******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/CC2D1A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:180497127-180497207 1.0000 80 chr2:145290976-145291056 1.0000 80 chr2:227473239-227473319 1.0000 80 chr6:150262801-150262881 1.0000 80 chr17:8030128-8030208 1.0000 80 chr14:21150711-21150791 1.0000 80 chr17:7308501-7308581 1.0000 80 chr12:83729616-83729696 1.0000 80 chr6:43061738-43061818 1.0000 80 chr18:23570614-23570694 1.0000 80 chr6:139909585-139909665 1.0000 80 chr7:32674700-32674780 1.0000 80 chr1:31545348-31545428 1.0000 80 chr18:68129403-68129483 1.0000 80 chr17:6478732-6478812 1.0000 80 chr10:112261176-11226125 1.0000 80 chr13:19397258-19397338 1.0000 80 chr10:70884685-70884765 1.0000 80 chr3:49761800-49761880 1.0000 80 chr2:61293680-61293760 1.0000 80 chr20:61406321-61406401 1.0000 80 chr9:136114372-136114452 1.0000 80 chr12:102823609-10282368 1.0000 80 chr19:17420567-17420647 1.0000 80 chr16:86794827-86794907 1.0000 80 chr11:3663414-3663494 1.0000 80 chr10:25233832-25233912 1.0000 80 chr11:118978165-11897824 1.0000 80 chr22:36597883-36597963 1.0000 80 chr16:30662456-30662536 1.0000 80 chr15:89463909-89463989 1.0000 80 chr7:75368063-75368143 1.0000 80 chr1:114940357-114940437 1.0000 80 chr1:76156434-76156514 1.0000 80 chr19:47551260-47551340 1.0000 80 chr5:95041960-95042040 1.0000 80 chr19:10535004-10535084 1.0000 80 chr5:70882365-70882445 1.0000 80 chr4:48271537-48271617 1.0000 80 chr6:27768661-27768741 1.0000 80 chr17:7589402-7589482 1.0000 80 chr6:140469101-140469181 1.0000 80 chr10:75811936-75812016 1.0000 80 chrX:118544616-118544696 1.0000 80 chr11:59521664-59521744 1.0000 80 chr19:7939443-7939523 1.0000 80 chr16:3182010-3182090 1.0000 80 chr1:55353073-55353153 1.0000 80 chr6:24659285-24659365 1.0000 80 chr22:19284514-19284594 1.0000 80 chr6:150336919-150336999 1.0000 80 chr3:50637816-50637896 1.0000 80 chr1:113446849-113446929 1.0000 80 chr4:103266561-103266641 1.0000 80 chr17:43129492-43129572 1.0000 80 chr3:52568032-52568112 1.0000 80 chr12:110556322-11055640 1.0000 80 chr6:139811765-139811845 1.0000 80 chr3:50638691-50638771 1.0000 80 chr19:51611229-51611309 1.0000 80 chr15:52295420-52295500 1.0000 80 chr21:15293935-15294015 1.0000 80 chr9:27462610-27462690 1.0000 80 chr19:54640911-54640991 1.0000 80 chr3:4781585-4781665 1.0000 80 chr6:27799393-27799473 1.0000 80 chr7:100254047-100254127 1.0000 80 chr10:46762635-46762715 1.0000 80 chr16:838700-838780 1.0000 80 chr7:5013430-5013510 1.0000 80 chr19:48103708-48103788 1.0000 80 chr2:219134675-219134755 1.0000 80 chr2:230786895-230786975 1.0000 80 chr9:131938182-131938262 1.0000 80 chr2:171571363-171571443 1.0000 80 chr7:120687851-120687931 1.0000 80 chr7:116853123-116853203 1.0000 80 chr5:95298022-95298102 1.0000 80 chr5:112250415-112250495 1.0000 80 chr19:39470702-39470782 1.0000 80 chr6:158247318-158247398 1.0000 80 chr16:68098876-68098956 1.0000 80 chr12:1727866-1727946 1.0000 80 chr15:43806581-43806661 1.0000 80 chr14:38065271-38065351 1.0000 80 chr15:41523437-41523517 1.0000 80 chr3:52570690-52570770 1.0000 80 chr19:46195620-46195700 1.0000 80 chr14:24610927-24611007 1.0000 80 chr22:21056691-21056771 1.0000 80 chr1:89458597-89458677 1.0000 80 chr7:30323874-30323954 1.0000 80 chr16:67753409-67753489 1.0000 80 chr2:219262853-219262933 1.0000 80 chr16:10407432-10407512 1.0000 80 chr3:52567022-52567102 1.0000 80 chr19:45972907-45972987 1.0000 80 chr7:143078239-143078319 1.0000 80 chr12:51610993-51611073 1.0000 80 chr7:5821425-5821505 1.0000 80 chr4:144695323-144695403 1.0000 80 chr12:57028911-57028991 1.0000 80 chr18:711568-711648 1.0000 80 chr1:28388259-28388339 1.0000 80 chr11:65222497-65222577 1.0000 80 chr12:1308202-1308282 1.0000 80 chr3:171752983-171753063 1.0000 80 chr4:141294556-141294636 