******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/CBX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:23128521-23128601 1.0000 80 chr19:22130743-22130823 1.0000 80 chr19:22327353-22327433 1.0000 80 chr3:156393403-156393483 1.0000 80 chr7:46508527-46508607 1.0000 80 chr2:129226931-129227011 1.0000 80 chr5:173019239-173019319 1.0000 80 chr7:86957780-86957860 1.0000 80 chr19:58077917-58077997 1.0000 80 chr19:13791660-13791740 1.0000 80 chr11:17393328-17393408 1.0000 80 chr15:75434986-75435066 1.0000 80 chr20:36871397-36871477 1.0000 80 chr2:31919121-31919201 1.0000 80 chr7:111436892-111436972 1.0000 80 chr2:41722316-41722396 1.0000 80 chr6:18824168-18824248 1.0000 80 chr4:25225518-25225598 1.0000 80 chr17:76270027-76270107 1.0000 80 chr21:45206816-45206896 1.0000 80 chr16:85382221-85382301 1.0000 80 chr7:64869095-64869175 1.0000 80 chr10:21486926-21487006 1.0000 80 chr9:132099675-132099755 1.0000 80 chr16:14383730-14383810 1.0000 80 chr22:18553965-18554045 1.0000 80 chr11:94681281-94681361 1.0000 80 chr20:32535653-32535733 1.0000 80 chr10:5207869-5207949 1.0000 80 chr1:23749221-23749301 1.0000 80 chr18:77782802-77782882 1.0000 80 chr1:31359707-31359787 1.0000 80 chr7:75436051-75436131 1.0000 80 chr17:76133556-76133636 1.0000 80 chr11:69059887-69059967 1.0000 80 chr9:130285843-130285923 1.0000 80 chr19:3059872-3059952 1.0000 80 chr2:160944519-160944599 1.0000 80 chr10:72408382-72408462 1.0000 80 chr16:30108407-30108487 1.0000 80 chr19:970803-970883 1.0000 80 chr19:6292182-6292262 1.0000 80 chr10:50323734-50323814 1.0000 80 chr19:16993088-16993168 1.0000 80 chr12:51310242-51310322 1.0000 80 chr7:5437129-5437209 1.0000 80 chr19:13959069-13959149 1.0000 80 chr19:17716051-17716131 1.0000 80 chr19:16251933-16252013 1.0000 80 chr12:111742529-11174260 1.0000 80 chrX:131157086-131157166 1.0000 80 chr7:5590210-5590290 1.0000 80 chr19:703479-703559 1.0000 80 chr19:3627416-3627496 1.0000 80 chr6:28294272-28294352 1.0000 80 chr12:108522884-10852296 1.0000 80 chr12:109025758-10902583 1.0000 80 chr1:235001324-235001404 1.0000 80 chr11:75248198-75248278 1.0000 80 chr20:46150101-46150181 1.0000 80 chr2:6985632-6985712 1.0000 80 chr16:85362804-85362884 1.0000 80 chr1:9689648-9689728 1.0000 80 chr16:10502844-10502924 1.0000 80 chr9:101127652-101127732 1.0000 80 chr1:31376656-31376736 1.0000 80 chr22:22813677-22813757 1.0000 80 chr7:149226351-149226431 1.0000 80 chr1:26865171-26865251 1.0000 80 chr4:119606103-119606183 1.0000 80 chr8:103540905-103540985 1.0000 80 chr2:178937430-178937510 1.0000 80 chr1:205125240-205125320 1.0000 80 chr19:14494723-14494803 1.0000 80 chr11:118781686-11878176 1.0000 80 chr9:132178005-132178085 1.0000 80 chr1:16471243-16471323 1.0000 80 chr22:25201856-25201936 1.0000 80 chr19:54605747-54605827 1.0000 80 chr19:1812127-1812207 1.0000 80 chr19:42427279-42427359 1.0000 80 chr16:16215190-16215270 1.0000 80 chr7:131021808-131021888 1.0000 80 chr7:92418047-92418127 1.0000 80 chr17:38593608-38593688 1.0000 80 chr19:1775093-1775173 1.0000 80 chr3:38474500-38474580 1.0000 80 chr11:12170460-12170540 1.0000 80 chr16:3433144-3433224 1.0000 80 chr16:30933348-30933428 1.0000 80 chr7:5594235-5594315 1.0000 80 chr16:11659768-11659848 1.0000 80 chr7:99129107-99129187 1.0000 80 chr10:70621234-70621314 1.0000 80 chr1:55462106-55462186 1.0000 80 chr6:28688401-28688481 1.0000 80 chr7:99091590-99091670 1.0000 80 chr11:64612708-64612788 1.0000 80 chr1:23689002-23689082 1.0000 80 chr9:123477278-123477358 1.0000 80 chr8:142420760-142420840 1.0000 80 chr9:130700423-130700503 1.0000 80 chr1:189238296-189238376 1.0000 80 chr19:50309202-50309282 1.0000 80 chr8:8216153-8216233 1.0000 80 chr1:23811361-23811441 1.0000 80 chr20:32891410-32891490 1.0000 80 chr1:12805761-12805841 1.0000 80 chr15:64231853-64231933 1.0000 80 chr3:13856772-13856852 1.0000 80 chr5:137225344-137225424 1.0000 80 chr19:2933573-2933653 1.0000 80 chr20:36966245-36966325 1.0000 80 chr16:57716813-57716893 1.0000 80 chr19:46367118-46367198 1.0000 80 chr3:194048283-194048363 1.0000 80 chr3:186648080-186648160 1.0000 80 chr16:442037-442117 1.0000 80 chr19:10728291-10728371 1.0000 80 chr19:9517703-9517783 1.0000 80 chr17:40713677-40713757 1.0000 80 chr19:3822032-3822112 1.0000 80 chr19:3146755-3146835 1.0000 80 chr19:11019191-11019271 1.0000 80 chr1:33862631-33862711 1.0000 80 chr16:85462035-85462115 1.0000 80 chr22:19961926-19962006 1.0000 80 chr1:25869771-25869851 1.0000 80 chr7:128523754-128523834 1.0000 80 chr19:8223417-8223497 1.0000 80 chr17:25681747-25681827 1.0000 80 chr11:66313918-66313998 1.0000 80 chr19:10196518-10196598 1.0000 80 chr19:8306690-8306770 1.0000 80 chr10:73078812-73078892 1.0000 80 chr2:174163421-174163501 1.0000 80 chr19:18174539-18174619 1.0000 80 chr9:125702992-125703072 1.0000 80 chr20:48961129-48961209 1.0000 80 chr19:4233522-4233602 1.0000 80 chr19:4867965-4868045 1.0000 80 chr9:130660213-130660293 1.0000 80 chr1:226891302-226891382 1.0000 80 chr19:42434068-42434148 1.0000 80 chr20:3776503-3776583 1.0000 80 chr7:75364574-75364654 1.0000 80 chr20:55989957-55990037 1.0000 80 chr10:73705766-73705846 1.0000 80 chr19:1400741-1400821 1.0000 80 chr11:119039292-11903937 1.0000 80 chr19:1512882-1512962 1.0000 80 chr19:48854853-48854933 1.0000 80 chr17:17743316-17743396 1.0000 80 chr7:127835054-127835134 1.0000 80 chr19:41333929-41334009 1.0000 80 chr17:48217472-48217552 1.0000 80 chr12:109125429-10912550 1.0000 80 chr1:228556144-228556224 1.0000 80 chr14:23120443-23120523 1.0000 80 chr1:53833914-53833994 1.0000 80 chr7:44835830-44835910 1.0000 80 chr1:168421753-168421833 1.0000 80 chr20:362433-362513 1.0000 80 chr12:92787429-92787509 1.0000 80 chr1:41267805-41267885 1.0000 80 chr7:66717083-66717163 1.0000 80 chr7:50286303-50286383 1.0000 80 chr3:196367019-196367099 1.0000 80 chr12:122250260-12225034 1.0000 80 chr19:45541194-45541274 1.0000 80 chr6:43902590-43902670 1.0000 80 chr2:113808603-113808683 1.0000 80 chr4:65096594-65096674 1.0000 80 chr17:45726496-45726576 1.0000 80 chr1:26404151-26404231 1.0000 80 chr11:69239616-69239696 1.0000 80 chr3:14465124-14465204 1.0000 80 chr11:695562-695642 1.0000 80 chr10:21455576-21455656 1.0000 80 chr16:20758795-20758875 1.0000 80 chr2:38742965-38743045 1.0000 80 chrX:48644518-48644598 1.0000 80 chr1:12209134-12209214 1.0000 80 chr12:129593819-12959389 1.0000 80 chr19:4058301-4058381 1.0000 80 chr19:47017069-47017149 1.0000 80 chr19:18451214-18451294 1.0000 80 chr11:67806858-67806938 1.0000 80 chr12:123921703-12392178 1.0000 80 chr19:17444955-17445035 1.0000 80 chr5:176924913-176924993 1.0000 80 chr11:67275376-67275456 1.0000 80 chr20:44834850-44834930 1.0000 80 chr19:14116345-14116425 1.0000 80 chr21:39601338-39601418 1.0000 80 chr1:25235948-25236028 1.0000 80 chr15:56524419-56524499 1.0000 80 chr8:124702699-124702779 1.0000 80 chr16:9085990-9086070 1.0000 80 chr20:32379877-32379957 1.0000 80 chr1:18081784-18081864 1.0000 80 chr1:40942767-40942847 1.0000 80 chr21:30899031-30899111 1.0000 80 chr1:39634260-39634340 1.0000 80 chr19:3374433-3374513 1.0000 80 chr8:12974891-12974971 1.0000 80 chr19:29630297-29630377 1.0000 80 chr16:88478753-88478833 1.0000 80 chr7:73476715-73476795 1.0000 80 chr1:228386856-228386936 1.0000 80 chr9:130660944-130661024 1.0000 80 chr20:31162166-31162246 1.0000 80 chr2:69066573-69066653 1.0000 80 chr9:37382277-37382357 1.0000 80 chr10:72431675-72431755 1.0000 80 chr16:30968299-30968379 1.0000 80 chr17:72433959-72434039 1.0000 80 chr7:73081799-73081879 1.0000 80 chr1:31315783-31315863 1.0000 80 chr19:36400031-36400111 1.0000 80 chr19:10542024-10542104 1.0000 80 chr19:38146989-38147069 1.0000 80 chr11:57297826-57297906 1.0000 80 chr2:240216439-240216519 1.0000 80 chr10:58130665-58130745 1.0000 80 chr10:29134076-29134156 1.0000 80 chr17:56415992-56416072 1.0000 80 chr1:16832995-16833075 1.0000 80 chr17:76142717-76142797 1.0000 80 chr16:85337192-85337272 1.0000 80 chr19:10534216-10534296 1.0000 80 chr16:4375314-4375394 1.0000 80 chr7:2442713-2442793 1.0000 80 chr1:15771426-15771506 1.0000 80 chr17:75170863-75170943 1.0000 80 chr1:20486669-20486749 1.0000 80 chr7:73735019-73735099 1.0000 80 chr6:63362728-63362808 1.0000 80 chr19:45945836-45945916 1.0000 80 chr6:34540518-34540598 1.0000 80 chr17:56743886-56743966 1.0000 80 chrX:153191346-153191426 1.0000 80 chr20:40228616-40228696 1.0000 80 chr19:52158167-52158247 1.0000 80 chr2:232552770-232552850 1.0000 80 chr19:3434718-3434798 1.0000 80 chr16:11707867-11707947 1.0000 80 chr1:230303239-230303319 1.0000 80 chr11:59936908-59936988 1.0000 80 chr19:49122900-49122980 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_CBX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/CBX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.271 G 0.268 T 0.23 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.271 G 0.268 T 0.23 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAMTGRG MEME-1 width = 8 sites = 95 llr = 757 E-value = 1.1e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88a5::51 pos.-specific C 11:5:::: probability G 11:::a59 matrix T ::::a::: bits 2.1 1.9 * * 1.7 * ** * 1.5 * ** * Relative 1.3 *** ** * Entropy 1.1 *** **** (11.