******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/CCAR2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:17977603-17977683 1.0000 80 chr3:132063805-132063885 1.0000 80 chr3:132075577-132075657 1.0000 80 chr6:38652187-38652267 1.0000 80 chr3:132071577-132071657 1.0000 80 chr3:132056307-132056387 1.0000 80 chr3:132051083-132051163 1.0000 80 chr17:39041110-39041190 1.0000 80 chr17:39034452-39034532 1.0000 80 chr6:38654663-38654743 1.0000 80 chr3:132061387-132061467 1.0000 80 chr6:38645083-38645163 1.0000 80 chr2:89219325-89219405 1.0000 80 chr3:132068767-132068847 1.0000 80 chr6:38649783-38649863 1.0000 80 chr22:21213879-21213959 1.0000 80 chr16:88982394-88982474 1.0000 80 chr18:75696811-75696891 1.0000 80 chr17:39038826-39038906 1.0000 80 chr18:75696271-75696351 1.0000 80 chr6:26323417-26323497 1.0000 80 chr1:1415119-1415199 1.0000 80 chr6:68594006-68594086 1.0000 80 chr17:56405379-56405459 1.0000 80 chr1:150528252-150528332 1.0000 80 chr3:132047124-132047204 1.0000 80 chr21:44254164-44254244 1.0000 80 chr16:57716785-57716865 1.0000 80 chr1:46713983-46714063 1.0000 80 chr22:23013121-23013201 1.0000 80 chr22:19418326-19418406 1.0000 80 chr19:17008205-17008285 1.0000 80 chr21:44260516-44260596 1.0000 80 chr10:3828275-3828355 1.0000 80 chr22:23047180-23047260 1.0000 80 chr22:23258994-23259074 1.0000 80 chr6:119558593-119558673 1.0000 80 chr22:22936426-22936506 1.0000 80 chr22:22347507-22347587 1.0000 80 chr17:56406937-56407017 1.0000 80 chr1:65888260-65888340 1.0000 80 chr6:27300547-27300627 1.0000 80 chr2:133015216-133015296 1.0000 80 chr22:21965645-21965725 1.0000 80 chr22:21299980-21300060 1.0000 80 chr22:21221881-21221961 1.0000 80 chr9:136130026-136130106 1.0000 80 chr22:21261317-21261397 1.0000 80 chr19:47616465-47616545 1.0000 80 chr6:38650576-38650656 1.0000 80 chr22:20925920-20926000 1.0000 80 chr3:132050508-132050588 1.0000 80 chr1:43402845-43402925 1.0000 80 chr22:22067447-22067527 1.0000 80 chr22:22918920-22919000 1.0000 80 chr22:20863785-20863865 1.0000 80 chr16:85335967-85336047 1.0000 80 chr8:82754688-82754768 1.0000 80 chr19:49466861-49466941 1.0000 80 chr1:149223519-149223599 1.0000 80 chr19:55538979-55539059 1.0000 80 chr22:20871509-20871589 1.0000 80 chrX:136520411-136520491 1.0000 80 chrX:153168711-153168791 1.0000 80 chr7:129425012-129425092 1.0000 80 chr1:26648233-26648313 1.0000 80 chr22:21130621-21130701 1.0000 80 chr22:23030266-23030346 1.0000 80 chr17:56405581-56405661 1.0000 80 chr22:21923935-21924015 1.0000 80 chr22:21271243-21271323 1.0000 80 chr6:26571865-26571945 1.0000 80 chr22:23032596-23032676 1.0000 80 chr1:211849391-211849471 1.0000 80 chr22:20071256-20071336 1.0000 80 chr22:23249193-23249273 1.0000 80 chr16:85417091-85417171 1.0000 80 chr3:13040962-13041042 1.0000 80 chr22:21452615-21452695 1.0000 80 chr2:91815098-91815178 1.0000 80 chr7:98740585-98740665 1.0000 80 chr17:41400519-41400599 1.0000 80 chr22:21953656-21953736 1.0000 80 chr6:38670749-38670829 1.0000 80 chr16:14580658-14580738 1.0000 80 chr22:20861491-20861571 1.0000 80 chr22:23427424-23427504 1.0000 80 chr17:41150190-41150270 1.0000 80 chr17:27055447-27055527 1.0000 80 chr2:74682035-74682115 1.0000 80 chr3:195424894-195424974 1.0000 80 chr6:157704500-157704580 1.0000 80 chr22:19513183-19513263 1.0000 80 chr6:31621394-31621474 1.0000 80 chr22:21369182-21369262 1.0000 80 chr6:32940058-32940138 1.0000 80 chr16:88948623-88948703 1.0000 80 chr22:23252971-23253051 1.0000 80 chr1:116951992-116952072 1.0000 80 chr7:65564736-65564816 1.0000 80 chr2:97304092-97304172 1.0000 80 chr22:22146050-22146130 1.0000 80 chr1:167597395-167597475 1.0000 80 chr11:47198955-47199035 1.0000 80 chr18:33077911-33077991 1.0000 80 