1.0000 80 chr17:74597802-74597882 1.0000 80 chr7:107300261-107300341 1.0000 80 chr22:30234244-30234324 1.0000 80 chr5:81267851-81267931 1.0000 80 chr12:117536633-11753671 1.0000 80 chr17:11876216-11876296 1.0000 80 chr6:4844481-4844561 1.0000 80 chr6:42158700-42158780 1.0000 80 chr12:92028435-92028515 1.0000 80 chr17:79375927-79376007 1.0000 80 chr19:42757692-42757772 1.0000 80 chr12:860521-860601 1.0000 80 chr6:26924047-26924127 1.0000 80 chr8:144660760-144660840 1.0000 80 chr4:159593074-159593154 1.0000 80 chr1:85744656-85744736 1.0000 80 chr7:158655900-158655980 1.0000 80 chr18:712455-712535 1.0000 80 chr5:163787837-163787917 1.0000 80 chr8:142583577-142583657 1.0000 80 chr7:14087771-14087851 1.0000 80 chr19:39926816-39926896 1.0000 80 chr1:24740132-24740212 1.0000 80 chr8:144629520-144629600 1.0000 80 chr12:31771694-31771774 1.0000 80 chr1:194828797-194828877 1.0000 80 chr1:84972382-84972462 1.0000 80 chr3:67048538-67048618 1.0000 80 chr19:42772521-42772601 1.0000 80 chr17:57232941-57233021 1.0000 80 chr1:85156404-85156484 1.0000 80 chr4:174255722-174255802 1.0000 80 chr6:27791717-27791797 1.0000 80 chr19:50372922-50373002 1.0000 80 chr3:167452603-167452683 1.0000 80 chr4:127877079-127877159 1.0000 80 chr16:58059446-58059526 1.0000 80 chr9:130692967-130693047 1.0000 80 chr22:20193749-20193829 1.0000 80 chr17:7338648-7338728 1.0000 80 chr19:48794536-48794616 1.0000 80 chr8:105602808-105602888 1.0000 80 chr11:63949251-63949331 1.0000 80 chr5:95046208-95046288 1.0000 80 chr1:93250586-93250666 1.0000 80 chr15:67539084-67539164 1.0000 80 chr16:3239529-3239609 1.0000 80 chr6:126111051-126111131 1.0000 80 chr18:3297496-3297576 1.0000 80 chr1:21695117-21695197 1.0000 80 chr14:23564167-23564247 1.0000 80 chr1:21780596-21780676 1.0000 80 chr12:53894415-53894495 1.0000 80 chr15:96679136-96679216 1.0000 80 chr5:138739633-138739713 1.0000 80 chr7:139967813-139967893 1.0000 80 chr22:20144676-20144756 1.0000 80 chr6:142337962-142338042 1.0000 80 chr17:16322572-16322652 1.0000 80 chr2:86947031-86947111 1.0000 80 chr2:200775787-200775867 1.0000 80 chr17:62502815-62502895 1.0000 80 chr22:30304089-30304169 1.0000 80 chr22:36651125-36651205 1.0000 80 chrX:37576069-37576149 1.0000 80 chr7:7082285-7082365 1.0000 80 chr5:110848360-110848440 1.0000 80 chr10:52499526-52499606 1.0000 80 chr3:156837379-156837459 1.0000 80 chrX:129091558-129091638 1.0000 80 chr19:49403397-49403477 1.0000 80 chr3:172468378-172468458 1.0000 80 chr17:46520368-46520448 1.0000 80 chr1:11740907-11740987 1.0000 80 chr2:38604426-38604506 1.0000 80 chr13:50510432-50510512 1.0000 80 chr19:14682969-14683049 1.0000 80 chr14:35122444-35122524 1.0000 80 chr8:91658669-91658749 1.0000 80 chr17:35084882-35084962 1.0000 80 chr8:90996370-90996450 1.0000 80 chr14:88491111-88491191 1.0000 80 chr2:38152594-38152674 1.0000 80 chr19:14607110-14607190 1.0000 80 chr9:102907626-102907706 1.0000 80 chr21:45905315-45905395 1.0000 80 chr6:36417116-36417196 1.0000 80 chr3:119813860-119813940 1.0000 80 chr9:116163540-116163620 1.0000 80 chr2:55459304-55459384 1.0000 80 chr3:122102190-122102270 1.0000 80 chr12:107168213-10716829 1.0000 80 chr1:203242370-203242450 1.0000 80 chr6:150071374-150071454 1.0000 80 chr5:42909181-42909261 1.0000 80 chr21:47645227-47645307 1.0000 80 chr22:23285005-23285085 1.0000 80 chr2:127066001-127066081 1.0000 80 chr8:67976668-67976748 1.0000 80 chr1:94312845-94312925 1.0000 80 chr18:1508983-1509063 1.0000 80 chr10:65801103-65801183 1.0000 80 chr1:16514359-16514439 1.0000 80 chr6:42104448-42104528 1.0000 80 chr12:104647352-10464743 1.0000 80 chr17:53894311-53894391 1.0000 80 chr1:205626812-205626892 1.0000 80 chr9:136285604-136285684 1.0000 80 chr3:193853886-193853966 1.0000 80 chr1:152020595-152020675 1.0000 80 