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACTGAG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:34540518-34540598 25 2.36e-05 acagatggga aaactgag gcccaAGCTC chr11:57297826-57297906 28 2.36e-05 acggatgtgg aaactgag gcctagccca chr7:73081799-73081879 7 2.36e-05 aagaga aaactgag gcttggggag chr20:31162166-31162246 4 2.36e-05 aag aaactgag gcacccagtg chr19:14116345-14116425 29 2.36e-05 acaggatgga aaactgag gcctcagatg chr19:17444955-17445035 28 2.36e-05 acaggtgagg aaactgag gcccagagcg chr1:12209134-12209214 49 2.36e-05 acagatggga aaactgag ccccatagag chr1:26404151-26404231 27 2.36e-05 acagatgaga aaactgag tcacacagag chr19:45541194-45541274 39 2.36e-05 acagatgagg aaactgag tccggagagg chr1:41267805-41267885 18 2.36e-05 ccggatgagg aaactgag tctccgtaag chr19:4867965-4868045 62 2.36e-05 CCCTATGGCC AAACTGAG GCTGCGAGAA chr20:48961129-48961209 51 2.36e-05 gcagaggtgg aaactgag gcccagggag chr19:10196518-10196598 49 2.36e-05 acagaggggt aaactgag gttgagagag chr22:19961926-19962006 31 2.36e-05 acagaggaac aaactgag gctcaaatca chr19:11019191-11019271 41 2.36e-05 acagatgaga aaactgag gctcagagag chr11:12170460-12170540 38 2.36e-05 atggatgaag aaactgag gttcaaagag chr16:16215190-16215270 44 2.36e-05 acagataagg aaactgag gcttagagaa chr19:42427279-42427359 32 2.36e-05 acagatgtgg aaactgag gttctgacag chr22:25201856-25201936 14 2.36e-05 aaagatgaga aaactgag gcttggagaA chr4:119606103-119606183 19 2.36e-05 acagatgaca aaactgag gctcacgaag chr11:75248198-75248278 13 2.36e-05 acagatgaga aaactgag gttggccaga chr19:3627416-3627496 13 2.36e-05 agagacgggg aaactgag gctcagagag chr10:50323734-50323814 35 2.36e-05 ccagatgaga aaactgag tttctgcaag chr11:94681281-94681361 2 2.36e-05 t aaactgag ggtgagggag chr9:132099675-132099755 53 2.36e-05 gcagatgggg aaactgag gtttgcggga chr19:3434718-3434798 25 3.62e-05 ccccatccat aaaatggg atcatacccc chr2:232552770-232552850 50 3.62e-05 tctcatctgt aaaatggg catctttagc chr16:4375314-4375394 46 3.62e-05 ttgcatctgt aaaatggg gatgaaacag chr2:240216439-240216519 39 3.62e-05 cctcatctgt aaaatggg gcgatgccac chr7:73476715-73476795 49 3.62e-05 tctcatctgc aaaatggg aatgacaata chr1:25235948-25236028 29 3.62e-05 ccctatctgc aaaatggg gacagtaatc chr5:176924913-176924993 49 3.62e-05 gctactccga aaaatggg acgatcatac chr12:123921703-12392178 49 3.62e-05 cctcctctgt aaaatggg gacaatagcg chrX:48644518-48644598 47 3.62e-05 tctcacctgc aaaatggg tacagccaca chr19:41333929-41334009 59 3.62e-05 tctcatctgt aaaatggg cctgatggca chr11:119039292-11903937 45 3.62e-05 cttcatctgt aaaatggg cctaacaagc chr20:3776503-3776583 30 3.62e-05 ccaggtctgt aaaatggg gTGTCTAACG chr19:42434068-42434148 62 3.62e-05 cctcatctgc aaaatggg acaataatga chr10:73078812-73078892 38 3.62e-05 TTTCTCCTAT AAAATGGG CGCACGCAGG chr16:85462035-85462115 38 3.62e-05 gcttagctgt aaaatggg gcgataatcg chr1:12805761-12805841 63 3.62e-05 cctcatctgt aaaatggg tataataatg chr20:32891410-32891490 57 3.62e-05 cctcatctgt aaaatggg ccaaatgaca chr19:54605747-54605827 43 3.62e-05 cttcgtctgt aaaatggg CTTTCATACA chr1:9689648-9689728 34 3.62e-05 gcctgtctgt aaaatggg gtcatggtct chr16:85362804-85362884 49 3.62e-05 gttcatctgt aaaatggg ggtggacgct chr19:13959069-13959149 40 3.62e-05 acctagctgt aaaatggg catgatagca chr16:85382221-85382301 60 3.62e-05 tcccatctat aaaatggg ttggtcattc chr19:3374433-3374513 5 6.36e-05 GTAC AGAATGAG AGACTGAGGC chr16:85337192-85337272 13 9.12e-05 gttgacagga agactgag tctcagagag chr9:130660944-130661024 4 9.12e-05 agg agactgag gttcagagag chr11:118781686-11878176 67 9.12e-05 ACAGATGAAA AGACTGAG GCCGGC chr7:5590210-5590290 15 9.12e-05 ACAGATGGGA AGACTGAG GTGGGCAGGG chr19:8306690-8306770 63 1.46e-04 tcagatggga caactgag gcccaggaag chr16:3433144-3433224 21 1.46e-04 CCTCTGGTGG ACAATGAG GCTGGAACTC chr19:14494723-14494803 48 1.46e-04 ctctatctgt agaatggg catcaacaca chr19:3059872-3059952 41 1.46e-04 GCCCAGCTTG AGAATGGG TACGACAGTC chrX:153191346-153191426 73 2.17e-04 CGGTTGAGGC CAAATGGG chr16:30968299-30968379 56 2.17e-04 ccccatctgg caaatggg catcctaaGC chr19:4058301-4058381 66 2.17e-04 ccctatctgt caaatggg cagaggt chr12:122250260-12225034 51 2.17e-04 cgtcatctgc caaatggg cctgtgagag chr19:1400741-1400821 13 2.17e-04 CAGGGTGGGA ACACTGAG GCCCGACCCC chr19:10728291-10728371 55 2.17e-04 CATCAAACCT AGACTGGG AACGGACCGC chr15:64231853-64231933 35 2.17e-04 tcctatctgt caaatggg gccaatgaga chr8:142420760-142420840 4 2.17e-04 agc acactgag gcacagagGA chr11:64612708-64612788 30 2.17e-04 gcagatggac acactgag gcttgggaag chr1:55462106-55462186 60 2.17e-04 TTACCTCTGT CAAATGGG CGTGCTCTTT chr12:108522884-10852296 23 2.17e-04 acagaagagg acactgag gccggaaggc chr19:16251933-16252013 23 2.17e-04 cacagatgca gaactgag gctcagagag chr19:17716051-17716131 62 2.17e-04 tgccatctgt caaatggg tgtgttgaac chr2:160944519-160944599 50 2.17e-04 ggaaatggag gaactgag tgattgggag chr7:75436051-75436131 70 2.17e-04 ggcagtgggc aaaatgaa tgc chr17:76142717-76142797 40 2.87e-04 acccatctgc gaaatggg cggatgagag chr19:10542024-10542104 70 2.87e-04 actggcctgt gaaatggg gcc chr20:32379877-32379957 70 2.87e-04 cctcatctgt acaatggg gct chr11:66313918-66313998 61 2.87e-04 tcctgactgt gaaatggg gataGGGCTC chr1:33862631-33862711 54 2.87e-04 cctcatctgt gaaatggg gataatcaca chr17:40713677-40713757 53 2.87e-04 ttccatctgt gaaatggg tacgtggaca chr5:137225344-137225424 45 2.87e-04 ACAGACGGGA AAACTGAA GCCCTGAGCG chr1:23811361-23811441 64 2.87e-04 ccttatctgt acaatggg aagcctgat chr9:130700423-130700503 50 2.87e-04 tcagatggga aaagtgag gctcagagaa chr17:38593608-38593688 20 2.87e-04 acagatggcc aaactgaa gctaaggaac chr1:53833914-53833994 45 3.33e-04 gcttatctgt aaaatgga gctaacaGag chr7:5437129-5437209 50 3.33e-04 gccactctgt aaaatggA CACACAATCC chr19:1512882-1512962 51 3.60e-04 TCCCCCGGAG AAAGTGGG AGGATAGGCA chr19:50309202-50309282 68 3.60e-04 tcccatctgt aaagtggg gccaa chr1:16832995-16833075 65 4.15e-04 taaaatccaa aagctgag ccatgaac chr11:67806858-67806938 16 4.15e-04 acagatgggg aagctgag accacacaac chr19:18451214-18451294 59 4.15e-04 gcagacgggg aaacggag gctGGGGAAT chr20:55989957-55990037 34 4.15e-04 gggaaaacca aagctgag cagatttggc chr9:123477278-123477358 68 4.15e-04 agagatgggg aagctgag gcccT chr12:109025758-10902583 57 4.44e-04 tctcatctgt aaaagggg cactgtccac chr1:40942767-40942847 28 4.79e-04 CGCTGTGAGG AAACGGGG GGCGGCGTGG chr11:69059887-69059967 43 4.79e-04 ctcatctgta aaacgggg acacatcagg chr7:50286303-50286383 2 4.88e-04 g aaaattag tcaaagaaaa chr1:235001324-235001404 66 4.99e-04 aattagccca aaacttag cactcaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34540518-34540598 2.4e-05 24_[+1]_48 chr11:57297826-57297906 2.4e-05 27_[+1]_45 chr7:73081799-73081879 2.4e-05 6_[+1]_66 chr20:31162166-31162246 2.4e-05 3_[+1]_69 chr19:14116345-14116425 2.4e-05 28_[+1]_44 chr19:17444955-17445035 2.4e-05 27_[+1]_45 chr1:12209134-12209214 2.4e-05 48_[+1]_24 chr1:26404151-26404231 2.4e-05 26_[+1]_46 chr19:45541194-45541274 2.4e-05 38_[+1]_34 chr1:41267805-41267885 2.4e-05 17_[+1]_55 chr19:4867965-4868045 2.4e-05 61_[+1]_11 chr20:48961129-48961209 2.4e-05 50_[+1]_22 chr19:10196518-10196598 2.4e-05 48_[+1]_24 chr22:19961926-19962006 2.4e-05 30_[+1]_42 chr19:11019191-11019271 2.4e-05 40_[+1]_32 chr11:12170460-12170540 2.4e-05 37_[+1]_35 chr16:16215190-16215270 2.4e-05 43_[+1]_29 chr19:42427279-42427359 2.4e-05 31_[+1]_41 chr22:25201856-25201936 2.4e-05 13_[+1]_59 chr4:119606103-119606183 2.4e-05 18_[+1]_54 chr11:75248198-75248278 2.4e-05 12_[+1]_60 chr19:3627416-3627496 2.4e-05 12_[+1]_60 chr10:50323734-50323814 2.4e-05 34_[+1]_38 chr11:94681281-94681361 2.4e-05 1_[+1]_71 chr9:132099675-132099755 2.4e-05 52_[+1]_20 chr19:3434718-3434798 3.6e-05 24_[+1]_48 chr2:232552770-232552850 3.6e-05 49_[+1]_23 chr16:4375314-4375394 3.6e-05 45_[+1]_27 chr2:240216439-240216519 3.6e-05 38_[+1]_34 chr7:73476715-73476795 3.6e-05 48_[+1]_24 chr1:25235948-25236028 3.6e-05 28_[+1]_44 chr5:176924913-176924993 3.6e-05 48_[+1]_24 chr12:123921703-12392178 3.6e-05 48_[+1]_24 chrX:48644518-48644598 3.6e-05 46_[+1]_26 chr19:41333929-41334009 3.6e-05 58_[+1]_14 chr11:119039292-11903937 3.6e-05 44_[+1]_28 chr20:3776503-3776583 3.6e-05 29_[+1]_43 chr19:42434068-42434148 3.6e-05 61_[+1]_11 chr10:73078812-73078892 3.6e-05 37_[+1]_35 chr16:85462035-85462115 3.6e-05 37_[+1]_35 chr1:12805761-12805841 3.6e-05 62_[+1]_10 chr20:32891410-32891490 3.6e-05 56_[+1]_16 chr19:54605747-54605827 3.6e-05 42_[+1]_30 chr1:9689648-9689728 3.6e-05 33_[+1]_39 chr16:85362804-85362884 3.6e-05 48_[+1]_24 chr19:13959069-13959149 3.6e-05 39_[+1]_33 chr16:85382221-85382301 3.6e-05 59_[+1]_13 chr19:3374433-3374513 6.4e-05 4_[+1]_68 chr16:85337192-85337272 9.1e-05 12_[+1]_60 chr9:130660944-130661024 9.1e-05 3_[+1]_69 chr11:118781686-11878176 9.1e-05 66_[+1]_6 chr7:5590210-5590290 9.1e-05 14_[+1]_58 chr19:8306690-8306770 0.00015 62_[+1]_10 chr16:3433144-3433224 0.00015 20_[+1]_52 chr19:14494723-14494803 0.00015 47_[+1]_25 chr19:3059872-3059952 0.00015 40_[+1]_32 chrX:153191346-153191426 0.00022 72_[+1] chr16:30968299-30968379 0.00022 55_[+1]_17 chr19:4058301-4058381 0.00022 65_[+1]_7 chr12:122250260-12225034 0.00022 50_[+1]_22 chr19:1400741-1400821 0.00022 12_[+1]_60 chr19:10728291-10728371 0.00022 54_[+1]_18 chr15:64231853-64231933 0.00022 34_[+1]_38 chr8:142420760-142420840 0.00022 3_[+1]_69 chr11:64612708-64612788 0.00022 29_[+1]_43 chr1:55462106-55462186 0.00022 59_[+1]_13 chr12:108522884-10852296 0.00022 22_[+1]_50 chr19:16251933-16252013 0.00022 22_[+1]_50 chr19:17716051-17716131 0.00022 61_[+1]_11 chr2:160944519-160944599 0.00022 49_[+1]_23 chr7:75436051-75436131 0.00022 69_[+1]_3 chr17:76142717-76142797 0.00029 39_[+1]_33 chr19:10542024-10542104 0.00029 69_[+1]_3 chr20:32379877-32379957 0.00029 69_[+1]_3 chr11:66313918-66313998 0.00029 60_[+1]_12 chr1:33862631-33862711 0.00029 53_[+1]_19 chr17:40713677-40713757 0.00029 52_[+1]_20 chr5:137225344-137225424 0.00029 44_[+1]_28 chr1:23811361-23811441 0.00029 63_[+1]_9 chr9:130700423-130700503 0.00029 49_[+1]_23 chr17:38593608-38593688 0.00029 19_[+1]_53 chr1:53833914-53833994 0.00033 44_[+1]_28 chr7:5437129-5437209 0.00033 49_[+1]_23 chr19:1512882-1512962 0.00036 50_[+1]_22 chr19:50309202-50309282 0.00036 67_[+1]_5 chr1:16832995-16833075 0.00042 64_[+1]_8 chr11:67806858-67806938 0.00042 15_[+1]_57 chr19:18451214-18451294 0.00042 58_[+1]_14 chr20:55989957-55990037 0.00042 33_[+1]_39 chr9:123477278-123477358 0.00042 67_[+1]_5 chr12:109025758-10902583 0.00044 56_[+1]_16 chr1:40942767-40942847 0.00048 27_[+1]_45 chr11:69059887-69059967 0.00048 42_[+1]_30 chr7:50286303-50286383 0.00049 1_[+1]_71 chr1:235001324-235001404 0.0005 