829488-40829568        5  2.09e-05       GATC GCTGCTCT TCCCTGAATT
chr21:11042077-11042157      16  2.09e-05 gaataaatgt gctgctct acaacccaga
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chr20:43485664-43485744             1e-05  [+5]_72
chr6:33037149-33037229              1e-05  31_[+5]_41
chr5:40829488-40829568            2.1e-05  4_[+5]_68
chr21:11042077-11042157           2.1e-05  15_[+5]_57
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF GCWGCTCT width=8 seqs=4
chr20:43485664-43485744  (    1) GCAGCTCT  1 
chr6:33037149-33037229   (   32) GCAGCTCT  1 
chr5:40829488-40829568   (    5) GCTGCTCT  1 
chr21:11042077-11042157  (   16) GCTGCTCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 4453 bayes= 10.1193 E= 5.6e+003 
  -865   -865    225   -865 
  -865    226   -865   -865 
    83   -865   -865     73 
  -865   -865    225   -865 
  -865    226   -865   -865 
  -865   -865   -865    173 
  -865    226   -865   -865 
  -865   -865   -865    173 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.6e+003 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.500000  0.000000  0.000000  0.500000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCWGCTCT MEME-5 regular expression
--------------------------------------------------------------------------------
GC[AT]GCTCT
--------------------------------------------------------------------------------




Time  5.90 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chr17:36301785-36301865          2.69e-03  57_[+4(3.57e-05)]_15
chr2:145440315-145440395         7.06e-01  80
chr7:117845791-117845871         1.84e-01  34_[+4(5.87e-05)]_38
chr21:11111241-11111321          3.44e-03  80
chr10:74144248-74144328          4.99e-01  80
chr6:33037149-33037229           3.48e-04  31_[+5(1.01e-05)]_18_[+2(3.11e-05)]_\
    15
chr7:131053866-131053946         8.50e-01  80
chr4:190655937-190656017         1.00e-02  51_[+2(3.11e-05)]_21
chr7:117807305-117807385         8.00e-01  80
chr6:138257368-138257448         7.57e-01  80
chr13:92276568-92276648          6.07e-02  29_[+4(5.87e-05)]_43
chr6:38691447-38691527           7.70e-01  80
chr2:91766349-91766429           9.72e-01  80
chr21:11073622-11073702          6.00e-01  80
chr2:91790989-91791069           9.78e-01  80
chr21:11146225-11146305          1.90e-01  80
chr13:91557567-91557647          2.44e-02  29_[+4(1.72e-05)]_43
chr2:152252300-152252380         7.65e-04  66_[+2(1.86e-05)]_6
chr6:150128989-150129069         1.13e-01  7_[+1(1.83e-05)]_65
chr7:110962323-110962403         2.41e-02  52_[+2(1.86e-05)]_20
chr20:29649593-29649673          1.13e-01  25_[+1(5.57e-05)]_47
chr9:66484483-66484563           1.76e-01  80
chr21:11093201-11093281          8.99e-02  80
chr6:158281868-158281948         7.95e-01  80
chr6:6657829-6657909             4.50e-04  18_[+2(6.65e-05)]_6_[+1(1.83e-05)]_\
    19_[+2(6.65e-05)]_13
chr6:57535512-57535592           9.90e-01  80
chr21:11057701-11057781          1.95e-01  80
chr7:133230691-133230771         8.21e-01  80
chr2:69787251-69787331           3.64e-03  28_[+3(6.92e-06)]_44
chr20:43485664-43485744          2.46e-06  [+5(1.01e-05)]_13_[+1(1.83e-05)]_17_\
    [+2(9.25e-06)]_26
chr9:66461460-66461540           6.29e-01  80
chr5:43313793-43313873           1.29e-01  80
chr1:228045134-228045214         6.34e-05  2_[+1(1.83e-05)]_19_[+2(6.65e-05)]_\
    6_[+1(1.83e-05)]_29
chr21:11042077-11042157          1.34e-03  15_[+5(2.09e-05)]_57
chr21:11171847-11171927          8.63e-01  80
chr4:166248651-166248731         1.24e-03  13_[+2(5.31e-05)]_6_[+1(5.57e-05)]_\
    45
chr22:42228918-42228998          2.17e-03  57_[+2(9.25e-06)]_15
chr6:158739474-158739554         2.45e-01  80
chr7:98684344-98684424           4.99e-01  80
chr5:74632811-74632891           7.89e-01  80
chr2:91783936-91784016           5.86e-01  80
chr2:177319680-177319760         1.51e-01  80
chr12:108511298-10851137         5.84e-01  80
chr10:102133170-10213325         5.53e-04  42_[+3(2.30e-05)]_[+1(5.57e-05)]_22
chr16:70946472-70946552          9.86e-02  80
chr2:91786025-91786105           4.07e-01  80
chr10:61705906-61705986          2.80e-01  43_[+4(8.42e-05)]_29
chr20:49149119-49149199          4.59e-01  80
chr17:36981584-36981664          1.44e-01  80
chr21:11057088-11057168          9.91e-01  80
chr17:36305093-36305173          6.80e-01  80
chr21:11118676-11118756          4.62e-02  14_[+1(5.57e-05)]_58
chr4:120375774-120375854         3.08e-04  1_[+3(6.92e-06)]_56_[+4(7.14e-05)]_\
    7
chr1:145104329-145104409         1.84e-02  12_[+5(8.29e-05)]_60
chr21:11112650-11112730          5.34e-01  80
chr6:57394362-57394442           1.92e-01  80
chr21:11048847-11048927          5.54e-02  80
chr1:234290832-234290912         7.97e-01  80
chr5:40829488-40829568           3.70e-04  4_[+5(2.09e-05)]_27_[+2(3.97e-05)]_\
    33
chr6:32177057-32177137           8.49e-02  27_[+4(3.57e-05)]_45
chr2:203829848-203829928         9.01e-01  80
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (5) found.
********************************************************************************

CPU: c17n09.farnam.hpc.yale.internal

********************************************************************************