chr20:49546026-49546106 1.0000 80 chr19:46911160-46911240 1.0000 80 chr5:108063285-108063365 1.0000 80 chr16:30887912-30887992 1.0000 80 chr3:4951054-4951134 1.0000 80 chr6:31790170-31790250 1.0000 80 chr21:44260764-44260844 1.0000 80 chr1:144534137-144534217 1.0000 80 chr1:155214594-155214674 1.0000 80 chr5:43065069-43065149 1.0000 80 chr11:64863523-64863603 1.0000 80 chr6:27618566-27618646 1.0000 80 chr16:85569091-85569171 1.0000 80 chr21:34144261-34144341 1.0000 80 chr2:3622721-3622801 1.0000 80 chr22:23275770-23275850 1.0000 80 chr16:85604486-85604566 1.0000 80 chr22:21392960-21393040 1.0000 80 chr22:22428916-22428996 1.0000 80 chr7:104652996-104653076 1.0000 80 chr1:201865096-201865176 1.0000 80 chr7:116189039-116189119 1.0000 80 chr6:41904159-41904239 1.0000 80 chr11:65657735-65657815 1.0000 80 chr21:33105296-33105376 1.0000 80 chr1:205180879-205180959 1.0000 80 chr22:21234620-21234700 1.0000 80 chr6:28104601-28104681 1.0000 80 chr1:205091408-205091488 1.0000 80 chr7:156635672-156635752 1.0000 80 chr22:22555559-22555639 1.0000 80 chr1:222763411-222763491 1.0000 80 chr5:134469890-134469970 1.0000 80 chr16:70462284-70462364 1.0000 80 chr16:79804162-79804242 1.0000 80 chr11:118958747-11895882 1.0000 80 chr6:31737616-31737696 1.0000 80 chr1:147736385-147736465 1.0000 80 chr19:55727935-55728015 1.0000 80 chr11:46016087-46016167 1.0000 80 chr21:43472105-43472185 1.0000 80 chr16:84710189-84710269 1.0000 80 chr17:72199654-72199734 1.0000 80 chr12:50263011-50263091 1.0000 80 chr7:102632434-102632514 1.0000 80 chr17:62223251-62223331 1.0000 80 chr1:16395659-16395739 1.0000 80 chr1:26796962-26797042 1.0000 80 chr1:181122284-181122364 1.0000 80 chr22:20072301-20072381 1.0000 80 chr22:20918684-20918764 1.0000 80 chr11:62359129-62359209 1.0000 80 chr20:35724556-35724636 1.0000 80 chr10:16934140-16934220 1.0000 80 chr16:57333660-57333740 1.0000 80 chr6:33247978-33248058 1.0000 80 chr1:203830582-203830662 1.0000 80 chr22:21396197-21396277 1.0000 80 chr1:28499196-28499276 1.0000 80 chr1:231337871-231337951 1.0000 80 chr1:145588603-145588683 1.0000 80 chr1:43988577-43988657 1.0000 80 chr11:57226239-57226319 1.0000 80 chr22:23091872-23091952 1.0000 80 chr6:3024040-3024120 1.0000 80 chr11:65342911-65342991 1.0000 80 chr2:24299277-24299357 1.0000 80 chr14:103844566-10384464 1.0000 80 chr7:141438020-141438100 1.0000 80 chr7:116516908-116516988 1.0000 80 chr20:49095001-49095081 1.0000 80 chr11:47600504-47600584 1.0000 80 chr12:56367450-56367530 1.0000 80 chr2:152266220-152266300 1.0000 80 chr2:183989510-183989590 1.0000 80 chr1:229690834-229690914 1.0000 80 chrX:153168463-153168543 1.0000 80 chr2:179279575-179279655 1.0000 80 chr22:19629094-19629174 1.0000 80 chr22:21922837-21922917 1.0000 80 chr1:207197866-207197946 1.0000 80 chr10:50508596-50508676 1.0000 80 chr22:22441479-22441559 1.0000 80 chr22:21272744-21272824 1.0000 80 chr1:93297207-93297287 1.0000 80 chr7:140714773-140714853 1.0000 80 chr4:106629846-106629926 1.0000 80 chr22:23266925-23267005 1.0000 80 chr13:52496159-52496239 1.0000 80 chr11:65769651-65769731 1.0000 80 chr17:61920084-61920164 1.0000 80 chr22:22724157-22724237 1.0000 80 chr22:22089059-22089139 1.0000 80 chr1:149223718-149223798 1.0000 80 chr22:21222140-21222220 1.0000 80 chr1:224691345-224691425 1.0000 80 chr15:75246995-75247075 1.0000 80 chr17:27192456-27192536 1.0000 80 chrX:119379089-119379169 1.0000 80 chr15:44580539-44580619 1.0000 80 chr19:56637329-56637409 1.0000 80 chr7:157197800-157197880 1.0000 80 chr11:3846091-3846171 1.0000 80 chr11:65835817-65835897 1.0000 80 chr2:91786915-91786995 1.0000 80 chr1:228701032-228701112 1.0000 80 chr1:38455738-38455818 1.0000 80 chr17:40851290-40851370 1.0000 80 chr22:43011484-43011564 