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMTGRG width=8 seqs=95 chr6:34540518-34540598 ( 25) AAACTGAG 1 chr11:57297826-57297906 ( 28) AAACTGAG 1 chr7:73081799-73081879 ( 7) AAACTGAG 1 chr20:31162166-31162246 ( 4) AAACTGAG 1 chr19:14116345-14116425 ( 29) AAACTGAG 1 chr19:17444955-17445035 ( 28) AAACTGAG 1 chr1:12209134-12209214 ( 49) AAACTGAG 1 chr1:26404151-26404231 ( 27) AAACTGAG 1 chr19:45541194-45541274 ( 39) AAACTGAG 1 chr1:41267805-41267885 ( 18) AAACTGAG 1 chr19:4867965-4868045 ( 62) AAACTGAG 1 chr20:48961129-48961209 ( 51) AAACTGAG 1 chr19:10196518-10196598 ( 49) AAACTGAG 1 chr22:19961926-19962006 ( 31) AAACTGAG 1 chr19:11019191-11019271 ( 41) AAACTGAG 1 chr11:12170460-12170540 ( 38) AAACTGAG 1 chr16:16215190-16215270 ( 44) AAACTGAG 1 chr19:42427279-42427359 ( 32) AAACTGAG 1 chr22:25201856-25201936 ( 14) AAACTGAG 1 chr4:119606103-119606183 ( 19) AAACTGAG 1 chr11:75248198-75248278 ( 13) AAACTGAG 1 chr19:3627416-3627496 ( 13) AAACTGAG 1 chr10:50323734-50323814 ( 35) AAACTGAG 1 chr11:94681281-94681361 ( 2) AAACTGAG 1 chr9:132099675-132099755 ( 53) AAACTGAG 1 chr19:3434718-3434798 ( 25) AAAATGGG 1 chr2:232552770-232552850 ( 50) AAAATGGG 1 chr16:4375314-4375394 ( 46) AAAATGGG 1 chr2:240216439-240216519 ( 39) AAAATGGG 1 chr7:73476715-73476795 ( 49) AAAATGGG 1 chr1:25235948-25236028 ( 29) AAAATGGG 1 chr5:176924913-176924993 ( 49) AAAATGGG 1 chr12:123921703-12392178 ( 49) AAAATGGG 1 chrX:48644518-48644598 ( 47) AAAATGGG 1 chr19:41333929-41334009 ( 59) AAAATGGG 1 chr11:119039292-11903937 ( 45) AAAATGGG 1 chr20:3776503-3776583 ( 30) AAAATGGG 1 chr19:42434068-42434148 ( 62) AAAATGGG 1 chr10:73078812-73078892 ( 38) AAAATGGG 1 chr16:85462035-85462115 ( 38) AAAATGGG 1 chr1:12805761-12805841 ( 63) AAAATGGG 1 chr20:32891410-32891490 ( 57) AAAATGGG 1 chr19:54605747-54605827 ( 43) AAAATGGG 1 chr1:9689648-9689728 ( 34) AAAATGGG 1 chr16:85362804-85362884 ( 49) AAAATGGG 1 chr19:13959069-13959149 ( 40) AAAATGGG 1 chr16:85382221-85382301 ( 60) AAAATGGG 1 chr19:3374433-3374513 ( 5) AGAATGAG 1 chr16:85337192-85337272 ( 13) AGACTGAG 1 chr9:130660944-130661024 ( 4) AGACTGAG 1 chr11:118781686-11878176 ( 67) AGACTGAG 1 chr7:5590210-5590290 ( 15) AGACTGAG 1 chr19:8306690-8306770 ( 63) CAACTGAG 1 chr16:3433144-3433224 ( 21) ACAATGAG 1 chr19:14494723-14494803 ( 48) AGAATGGG 1 chr19:3059872-3059952 ( 41) AGAATGGG 1 chrX:153191346-153191426 ( 73) CAAATGGG 1 chr16:30968299-30968379 ( 56) CAAATGGG 1 chr19:4058301-4058381 ( 66) CAAATGGG 1 chr12:122250260-12225034 ( 51) CAAATGGG 1 chr19:1400741-1400821 ( 13) ACACTGAG 1 chr19:10728291-10728371 ( 55) AGACTGGG 1 chr15:64231853-64231933 ( 35) CAAATGGG 1 chr8:142420760-142420840 ( 4) ACACTGAG 1 chr11:64612708-64612788 ( 30) ACACTGAG 1 chr1:55462106-55462186 ( 60) CAAATGGG 1 chr12:108522884-10852296 ( 23) ACACTGAG 1 chr19:16251933-16252013 ( 23) GAACTGAG 1 chr19:17716051-17716131 ( 62) CAAATGGG 1 chr2:160944519-160944599 ( 50) GAACTGAG 1 chr7:75436051-75436131 ( 70) AAAATGAA 1 chr17:76142717-76142797 ( 40) GAAATGGG 1 chr19:10542024-10542104 ( 70) GAAATGGG 1 chr20:32379877-32379957 ( 70) ACAATGGG 1 chr11:66313918-66313998 ( 61) GAAATGGG 1 chr1:33862631-33862711 ( 54) GAAATGGG 1 chr17:40713677-40713757 ( 53) GAAATGGG 1 chr5:137225344-137225424 ( 45) AAACTGAA 1 chr1:23811361-23811441 ( 64) ACAATGGG 1 chr9:130700423-130700503 ( 50) AAAGTGAG 1 chr17:38593608-38593688 ( 20) AAACTGAA 1 chr1:53833914-53833994 ( 45) AAAATGGA 1 chr7:5437129-5437209 ( 50) AAAATGGA 1 chr19:1512882-1512962 ( 51) AAAGTGGG 1 chr19:50309202-50309282 ( 68) AAAGTGGG 1 chr1:16832995-16833075 ( 65) AAGCTGAG 1 chr11:67806858-67806938 ( 16) AAGCTGAG 1 chr19:18451214-18451294 ( 59) AAACGGAG 1 chr20:55989957-55990037 ( 34) AAGCTGAG 1 chr9:123477278-123477358 ( 68) AAGCTGAG 1 chr12:109025758-10902583 ( 57) AAAAGGGG 1 chr1:40942767-40942847 ( 28) AAACGGGG 1 chr11:69059887-69059967 ( 43) AAACGGGG 1 chr7:50286303-50286383 ( 2) AAAATTAG 1 chr1:235001324-235001404 ( 66) AAACTTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.67311 E= 1.1e-060 186 -169 -186 -1321 186 -188 -167 -1321 205 -1321 -267 -1321 103 87 -308 -1321 -1321 -1321 -267 206 -1321 -1321 187 -345 116 -1321 85 -1321 -214 -1321 182 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 1.1e-060 0.842105 0.084211 0.073684 0.000000 0.842105 0.073684 0.084211 0.000000 0.957895 0.000000 0.042105 0.000000 0.473684 0.494737 0.031579 0.000000 0.000000 0.000000 0.042105 0.957895 0.000000 0.000000 0.978947 0.021053 0.515789 0.000000 0.484211 0.000000 0.052632 0.000000 0.947368 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 regular expression -------------------------------------------------------------------------------- AAA[CA]TG[AG]G -------------------------------------------------------------------------------- Time 4.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCAKTTT MEME-2 width = 8 sites = 88 llr = 681 E-value = 5.8e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C a5a::123 probability G ::::6:11 matrix T :5::4977 bits 2.1 1.9 * ** 1.7 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 ****** (11.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGTTT consensus T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:232552770-232552850 32 1.27e-05 cctccacaac ctcagttt tctcatctgt chr16:4375314-4375394 28 1.27e-05 tcccctgagc ctcagttt ttgcatctgt chr17:56415992-56416072 46 1.27e-05 gtaatggaaa ctcagttt tctcatctgt chr1:25235948-25236028 11 1.27e-05 GGAGCTCAAA ctcagttt ccctatctgc chr19:47017069-47017149 71 1.27e-05 acctctgagc ctcagttt cc chr12:122250260-12225034 33 1.27e-05 ctttctgagt ctcagttt cgtcatctgc chr3:196367019-196367099 68 1.27e-05 gtttctgagc ctcagttt tctca chr19:1512882-1512962 34 1.27e-05 ACCTCTGGGC CTCAGTTT CCCCCGGAGA chr9:130660213-130660293 63 1.27e-05 ctctctgagc ctcagttt cctcatctgt chr17:40713677-40713757 35 1.27e-05 CACACAAGgc ctcagttt ttccatctgt chr1:23811361-23811441 46 1.27e-05 cttctggaac ctcagttt ccttatctgt chr19:54605747-54605827 25 1.27e-05 ttctcccggg ctcagttt cttcgtctgt chr19:14494723-14494803 30 1.27e-05 GGctccaagc ctcagttt ctctatctgt chr16:85362804-85362884 31 1.27e-05 ttttctgcac ctcagttt gttcatctgt chr12:109025758-10902583 39 1.27e-05 cccttcaagc ctcagttt tctcatctgt chr19:17716051-17716131 44 1.27e-05 ctctttaagc ctcagttt tgccatctgt chr19:13959069-13959149 22 1.27e-05 tgctccaggc ctcagttt acctagctgt chr19:3059872-3059952 23 1.27e-05 CTGTCAGTGT CTCAGTTT GCCCAGCTTG chr11:69059887-69059967 24 1.27e-05 gtctcctggc ctcagttt cctcatctgt chr16:85382221-85382301 42 1.27e-05 tccgctcagc ctcagttt tcccatctat chr19:3434718-3434798 7 3.86e-05 gtgtgc cccagttt ccccatccat chr19:16993088-16993168 14 3.86e-05 ttattctagg cccagttt ttagacgttg chr19:14116345-14116425 11 5.15e-05 Aatgattctc cccatttt acaggatgga chr19:18451214-18451294 41 5.15e-05 ATAAGAtgtt cccatttt gcagacgggg chr1:12209134-12209214 31 5.15e-05 gaacaagcct cccatttt acagatggga chr1:26404151-26404231 9 5.15e-05 ctaccatc cccatttt acagatgaga chr19:45541194-45541274 21 5.15e-05 TCCCCTTGAG cccatttt acagatgagg chr20:48961129-48961209 33 5.15e-05 ttgcaacttc cccatttt gcagaggtgg chr19:8306690-8306770 45 5.15e-05 tctagctgta cccatttt tcagatggga chr19:11019191-11019271 23 5.15e-05 tattattgtc cccatttt acagatgaga chr16:30933348-30933428 28 5.15e-05 ccccattgtc cccatttt gcagatgaga chr11:12170460-12170540 20 5.15e-05 tgttattata cccatttt atggatgaag chr17:38593608-38593688 2 5.15e-05 c cccatttt acagatggcc chr16:16215190-16215270 26 5.15e-05 ccttgttgtt cccatttt acagataagg chr4:119606103-119606183 1 5.15e-05 . cccatttt acagatgaca chr12:108522884-10852296 5 5.15e-05 cgaa cccatttt acagaagagg chr12:92787429-92787509 53 9.70e-05 gtggtcatcg cccagttc ccaacagcag chr11:57297826-57297906 10 1.12e-04 cttaaccac cccatttc acggatgtgg chr19:17444955-17445035 10 1.12e-04 gttcttacc cccatttc acaggtgagg chr20:55989957-55990037 10 1.12e-04 ttgactgtg cccatttc acagatggga chr19:4867965-4868045 44 1.12e-04 CCCCAGGTCG CCCATTTC CCCTATGGCC chr19:10196518-10196598 31 1.12e-04 caggattctc cccatttc acagaggggt chr22:19961926-19962006 13 1.12e-04 GAAAAGCGtt cccatttc acagaggaac chr9:123477278-123477358 50 1.12e-04 tgccgccatt cccatttc agagatgggg chr19:42427279-42427359 14 1.12e-04 atgatggatg cccatttc acagatgtgg chr10:50323734-50323814 17 1.12e-04 Tttcaacagc cccatttc ccagatgaga chr1:31359707-31359787 5 1.12e-04 catt cccatttc acagatgggc chr1:23749221-23749301 49 1.12e-04 atttcctctt cccatttc acagaagagg chr19:10542024-10542104 52 1.27e-04 ttctgtcagc ctcagtct actggcctgt chr12:123921703-12392178 31 1.27e-04 gtctccgagc ctcagtct cctcctctgt chr19:4058301-4058381 48 1.27e-04 ctctctgggc ctcagtct ccctatctgt chr19:41333929-41334009 41 1.27e-04 ttttccgagc ctcagtct tctcatctgt chr1:25869771-25869851 23 1.27e-04 tggaggagcc ctcagtct ccccatctgt chr19:46367118-46367198 43 1.27e-04 CGTCGGAAGC CTCAGTCT TCCTGTCTGT chr9:132178005-132178085 73 1.27e-04 tgctttgagc ctcagtct chr7:5437129-5437209 32 1.27e-04 Ttctcagtgc ctcagtct gccactctgt chr20:40228616-40228696 8 1.42e-04 taccctg ctcagtgt gctcttgtga chr19:29630297-29630377 57 1.42e-04 cacctgctgt ctcagtgt attggctttt chr1:228556144-228556224 43 1.73e-04 GCCCACCACT CCCAGTCT GAGAGGActt chr21:45206816-45206896 61 2.03e-04 GCCTGACATG CTCATTGT GCGCCTGACA chr16:11707867-11707947 36 2.48e-04 AGCCGTTGTG CCCATTGT ACAGACGGGG chr1:31315783-31315863 69 2.48e-04 ctctctgagc ctcagttg cccc chr3:14465124-14465204 73 2.48e-04 ctgcctgggc ctcagttg chr7:44835830-44835910 53 2.48e-04 CTGCGTTCGC CTCAGTTG CCCCCTCTGT chr9:132099675-132099755 35 2.48e-04 cgggttcaca cccattgt gcagatgggg chr20:36871397-36871477 7 2.48e-04 ATCCCT CTCAGTTG AGCCTGTCCA chr10:21455576-21455656 21 2.93e-04 tattactgtg cccatttg acagatggag chr11:64612708-64612788 12 2.93e-04 gatggtcacg cccatttg gcagatggac chr2:240216439-240216519 21 3.43e-04 AGctcagcgt ctcagctt cctcatctgt chr16:85462035-85462115 20 3.43e-04 cttaccaagc ctcagctt gcttagctgt chr7:5590210-5590290 