chr1:149186350-149186430 1.0000 80 chr19:17580408-17580488 1.0000 80 chr7:99730410-99730490 1.0000 80 chr2:201390829-201390909 1.0000 80 chr8:66546527-66546607 1.0000 80 chr1:156675855-156675935 1.0000 80 chr6:149969986-149970066 1.0000 80 chr1:241859824-241859904 1.0000 80 chr14:23656412-23656492 1.0000 80 chr1:21985678-21985758 1.0000 80 chr10:81664588-81664668 1.0000 80 chr11:329516-329596 1.0000 80 chr2:73964598-73964678 1.0000 80 chr15:41245783-41245863 1.0000 80 chr18:32716422-32716502 1.0000 80 chr11:75095618-75095698 1.0000 80 chr8:25316538-25316618 1.0000 80 chr7:139702199-139702279 1.0000 80 chr1:43824518-43824598 1.0000 80 chr22:23470750-23470830 1.0000 80 chr17:37024564-37024644 1.0000 80 chr19:18526363-18526443 1.0000 80 chr16:20774997-20775077 1.0000 80 chr4:25052504-25052584 1.0000 80 chr1:27932979-27933059 1.0000 80 chr7:106587880-106587960 1.0000 80 chr1:54277377-54277457 1.0000 80 chr1:31384331-31384411 1.0000 80 chr12:94071347-94071427 1.0000 80 chr9:96792904-96792984 1.0000 80 chr10:22519505-22519585 1.0000 80 chr7:2343305-2343385 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_CC2D1A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/CC2D1A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.206 C 0.292 G 0.282 T 0.22 Background letter frequencies (from file dataset with add-one prior applied): A 0.206 C 0.292 G 0.282 T 0.22 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGATTGG MEME-1 width = 8 sites = 23 llr = 218 E-value = 9.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 92::1::: probability G 1:a:::aa matrix T :8::9a:: bits 2.3 * 2.1 * 1.8 ***** 1.6 ****** Relative 1.4 * ****** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGATTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:136285604-136285684 66 1.44e-05 ttgcttagtt ctgattgg ttaatac chr6:36417116-36417196 7 1.44e-05 agagtg ctgattgg tgcatttaca chr5:110848360-110848440 27 1.44e-05 GTGTGGAGGG CTGATTGG TGGCCGATAA chr15:96679136-96679216 40 1.44e-05 ttacagagtg ctgattgg tccattttta chr8:105602808-105602888 50 1.44e-05 tggaatcctg ctgattgg tgcgttttac chr4:174255722-174255802 66 1.44e-05 CTGCTCGATC CTGATTGG CGGCGGG chr17:57232941-57233021 30 1.44e-05 CGCCTCAGCT CTGATTGG CTGGAGCTCT chr8:142583577-142583657 49 1.44e-05 atgcttcact ctgattgg tcccctccca chr7:158655900-158655980 66 1.44e-05 acgcagagcg ctgattgg tccgttt chr6:26924047-26924127 21 1.44e-05 ttacagagag ctgattgg tctgtttaca chr4:141294556-141294636 49 1.44e-05 GACCTCAATC CTGATTGG ATGTCAGTGT chr6:43061738-43061818 38 1.44e-05 agcagtcagt ctgattgg ttgtggacag chr2:201390829-201390909 33 3.34e-05 TTCGCAGGAC CCGATTGG CTGATGGGGC chr7:100254047-100254127 70 3.34e-05 AACGGCGCCG CCGATTGG CTG chr6:140469101-140469181 11 3.34e-05 atacagagtg ccgattgg tgcattcaca chr5:180497127-180497207 73 3.34e-05 gaagtgcatg ccgattgg chr4:144695323-144695403 50 4.73e-05 agcagaagtt gtgattgg acatgcagtt chr5:95041960-95042040 34 4.73e-05 ccggtgggag gtgattgg atcatggcgg chr11:329516-329596 11 6.64e-05 agcccctggg ctgactgg gattgcaatg chr17:7338648-7338728 32 6.64e-05 TGATTGAGCT CTGACTGG CGACCCGACC chr7:116853123-116853203 15 7.98e-05 CCACCCACCC CAGATTGG TGACTTCAGG chr3:119813860-119813940 73 9.47e-05 AAAGCGCTGT CTCATTGG chr1:194828797-194828877 11 1.13e-04 tctaactaat ctgatggg gaggtggaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:136285604-136285684 1.4e-05 65_[+1]_7 chr6:36417116-36417196 1.4e-05 6_[+1]_66 chr5:110848360-110848440 1.4e-05 26_[+1]_46 chr15:96679136-96679216 1.4e-05 39_[+1]_33 chr8:105602808-105602888 1.4e-05 49_[+1]_23 chr4:174255722-174255802 1.4e-05 65_[+1]_7 chr17:57232941-57233021 1.4e-05 29_[+1]_43 chr8:142583577-142583657 1.4e-05 48_[+1]_24 chr7:158655900-158655980 1.4e-05 65_[+1]_7 chr6:26924047-26924127 1.4e-05 20_[+1]_52 