1.0000 80 chr17:74402193-74402273 1.0000 80 chr22:21194544-21194624 1.0000 80 chr10:52070720-52070800 1.0000 80 chr17:57697119-57697199 1.0000 80 chr7:123387716-123387796 1.0000 80 chr1:203651979-203652059 1.0000 80 chr19:2950094-2950174 1.0000 80 chr15:45341381-45341461 1.0000 80 chr3:14274309-14274389 1.0000 80 chr1:156475096-156475176 1.0000 80 chr3:5028201-5028281 1.0000 80 chr22:20013073-20013153 1.0000 80 chr8:124169369-124169449 1.0000 80 chr1:26705052-26705132 1.0000 80 chr6:35700085-35700165 1.0000 80 chr15:23810715-23810795 1.0000 80 chr22:19358488-19358568 1.0000 80 chr1:145058072-145058152 1.0000 80 chr7:129598580-129598660 1.0000 80 chr19:3184281-3184361 1.0000 80 chr22:20850869-20850949 1.0000 80 chr7:128500688-128500768 1.0000 80 chr6:31706034-31706114 1.0000 80 chr5:10703183-10703263 1.0000 80 chr1:47646927-47647007 1.0000 80 chr2:86668077-86668157 1.0000 80 chr7:142491361-142491441 1.0000 80 chr17:47817302-47817382 1.0000 80 chr19:55770660-55770740 1.0000 80 chr12:57506095-57506175 1.0000 80 chr6:28367599-28367679 1.0000 80 chr2:178548340-178548420 1.0000 80 chr7:30954879-30954959 1.0000 80 chr11:118286517-11828659 1.0000 80 chr1:63989080-63989160 1.0000 80 chr1:27110703-27110783 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_CCAR2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/CCAR2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.263 G 0.277 T 0.23 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.263 G 0.276 T 0.23 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCWGGCCT MEME-1 width = 8 sites = 32 llr = 264 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::4::::: pos.-specific C aa::38a3 probability G :::a7::: matrix T ::6::3:7 bits 2.1 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 **** *** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTGGCCT consensus A CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:65835817-65835897 31 1.93e-05 AGCCAGGGAC CCTGGCCT GCCGTTTTCA chr13:52496159-52496239 54 1.93e-05 TGCAGGCAGC CCTGGCCT CTTGAGCAGG chr22:22441479-22441559 45 1.93e-05 ACTGCACAGG CCTGGCCT GTGGCTTCTG chr22:21396197-21396277 40 1.93e-05 aacctcctgt cctggcct cccaaagtgc chr12:50263011-50263091 22 1.93e-05 GATAAGGAGC CCTGGCCT CATTACATGG chr19:55727935-55728015 36 1.93e-05 TTTCGCTCTT CCTGGCCT TGCGGGCAGC chr22:21221881-21221961 62 1.93e-05 CACTCAGTCG CCTGGCCT TCCAGCCTCA chr7:65564736-65564816 7 3.86e-05 aAACAG CCAGGCCT GGTGGCTCTC chr6:31621394-31621474 2 3.86e-05 T CCAGGCCT ACAGGACTCC chr6:38645083-38645163 59 3.86e-05 TGAATAAATG CCAGGCCT TTCATTTTAC chr22:20013073-20013153 38 5.70e-05 ACCAGGTGGC CCTGCCCT GCCTCCTGTC chr15:45341381-45341461 14 5.70e-05 tcaccaagga cctgccct aactgtgtgc chr22:21923935-21924015 36 5.70e-05 AGCCTCACCT CCTGCCCT TTGGTTTCCC chr22:22428916-22428996 51 7.91e-05 CGCCTCCTTC CCTGGCCC CTGTGGAAAG chr22:23032596-23032676 39 7.91e-05 CTGGTCTTAA CCTGGCCC CTGCAGGGCT chr22:20071256-20071336 7 9.59e-05 TGTGGC CCTGGTCT TCCTTGTAAT chr11:3846091-3846171 73 1.14e-04 GAGATAAGGC CCAGCCCT chr1:207197866-207197946 41 1.14e-04 AGCCAACCAC CCAGCCCT CCCTGACTCC chr22:23030266-23030346 68 1.14e-04 aagacattgt ccagccct acaca chr16:88948623-88948703 25 1.37e-04 TCCAGCAGCC CCAGGCCC CATGGGGCAG chr22:19513183-19513263 24 1.37e-04 AGTTTGAACT CCAGGCCC TGGACTGAGG chr22:21452615-21452695 1 1.37e-04 . ccaggccc acccaggata chrX:119379089-119379169 6 1.53e-04 TTTCC CCAGGTCT GTGTGGCCTC chr17:56405581-56405661 37 1.53e-04 GTGTGTGTCT CCAGGTCT GTCCGTGCAG chrX:153168711-153168791 59 1.74e-04 CACTCTGCAG CCTGCCCC CAAGGGGCTC chr19:17008205-17008285 31 1.74e-04 CTGGCTCGGC CCTGCCCC CAGTATACTG chr1:201865096-201865176 41 2.10e-04 GCCTCCCTCC CCTGGTCC CTAGCACAGC chr1:46713983-46714063 