59 3.43e-04 CACACCTAAG CTCAGCTT GGGTTCTGGA chr1:15771426-15771506 23 3.79e-04 gagttcaagc cccagtcc caccatttat chr9:125702992-125703072 22 3.79e-04 TTCCATCGTC CCCAGTCC CGGCTGCAGT chr1:31376656-31376736 9 3.79e-04 gactgcag cccagtcc cattagcctg chr20:362433-362513 28 4.45e-04 GCTGGTTCTC CCCAGTGC GCGGCTCCGG chr3:186648080-186648160 59 4.45e-04 TCTAGCATCA CCCAGTGC CTTCATCAAG chr19:3627416-3627496 71 4.45e-04 ACCCAGGCTG CCCAGCTT TG chr17:45726496-45726576 2 4.63e-04 a cccattcc ttaccaagcc chr6:34540518-34540598 7 4.96e-04 gttgtt cccattgc acagatggga chr5:137225344-137225424 27 4.96e-04 GACAGATGGT CCCATTGC ACAGACGGGA chr19:16251933-16252013 6 4.96e-04 ttatg cccattgc acagatgcag chr7:64869095-64869175 7 4.96e-04 acttac cccattgc ttagttcctc chr15:64231853-64231933 17 5.08e-04 AATGCAgtgc ctctgttt tcctatctgt chr19:50309202-50309282 50 5.08e-04 ttctctgagc ctctgttt tcccatctgt chr11:94681281-94681361 67 5.08e-04 ttgaacccat ctctgttt gatcca chr1:228386856-228386936 35 5.99e-04 agctgttaat ctcagtgg gctgcccttg chr10:73078812-73078892 57 6.71e-04 GCACGCAGGC CCCAGCTC AGCGCCAGAA chr7:73735019-73735099 56 7.92e-04 CGTGAATGAG CTCAGCCT TGATAATGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:232552770-232552850 1.3e-05 31_[+2]_41 chr16:4375314-4375394 1.3e-05 27_[+2]_45 chr17:56415992-56416072 1.3e-05 45_[+2]_27 chr1:25235948-25236028 1.3e-05 10_[+2]_62 chr19:47017069-47017149 1.3e-05 70_[+2]_2 chr12:122250260-12225034 1.3e-05 32_[+2]_40 chr3:196367019-196367099 1.3e-05 67_[+2]_5 chr19:1512882-1512962 1.3e-05 33_[+2]_39 chr9:130660213-130660293 1.3e-05 62_[+2]_10 chr17:40713677-40713757 1.3e-05 34_[+2]_38 chr1:23811361-23811441 1.3e-05 45_[+2]_27 chr19:54605747-54605827 1.3e-05 24_[+2]_48 chr19:14494723-14494803 1.3e-05 29_[+2]_43 chr16:85362804-85362884 1.3e-05 30_[+2]_42 chr12:109025758-10902583 1.3e-05 38_[+2]_34 chr19:17716051-17716131 1.3e-05 43_[+2]_29 chr19:13959069-13959149 1.3e-05 21_[+2]_51 chr19:3059872-3059952 1.3e-05 22_[+2]_50 chr11:69059887-69059967 1.3e-05 23_[+2]_49 chr16:85382221-85382301 1.3e-05 41_[+2]_31 chr19:3434718-3434798 3.9e-05 6_[+2]_66 chr19:16993088-16993168 3.9e-05 13_[+2]_59 chr19:14116345-14116425 5.1e-05 10_[+2]_62 chr19:18451214-18451294 5.1e-05 40_[+2]_32 chr1:12209134-12209214 5.1e-05 30_[+2]_42 chr1:26404151-26404231 5.1e-05 8_[+2]_64 chr19:45541194-45541274 5.1e-05 20_[+2]_52 chr20:48961129-48961209 5.1e-05 32_[+2]_40 chr19:8306690-8306770 5.1e-05 44_[+2]_28 chr19:11019191-11019271 5.1e-05 22_[+2]_50 chr16:30933348-30933428 5.1e-05 27_[+2]_45 chr11:12170460-12170540 5.1e-05 19_[+2]_53 chr17:38593608-38593688 5.1e-05 1_[+2]_71 chr16:16215190-16215270 5.1e-05 25_[+2]_47 chr4:119606103-119606183 5.1e-05 [+2]_72 chr12:108522884-10852296 5.1e-05 4_[+2]_68 chr12:92787429-92787509 9.7e-05 52_[+2]_20 chr11:57297826-57297906 0.00011 9_[+2]_63 chr19:17444955-17445035 0.00011 9_[+2]_63 chr20:55989957-55990037 0.00011 9_[+2]_63 chr19:4867965-4868045 0.00011 43_[+2]_29 chr19:10196518-10196598 0.00011 30_[+2]_42 chr22:19961926-19962006 0.00011 12_[+2]_60 chr9:123477278-123477358 0.00011 49_[+2]_23 chr19:42427279-42427359 0.00011 13_[+2]_59 chr10:50323734-50323814 0.00011 16_[+2]_56 chr1:31359707-31359787 0.00011 4_[+2]_68 chr1:23749221-23749301 0.00011 48_[+2]_24 chr19:10542024-10542104 0.00013 51_[+2]_21 chr12:123921703-12392178 0.00013 30_[+2]_42 chr19:4058301-4058381 0.00013 47_[+2]_25 chr19:41333929-41334009 0.00013 40_[+2]_32 chr1:25869771-25869851 0.00013 22_[+2]_50 chr19:46367118-46367198 0.00013 42_[+2]_30 chr9:132178005-132178085 0.00013 72_[+2] chr7:5437129-5437209 0.00013 31_[+2]_41 chr20:40228616-40228696 0.00014 7_[+2]_65 chr19:29630297-29630377 0.00014 56_[+2]_16 chr1:228556144-228556224 0.00017 42_[+2]_30 chr21:45206816-45206896 0.0002 60_[+2]_12 chr16:11707867-11707947 0.00025 35_[+2]_37 chr1:31315783-31315863 0.00025 68_[+2]_4 chr3:14465124-14465204 0.00025 72_[+2] chr7:44835830-44835910 0.00025 52_[+2]_20 chr9:132099675-132099755 0.00025 34_[+2]_38 chr20:36871397-36871477 0.00025 6_[+2]_66 chr10:21455576-21455656 0.00029 20_[+2]_52 chr11:64612708-64612788 0.00029 11_[+2]_61 chr2:240216439-240216519 0.00034 20_[+2]_52 chr16:85462035-85462115 0.00034 19_[+2]_53 chr7:5590210-5590290 0.00034 58_[+2]_14 chr1:15771426-15771506 0.00038 22_[+2]_50 chr9:125702992-125703072 0.00038 21_[+2]_51 chr1:31376656-31376736 0.00038 8_[+2]_64 chr20:362433-362513 0.00045 27_[+2]_45 chr3:186648080-186648160 0.00045 58_[+2]_14 chr19:3627416-3627496 0.00045 70_[+2]_2 chr17:45726496-45726576 0.00046 1_[+2]_71 chr6:34540518-34540598 0.0005 6_[+2]_66 chr5:137225344-137225424 0.0005 26_[+2]_46 chr19:16251933-16252013 0.0005 5_[+2]_67 chr7:64869095-64869175 0.0005 6_[+2]_66 chr15:64231853-64231933 0.00051 16_[+2]_56 chr19:50309202-50309282 0.00051 49_[+2]_23 chr11:94681281-94681361 0.00051 66_[+2]_6 chr1:228386856-228386936 0.0006 34_[+2]_38 chr10:73078812-73078892 0.00067 56_[+2]_16 chr7:73735019-73735099 0.00079 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCAKTTT width=8 seqs=88 chr2:232552770-232552850 ( 32) CTCAGTTT 1 chr16:4375314-4375394 ( 28) CTCAGTTT 1 chr17:56415992-56416072 ( 46) CTCAGTTT 1 chr1:25235948-25236028 ( 11) CTCAGTTT 1 chr19:47017069-47017149 ( 71) CTCAGTTT 1 chr12:122250260-12225034 ( 33) CTCAGTTT 1 chr3:196367019-196367099 ( 68) CTCAGTTT 1 chr19:1512882-1512962 ( 34) CTCAGTTT 1 chr9:130660213-130660293 ( 63) CTCAGTTT 1 chr17:40713677-40713757 ( 35) CTCAGTTT 1 chr1:23811361-23811441 ( 46) CTCAGTTT 1 chr19:54605747-54605827 ( 25) CTCAGTTT 1 chr19:14494723-14494803 ( 30) CTCAGTTT 1 chr16:85362804-85362884 ( 31) CTCAGTTT 1 chr12:109025758-10902583 ( 39) CTCAGTTT 1 chr19:17716051-17716131 ( 44) CTCAGTTT 1 chr19:13959069-13959149 ( 22) CTCAGTTT 1 chr19:3059872-3059952 ( 23) CTCAGTTT 1 chr11:69059887-69059967 ( 24) CTCAGTTT 1 chr16:85382221-85382301 ( 42) CTCAGTTT 1 chr19:3434718-3434798 ( 7) CCCAGTTT 1 chr19:16993088-16993168 ( 14) CCCAGTTT 1 chr19:14116345-14116425 ( 11) CCCATTTT 1 chr19:18451214-18451294 ( 41) CCCATTTT 1 chr1:12209134-12209214 ( 31) CCCATTTT 1 chr1:26404151-26404231 ( 9) CCCATTTT 1 chr19:45541194-45541274 ( 21) CCCATTTT 1 chr20:48961129-48961209 ( 33) CCCATTTT 1 chr19:8306690-8306770 ( 45) CCCATTTT 1 chr19:11019191-11019271 ( 23) CCCATTTT 1 chr16:30933348-30933428 ( 28) CCCATTTT 1 chr11:12170460-12170540 ( 20) CCCATTTT 1 chr17:38593608-38593688 ( 2) CCCATTTT 1 chr16:16215190-16215270 ( 26) CCCATTTT 1 chr4:119606103-119606183 ( 1) CCCATTTT 1 chr12:108522884-10852296 ( 5) CCCATTTT 1 chr12:92787429-92787509 ( 53) CCCAGTTC 1 chr11:57297826-57297906 ( 10) CCCATTTC 1 chr19:17444955-17445035 ( 10) CCCATTTC 1 chr20:55989957-55990037 ( 10) CCCATTTC 1 chr19:4867965-4868045 ( 44) CCCATTTC 1 chr19:10196518-10196598 ( 31) CCCATTTC 1 chr22:19961926-19962006 ( 13) CCCATTTC 1 chr9:123477278-123477358 ( 50) CCCATTTC 1 chr19:42427279-42427359 ( 14) CCCATTTC 1 chr10:50323734-50323814 ( 17) CCCATTTC 1 chr1:31359707-31359787 ( 5) CCCATTTC 1 chr1:23749221-23749301 ( 49) CCCATTTC 1 chr19:10542024-10542104 ( 52) CTCAGTCT 1 chr12:123921703-12392178 ( 31) CTCAGTCT 1 chr19:4058301-4058381 ( 48) CTCAGTCT 1 chr19:41333929-41334009 ( 41) CTCAGTCT 1 chr1:25869771-25869851 ( 23) CTCAGTCT 1 chr19:46367118-46367198 ( 43) CTCAGTCT 1 chr9:132178005-132178085 ( 73) CTCAGTCT 1 chr7:5437129-5437209 ( 32) CTCAGTCT 1 chr20:40228616-40228696 ( 8) CTCAGTGT 1 chr19:29630297-29630377 ( 57) CTCAGTGT 1 chr1:228556144-228556224 ( 43) CCCAGTCT 1 chr21:45206816-45206896 ( 61) CTCATTGT 1 chr16:11707867-11707947 ( 36) CCCATTGT 1 chr1:31315783-31315863 ( 69) CTCAGTTG 1 chr3:14465124-14465204 ( 73) CTCAGTTG 1 chr7:44835830-44835910 ( 53) CTCAGTTG 1 chr9:132099675-132099755 ( 35) CCCATTGT 1 chr20:36871397-36871477 ( 7) CTCAGTTG 1 chr10:21455576-21455656 ( 21) CCCATTTG 1 chr11:64612708-64612788 ( 12) CCCATTTG 1 chr2:240216439-240216519 ( 21) CTCAGCTT 1 chr16:85462035-85462115 ( 20) CTCAGCTT 1 chr7:5590210-5590290 ( 59) CTCAGCTT 1 chr1:15771426-15771506 ( 23) CCCAGTCC 1 chr9:125702992-125703072 ( 22) CCCAGTCC 1 chr1:31376656-31376736 ( 9) CCCAGTCC 1 chr20:362433-362513 ( 28) CCCAGTGC 1 chr3:186648080-186648160 ( 59) CCCAGTGC 1 chr19:3627416-3627496 ( 71) CCCAGCTT 1 chr17:45726496-45726576 ( 2) CCCATTCC 1 chr6:34540518-34540598 ( 7) CCCATTGC 1 chr5:137225344-137225424 ( 27) CCCATTGC 1 chr19:16251933-16252013 ( 6) CCCATTGC 1 chr7:64869095-64869175 ( 7) CCCATTGC 1 chr15:64231853-64231933 ( 17) CTCTGTTT 1 chr19:50309202-50309282 ( 50) CTCTGTTT 1 chr11:94681281-94681361 ( 67) CTCTGTTT 1 chr1:228386856-228386936 ( 35) CTCAGTGG 1 chr10:73078812-73078892 ( 57) CCCAGCTC 1 chr7:73735019-73735099 ( 56) CTCAGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.71923 E= 5.8e-042 -1310 188 -1310 -1310 -1310 92 -1310 109 -1310 188 -1310 -1310 206 -1310 -1310 -275 -1310 -1310 117 79 -1310 -199 -1310 202 -1310 -77 -97 162 -1310 -5 -175 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 5.8e-042 0.000000 1.000000 0.000000 0.000000 0.000000 0.511364 0.000000 0.488636 0.000000 1.000000 0.000000 0.000000 0.965909 0.000000 0.000000 0.034091 0.000000 0.000000 0.602273 0.397727 0.000000 0.068182 0.000000 0.931818 0.000000 0.159091 0.136364 0.704545 0.000000 0.261364 0.079545 0.659091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 regular expression -------------------------------------------------------------------------------- C[CT]CA[GT]TT[TC] -------------------------------------------------------------------------------- Time 8.66 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCMTCTG MEME-3 width = 8 sites = 49 llr = 415 E-value = 5.2e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::6:::: pos.