chr4:141294556-141294636 1.4e-05 48_[+1]_24 chr6:43061738-43061818 1.4e-05 37_[+1]_35 chr2:201390829-201390909 3.3e-05 32_[+1]_40 chr7:100254047-100254127 3.3e-05 69_[+1]_3 chr6:140469101-140469181 3.3e-05 10_[+1]_62 chr5:180497127-180497207 3.3e-05 72_[+1] chr4:144695323-144695403 4.7e-05 49_[+1]_23 chr5:95041960-95042040 4.7e-05 33_[+1]_39 chr11:329516-329596 6.6e-05 10_[+1]_62 chr17:7338648-7338728 6.6e-05 31_[+1]_41 chr7:116853123-116853203 8e-05 14_[+1]_58 chr3:119813860-119813940 9.5e-05 72_[+1] chr1:194828797-194828877 0.00011 10_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGATTGG width=8 seqs=23 chr9:136285604-136285684 ( 66) CTGATTGG 1 chr6:36417116-36417196 ( 7) CTGATTGG 1 chr5:110848360-110848440 ( 27) CTGATTGG 1 chr15:96679136-96679216 ( 40) CTGATTGG 1 chr8:105602808-105602888 ( 50) CTGATTGG 1 chr4:174255722-174255802 ( 66) CTGATTGG 1 chr17:57232941-57233021 ( 30) CTGATTGG 1 chr8:142583577-142583657 ( 49) CTGATTGG 1 chr7:158655900-158655980 ( 66) CTGATTGG 1 chr6:26924047-26924127 ( 21) CTGATTGG 1 chr4:141294556-141294636 ( 49) CTGATTGG 1 chr6:43061738-43061818 ( 38) CTGATTGG 1 chr2:201390829-201390909 ( 33) CCGATTGG 1 chr7:100254047-100254127 ( 70) CCGATTGG 1 chr6:140469101-140469181 ( 11) CCGATTGG 1 chr5:180497127-180497207 ( 73) CCGATTGG 1 chr4:144695323-144695403 ( 50) GTGATTGG 1 chr5:95041960-95042040 ( 34) GTGATTGG 1 chr11:329516-329596 ( 11) CTGACTGG 1 chr17:7338648-7338728 ( 32) CTGACTGG 1 chr7:116853123-116853203 ( 15) CAGATTGG 1 chr3:119813860-119813940 ( 73) CTCATTGG 1 chr1:194828797-194828877 ( 11) CTGATGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 9.4e-006 -1117 165 -170 -1117 -224 -75 -1117 183 -1117 -274 176 -1117 228 -1117 -1117 -1117 -1117 -174 -1117 205 -1117 -1117 -269 212 -1117 -1117 182 -1117 -1117 -1117 182 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 9.4e-006 0.000000 0.913043 0.086957 0.000000 0.043478 0.173913 0.000000 0.782609 0.000000 0.043478 0.956522 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.913043 0.000000 0.000000 0.043478 0.956522 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-1 regular expression -------------------------------------------------------------------------------- CTGATTGG -------------------------------------------------------------------------------- Time 5.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGGGAA MEME-2 width = 8 sites = 36 llr = 300 E-value = 3.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::33:9a pos.-specific C :93::::: probability G :::58a1: matrix T 9172:::: bits 2.3 * 2.1 * 1.8 * * * 1.6 ** *** Relative 1.4 ** *** Entropy 1.1 *** **** (12.0 bits) 0.9 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGGGAA consensus CAA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:23470750-23470830 57 1.34e-05 TCCTGGTTAC TCTGGGAA ATCATGCAAG chr21:47645227-47645307 40 1.34e-05 aacgccagca tctgggaa gaggcccgtt chr16:58059446-58059526 54 1.34e-05 TTTCCTGCCG TCTGGGAA GCGTAAACGG chr6:42158700-42158780 55 1.34e-05 CAGGACCATT TCTGGGAA ACGTCCAGCT chr3:52567022-52567102 39 1.34e-05 TCGAGGTGTG TCTGGGAA GTCCAACCGG chr12:1727866-1727946 59 1.34e-05 ATCTGCCATT TCTGGGAA TTGTACAGGG chr22:36651125-36651205 20 2.33e-05 CTGGGCTTCT TCTAGGAA CCAAAGTCAC chr10:112261176-11226125 41 2.33e-05 GATGACTCAT TCTAGGAA TTGGCTGCAG chr18:68129403-68129483 54 2.33e-05 GGCTTTCTCC TCTAGGAA GGCGTGTTCA chr9:27462610-27462690 53 3.38e-05 GTCAATCCTT TCTTGGAA AAGTCTTAAA chr3:50638691-50638771 46 3.38e-05 TCCTCTGAGT TCTTGGAA GCGGCGCTCT chr16:10407432-10407512 43 4.36e-05 aaaaacaaat tctgagaa actgtcacag chr3:4781585-4781665 54 4.36e-05 gtgactgggt tctgagaa acagtgtttc chr21:15293935-15294015 45 4.36e-05 AACTGTGGTT TCTGAGAA TGCAAGATCT chr12:102823609-10282368 42 4.36e-05 GAATTTCCTT TCTGAGAA CTAGAGACTG