14 2.10e-04 CAGATTAGAC CCTGGTCC TACACTCTTA chr16:57716785-57716865 38 2.10e-04 CCAATGGATC CCTGGTCC CACCACTGTT chr17:41150190-41150270 30 2.47e-04 AGTCGCCCTC CCAGCTCT TCCGTCGGCC chr6:26571865-26571945 14 2.47e-04 TTCGAAGTAC CCAGCTCT GTCTACGATA chr20:35724556-35724636 9 3.19e-04 CTGAAAGA CCTGTCCT TGGCCCTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:65835817-65835897 1.9e-05 30_[+1]_42 chr13:52496159-52496239 1.9e-05 53_[+1]_19 chr22:22441479-22441559 1.9e-05 44_[+1]_28 chr22:21396197-21396277 1.9e-05 39_[+1]_33 chr12:50263011-50263091 1.9e-05 21_[+1]_51 chr19:55727935-55728015 1.9e-05 35_[+1]_37 chr22:21221881-21221961 1.9e-05 61_[+1]_11 chr7:65564736-65564816 3.9e-05 6_[+1]_66 chr6:31621394-31621474 3.9e-05 1_[+1]_71 chr6:38645083-38645163 3.9e-05 58_[+1]_14 chr22:20013073-20013153 5.7e-05 37_[+1]_35 chr15:45341381-45341461 5.7e-05 13_[+1]_59 chr22:21923935-21924015 5.7e-05 35_[+1]_37 chr22:22428916-22428996 7.9e-05 50_[+1]_22 chr22:23032596-23032676 7.9e-05 38_[+1]_34 chr22:20071256-20071336 9.6e-05 6_[+1]_66 chr11:3846091-3846171 0.00011 72_[+1] chr1:207197866-207197946 0.00011 40_[+1]_32 chr22:23030266-23030346 0.00011 67_[+1]_5 chr16:88948623-88948703 0.00014 24_[+1]_48 chr22:19513183-19513263 0.00014 23_[+1]_49 chr22:21452615-21452695 0.00014 [+1]_72 chrX:119379089-119379169 0.00015 5_[+1]_67 chr17:56405581-56405661 0.00015 36_[+1]_36 chrX:153168711-153168791 0.00017 58_[+1]_14 chr19:17008205-17008285 0.00017 30_[+1]_42 chr1:201865096-201865176 0.00021 40_[+1]_32 chr1:46713983-46714063 0.00021 13_[+1]_59 chr16:57716785-57716865 0.00021 37_[+1]_35 chr17:41150190-41150270 0.00025 29_[+1]_43 chr6:26571865-26571945 0.00025 13_[+1]_59 chr20:35724556-35724636 0.00032 8_[+1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCWGGCCT width=8 seqs=32 chr11:65835817-65835897 ( 31) CCTGGCCT 1 chr13:52496159-52496239 ( 54) CCTGGCCT 1 chr22:22441479-22441559 ( 45) CCTGGCCT 1 chr22:21396197-21396277 ( 40) CCTGGCCT 1 chr12:50263011-50263091 ( 22) CCTGGCCT 1 chr19:55727935-55728015 ( 36) CCTGGCCT 1 chr22:21221881-21221961 ( 62) CCTGGCCT 1 chr7:65564736-65564816 ( 7) CCAGGCCT 1 chr6:31621394-31621474 ( 2) CCAGGCCT 1 chr6:38645083-38645163 ( 59) CCAGGCCT 1 chr22:20013073-20013153 ( 38) CCTGCCCT 1 chr15:45341381-45341461 ( 14) CCTGCCCT 1 chr22:21923935-21924015 ( 36) CCTGCCCT 1 chr22:22428916-22428996 ( 51) CCTGGCCC 1 chr22:23032596-23032676 ( 39) CCTGGCCC 1 chr22:20071256-20071336 ( 7) CCTGGTCT 1 chr11:3846091-3846171 ( 73) CCAGCCCT 1 chr1:207197866-207197946 ( 41) CCAGCCCT 1 chr22:23030266-23030346 ( 68) CCAGCCCT 1 chr16:88948623-88948703 ( 25) CCAGGCCC 1 chr22:19513183-19513263 ( 24) CCAGGCCC 1 chr22:21452615-21452695 ( 1) CCAGGCCC 1 chrX:119379089-119379169 ( 6) CCAGGTCT 1 chr17:56405581-56405661 ( 37) CCAGGTCT 1 chrX:153168711-153168791 ( 59) CCTGCCCC 1 chr19:17008205-17008285 ( 31) CCTGCCCC 1 chr1:201865096-201865176 ( 41) CCTGGTCC 1 chr1:46713983-46714063 ( 14) CCTGGTCC 1 chr16:57716785-57716865 ( 38) CCTGGTCC 1 chr17:41150190-41150270 ( 30) CCAGCTCT 1 chr6:26571865-26571945 ( 14) CCAGCTCT 1 chr20:35724556-35724636 ( 9) CCTGTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 4.0e+001 -1164 193 -1164 -1164 -1164 193 -1164 -1164 81 -1164 -1164 137 -1164 -1164 185 -1164 -1164 25 125 -287 -1164 151 -1164 12 -1164 193 -1164 -1164 -1164 25 -1164 158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.0e+001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.406250 0.000000 0.000000 0.593750 0.000000 0.000000 1.000000 0.000000 0.000000 0.312500 0.656250 0.031250 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.312500 0.000000 0.687500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGGCCT MEME-1 regular expression -------------------------------------------------------------------------------- CC[TA]G[GC][CT]C[TC] -------------------------------------------------------------------------------- Time 4.95 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAGCTG MEME-2 width = 8 sites = 13 llr = 125 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:8::2: pos.