-specific C 9473:a:: probability G :::::::a matrix T 1631a:a: bits 2.1 * * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 * **** Entropy 1.1 *** **** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCATCTG consensus CTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:232552770-232552850 41 1.50e-05 cctcagtttt ctcatctg taaaatgggc chr17:56415992-56416072 55 1.50e-05 actcagtttt ctcatctg tgaaagggga chr2:240216439-240216519 30 1.50e-05 tctcagcttc ctcatctg taaaatgggg chr7:73476715-73476795 40 1.50e-05 cctcagcgtt ctcatctg caaaatggga chr20:32379877-32379957 61 1.50e-05 ccccgtgttc ctcatctg tacaatgggg chr19:41333929-41334009 50 1.50e-05 cctcagtctt ctcatctg taaaatgggc chr19:42434068-42434148 53 1.50e-05 ctcaagtttc ctcatctg caaaatggga chr9:130660213-130660293 72 1.50e-05 cctcagtttc ctcatctg t chr1:33862631-33862711 45 1.50e-05 ccttagtttc ctcatctg tgaaatgggg chr1:12805761-12805841 54 1.50e-05 cttcagtgtc ctcatctg taaaatgggt chr20:32891410-32891490 48 1.50e-05 cctcaatttc ctcatctg taaaatgggc chr12:109025758-10902583 48 1.50e-05 cctcagtttt ctcatctg taaaaggggc chr11:69059887-69059967 33 1.50e-05 cctcagtttc ctcatctg taaaacgggg chr19:3374433-3374513 22 2.77e-05 GAGACTGAGG CTTATCTG AGGTGATCTG chr1:53833914-53833994 36 2.77e-05 ccttagattg cttatctg taaaatggag chr1:23811361-23811441 55 2.77e-05 cctcagtttc cttatctg tacaatggga chr17:76142717-76142797 31 6.30e-05 tcactactta cccatctg cgaaatgggc chr16:30968299-30968379 47 6.30e-05 cctcactctc cccatctg gcaaatgggc chr12:123921703-12392178 40 6.30e-05 cctcagtctc ctcctctg taaaatgggg chr12:129593819-12959389 71 6.30e-05 ccttggttgt ctcctctg ca chr1:25869771-25869851 32 6.30e-05 cctcagtctc cccatctg taaaatgGTC chr19:3146755-3146835 49 6.30e-05 gggccagtcc ctcctctg cccacagccc chr19:50309202-50309282 59 6.30e-05 cctctgtttt cccatctg taaagtgggg chr7:5594235-5594315 38 6.30e-05 CCTCAAAGTG CCCATCTG TATAATGGAG chr2:41722316-41722396 47 6.30e-05 aaatacttag ctcctctg gatccatgat chr19:22130743-22130823 24 6.30e-05 tgccaacgag ctcctctg gacccatggg chr1:25235948-25236028 20 9.29e-05 Actcagtttc cctatctg caaaatgggg chr19:4058301-4058381 57 9.29e-05 cctcagtctc cctatctg tcaaatgggc chr15:64231853-64231933 26 9.29e-05 cctctgtttt cctatctg tcaaatgggg chr1:9689648-9689728 7 9.29e-05 acttca cttctctg agcgcacttg chr7:75436051-75436131 15 9.29e-05 aattaaattc cttctctg ttgcaattcc chr7:44835830-44835910 62 1.14e-04 CCTCAGTTGC CCCCTCTG TGCAATGGGG chr12:109125429-10912550 37 1.14e-04 CTCGCTACGC CCCCTCTG GTCGCACCGA chr19:10534216-10534296 28 1.44e-04 agtgtcttgc cctctctg agccttaatt chr1:31315783-31315863 58 1.44e-04 aagtgctcac cctctctg agcctcagtt chr16:88478753-88478833 47 1.44e-04 cctcgcttaa cctctctg agccCTgctg chrX:48644518-48644598 18 1.44e-04 TCCAGCAGaa cctctctg agcctcactc chr17:45726496-45726576 56 1.44e-04 agttccatac cctctctg ggcttcagtt chr11:119039292-11903937 36 1.44e-04 catcagtttc ttcatctg taaaatgggc chr3:38474500-38474580 68 1.44e-04 atccatgcat ttcatctg aaatc chr16:85362804-85362884 40 1.44e-04 cctcagtttg ttcatctg taaaatgggg chr17:40713677-40713757 44 2.00e-04 cctcagtttt tccatctg tgaaatgggt chr7:64869095-64869175 19 2.00e-04 cattgcttag ttcctctg gatccatggc chr19:29630297-29630377 70 2.12e-04 agtgtattgg cttttctg agc chr19:14494723-14494803 12 2.12e-04 CCTCCTGATC CTTTTCTG GGctccaagc chr22:22813677-22813757 30 2.30e-04 gtgagtggca cccttctg cagaagtaaa chr16:30108407-30108487 33 2.30e-04 gcaagcagca cccttctg cagaagtaaa chr19:703479-703559 41 2.55e-04 CCAGGGCATA TTTCTCTG GTGAAAGAGT chr19:4233522-4233602 51 2.73e-04 tcagggcacg tccctctg cctacagccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:232552770-232552850 1.5e-05 40_[+3]_32 chr17:56415992-56416072 1.5e-05 54_[+3]_18 chr2:240216439-240216519 1.5e-05 29_[+3]_43 chr7:73476715-73476795 1.5e-05 39_[+3]_33 chr20:32379877-32379957 1.5e-05 60_[+3]_12 chr19:41333929-41334009 1.5e-05 49_[+3]_23 chr19:42434068-42434148 1.5e-05 52_[+3]_20 chr9:130660213-130660293 1.5e-05 71_[+3]_1 chr1:33862631-33862711 1.5e-05 44_[+3]_28 chr1:12805761-12805841 1.5e-05 53_[+3]_19 chr20:32891410-32891490 1.5e-05 47_[+3]_25 chr12:109025758-10902583 1.5e-05 47_[+3]_25 chr11:69059887-69059967 1.5e-05 32_[+3]_40 chr19:3374433-3374513 2.8e-05 21_[+3]_51 chr1:53833914-53833994 2.8e-05 35_[+3]_37 chr1:23811361-23811441 2.8e-05 54_[+3]_18 chr17:76142717-76142797 6.3e-05 30_[+3]_42 chr16:30968299-30968379 6.3e-05 46_[+3]_26 chr12:123921703-12392178 6.3e-05 39_[+3]_33 chr12:129593819-12959389 6.3e-05 70_[+3]_2 chr1:25869771-25869851 6.3e-05 31_[+3]_41 chr19:3146755-3146835 6.3e-05 48_[+3]_24 chr19:50309202-50309282 6.3e-05 58_[+3]_14 chr7:5594235-5594315 6.3e-05 37_[+3]_35 chr2:41722316-41722396 6.3e-05 46_[+3]_26 chr19:22130743-22130823 6.3e-05 23_[+3]_49 chr1:25235948-25236028 9.3e-05 19_[+3]_53 chr19:4058301-4058381 9.3e-05 56_[+3]_16 chr15:64231853-64231933 9.3e-05 25_[+3]_47 chr1:9689648-9689728 9.3e-05 6_[+3]_66 chr7:75436051-75436131 9.3e-05 14_[+3]_58 chr7:44835830-44835910 0.00011 61_[+3]_11 chr12:109125429-10912550 0.00011 36_[+3]_36 chr19:10534216-10534296 0.00014 27_[+3]_45 chr1:31315783-31315863 0.00014 57_[+3]_15 chr16:88478753-88478833 0.00014 46_[+3]_26 chrX:48644518-48644598 0.00014 17_[+3]_55 chr17:45726496-45726576 0.00014 55_[+3]_17 chr11:119039292-11903937 0.00014 35_[+3]_37 chr3:38474500-38474580 0.00014 67_[+3]_5 chr16:85362804-85362884 0.00014 39_[+3]_33 chr17:40713677-40713757 0.0002 43_[+3]_29 chr7:64869095-64869175 0.0002 18_[+3]_54 chr19:29630297-29630377 0.00021 69_[+3]_3 chr19:14494723-14494803 0.00021 11_[+3]_61 chr22:22813677-22813757 0.00023 29_[+3]_43 chr16:30108407-30108487 0.00023 32_[+3]_40 chr19:703479-703559 0.00026 40_[+3]_32 chr19:4233522-4233602 0.00027 50_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCMTCTG width=8 seqs=49 chr2:232552770-232552850 ( 41) CTCATCTG 1 chr17:56415992-56416072 ( 55) CTCATCTG 1 chr2:240216439-240216519 ( 30) CTCATCTG 1 chr7:73476715-73476795 ( 40) CTCATCTG 1 chr20:32379877-32379957 ( 61) CTCATCTG 1 chr19:41333929-41334009 ( 50) CTCATCTG 1 chr19:42434068-42434148 ( 53) CTCATCTG 1 chr9:130660213-130660293 ( 72) CTCATCTG 1 chr1:33862631-33862711 ( 45) CTCATCTG 1 chr1:12805761-12805841 ( 54) CTCATCTG 1 chr20:32891410-32891490 ( 48) CTCATCTG 1 chr12:109025758-10902583 ( 48) CTCATCTG 1 chr11:69059887-69059967 ( 33) CTCATCTG 1 chr19:3374433-3374513 ( 22) CTTATCTG 1 chr1:53833914-53833994 ( 36) CTTATCTG 1 chr1:23811361-23811441 ( 55) CTTATCTG 1 chr17:76142717-76142797 ( 31) CCCATCTG 1 chr16:30968299-30968379 ( 47) CCCATCTG 1 chr12:123921703-12392178 ( 40) CTCCTCTG 1 chr12:129593819-12959389 ( 71) CTCCTCTG 1 chr1:25869771-25869851 ( 32) CCCATCTG 1 chr19:3146755-3146835 ( 49) CTCCTCTG 1 chr19:50309202-50309282 ( 59) CCCATCTG 1 chr7:5594235-5594315 ( 38) CCCATCTG 1 chr2:41722316-41722396 ( 47) CTCCTCTG 1 chr19:22130743-22130823 ( 24) CTCCTCTG 1 chr1:25235948-25236028 ( 20) CCTATCTG 1 chr19:4058301-4058381 ( 57) CCTATCTG 1 chr15:64231853-64231933 ( 26) CCTATCTG 1 chr1:9689648-9689728 ( 7) CTTCTCTG 1 chr7:75436051-75436131 ( 15) CTTCTCTG 1 chr7:44835830-44835910 ( 62) CCCCTCTG 1 chr12:109125429-10912550 ( 37) CCCCTCTG 1 chr19:10534216-10534296 ( 28) CCTCTCTG 1 chr1:31315783-31315863 ( 58) CCTCTCTG 1 chr16:88478753-88478833 ( 47) CCTCTCTG 1 chrX:48644518-48644598 ( 18) CCTCTCTG 1 chr17:45726496-45726576 ( 56) CCTCTCTG 1 chr11:119039292-11903937 ( 36) TTCATCTG 1 chr3:38474500-38474580 ( 68) TTCATCTG 1 chr16:85362804-85362884 ( 40) TTCATCTG 1 chr17:40713677-40713757 ( 44) TCCATCTG 1 chr7:64869095-64869175 ( 19) TTCCTCTG 1 chr19:29630297-29630377 ( 70) CTTTTCTG 1 chr19:14494723-14494803 ( 12) CTTTTCTG 1 chr22:22813677-22813757 ( 30) CCCTTCTG 1 chr16:30108407-30108487 ( 33) CCCTTCTG 1 chr19:703479-703559 ( 41) TTTCTCTG 1 chr19:4233522-4233602 ( 51) TCCCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 5.2e-019 -1226 166 -1226 -69 -1226 52 -1226 141 -1226 131 -1226 51 130 36 -1226 -149 -1226 -1226 -1226 212 -1226 188 -1226 -1226 -1226 -1226 -1226 212 -1226 -1226 190 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 5.2e-019 0.000000 0.857143 0.000000 0.142857 0.000000 0.387755 0.000000 0.612245 0.000000 0.673469 0.000000 0.326531 0.571429 0.346939 0.000000 0.081633 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCMTCTG MEME-3 regular expression -------------------------------------------------------------------------------- C[TC][CT][AC]TCTG -------------------------------------------------------------------------------- Time 12.22 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGATGRG MEME-4 width = 8 sites = 65 llr = 498 E-value = 9.6e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:73:52 pos.-specific C a::2:::: probability G ::a11a57 matrix T ::::6::: bits 2.1 * 1.9 *** 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 *** * (11.