chr13:19397258-19397338 58 4.36e-05 AACTGTGGTT TCTGAGAA TGCAAGATCT chr2:227473239-227473319 65 4.36e-05 TCTGATCTTT TCTGAGAA GCAGATTT chr22:36597883-36597963 31 6.86e-05 GTTGGTCAAT TCCGGGAA GTGATTTTGG chr8:144629520-144629600 25 8.93e-05 tcatgagttt tccaggaa aggggtgggg chr17:74597802-74597882 57 8.93e-05 tattatgttt tccaggaa acgggtgggg chr1:76156434-76156514 49 8.93e-05 ttcacttttt tccaggaa ttttcatgaa chr18:23570614-23570694 38 8.93e-05 AAAACTGCCT TCCAGGAA GGGCGAGGTA chr1:241859824-241859904 57 1.03e-04 ggtgagcaat tcctggaa ctgagggttt chr3:122102190-122102270 70 1.03e-04 TAACATGTCC TCCTGGAA CTG chr19:49403397-49403477 14 1.35e-04 AGGCTGGGAT TCCGAGAA AGAAGCGAGG chr7:107300261-107300341 69 1.35e-04 ATCAGGGTTC TCTGGGGA GGAG chr17:6478732-6478812 7 1.35e-04 GGAGAT TCTGGGGA GCCAAGCCGA chr3:171752983-171753063 14 1.58e-04 aaagagaatc tctaggga gcaaatgcca chr3:50637816-50637896 34 1.58e-04 CAGTGCTGGT TCCAAGAA CTGCAGCTCT chr18:711568-711648 52 1.68e-04 ACCCACTGTA TTTGGGAA ACACCGCTCT chr22:20193749-20193829 19 1.92e-04 gccagggtgg tcttggga aatgcaacat chr16:68098876-68098956 10 1.92e-04 GAAGAGGGT TCTTGGGA TCATCTTTCC chr7:32674700-32674780 19 1.92e-04 AAAACATTTT TCCTAGAA AATGCTTTAG chr1:205626812-205626892 62 2.18e-04 GCTGGTGGCC ACTGGGAA GTGAAGCTGT chr16:86794827-86794907 45 2.18e-04 TCAGAGGAGG ACTGGGAA GGAGCTGCGC chr8:105602808-105602888 37 2.34e-04 gattggctac ttttggaa tcctgctgat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:23470750-23470830 1.3e-05 56_[+2]_16 chr21:47645227-47645307 1.3e-05 39_[+2]_33 chr16:58059446-58059526 1.3e-05 53_[+2]_19 chr6:42158700-42158780 1.3e-05 54_[+2]_18 chr3:52567022-52567102 1.3e-05 38_[+2]_34 chr12:1727866-1727946 1.3e-05 58_[+2]_14 chr22:36651125-36651205 2.3e-05 19_[+2]_53 chr10:112261176-11226125 2.3e-05 40_[+2]_32 chr18:68129403-68129483 2.3e-05 53_[+2]_19 chr9:27462610-27462690 3.4e-05 52_[+2]_20 chr3:50638691-50638771 3.4e-05 45_[+2]_27 chr16:10407432-10407512 4.4e-05 42_[+2]_30 chr3:4781585-4781665 4.4e-05 53_[+2]_19 chr21:15293935-15294015 4.4e-05 44_[+2]_28 chr12:102823609-10282368 4.4e-05 41_[+2]_31 chr13:19397258-19397338 4.4e-05 57_[+2]_15 chr2:227473239-227473319 4.4e-05 64_[+2]_8 chr22:36597883-36597963 6.9e-05 30_[+2]_42 chr8:144629520-144629600 8.9e-05 24_[+2]_48 chr17:74597802-74597882 8.9e-05 56_[+2]_16 chr1:76156434-76156514 8.9e-05 48_[+2]_24 chr18:23570614-23570694 8.9e-05 37_[+2]_35 chr1:241859824-241859904 0.0001 56_[+2]_16 chr3:122102190-122102270 0.0001 69_[+2]_3 chr19:49403397-49403477 0.00013 13_[+2]_59 chr7:107300261-107300341 0.00013 68_[+2]_4 chr17:6478732-6478812 0.00013 6_[+2]_66 chr3:171752983-171753063 0.00016 13_[+2]_59 chr3:50637816-50637896 0.00016 33_[+2]_39 chr18:711568-711648 0.00017 51_[+2]_21 chr22:20193749-20193829 0.00019 18_[+2]_54 chr16:68098876-68098956 0.00019 9_[+2]_63 chr7:32674700-32674780 0.00019 18_[+2]_54 chr1:205626812-205626892 0.00022 61_[+2]_11 chr16:86794827-86794907 0.00022 44_[+2]_28 chr8:105602808-105602888 0.00023 36_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGGGAA width=8 seqs=36 chr22:23470750-23470830 ( 57) TCTGGGAA 1 chr21:47645227-47645307 ( 40) TCTGGGAA 1 chr16:58059446-58059526 ( 54) TCTGGGAA 1 chr6:42158700-42158780 ( 55) TCTGGGAA 1 chr3:52567022-52567102 ( 39) TCTGGGAA 1 chr12:1727866-1727946 ( 59) TCTGGGAA 1 chr22:36651125-36651205 ( 20) TCTAGGAA 1 chr10:112261176-11226125 ( 41) TCTAGGAA 1 chr18:68129403-68129483 ( 54) TCTAGGAA 1 chr9:27462610-27462690 ( 53) TCTTGGAA 1 chr3:50638691-50638771 ( 46) TCTTGGAA 1 chr16:10407432-10407512 ( 43) TCTGAGAA 1 chr3:4781585-4781665 ( 54) TCTGAGAA 1 chr21:15293935-15294015 ( 45) TCTGAGAA 1 chr12:102823609-10282368 ( 42) TCTGAGAA 1 chr13:19397258-19397338 ( 58) TCTGAGAA 1 chr2:227473239-227473319 ( 65) TCTGAGAA 1 chr22:36597883-36597963 ( 31) TCCGGGAA 1 chr8:144629520-144629600 ( 25) TCCAGGAA 1 chr17:74597802-74597882 ( 57) TCCAGGAA 1 chr1:76156434-76156514 ( 49) TCCAGGAA 1 chr18:23570614-23570694 ( 38) TCCAGGAA 1 chr1:241859824-241859904 ( 57) TCCTGGAA 1 chr3:122102190-122102270 ( 70) TCCTGGAA 1 chr19:49403397-49403477 ( 14) TCCGAGAA 1 chr7:107300261-107300341 ( 69) TCTGGGGA 1 chr17:6478732-6478812 ( 7) TCTGGGGA 1 chr3:171752983-171753063 ( 14) TCTAGGGA 1 chr3:50637816-50637896 ( 34) TCCAAGAA 1 chr18:711568-711648 ( 52) TTTGGGAA 1 chr22:20193749-20193829 ( 19) TCTTGGGA 1 chr16:68098876-68098956 ( 10) TCTTGGGA 1 chr7:32674700-32674780 ( 19) TCCTAGAA 1 chr1:205626812-205626892 ( 62) ACTGGGAA 1 chr16:86794827-86794907 ( 45) ACTGGGAA 1 chr8:105602808-105602888 ( 37) TTTTGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 3.5e-003 -189 -1181 -1181 210 -1181 169 -1181 -199 -1181 -7 -1181 171 28 -1181 90 1 28 -1181 141 -1181 -1181 -1181 182 -1181 206 -1181 -102 -1181 228 -1181 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 3.5e-003 0.055556 0.000000 0.000000 0.944444 0.000000 0.944444 0.000000 0.055556 0.000000 0.277778 0.000000 0.722222 0.250000 0.000000 0.527778 0.222222 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.861111 0.000000 0.138889 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAA MEME-2 regular expression -------------------------------------------------------------------------------- TC[TC][GAT][GA]GAA -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCAATCA MEME-3 width = 8 sites = 15 llr = 144 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7::a911a pos.-specific C :aa::19: probability G 1::::::: matrix T 1:::18:: bits 2.3 * * 2.1 * * 1.8 **** * 1.6 **** * Relative 1.4 ******* Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCAATCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:172468378-172468458 40 9.86e-06 CACACGCACA ACCAATCA AGCGGCGCCT chr3:156837379-156837459 51 9.86e-06 ctccccatca accaatca ggactcagct chr15:67539084-67539164 40 9.86e-06 gcaaaaacgc accaatca gcactctgtg chr1:194828797-194828877 61 9.86e-06 ttgtaaacgc accaatca gcgccctgtc chr8:142583577-142583657 15 9.86e-06 ccctcttgca accaatca ggctggtcac chr12:92028435-92028515 12 9.86e-06 ttgtaaatgc accaatca gcactctgtg chr10:22519505-22519585 32 2.04e-05 CGCGTCTTGG TCCAATCA GCATTTTGAG chr15:52295420-52295500 64 2.04e-05 gcctccatca tccaatca cctcccacc chr14:35122444-35122524 30 2.96e-05 cacacacatt accaaaca gatgggagca chr1:31545348-31545428 7 2.96e-05 aagtac accaaaca ggaagaaagt chr17:57232941-57233021 59 4.31e-05 TGCTATCTCA GCCAATCA CAAGCCGGGC chr4:159593074-159593154 52 4.31e-05 TTTCGGGACA GCCAATCA TATGAGTCAA chr1:85744656-85744736 26 5.01e-05 ACAGTCAGCA ACCAATAA AAATGCTCAG chr6:43061738-43061818 58 6.06e-05 gtggacagca accattca gaggctggag chr6:24659285-24659365 37 7.37e-05 gaaagctgac accaacca gtttgaagac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:172468378-172468458 9.9e-06 39_[+3]_33 chr3:156837379-156837459 9.9e-06 50_[+3]_22 chr15:67539084-67539164 9.9e-06 39_[+3]_33 chr1:194828797-194828877 9.9e-06 60_[+3]_12 chr8:142583577-142583657 9.9e-06 14_[+3]_58 chr12:92028435-92028515 9.9e-06 11_[+3]_61 chr10:22519505-22519585 2e-05 31_[+3]_41 chr15:52295420-52295500 2e-05 63_[+3]_9 chr14:35122444-35122524 3e-05 29_[+3]_43 chr1:31545348-31545428 3e-05 6_[+3]_66 chr17:57232941-57233021 4.3e-05 58_[+3]_14 chr4:159593074-159593154 4.3e-05 51_[+3]_21 chr1:85744656-85744736 5e-05 25_[+3]_47 chr6:43061738-43061818 6.1e-05 57_[+3]_15 chr6:24659285-24659365 7.4e-05 36_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCAATCA width=8 seqs=15 chr3:172468378-172468458 ( 40) ACCAATCA 1 chr3:156837379-156837459 ( 51) ACCAATCA 1 chr15:67539084-67539164 ( 40) ACCAATCA 1 chr1:194828797-194828877 ( 61) ACCAATCA 