-specific C a9a::a:: probability G ::::a::a matrix T :::2::8: bits 2.1 1.9 * * ** * 1.7 * * ** * 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (13.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:30954879-30954959 42 1.94e-05 TAAGCCAGTG CCCAGCTG CCTGTGATAT chr1:47646927-47647007 44 1.94e-05 ATGGTGGGGG CCCAGCTG GTGCGTTATC chr1:26705052-26705132 71 1.94e-05 CCCCAGACAG CCCAGCTG TC chr2:183989510-183989590 57 1.94e-05 TTGCTGGATT CCCAGCTG GTTGCTGGTC chr22:20918684-20918764 53 1.94e-05 CTTTTCTCAG CCCAGCTG CAGCTCCAGC chr1:181122284-181122364 15 1.94e-05 TGATAATCTG CCCAGCTG GCAGGCGCTC chr3:132075577-132075657 29 1.94e-05 TGGCTGCAGC CCCAGCTG TCCTCTGGAG chr16:88948623-88948703 5 3.86e-05 ACAG CCCTGCTG TCTCCAGCAG chr19:55538979-55539059 18 3.86e-05 AGGTATGGGT CCCTGCTG GAGAAGCTGT chr22:20925920-20926000 41 3.86e-05 TAGCAGCGCC CCCTGCTG GGGGATGGGG chr17:27192456-27192536 63 5.81e-05 AGGGTGGGGG CCCAGCAG CCTTCTGTTT chr22:22441479-22441559 25 5.81e-05 AGGGTGAGTG CCCAGCAG CTACTGCACA chr1:63989080-63989160 16 7.51e-05 AGAGGAGCAA CACAGCTG TCTCTGTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:30954879-30954959 1.9e-05 41_[+2]_31 chr1:47646927-47647007 1.9e-05 43_[+2]_29 chr1:26705052-26705132 1.9e-05 70_[+2]_2 chr2:183989510-183989590 1.9e-05 56_[+2]_16 chr22:20918684-20918764 1.9e-05 52_[+2]_20 chr1:181122284-181122364 1.9e-05 14_[+2]_58 chr3:132075577-132075657 1.9e-05 28_[+2]_44 chr16:88948623-88948703 3.9e-05 4_[+2]_68 chr19:55538979-55539059 3.9e-05 17_[+2]_55 chr22:20925920-20926000 3.9e-05 40_[+2]_32 chr17:27192456-27192536 5.8e-05 62_[+2]_10 chr22:22441479-22441559 5.8e-05 24_[+2]_48 chr1:63989080-63989160 7.5e-05 15_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAGCTG width=8 seqs=13 chr7:30954879-30954959 ( 42) CCCAGCTG 1 chr1:47646927-47647007 ( 44) CCCAGCTG 1 chr1:26705052-26705132 ( 71) CCCAGCTG 1 chr2:183989510-183989590 ( 57) CCCAGCTG 1 chr22:20918684-20918764 ( 53) CCCAGCTG 1 chr1:181122284-181122364 ( 15) CCCAGCTG 1 chr3:132075577-132075657 ( 29) CCCAGCTG 1 chr16:88948623-88948703 ( 5) CCCTGCTG 1 chr19:55538979-55539059 ( 18) CCCTGCTG 1 chr22:20925920-20926000 ( 41) CCCTGCTG 1 chr17:27192456-27192536 ( 63) CCCAGCAG 1 chr22:22441479-22441559 ( 25) CCCAGCAG 1 chr1:63989080-63989160 ( 16) CACAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 4.2e+003 -1035 193 -1035 -1035 -158 181 -1035 -1035 -1035 193 -1035 -1035 173 -1035 -1035 1 -1035 -1035 185 -1035 -1035 193 -1035 -1035 -59 -1035 -1035 188 -1035 -1035 185 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.2e+003 0.000000 1.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.769231 0.000000 0.000000 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.153846 0.000000 0.000000 0.846154 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCTG MEME-2 regular expression -------------------------------------------------------------------------------- CCC[AT]GCTG -------------------------------------------------------------------------------- Time 8.71 secs. ******************************************************************************** ******************************************************************************** MOTIF CATCTTTT MEME-3 width = 8 sites = 4 llr = 46 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::a:::: probability G :::::::: matrix T ::a:aaaa bits 2.1 ** **** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATCTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:3184281-3184361 56 1.03e-05 tgctctggct catctttt gagtttcagc chr1:201865096-201865176 4 1.03e-05 GCC CATCTTTT CCTCCCCCTC chrX:136520411-136520491 14 1.03e-05 ttatttcttt catctttt ccattttacg chr6:38652187-38652267 12 1.03e-05 GCTATTTTTT CATCTTTT TCTTTAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:3184281-3184361 1e-05 55_[+3]_17 chr1:201865096-201865176 1e-05 3_[+3]_69 chrX:136520411-136520491 1e-05 13_[+3]_59 chr6:38652187-38652267 1e-05 11_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATCTTTT width=8 seqs=4 chr19:3184281-3184361 ( 56) CATCTTTT 1 chr1:201865096-201865176 ( 4) CATCTTTT 1 chrX:136520411-136520491 ( 14) CATCTTTT 1 chr6:38652187-38652267 ( 12) CATCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 2.7e+004 -865 193 -865 -865 211 -865 -865 -865 -865 -865 -865 212 -865 193 -865 -865 -865 -865 -865 212 -865 -865 -865 212 -865 -865 -865 212 -865 -865 -865 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.7e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTTT MEME-3 regular expression -------------------------------------------------------------------------------- CATCTTTT -------------------------------------------------------------------------------- Time 12.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTTCT MEME-4 width = 8 sites = 2 llr = 23 E-value = 7.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::::a: probability G :a:::::: matrix T a:aaaa:a bits 2.1 * **** * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:43011484-43011564 4 1.07e-05 CGT TGTTTTCT CCGTTACTCA chr22:20071256-20071336 56 1.07e-05 CCCCTCGGTC TGTTTTCT CTAATGGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:43011484-43011564 1.1e-05 3_[+4]_69 chr22:20071256-20071336 1.1e-05 55_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTTCT width=8 seqs=2 chr22:43011484-43011564 ( 4) TGTTTTCT 1 chr22:20071256-20071336 ( 56) TGTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 7.5e+004 -765 -765 -765 212 -765 -765 185 -765 -765 -765 -765 212 -765 -765 -765 212 -765 -765 -765 212 -765 -765 -765 212 -765 192 -765 -765 -765 -765 -765 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTCT MEME-4 regular expression -------------------------------------------------------------------------------- TGTTTTCT -------------------------------------------------------------------------------- Time 16.15 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTCTTT MEME-5 width = 8 sites = 4 llr = 44 E-value = 5.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8::::::: pos.-specific C ::::a::: probability G :::::::: matrix T 3aaa:aaa bits 2.1 *** *** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (16.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTCTTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156475096-156475176 12 8.99e-06 CCGAATACGC ATTTCTTT AAAGCCCTGA chr2:91815098-91815178 63 8.99e-06 CTAACAGCTG ATTTCTTT CTCCCAAAAT chrX:136520411-136520491 6 8.99e-06 tgttt atttcttt catcttttcc chr15:45341381-45341461 43 1.79e-05 taactggttt ttttcttt ctcgttcctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156475096-156475176 9e-06 11_[+5]_61 chr2:91815098-91815178 9e-06 62_[+5]_10 chrX:136520411-136520491 9e-06 5_[+5]_67 chr15:45341381-45341461 1.8e-05 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTCTTT width=8 seqs=4 chr1:156475096-156475176 ( 12) ATTTCTTT 1 chr2:91815098-91815178 ( 63) ATTTCTTT 1 chrX:136520411-136520491 ( 6) ATTTCTTT 1 chr15:45341381-45341461 ( 43) TTTTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 5.6e+004 170 -865 -865 12 -865 -865 -865 212 -865 -865 -865 