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATGGG consensus CA AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:34540518-34540598 16 3.19e-05 tcccattgca cagatggg aaaactgagg chr11:67806858-67806938 7 3.19e-05 attcta cagatggg gaagctgaga chr1:12209134-12209214 40 3.19e-05 tcccatttta cagatggg aaaactgagc chr1:26404151-26404231 18 3.19e-05 ccccatttta cagatgag aaaactgagt chr19:45541194-45541274 30 3.19e-05 Gcccatttta cagatgag gaaactgagt chr20:55989957-55990037 19 3.19e-05 gcccatttca cagatggg aaaaccaaag chr19:8306690-8306770 54 3.19e-05 acccattttt cagatggg acaactgagg chr19:11019191-11019271 32 3.19e-05 ccccatttta cagatgag aaaactgagg chr9:130700423-130700503 41 3.19e-05 ttccattttt cagatggg aaaagtgagg chr8:142420760-142420840 46 3.19e-05 Acccatccta cagatgag cacactgagg chr16:30933348-30933428 37 3.19e-05 ccccattttg cagatgag aaaaagcaag chr11:75248198-75248278 4 3.19e-05 tta cagatgag aaaactgagg chr7:5590210-5590290 6 3.19e-05 TTGTA CAGATGGG AAGACTGAGG chr10:50323734-50323814 26 3.19e-05 ccccatttcc cagatgag aaaactgagt chr1:31359707-31359787 14 3.19e-05 tcccatttca cagatggg caaactaaaa chr9:132099675-132099755 44 3.19e-05 acccattgtg cagatggg gaaactgagg chr17:75170863-75170943 37 6.40e-05 tttacttttg cagaaggg tgccgcctgc chr7:66717083-66717163 42 6.40e-05 tttacttctg cagaaggg tgctgcctgc chr10:73078812-73078892 70 6.40e-05 AGCTCAGCGC CAGAAGGG GGA chr1:205125240-205125320 65 6.40e-05 tagggcaatg cagaaggg atatgtgg chr16:10502844-10502924 20 6.40e-05 tttacttctg cagaaggg tgctgctcat chr12:108522884-10852296 14 6.40e-05 acccatttta cagaagag gacactgagg chr1:23749221-23749301 58 6.40e-05 tcccatttca cagaagag gaaactcgag chr19:14116345-14116425 41 9.16e-05 actgaggcct cagatgga caggcacttg chr10:21455576-21455656 30 9.16e-05 gcccatttga cagatgga gaaactgatg chr19:1512882-1512962 67 9.16e-05 GGAGGATAGG CAGATGGA CTTACC chr11:64612708-64612788 21 9.16e-05 gcccatttgg cagatgga cacactgagg chr11:118781686-11878176 58 9.16e-05 ACCCATTGAA CAGATGAA AAGACTGAGG chr20:46150101-46150181 43 9.16e-05 tgcaccttca cagatgga gcaatggtga chr16:11707867-11707947 54 1.29e-04 ACAGACGGGG CAGCTGAG GCTTGTGCAG chr1:39634260-39634340 68 1.29e-04 ctacatttat cagctgag tgacc chr19:4058301-4058381 2 1.29e-04 c cagctgag ctgttcagcc chr11:69239616-69239696 27 1.29e-04 aaatgtcttt cagctgag gaatgatgaa chr20:3776503-3776583 62 1.29e-04 CCGTACAGCC CAGCTGGG TTTAGCAAAC chr19:47017069-47017149 24 1.66e-04 GGGTGGCAAT CAGAGGGG CCGACAGACC chr4:65096594-65096674 34 1.66e-04 cccatggatc cagaggag ctagttgcag chr19:10196518-10196598 40 1.66e-04 ccccatttca cagagggg taaactgagg chr2:6985632-6985712 44 1.66e-04 cccatggatc cagaggag ccagtagggc chr18:77782802-77782882 54 1.66e-04 ctcatggatc cagaggag gtagtatgca chr7:46508527-46508607 34 1.66e-04 cccatggatc cagaggag ctagttggca chr2:69066573-69066653 43 2.31e-04 GGTAGAATAC CAGGTGAG GATGGAGCCT chr19:17444955-17445035 19 2.31e-04 ccccatttca caggtgag gaaactgagg chr6:43902590-43902670 30 2.31e-04 aggaaggtgg cagaagga actcaagccc chr1:228556144-228556224 21 2.31e-04 GCCTGCAGGC CAGGTGGG GCAGGCCCAC chr7:99129107-99129187 44 2.31e-04 CGCGTCCACA CAGGTGAG AAGCCCTACA chr19:16251933-16252013 69 2.31e-04 ggacacacag caggtgag tgag chr19:6292182-6292262 3 2.31e-04 ag cagaagga tagggtggta chr11:17393328-17393408 19 2.31e-04 ggaccttgtg caggtgag cacaagctag chr10:29134076-29134156 59 2.69e-04 gcaggctttg cagcagag agagggtttg chr20:31162166-31162246 40 2.69e-04 gctGGGGGCC CAGCAGAG Cctgtgcctt chr1:226891302-226891382 63 2.69e-04 AGCGGGCCCG CAGCAGAG GCAGTAGCGG chr19:8223417-8223497 37 2.69e-04 GACCTGGCGG CAGCAggg agccacggtg chr16:85382221-85382301 4 3.01e-04 ATc cagctgga caacctctgc chr19:42427279-42427359 23 3.16e-04 gcccatttca cagatgtg gaaactgagg chr17:38593608-38593688 11 4.17e-04 ccccatttta cagatggc caaactgaag chr4:119606103-119606183 10 4.17e-04 cccatttta cagatgac aaaactgagg chr2:31919121-31919201 43 4.17e-04 gccatggatc cagaggaa ctaagatatg chr1:18081784-18081864 7 4.61e-04 ccccag cagcgggg aggttccgct chr20:362433-362513 51 4.93e-04 TCCGGGTTTG CAGGTGGA CGGTGCGCGC chrX:48644518-48644598 10 5.25e-04 GTTCAAATC CAGCAGaa cctctctgag chr12:92787429-92787509 25 5.25e-04 cacacccatc cagcagga agtagctaga chr7:86957780-86957860 53 5.25e-04 aggagctagt cagcagga gtagccatgt chr7:92418047-92418127 63 6.16e-04 ctatggaggg cagaaggc agtgggatgg chr17:45726496-45726576 26 6.78e-04 agccattaac cagctgtg tgaccttgga chr16:16215190-16215270 35 7.05e-04 tcccatttta cagataag gaaactgagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34540518-34540598 3.2e-05 15_[+4]_57 chr11:67806858-67806938 3.2e-05 6_[+4]_66 chr1:12209134-12209214 3.2e-05 39_[+4]_33 chr1:26404151-26404231 3.2e-05 17_[+4]_55 chr19:45541194-45541274 3.2e-05 29_[+4]_43 chr20:55989957-55990037 3.2e-05 18_[+4]_54 chr19:8306690-8306770 3.2e-05 53_[+4]_19 chr19:11019191-11019271 3.2e-05 31_[+4]_41 chr9:130700423-130700503 3.2e-05 40_[+4]_32 chr8:142420760-142420840 3.2e-05 45_[+4]_27 chr16:30933348-30933428 3.2e-05 36_[+4]_36 chr11:75248198-75248278 3.2e-05 3_[+4]_69 chr7:5590210-5590290 3.2e-05 5_[+4]_67 chr10:50323734-50323814 3.2e-05 25_[+4]_47 chr1:31359707-31359787 3.2e-05 13_[+4]_59 chr9:132099675-132099755 3.2e-05 43_[+4]_29 chr17:75170863-75170943 6.4e-05 36_[+4]_36 chr7:66717083-66717163 6.4e-05 41_[+4]_31 chr10:73078812-73078892 6.4e-05 69_[+4]_3 chr1:205125240-205125320 6.4e-05 64_[+4]_8 chr16:10502844-10502924 6.4e-05 19_[+4]_53 chr12:108522884-10852296 6.4e-05 13_[+4]_59 chr1:23749221-23749301 6.4e-05 57_[+4]_15 chr19:14116345-14116425 9.2e-05 40_[+4]_32 chr10:21455576-21455656 9.2e-05 29_[+4]_43 chr19:1512882-1512962 9.2e-05 66_[+4]_6 chr11:64612708-64612788 9.2e-05 20_[+4]_52 chr11:118781686-11878176 9.2e-05 57_[+4]_15 chr20:46150101-46150181 9.2e-05 42_[+4]_30 chr16:11707867-11707947 0.00013 53_[+4]_19 chr1:39634260-39634340 0.00013 67_[+4]_5 chr19:4058301-4058381 0.00013 1_[+4]_71 chr11:69239616-69239696 0.00013 26_[+4]_46 chr20:3776503-3776583 0.00013 61_[+4]_11 chr19:47017069-47017149 0.00017 23_[+4]_49 chr4:65096594-65096674 0.00017 33_[+4]_39 chr19:10196518-10196598 0.00017 39_[+4]_33 chr2:6985632-6985712 0.00017 43_[+4]_29 chr18:77782802-77782882 0.00017 53_[+4]_19 chr7:46508527-46508607 0.00017 33_[+4]_39 chr2:69066573-69066653 0.00023 42_[+4]_30 chr19:17444955-17445035 0.00023 18_[+4]_54 chr6:43902590-43902670 0.00023 29_[+4]_43 chr1:228556144-228556224 0.00023 20_[+4]_52 chr7:99129107-99129187 0.00023 43_[+4]_29 chr19:16251933-16252013 0.00023 68_[+4]_4 chr19:6292182-6292262 0.00023 2_[+4]_70 chr11:17393328-17393408 0.00023 18_[+4]_54 chr10:29134076-29134156 0.00027 58_[+4]_14 chr20:31162166-31162246 0.00027 39_[+4]_33 chr1:226891302-226891382 0.00027 62_[+4]_10 chr19:8223417-8223497 0.00027 36_[+4]_36 chr16:85382221-85382301 0.0003 3_[+4]_69 chr19:42427279-42427359 0.00032 22_[+4]_50 chr17:38593608-38593688 0.00042 10_[+4]_62 chr4:119606103-119606183 0.00042 9_[+4]_63 chr2:31919121-31919201 0.00042 42_[+4]_30 chr1:18081784-18081864 0.00046 6_[+4]_66 chr20:362433-362513 0.00049 50_[+4]_22 chrX:48644518-48644598 0.00053 9_[+4]_63 chr12:92787429-92787509 0.00053 24_[+4]_48 chr7:86957780-86957860 0.00053 52_[+4]_20 chr7:92418047-92418127 0.00062 62_[+4]_10 chr17:45726496-45726576 0.00068 25_[+4]_47 chr16:16215190-16215270 0.00071 34_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGATGRG width=8 seqs=65 chr6:34540518-34540598 ( 16) CAGATGGG 1 chr11:67806858-67806938 ( 7) CAGATGGG 1 chr1:12209134-12209214 ( 40) CAGATGGG 1 chr1:26404151-26404231 ( 18) CAGATGAG 1 chr19:45541194-45541274 ( 30) CAGATGAG 1 chr20:55989957-55990037 ( 19) CAGATGGG 1 chr19:8306690-8306770 ( 54) CAGATGGG 1 chr19:11019191-11019271 ( 32) CAGATGAG 1 chr9:130700423-130700503 ( 41) CAGATGGG 1 chr8:142420760-142420840 ( 46) CAGATGAG 1 chr16:30933348-30933428 ( 37) CAGATGAG 1 chr11:75248198-75248278 ( 4) CAGATGAG 1 chr7:5590210-5590290 ( 6) CAGATGGG 1 chr10:50323734-50323814 ( 26) CAGATGAG 1 chr1:31359707-31359787 ( 14) CAGATGGG 1 chr9:132099675-132099755 ( 44) CAGATGGG 1 chr17:75170863-75170943 ( 37) CAGAAGGG 1 chr7:66717083-66717163 ( 42) CAGAAGGG 1 chr10:73078812-73078892 ( 70) CAGAAGGG 1 chr1:205125240-205125320 ( 65) CAGAAGGG 1 chr16:10502844-10502924 ( 20) CAGAAGGG 1 chr12:108522884-10852296 ( 14) CAGAAGAG 1 chr1:23749221-23749301 ( 58) CAGAAGAG 1 chr19:14116345-14116425 ( 41) CAGATGGA 1 chr10:21455576-21455656 ( 30) CAGATGGA 1 chr19:1512882-1512962 ( 67) CAGATGGA 1 chr11:64612708-64612788 ( 21) CAGATGGA 1 chr11:118781686-11878176 ( 58) CAGATGAA 1 chr20:46150101-46150181 ( 43) CAGATGGA 1 chr16:11707867-11707947 ( 54) CAGCTGAG 1 chr1:39634260-39634340 ( 68) CAGCTGAG 1 chr19:4058301-4058381 ( 2) CAGCTGAG 1 chr11:69239616-69239696 ( 27) CAGCTGAG 1 chr20:3776503-3776583 ( 62) CAGCTGGG 1 chr19:47017069-47017149 ( 24) CAGAGGGG 1 chr4:65096594-65096674 ( 34) CAGAGGAG 1 chr19:10196518-10196598 ( 40) CAGAGGGG 1 chr2:6985632-6985712 ( 44) CAGAGGAG 1 chr18:77782802-77782882 ( 54) CAGAGGAG 1 chr7:46508527-46508607 ( 34) CAGAGGAG 1 chr2:69066573-69066653 ( 43) CAGGTGAG 1 chr19:17444955-17445035 ( 19) CAGGTGAG 1 chr6:43902590-43902670 ( 30) CAGAAGGA 1 chr1:228556144-228556224 ( 21) CAGGTGGG 1 chr7:99129107-99129187 ( 44) CAGGTGAG 1 chr19:16251933-16252013 ( 69) CAGGTGAG 1 chr19:6292182-6292262 ( 3) CAGAAGGA 1 chr11:17393328-17393408 ( 19) CAGGTGAG 1 chr10:29134076-29134156 ( 59) CAGCAGAG 1 chr20:31162166-31162246 ( 40) CAGCAGAG 1 chr1:226891302-226891382 ( 63) CAGCAGAG 1 chr19:8223417-8223497 ( 37) CAGCAGGG 1 chr16:85382221-85382301 ( 4) CAGCTGGA 1 chr19:42427279-42427359 ( 23) CAGATGTG 1 chr17:38593608-38593688 ( 11) CAGATGGC 1 chr4:119606103-119606183 ( 10) CAGATGAC 1 chr2:31919121-31919201 ( 43) CAGAGGAA 1 chr1:18081784-18081864 ( 7) CAGCGGGG 1 chr20:362433-362513 ( 51) CAGGTGGA 1 chrX:48644518-48644598 ( 10) CAGCAGAA 1 chr12:92787429-92787509 ( 25) CAGCAGGA 1 chr7:86957780-86957860 ( 53) CAGCAGGA 1 chr7:92418047-92418127 ( 63) CAGAAGGC 1 chr17:45726496-45726576 ( 26) CAGCTGTG 1 chr16:16215190-16215270 ( 35) CAGATAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.14602 E= 9.6e-015 -1267 188 -1267 -1267 211 -1267 -1267 -1267 -1267 -1267 190 -1267 152 -23 -131 -1267 18 -1267 -112 142 -391 -1267 188 -1267 100 -1267 92 -290 -10 -255 146 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 9.6e-015 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.661538 0.230769 0.107692 0.000000 0.261538 0.000000 0.123077 0.615385 0.015385 0.000000 0.984615 0.000000 0.461538 0.000000 0.507692 0.030769 0.215385 0.046154 0.738462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATGRG MEME-4 regular expression -------------------------------------------------------------------------------- CAG[AC][TA]G[GA][GA] -------------------------------------------------------------------------------- Time 15.68 secs. ******************************************************************************** ******************************************************************************** MOTIF MTCCATGG MEME-5 width = 8 sites = 42 llr = 342 E-value = 3.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6::1a::1 pos.