1 chr8:142583577-142583657 ( 15) ACCAATCA 1 chr12:92028435-92028515 ( 12) ACCAATCA 1 chr10:22519505-22519585 ( 32) TCCAATCA 1 chr15:52295420-52295500 ( 64) TCCAATCA 1 chr14:35122444-35122524 ( 30) ACCAAACA 1 chr1:31545348-31545428 ( 7) ACCAAACA 1 chr17:57232941-57233021 ( 59) GCCAATCA 1 chr4:159593074-159593154 ( 52) GCCAATCA 1 chr1:85744656-85744736 ( 26) ACCAATAA 1 chr6:43061738-43061818 ( 58) ACCATTCA 1 chr6:24659285-24659365 ( 37) ACCAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 3.5e+002 183 -1055 -108 -72 -1055 178 -1055 -1055 -1055 178 -1055 -1055 228 -1055 -1055 -1055 218 -1055 -1055 -172 -63 -213 -1055 186 -162 168 -1055 -1055 228 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.5e+002 0.733333 0.000000 0.133333 0.133333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.933333 0.000000 0.000000 0.066667 0.133333 0.066667 0.000000 0.800000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAATCA MEME-3 regular expression -------------------------------------------------------------------------------- ACCAATCA -------------------------------------------------------------------------------- Time 12.51 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAT MEME-4 width = 8 sites = 2 llr = 25 E-value = 5.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaaaaaa: pos.-specific C :::::::: probability G :::::::: matrix T :::::::a bits 2.3 ******** 2.1 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (18.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:37024564-37024644 35 3.46e-06 GAGCCAGGAG AAAAAAAT GCGCGTTTCC chr6:158247318-158247398 58 3.46e-06 taaaaataca aaaaaaat tagctgggcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:37024564-37024644 3.5e-06 34_[+4]_38 chr6:158247318-158247398 3.5e-06 57_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAT width=8 seqs=2 chr17:37024564-37024644 ( 35) AAAAAAAT 1 chr6:158247318-158247398 ( 58) AAAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 5.8e+003 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 -765 -765 -765 218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.8e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAT MEME-4 regular expression -------------------------------------------------------------------------------- AAAAAAAT -------------------------------------------------------------------------------- Time 16.22 secs. ******************************************************************************** ******************************************************************************** MOTIF MHAGAAAA MEME-5 width = 8 sites = 9 llr = 92 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 42a:aaaa pos.-specific C 63:::::: probability G :::a:::: matrix T :4:::::: bits 2.3 * **** 2.1 * **** 1.8 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (14.8 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTAGAAAA consensus AC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:35084882-35084962 39 4.74e-06 TGCGGACTGC ATAGAAAA CTCATCAGCA chr5:163787837-163787917 39 4.74e-06 ACTTCCCTGA ATAGAAAA CCACTGGATC chr22:36597883-36597963 52 1.15e-05 ATTTTGGTTC CTAGAAAA ACCCACATGG chr7:32674700-32674780 50 1.15e-05 AACATTTTTC CTAGAAAA TGTTTTAGGA chr14:23656412-23656492 56 1.78e-05 CACCTACTGG ACAGAAAA GGTTATGGCT chr14:24610927-24611007 53 1.78e-05 ATTGTGAAGC ACAGAAAA TTGCCCGCAC chr1:203242370-203242450 45 3.11e-05 GCCTCGAGGC CCAGAAAA GGTAACCTGG chr21:15293935-15294015 67 3.74e-05 AGATCTGCAC CAAGAAAA GGATTA chr18:23570614-23570694 24 3.74e-05 TAACAGTGGG CAAGAAAA CTGCCTTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:35084882-35084962 4.7e-06 38_[+5]_34 chr5:163787837-163787917 4.7e-06 38_[+5]_34 chr22:36597883-36597963 1.1e-05 51_[+5]_21 chr7:32674700-32674780 1.1e-05 49_[+5]_23 