212 -865 -865 -865 212 -865 193 -865 -865 -865 -865 -865 212 -865 -865 -865 212 -865 -865 -865 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.6e+004 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCTTT MEME-5 regular expression -------------------------------------------------------------------------------- [AT]TTTCTTT -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:17977603-17977683 5.84e-01 80 chr3:132063805-132063885 1.70e-01 80 chr3:132075577-132075657 3.41e-02 28_[+2(1.94e-05)]_44 chr6:38652187-38652267 7.84e-05 11_[+3(1.03e-05)]_61 chr3:132071577-132071657 5.33e-01 80 chr3:132056307-132056387 2.21e-01 80 chr3:132051083-132051163 2.28e-01 80 chr17:39041110-39041190 1.42e-02 80 chr17:39034452-39034532 5.96e-01 80 chr6:38654663-38654743 2.47e-01 80 chr3:132061387-132061467 3.11e-01 80 chr6:38645083-38645163 4.83e-03 58_[+1(3.86e-05)]_14 chr2:89219325-89219405 7.43e-01 80 chr3:132068767-132068847 3.08e-02 80 chr6:38649783-38649863 1.32e-02 80 chr22:21213879-21213959 2.40e-03 35_[+4(3.89e-05)]_37 chr16:88982394-88982474 9.95e-01 80 chr18:75696811-75696891 2.71e-01 80 chr17:39038826-39038906 4.90e-01 80 chr18:75696271-75696351 6.00e-01 80 chr6:26323417-26323497 6.56e-01 80 chr1:1415119-1415199 9.46e-01 80 chr6:68594006-68594086 4.13e-01 80 chr17:56405379-56405459 9.60e-01 80 chr1:150528252-150528332 1.00e+00 80 chr3:132047124-132047204 8.03e-01 80 chr21:44254164-44254244 9.91e-01 80 chr16:57716785-57716865 4.00e-02 80 chr1:46713983-46714063 1.21e-01 80 chr22:23013121-23013201 2.85e-02 32_[+3(6.79e-05)]_40 chr22:19418326-19418406 4.99e-01 80 chr19:17008205-17008285 2.12e-01 80 chr21:44260516-44260596 9.60e-01 80 chr10:3828275-3828355 2.66e-01 80 chr22:23047180-23047260 8.23e-01 80 chr22:23258994-23259074 6.01e-01 80 chr6:119558593-119558673 1.03e-01 80 chr22:22936426-22936506 7.13e-01 80 chr22:22347507-22347587 1.88e-01 80 chr17:56406937-56407017 9.80e-01 80 chr1:65888260-65888340 7.49e-01 80 chr6:27300547-27300627 9.87e-01 80 chr2:133015216-133015296 6.38e-01 80 chr22:21965645-21965725 9.86e-01 80 chr22:21299980-21300060 8.39e-01 80 chr22:21221881-21221961 3.54e-02 61_[+1(1.93e-05)]_11 chr9:136130026-136130106 3.05e-01 80 chr22:21261317-21261397 5.65e-02 80 chr19:47616465-47616545 9.99e-01 80 chr6:38650576-38650656 7.22e-01 80 chr22:20925920-20926000 8.15e-02 40_[+2(3.86e-05)]_32 chr3:132050508-132050588 9.44e-01 80 chr1:43402845-43402925 9.54e-01 80 chr22:22067447-22067527 9.91e-01 80 chr22:22918920-22919000 8.18e-01 80 chr22:20863785-20863865 8.80e-01 80 chr16:85335967-85336047 1.91e-01 80 chr8:82754688-82754768 1.00e+00 80 chr19:49466861-49466941 1.00e+00 80 chr1:149223519-149223599 1.52e-01 80 chr19:55538979-55539059 2.49e-01 17_[+2(3.86e-05)]_55 chr22:20871509-20871589 2.01e-02 80 chrX:136520411-136520491 6.60e-05 5_[+5(8.99e-06)]_[+3(1.03e-05)]_59 chrX:153168711-153168791 2.20e-01 80 chr7:129425012-129425092 5.25e-01 80 chr1:26648233-26648313 9.96e-01 80 chr22:21130621-21130701 1.10e-02 80 chr22:23030266-23030346 1.35e-02 80 chr17:56405581-56405661 1.73e-02 80 chr22:21923935-21924015 1.61e-02 35_[+1(5.70e-05)]_37 chr22:21271243-21271323 1.70e-02 80 chr6:26571865-26571945 1.85e-02 80 chr22:23032596-23032676 5.45e-03 38_[+1(7.91e-05)]_34 chr1:211849391-211849471 9.50e-01 80 chr22:20071256-20071336 1.18e-04 6_[+1(9.59e-05)]_41_[+4(1.07e-05)]_\ 17 chr22:23249193-23249273 9.01e-02 80 chr16:85417091-85417171 6.47e-01 80 chr3:13040962-13041042 6.01e-01 80 chr22:21452615-21452695 1.65e-02 80 chr2:91815098-91815178 5.24e-04 62_[+5(8.99e-06)]_10 chr7:98740585-98740665 1.00e+00 80 chr17:41400519-41400599 8.45e-01 80 chr22:21953656-21953736 1.27e-01 80 chr6:38670749-38670829 9.41e-01 80 chr16:14580658-14580738 