-specific C 42a9:::: probability G :::::1a9 matrix T :8:::9:: bits 2.1 1.9 * 1.7 * * * 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATCCATGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:189238296-189238376 32 1.49e-05 cattaccttc atccatgg attctggggg chr12:51310242-51310322 62 1.49e-05 tcatgcttgc atccatgg gtggcacctg chr10:5207869-5207949 51 1.49e-05 tgacacttgc atccatgg gtgactccta chr7:64869095-64869175 53 1.49e-05 tcacacctgc atccatgg gtgacacctt chr11:17393328-17393408 71 1.49e-05 tcatgctttg atccatgg gc chr19:22327353-22327433 67 1.49e-05 tcatgcttcc atccatgg gtaaca chr19:22130743-22130823 58 1.49e-05 tcatgctcgc atccatgg gtaacatcta chr19:23128521-23128601 70 1.49e-05 tcatgcttgc atccatgg gta chr19:4233522-4233602 68 3.24e-05 gcctacagcc ctccatgg ctccc chr20:48961129-48961209 9 3.24e-05 AACCCCCA CTCcatgg caggggttgc chr19:10196518-10196598 4 3.24e-05 cca ctccatgg tgtagacacc chr19:3146755-3146835 66 3.24e-05 gcccacagcc ctccatgg ctcccaa chr19:10728291-10728371 25 3.24e-05 CTCAAACACC CTCCATGG CTCCCACGTA chr5:173019239-173019319 47 3.24e-05 tcctgcacag ctccatgg acattcacac chr4:65096594-65096674 23 4.99e-05 catgaccttc acccatgg atccagagga chr2:174163421-174163501 11 4.99e-05 catagatgcc acccatgg atgcaagcat chr2:6985632-6985712 33 4.99e-05 catatccttc acccatgg atccagagga chr19:58077917-58077997 10 4.99e-05 ataggtgtc acccatgg atgcaagcat chr7:86957780-86957860 29 4.99e-05 catgaccttc acccatgg atctggagga chr7:46508527-46508607 23 4.99e-05 catgaccttc acccatgg atccagagga chr1:205125240-205125320 36 7.05e-05 ggggtggagc ccccatgg agaacctttg chr18:77782802-77782882 18 7.05e-05 ataggtgcca ccccatgg atacaagtgt chr6:63362728-63362808 11 1.01e-04 cataggtgcc atccatga atgaaagcat chr7:5594235-5594315 1 1.01e-04 . ATCCAGGG TTAGCCCTGC chr3:38474500-38474580 17 1.01e-04 gcagagtttc atccatga gggctccgtc chr2:41722316-41722396 56 1.01e-04 gctcctctgg atccatga tggaggttca chr7:149226351-149226431 73 1.13e-04 tcatgcttgc atcaatgg chr21:30899031-30899111 24 1.49e-04 agtagaagtt ctccatga gggctacacc chr1:228556144-228556224 67 1.49e-04 Acttgcttgc ctccaggg acaggg chr16:85362804-85362884 73 1.49e-04 cgctggctgc ctccaggg chr17:76133556-76133636 24 1.49e-04 CGCCGCACAC CTCCAGGG GGCGCCACTG chr22:18553965-18554045 52 1.49e-04 aactgcacac ctccaggg ggcgccaccc chr8:12974891-12974971 44 1.64e-04 tgcagttaac ctcaatgg tactaccaca chr10:72408382-72408462 30 1.64e-04 tgcagcatga ctcaatgg gtttggagtg chr11:59936908-59936988 30 1.96e-04 tggttacata atgcatgg ggttgtgcac chr2:160944519-160944599 34 1.96e-04 catgaccctt agccatgg aaatggagga chr2:31919121-31919201 32 1.96e-04 tgtgaccctc agccatgg atccagagga chr16:57716813-57716893 7 2.13e-04 CAATGG ATCCCTGG TCCCACCACT chr7:111436892-111436972 43 2.28e-04 gttcatccag ttccatgg cttgcagcac chr19:6292182-6292262 62 2.66e-04 ggccttcccg ctgcatgg gtgaaggttg chr1:228386856-228386936 1 2.99e-04 . atccattg tttccaatga chr16:442037-442117 21 2.99e-04 CACTCTGCAC CTCCCTGG CTGCTGTTtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:189238296-189238376 1.5e-05 31_[+5]_41 chr12:51310242-51310322 1.5e-05 61_[+5]_11 chr10:5207869-5207949 1.5e-05 50_[+5]_22 chr7:64869095-64869175 1.5e-05 52_[+5]_20 chr11:17393328-17393408 1.5e-05 70_[+5]_2 chr19:22327353-22327433 1.5e-05 66_[+5]_6 chr19:22130743-22130823 1.5e-05 57_[+5]_15 chr19:23128521-23128601 1.5e-05 69_[+5]_3 chr19:4233522-4233602 3.2e-05 67_[+5]_5 chr20:48961129-48961209 3.2e-05 8_[+5]_64 chr19:10196518-10196598 3.2e-05 3_[+5]_69 chr19:3146755-3146835 3.2e-05 65_[+5]_7 chr19:10728291-10728371 3.2e-05 24_[+5]_48 chr5:173019239-173019319 3.2e-05 46_[+5]_26 chr4:65096594-65096674 5e-05 22_[+5]_50 chr2:174163421-174163501 5e-05 10_[+5]_62 chr2:6985632-6985712 5e-05 32_[+5]_40 chr19:58077917-58077997 5e-05 9_[+5]_63 chr7:86957780-86957860 5e-05 28_[+5]_44 chr7:46508527-46508607 5e-05 22_[+5]_50 chr1:205125240-205125320 7e-05 35_[+5]_37 chr18:77782802-77782882 7e-05 17_[+5]_55 chr6:63362728-63362808 0.0001 10_[+5]_62 chr7:5594235-5594315 0.0001 [+5]_72 chr3:38474500-38474580 0.0001 16_[+5]_56 chr2:41722316-41722396 0.0001 55_[+5]_17 chr7:149226351-149226431 0.00011 72_[+5] chr21:30899031-30899111 0.00015 23_[+5]_49 chr1:228556144-228556224 0.00015 66_[+5]_6 chr16:85362804-85362884 0.00015 72_[+5] chr17:76133556-76133636 0.00015 23_[+5]_49 chr22:18553965-18554045 0.00015 51_[+5]_21 chr8:12974891-12974971 0.00016 43_[+5]_29 chr10:72408382-72408462 0.00016 29_[+5]_43 chr11:59936908-59936988 0.0002 29_[+5]_43 chr2:160944519-160944599 0.0002 33_[+5]_39 chr2:31919121-31919201 0.0002 31_[+5]_41 chr16:57716813-57716893 0.00021 6_[+5]_66 chr7:111436892-111436972 0.00023 42_[+5]_30 chr19:6292182-6292262 0.00027 61_[+5]_11 chr1:228386856-228386936 0.0003 [+5]_72 chr16:442037-442117 0.0003 20_[+5]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTCCATGG width=8 seqs=42 chr1:189238296-189238376 ( 32) ATCCATGG 1 chr12:51310242-51310322 ( 62) ATCCATGG 1 chr10:5207869-5207949 ( 51) ATCCATGG 1 chr7:64869095-64869175 ( 53) ATCCATGG 1 chr11:17393328-17393408 ( 71) ATCCATGG 1 chr19:22327353-22327433 ( 67) ATCCATGG 1 chr19:22130743-22130823 ( 58) ATCCATGG 1 chr19:23128521-23128601 ( 70) ATCCATGG 1 chr19:4233522-4233602 ( 68) CTCCATGG 1 chr20:48961129-48961209 ( 9) CTCCATGG 1 chr19:10196518-10196598 ( 4) CTCCATGG 1 chr19:3146755-3146835 ( 66) CTCCATGG 1 chr19:10728291-10728371 ( 25) CTCCATGG 1 chr5:173019239-173019319 ( 47) CTCCATGG 1 chr4:65096594-65096674 ( 23) ACCCATGG 1 chr2:174163421-174163501 ( 11) ACCCATGG 1 chr2:6985632-6985712 ( 33) ACCCATGG 1 chr19:58077917-58077997 ( 10) ACCCATGG 1 chr7:86957780-86957860 ( 29) ACCCATGG 1 chr7:46508527-46508607 ( 23) ACCCATGG 1 chr1:205125240-205125320 ( 36) CCCCATGG 1 chr18:77782802-77782882 ( 18) CCCCATGG 1 chr6:63362728-63362808 ( 11) ATCCATGA 1 chr7:5594235-5594315 ( 1) ATCCAGGG 1 chr3:38474500-38474580 ( 17) ATCCATGA 1 chr2:41722316-41722396 ( 56) ATCCATGA 1 chr7:149226351-149226431 ( 73) ATCAATGG 1 chr21:30899031-30899111 ( 24) CTCCATGA 1 chr1:228556144-228556224 ( 67) CTCCAGGG 1 chr16:85362804-85362884 ( 73) CTCCAGGG 1 chr17:76133556-76133636 ( 24) CTCCAGGG 1 chr22:18553965-18554045 ( 52) CTCCAGGG 1 chr8:12974891-12974971 ( 44) CTCAATGG 1 chr10:72408382-72408462 ( 30) CTCAATGG 1 chr11:59936908-59936988 ( 30) ATGCATGG 1 chr2:160944519-160944599 ( 34) AGCCATGG 1 chr2:31919121-31919201 ( 32) AGCCATGG 1 chr16:57716813-57716893 ( 7) ATCCCTGG 1 chr7:111436892-111436972 ( 43) TTCCATGG 1 chr19:6292182-6292262 ( 62) CTGCATGG 1 chr1:228386856-228386936 ( 1) ATCCATTG 1 chr16:442037-442117 ( 21) CTCCCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.06546 E= 3.8e-005 130 58 -1204 -327 -1204 -51 -249 173 -1204 181 -249 -1204 -169 178 -1204 -1204 204 -251 -1204 -1204 -1204 -1204 -117 194 -1204 -1204 187 -327 -128 -1204 176 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 3.8e-005 0.571429 0.404762 0.000000 0.023810 0.000000 0.190476 0.047619 0.761905 0.000000 0.952381 0.047619 0.000000 0.071429 0.928571 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.000000 0.000000 0.119048 0.880952 0.000000 0.000000 0.976190 0.023810 0.095238 0.000000 0.904762 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTCCATGG MEME-5 regular expression -------------------------------------------------------------------------------- [AC]TCCATGG -------------------------------------------------------------------------------- Time 19.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:23128521-23128601 4.24e-03 44_[+5(4.99e-05)]_17_[+5(1.49e-05)]_\ 3 chr19:22130743-22130823 3.20e-03 23_[+3(6.30e-05)]_1_[+5(4.99e-05)]_\ 17_[+5(1.49e-05)]_15 chr19:22327353-22327433 4.94e-03 66_[+5(1.49e-05)]_6 chr3:156393403-156393483 3.69e-01 80 chr7:46508527-46508607 4.86e-03 22_[+5(4.99e-05)]_50 chr2:129226931-129227011 8.55e-01 80 chr5:173019239-173019319 6.68e-02 46_[+5(3.24e-05)]_26 chr7:86957780-86957860 9.71e-03 28_[+5(4.99e-05)]_44 chr19:58077917-58077997 2.39e-01 9_[+5(4.99e-05)]_63 chr19:13791660-13791740 3.24e-01 80 chr11:17393328-17393408 9.46e-04 70_[+5(1.49e-05)]_2 chr15:75434986-75435066 2.39e-01 80 chr20:36871397-36871477 1.21e-02 80 chr2:31919121-31919201 3.24e-02 80 chr7:111436892-111436972 1.65e-01 80 chr2:41722316-41722396 1.01e-02 46_[+3(6.30e-05)]_26 chr6:18824168-18824248 6.37e-01 80 chr4:25225518-25225598 8.93e-01 80 chr17:76270027-76270107 9.81e-01 80 chr21:45206816-45206896 3.72e-01 80 chr16:85382221-85382301 3.03e-05 41_[+2(1.27e-05)]_10_[+1(3.62e-05)]_\ 13 chr7:64869095-64869175 9.85e-04 27_[+5(1.49e-05)]_17_[+5(1.49e-05)]_\ 20 chr10:21486926-21487006 2.35e-01 80 chr9:132099675-132099755 2.32e-05 43_[+4(3.19e-05)]_1_[+1(2.36e-05)]_\ 20 chr16:14383730-14383810 6.75e-01 80 chr22:18553965-18554045 6.33e-02 80 chr11:94681281-94681361 4.21e-03 1_[+1(2.36e-05)]_71 chr20:32535653-32535733 5.34e-01 80 chr10:5207869-5207949 8.03e-02 50_[+5(1.49e-05)]_22 chr1:23749221-23749301 3.49e-03 57_[+4(6.40e-05)]_15 chr18:77782802-77782882 1.36e-02 17_[+5(7.05e-05)]_55 chr1:31359707-31359787 1.83e-04 13_[+4(3.19e-05)]_59 chr7:75436051-75436131 2.92e-03 14_[+3(9.29e-05)]_58 chr17:76133556-76133636 6.94e-02 80 chr11:69059887-69059967 8.46e-05 23_[+2(1.27e-05)]_1_[+3(1.50e-05)]_\ 40 chr9:130285843-130285923 6.11e-01 80 chr19:3059872-3059952 9.03e-04 22_[+2(1.27e-05)]_50 chr2:160944519-160944599 6.15e-02 80 chr10:72408382-72408462 2.18e-01 80 chr16:30108407-30108487 1.61e-02 80 chr19:970803-970883 5.84e-01 80 chr19:6292182-6292262 3.77e-02 80 chr10:50323734-50323814 5.59e-05 25_[+4(3.19e-05)]_1_[+1(2.36e-05)]_\ 38 chr19:16993088-16993168 5.12e-02 13_[+2(3.86e-05)]_59 chr12:51310242-51310322 2.13e-02 61_[+5(1.49e-05)]_11 chr7:5437129-5437209 1.87e-03 80 chr19:13959069-13959149 3.81e-04 21_[+2(1.27e-05)]_10_[+1(3.62e-05)]_\ 33 chr19:17716051-17716131 5.08e-04 43_[+2(1.27e-05)]_29 chr19:16251933-16252013 4.50e-03 80 chr12:111742529-11174260 7.32e-01 80 chrX:131157086-131157166 3.03e-01 80 chr7:5590210-5590290 5.35e-04 