chr14:23656412-23656492 1.8e-05 55_[+5]_17 chr14:24610927-24611007 1.8e-05 52_[+5]_20 chr1:203242370-203242450 3.1e-05 44_[+5]_28 chr21:15293935-15294015 3.7e-05 66_[+5]_6 chr18:23570614-23570694 3.7e-05 23_[+5]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MHAGAAAA width=8 seqs=9 chr17:35084882-35084962 ( 39) ATAGAAAA 1 chr5:163787837-163787917 ( 39) ATAGAAAA 1 chr22:36597883-36597963 ( 52) CTAGAAAA 1 chr7:32674700-32674780 ( 50) CTAGAAAA 1 chr14:23656412-23656492 ( 56) ACAGAAAA 1 chr14:24610927-24611007 ( 53) ACAGAAAA 1 chr1:203242370-203242450 ( 45) CCAGAAAA 1 chr21:15293935-15294015 ( 67) CAAGAAAA 1 chr18:23570614-23570694 ( 24) CAAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3898 E= 1.0e+004 111 93 -982 -982 11 19 -982 101 228 -982 -982 -982 -982 -982 182 -982 228 -982 -982 -982 228 -982 -982 -982 228 -982 -982 -982 228 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.0e+004 0.444444 0.555556 0.000000 0.000000 0.222222 0.333333 0.000000 0.444444 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MHAGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [CA][TCA]AGAAAA -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:180497127-180497207 1.36e-01 72_[+1(3.34e-05)] chr2:145290976-145291056 4.60e-01 80 chr2:227473239-227473319 2.28e-02 64_[+2(4.36e-05)]_8 chr6:150262801-150262881 9.98e-01 80 chr17:8030128-8030208 9.60e-01 80 chr14:21150711-21150791 7.00e-01 80 chr17:7308501-7308581 9.11e-01 80 chr12:83729616-83729696 7.68e-01 80 chr6:43061738-43061818 1.04e-03 37_[+1(1.44e-05)]_12_[+3(6.06e-05)]_\ 15 chr18:23570614-23570694 5.94e-04 23_[+5(3.74e-05)]_6_[+2(8.93e-05)]_\ 13_[+5(5.50e-05)]_14 chr6:139909585-139909665 1.61e-01 80 chr7:32674700-32674780 1.89e-04 3_[+5(5.50e-05)]_9_[+5(1.15e-05)]_4_\ [+5(5.50e-05)]_9_[+5(1.15e-05)]_23 chr1:31545348-31545428 9.24e-03 6_[+3(2.96e-05)]_66 chr18:68129403-68129483 1.33e-02 53_[+2(2.33e-05)]_19 chr17:6478732-6478812 8.16e-02 80 chr10:112261176-11226125 8.40e-02 40_[+2(2.33e-05)]_32 chr13:19397258-19397338 2.39e-02 57_[+2(4.36e-05)]_15 chr10:70884685-70884765 9.73e-01 80 chr3:49761800-49761880 2.72e-01 80 chr2:61293680-61293760 8.88e-01 80 chr20:61406321-61406401 8.41e-01 80 chr9:136114372-136114452 8.48e-01 80 chr12:102823609-10282368 4.42e-02 41_[+2(4.36e-05)]_31 chr19:17420567-17420647 9.69e-01 80 chr16:86794827-86794907 1.96e-01 80 chr11:3663414-3663494 9.94e-01 80 chr10:25233832-25233912 9.50e-01 80 chr11:118978165-11897824 5.72e-01 80 chr22:36597883-36597963 2.55e-04 30_[+2(6.86e-05)]_13_[+5(1.15e-05)]_\ 21 chr16:30662456-30662536 6.81e-01 80 chr15:89463909-89463989 1.28e-01 80 chr7:75368063-75368143 9.91e-01 80 chr1:114940357-114940437 5.43e-01 80 chr1:76156434-76156514 3.59e-02 48_[+2(8.93e-05)]_24 chr19:47551260-47551340 8.05e-01 80 chr5:95041960-95042040 1.65e-01 33_[+1(4.73e-05)]_39 chr19:10535004-10535084 9.73e-01 80 chr5:70882365-70882445 1.05e-01 80 chr4:48271537-48271617 8.74e-01 80 chr6:27768661-27768741 9.30e-02 80 chr17:7589402-7589482 2.86e-01 80 chr6:140469101-140469181 7.13e-03 10_[+1(3.34e-05)]_62 chr10:75811936-75812016 9.83e-01 80 chrX:118544616-118544696 8.07e-02 80 chr11:59521664-59521744 7.48e-01 80 chr19:7939443-7939523 3.92e-01 80 chr16:3182010-3182090 9.80e-01 80 chr1:55353073-55353153 8.69e-01 80 chr6:24659285-24659365 3.37e-02 36_[+3(7.37e-05)]_36 chr22:19284514-19284594 6.27e-02 80 chr6:150336919-150336999 1.16e-01 80 chr3:50637816-50637896 1.09e-01 80 chr1:113446849-113446929 9.12e-02 80 chr4:103266561-103266641 9.00e-01 80 chr17:43129492-43129572 4.01e-01 80 chr3:52568032-52568112 8.32e-01 80 chr12:110556322-11055640 6.73e-01 80 chr6:139811765-139811845 2.04e-01 80 chr3:50638691-50638771 1.78e-01 45_[+2(3.38e-05)]_27 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************