2.88e-01 80 chr22:20861491-20861571 2.72e-01 80 chr22:23427424-23427504 1.69e-01 80 chr17:41150190-41150270 3.16e-03 80 chr17:27055447-27055527 1.20e-02 80 chr2:74682035-74682115 2.14e-01 80 chr3:195424894-195424974 4.84e-01 80 chr6:157704500-157704580 7.87e-01 80 chr22:19513183-19513263 5.08e-04 80 chr6:31621394-31621474 1.26e-02 1_[+1(3.86e-05)]_71 chr22:21369182-21369262 6.48e-02 80 chr6:32940058-32940138 1.67e-01 80 chr16:88948623-88948703 5.41e-03 4_[+2(3.86e-05)]_68 chr22:23252971-23253051 5.70e-01 80 chr1:116951992-116952072 1.79e-01 80 chr7:65564736-65564816 6.74e-02 6_[+1(3.86e-05)]_66 chr2:97304092-97304172 9.96e-01 80 chr22:22146050-22146130 4.30e-01 80 chr1:167597395-167597475 4.64e-02 80 chr11:47198955-47199035 4.32e-01 80 chr18:33077911-33077991 5.43e-02 80 chr20:49546026-49546106 9.28e-02 80 chr19:46911160-46911240 9.92e-01 80 chr5:108063285-108063365 2.58e-01 80 chr16:30887912-30887992 5.61e-01 80 chr3:4951054-4951134 9.06e-01 80 chr6:31790170-31790250 1.16e-01 80 chr21:44260764-44260844 8.20e-01 80 chr1:144534137-144534217 1.64e-01 80 chr1:155214594-155214674 1.00e+00 80 chr5:43065069-43065149 5.10e-02 19_[+4(6.90e-05)]_53 chr11:64863523-64863603 9.33e-01 80 chr6:27618566-27618646 5.72e-01 80 chr16:85569091-85569171 9.16e-01 80 chr21:34144261-34144341 8.08e-01 80 chr2:3622721-3622801 9.95e-01 80 chr22:23275770-23275850 7.11e-01 80 chr16:85604486-85604566 1.47e-01 80 chr22:21392960-21393040 1.66e-01 80 chr22:22428916-22428996 2.66e-01 50_[+1(7.91e-05)]_22 chr7:104652996-104653076 1.53e-01 80 chr1:201865096-201865176 1.11e-04 3_[+3(1.03e-05)]_69 chr7:116189039-116189119 3.51e-01 80 chr6:41904159-41904239 4.67e-01 80 chr11:65657735-65657815 5.23e-01 80 chr21:33105296-33105376 6.55e-01 80 chr1:205180879-205180959 8.97e-01 80 chr22:21234620-21234700 3.17e-01 80 chr6:28104601-28104681 3.40e-01 80 chr1:205091408-205091488 9.52e-01 80 chr7:156635672-156635752 9.28e-01 80 chr22:22555559-22555639 2.07e-01 80 chr1:222763411-222763491 2.08e-01 80 chr5:134469890-134469970 4.37e-01 80 chr16:70462284-70462364 1.31e-01 80 chr16:79804162-79804242 7.06e-01 80 chr11:118958747-11895882 5.58e-01 80 chr6:31737616-31737696 8.98e-01 80 chr1:147736385-147736465 2.73e-01 80 chr19:55727935-55728015 1.12e-03 35_[+1(1.93e-05)]_37 chr11:46016087-46016167 5.43e-02 80 chr21:43472105-43472185 4.77e-01 80 chr16:84710189-84710269 6.15e-01 80 chr17:72199654-72199734 2.70e-01 80 chr12:50263011-50263091 2.12e-02 21_[+1(1.93e-05)]_51 chr7:102632434-102632514 2.04e-02 80 chr17:62223251-62223331 2.87e-01 80 chr1:16395659-16395739 6.03e-01 80 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1.04e-01 80 chr2:152266220-152266300 9.15e-01 80 chr2:183989510-183989590 2.64e-02 56_[+2(1.94e-05)]_16 chr1:229690834-229690914 8.55e-01 80 chrX:153168463-153168543 4.54e-01 80 chr2:179279575-179279655 5.34e-01 80 chr22:19629094-19629174 9.71e-01 80 chr22:21922837-21922917 5.25e-02 80 chr1:207197866-207197946 2.37e-01 80 chr10:50508596-50508676 8.43e-02 80 chr22:22441479-22441559 4.69e-04 24_[+2(5.81e-05)]_12_[+1(1.93e-05)]_\ 28 chr22:21272744-21272824 7.89e-01 80 chr1:93297207-93297287 1.32e-03 64_[+5(6.41e-05)]_8 chr7:140714773-140714853 8.77e-01 80 chr4:106629846-106629926 7.13e-01 80 chr22:23266925-23267005 3.34e-01 80 chr13:52496159-52496239 8.38e-06 14_[+4(1.07e-05)]_31_[+1(1.93e-05)]_\ 19 chr11:65769651-65769731 1.25e-01 80 chr17:61920084-61920164 6.60e-01 80 chr22:22724157-22724237 7.31e-01 80 chr22:22089059-22089139 7.94e-01 80 chr1:149223718-149223798 9.15e-01 80 chr22:21222140-21222220 8.05e-01 80 chr1:224691345-224691425 4.28e-01 80 chr15:75246995-75247075 2.27e-01 80 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************