5_[+4(3.19e-05)]_1_[+1(9.12e-05)]_\ 58 chr19:703479-703559 8.71e-02 80 chr19:3627416-3627496 3.04e-03 12_[+1(2.36e-05)]_60 chr6:28294272-28294352 1.92e-01 80 chr12:108522884-10852296 1.49e-04 4_[+2(5.15e-05)]_1_[+4(6.40e-05)]_\ 59 chr12:109025758-10902583 5.36e-05 38_[+2(1.27e-05)]_1_[+3(1.50e-05)]_\ 25 chr1:235001324-235001404 7.80e-03 80 chr11:75248198-75248278 1.20e-03 3_[+4(3.19e-05)]_1_[+1(2.36e-05)]_\ 60 chr20:46150101-46150181 2.49e-02 42_[+4(9.16e-05)]_30 chr2:6985632-6985712 1.17e-02 7_[+5(7.05e-05)]_17_[+5(4.99e-05)]_\ 40 chr16:85362804-85362884 2.38e-06 30_[+2(1.27e-05)]_10_[+1(3.62e-05)]_\ 24 chr1:9689648-9689728 2.37e-03 6_[+3(9.29e-05)]_19_[+1(3.62e-05)]_\ 39 chr16:10502844-10502924 1.84e-02 19_[+4(6.40e-05)]_53 chr9:101127652-101127732 6.27e-01 80 chr1:31376656-31376736 2.02e-01 80 chr22:22813677-22813757 2.41e-02 80 chr7:149226351-149226431 1.21e-01 80 chr1:26865171-26865251 2.83e-01 80 chr4:119606103-119606183 1.59e-04 [+2(5.15e-05)]_10_[+1(2.36e-05)]_54 chr8:103540905-103540985 7.77e-01 80 chr2:178937430-178937510 7.33e-01 80 chr1:205125240-205125320 4.88e-03 35_[+5(7.05e-05)]_21_[+4(6.40e-05)]_\ 8 chr19:14494723-14494803 4.22e-04 29_[+2(1.27e-05)]_43 chr11:118781686-11878176 1.52e-03 57_[+4(9.16e-05)]_1_[+1(9.12e-05)]_\ 6 chr9:132178005-132178085 4.56e-02 80 chr1:16471243-16471323 4.69e-01 80 chr22:25201856-25201936 1.04e-02 13_[+1(2.36e-05)]_59 chr19:54605747-54605827 1.17e-04 24_[+2(1.27e-05)]_10_[+1(3.62e-05)]_\ 18_[+1(3.62e-05)]_4 chr19:1812127-1812207 5.95e-02 80 chr19:42427279-42427359 3.84e-04 31_[+1(2.36e-05)]_41 chr16:16215190-16215270 5.51e-04 25_[+2(5.15e-05)]_10_[+1(2.36e-05)]_\ 29 chr7:131021808-131021888 3.23e-01 80 chr7:92418047-92418127 3.63e-02 80 chr17:38593608-38593688 1.68e-03 1_[+2(5.15e-05)]_71 chr19:1775093-1775173 8.09e-01 80 chr3:38474500-38474580 5.50e-03 80 chr11:12170460-12170540 2.26e-03 19_[+2(5.15e-05)]_10_[+1(2.36e-05)]_\ 35 chr16:3433144-3433224 4.81e-02 80 chr16:30933348-30933428 1.36e-04 27_[+2(5.15e-05)]_1_[+4(3.19e-05)]_\ 36 chr7:5594235-5594315 1.94e-03 37_[+3(6.30e-05)]_35 chr16:11659768-11659848 4.33e-01 80 chr7:99129107-99129187 4.65e-02 80 chr10:70621234-70621314 9.71e-01 80 chr1:55462106-55462186 2.28e-02 80 chr6:28688401-28688481 2.83e-01 80 chr7:99091590-99091670 3.29e-01 80 chr11:64612708-64612788 4.68e-04 20_[+4(9.16e-05)]_52 chr1:23689002-23689082 3.58e-01 80 chr9:123477278-123477358 9.59e-03 80 chr8:142420760-142420840 2.26e-03 45_[+4(3.19e-05)]_27 chr9:130700423-130700503 4.32e-03 40_[+4(3.19e-05)]_32 chr1:189238296-189238376 9.52e-03 31_[+5(1.49e-05)]_41 chr19:50309202-50309282 3.96e-03 38_[+3(9.29e-05)]_12_[+3(6.30e-05)]_\ 14 chr8:8216153-8216233 2.94e-01 80 chr1:23811361-23811441 8.54e-05 45_[+2(1.27e-05)]_1_[+3(2.77e-05)]_\ 18 chr20:32891410-32891490 5.82e-05 47_[+3(1.50e-05)]_1_[+1(3.62e-05)]_\ 16 chr1:12805761-12805841 5.71e-05 53_[+3(1.50e-05)]_1_[+1(3.62e-05)]_\ 10 chr15:64231853-64231933 4.68e-04 25_[+3(9.29e-05)]_47 chr3:13856772-13856852 3.54e-01 80 chr5:137225344-137225424 1.06e-02 80 chr19:2933573-2933653 3.36e-01 80 chr20:36966245-36966325 5.51e-01 80 chr16:57716813-57716893 6.64e-02 80 chr19:46367118-46367198 6.70e-03 80 chr3:194048283-194048363 1.00e+00 80 chr3:186648080-186648160 2.23e-01 80 chr16:442037-442117 2.09e-01 80 chr19:10728291-10728371 1.27e-02 24_[+5(3.24e-05)]_48 chr19:9517703-9517783 8.44e-01 80 chr17:40713677-40713757 3.63e-04 34_[+2(1.27e-05)]_38 chr19:3822032-3822112 3.63e-01 80 chr19:3146755-3146835 2.43e-04 48_[+3(6.30e-05)]_9_[+5(3.24e-05)]_\ 7 chr19:11019191-11019271 4.18e-05 22_[+2(5.15e-05)]_1_[+4(3.19e-05)]_\ 1_[+1(2.36e-05)]_32 chr1:33862631-33862711 1.89e-03 44_[+3(1.50e-05)]_28 chr16:85462035-85462115 1.29e-03 37_[+1(3.62e-05)]_35 chr22:19961926-19962006 1.17e-04 30_[+1(2.36e-05)]_42 chr1:25869771-25869851 1.23e-03 31_[+3(6.30e-05)]_41 chr7:128523754-128523834 2.69e-01 80 chr19:8223417-8223497 1.60e-01 80 chr17:25681747-25681827 2.05e-01 80 chr11:66313918-66313998 6.41e-03 80 chr19:10196518-10196598 2.81e-06 3_[+5(3.24e-05)]_37_[+1(2.36e-05)]_\ 24 chr19:8306690-8306770 9.72e-05 44_[+2(5.15e-05)]_1_[+4(3.19e-05)]_\ 19 chr10:73078812-73078892 5.17e-04 37_[+1(3.62e-05)]_24_[+4(6.40e-05)]_\ 3 chr2:174163421-174163501 9.54e-02 10_[+5(4.99e-05)]_62 chr19:18174539-18174619 2.16e-01 80 chr9:125702992-125703072 3.48e-01 80 chr20:48961129-48961209 5.30e-06 8_[+5(3.24e-05)]_16_[+2(5.15e-05)]_\ 10_[+1(2.36e-05)]_22 chr19:4233522-4233602 6.91e-04 67_[+5(3.24e-05)]_5 chr19:4867965-4868045 1.09e-03 61_[+1(2.36e-05)]_11 chr9:130660213-130660293 6.86e-04 62_[+2(1.27e-05)]_1_[+3(1.50e-05)]_\ 1 chr1:226891302-226891382 1.51e-01 80 chr19:42434068-42434148 3.90e-04 52_[+3(1.50e-05)]_1_[+1(3.62e-05)]_\ 11 chr20:3776503-3776583 5.07e-04 29_[+1(3.62e-05)]_43 chr7:75364574-75364654 4.78e-02 80 chr20:55989957-55990037 4.77e-04 18_[+4(3.19e-05)]_54 chr10:73705766-73705846 1.28e-01 80 chr19:1400741-1400821 3.49e-02 80 chr11:119039292-11903937 1.76e-03 44_[+1(3.62e-05)]_28 chr19:1512882-1512962 1.75e-05 33_[+2(1.27e-05)]_25_[+4(9.16e-05)]_\ 6 chr19:48854853-48854933 1.54e-01 80 chr17:17743316-17743396 7.80e-01 80 chr7:127835054-127835134 4.16e-01 80 chr19:41333929-41334009 7.08e-05 49_[+3(1.50e-05)]_1_[+1(3.62e-05)]_\ 14 chr17:48217472-48217552 1.89e-01 80 chr12:109125429-10912550 1.71e-01 80 chr1:228556144-228556224 7.06e-04 80 chr14:23120443-23120523 4.27e-01 80 chr1:53833914-53833994 2.96e-03 35_[+3(2.77e-05)]_37 chr7:44835830-44835910 3.16e-03 80 chr1:168421753-168421833 8.32e-01 80 chr20:362433-362513 2.13e-02 80 chr12:92787429-92787509 1.66e-02 52_[+2(9.70e-05)]_20 chr1:41267805-41267885 2.43e-02 17_[+1(2.36e-05)]_55 chr7:66717083-66717163 9.37e-02 41_[+4(6.40e-05)]_31 chr7:50286303-50286383 7.22e-02 80 chr3:196367019-196367099 4.61e-03 67_[+2(1.27e-05)]_5 chr12:122250260-12225034 1.55e-04 32_[+2(1.27e-05)]_40 chr19:45541194-45541274 1.63e-05 20_[+2(5.15e-05)]_1_[+4(3.19e-05)]_\ 1_[+1(2.36e-05)]_34 chr6:43902590-43902670 4.20e-02 80 chr2:113808603-113808683 2.04e-01 80 chr4:65096594-65096674 3.54e-03 22_[+5(4.99e-05)]_50 chr17:45726496-45726576 4.15e-03 80 chr1:26404151-26404231 4.18e-05 8_[+2(5.15e-05)]_1_[+4(3.19e-05)]_1_\ [+1(2.36e-05)]_46 chr11:69239616-69239696 2.12e-02 80 chr3:14465124-14465204 5.23e-02 80 chr11:695562-695642 8.17e-01 80 chr10:21455576-21455656 2.61e-03 29_[+4(9.16e-05)]_43 chr16:20758795-20758875 2.20e-01 80 chr2:38742965-38743045 8.74e-01 80 chrX:48644518-48644598 2.79e-04 46_[+1(3.62e-05)]_26 chr1:12209134-12209214 1.89e-05 30_[+2(5.15e-05)]_1_[+4(3.19e-05)]_\ 1_[+1(2.36e-05)]_24 chr12:129593819-12959389 7.79e-02 70_[+3(6.30e-05)]_2 chr19:4058301-4058381 3.10e-05 56_[+3(9.29e-05)]_16 chr19:47017069-47017149 2.54e-04 70_[+2(1.27e-05)]_2 chr19:18451214-18451294 1.03e-02 40_[+2(5.15e-05)]_32 chr11:67806858-67806938 6.33e-03 6_[+4(3.19e-05)]_66 chr12:123921703-12392178 3.02e-05 39_[+3(6.30e-05)]_1_[+1(3.62e-05)]_\ 24 chr19:17444955-17445035 3.62e-04 27_[+1(2.36e-05)]_45 chr5:176924913-176924993 3.12e-02 48_[+1(3.62e-05)]_24 chr11:67275376-67275456 1.98e-01 80 chr20:44834850-44834930 1.03e-01 80 chr19:14116345-14116425 8.47e-05 10_[+2(5.15e-05)]_10_[+1(2.36e-05)]_\ 4_[+4(9.16e-05)]_32 chr21:39601338-39601418 1.30e-01 80 chr1:25235948-25236028 9.32e-06 10_[+2(1.27e-05)]_1_[+3(9.29e-05)]_\ 1_[+1(3.62e-05)]_44 chr15:56524419-56524499 3.53e-01 80 chr8:124702699-124702779 1.19e-01 80 chr16:9085990-9086070 2.91e-01 80 chr20:32379877-32379957 1.82e-03 40_[+3(9.29e-05)]_12_[+3(1.50e-05)]_\ 12 chr1:18081784-18081864 2.70e-01 80 chr1:40942767-40942847 2.76e-01 80 chr21:30899031-30899111 2.12e-01 80 chr1:39634260-39634340 4.31e-02 80 chr19:3374433-3374513 1.69e-03 4_[+1(6.36e-05)]_[+1(9.12e-05)]_1_\ [+3(2.77e-05)]_51 chr8:12974891-12974971 4.50e-02 80 chr19:29630297-29630377 4.86e-02 80 chr16:88478753-88478833 1.42e-01 80 chr7:73476715-73476795 4.52e-04 39_[+3(1.50e-05)]_1_[+1(3.62e-05)]_\ 24 chr1:228386856-228386936 1.82e-03 80 chr9:130660944-130661024 5.14e-02 3_[+1(9.12e-05)]_69 chr20:31162166-31162246 9.73e-05 3_[+1(2.36e-05)]_69 chr2:69066573-69066653 8.81e-02 80 chr9:37382277-37382357 2.80e-01 80 chr10:72431675-72431755 1.99e-01 80 chr16:30968299-30968379 2.12e-03 46_[+3(6.30e-05)]_26 chr17:72433959-72434039 2.36e-01 80 chr7:73081799-73081879 6.84e-02 6_[+1(2.36e-05)]_66 chr1:31315783-31315863 3.85e-02 80 chr19:36400031-36400111 3.21e-01 80 chr19:10542024-10542104 2.03e-02 80 chr19:38146989-38147069 6.67e-01 80 chr11:57297826-57297906 3.12e-03 27_[+1(2.36e-05)]_45 chr2:240216439-240216519 7.92e-05 29_[+3(1.50e-05)]_1_[+1(3.62e-05)]_\ 34 chr10:58130665-58130745 3.44e-01 80 chr10:29134076-29134156 4.41e-01 80 chr17:56415992-56416072 2.43e-04 45_[+2(1.27e-05)]_1_[+3(1.50e-05)]_\ 18 chr1:16832995-16833075 2.35e-02 80 chr17:76142717-76142797 2.18e-03 30_[+3(6.30e-05)]_42 chr16:85337192-85337272 2.69e-02 12_[+1(9.12e-05)]_60 chr19:10534216-10534296 6.27e-02 80 chr16:4375314-4375394 2.11e-04 27_[+2(1.27e-05)]_10_[+1(3.62e-05)]_\ 27 chr7:2442713-2442793 7.29e-01 80 chr1:15771426-15771506 9.20e-02 80 chr17:75170863-75170943 1.16e-01 36_[+4(6.40e-05)]_36 chr1:20486669-20486749 1.11e-01 80 chr7:73735019-73735099 2.00e-01 80 chr6:63362728-63362808 1.93e-01 80 chr19:45945836-45945916 3.77e-01 80 chr6:34540518-34540598 4.37e-05 15_[+4(3.19e-05)]_1_[+1(2.36e-05)]_\ 31_[+4(6.40e-05)]_9 chr17:56743886-56743966 5.30e-01 80 chrX:153191346-153191426 9.92e-02 80 chr20:40228616-40228696 3.27e-02 80 chr19:52158167-52158247 3.55e-01 80 chr2:232552770-232552850 5.45e-06 31_[+2(1.27e-05)]_1_[+3(1.50e-05)]_\ 1_[+1(3.62e-05)]_23 chr19:3434718-3434798 4.62e-04 6_[+2(3.86e-05)]_10_[+1(3.62e-05)]_\ 48 chr16:11707867-11707947 9.76e-03 80 chr1:230303239-230303319 5.00e-01 80 chr11:59936908-59936988 3.17e-01 80 chr19:49122900-49122980 9.12e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************