******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/BRF2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:7515215-7515295 1.0000 80 chr22:22883054-22883134 1.0000 80 chr22:21438944-21439024 1.0000 80 chr7:106620048-106620128 1.0000 80 chr4:190895866-190895946 1.0000 80 chr13:93957551-93957631 1.0000 80 chr22:20864772-20864852 1.0000 80 chr1:43595159-43595239 1.0000 80 chr7:105190767-105190847 1.0000 80 chr4:6677202-6677282 1.0000 80 chr13:90583499-90583579 1.0000 80 chr13:81178062-81178142 1.0000 80 chr2:172917247-172917327 1.0000 80 chr22:21167136-21167216 1.0000 80 chr20:26210945-26211025 1.0000 80 chr13:91844062-91844142 1.0000 80 chr6:26339840-26339920 1.0000 80 chr10:127613996-12761407 1.0000 80 chr20:29611089-29611169 1.0000 80 chr22:23172572-23172652 1.0000 80 chr13:93908229-93908309 1.0000 80 chr13:93932262-93932342 1.0000 80 chr22:21951758-21951838 1.0000 80 chr1:173273613-173273693 1.0000 80 chr21:31241306-31241386 1.0000 80 chr2:169925992-169926072 1.0000 80 chr5:34526057-34526137 1.0000 80 chr6:157713888-157713968 1.0000 80 chr22:17155045-17155125 1.0000 80 chr9:125896704-125896784 1.0000 80 chr6:158232015-158232095 1.0000 80 chr7:145765074-145765154 1.0000 80 chr3:46532703-46532783 1.0000 80 chr13:91392500-91392580 1.0000 80 chr1:246308348-246308428 1.0000 80 chr11:68277899-68277979 1.0000 80 chr22:19825165-19825245 1.0000 80 chr1:41353544-41353624 1.0000 80 chr13:93854541-93854621 1.0000 80 chr1:198157640-198157720 1.0000 80 chr13:90976508-90976588 1.0000 80 chr6:2962668-2962748 1.0000 80 chr6:20217008-20217088 1.0000 80 chr7:158640230-158640310 1.0000 80 chr13:91807799-91807879 1.0000 80 chr22:22205875-22205955 1.0000 80 chr13:91288709-91288789 1.0000 80 chr6:88443728-88443808 1.0000 80 chr10:127597875-12759795 1.0000 80 chr7:135927874-135927954 1.0000 80 chr10:52387552-52387632 1.0000 80 chr1:51697072-51697152 1.0000 80 chr16:69629262-69629342 1.0000 80 chr6:15314784-15314864 1.0000 80 chr15:40181042-40181122 1.0000 80 chr22:22912369-22912449 1.0000 80 chr2:172041940-172042020 1.0000 80 chr7:133043071-133043151 1.0000 80 chr16:84780176-84780256 1.0000 80 chr1:213300672-213300752 1.0000 80 chr2:98264071-98264151 1.0000 80 chr21:15731320-15731400 1.0000 80 chr1:201546242-201546322 1.0000 80 chr12:54810451-54810531 1.0000 80 chr7:110041359-110041439 1.0000 80 chr22:19233049-19233129 1.0000 80 chr21:36981973-36982053 1.0000 80 chr22:22833936-22834016 1.0000 80 chr10:127614959-12761503 1.0000 80 chr21:35450420-35450500 1.0000 80 chr13:93036444-93036524 1.0000 80 chr10:70165495-70165575 1.0000 80 chr13:91570416-91570496 1.0000 80 chr21:36278546-36278626 1.0000 80 chr22:22178020-22178100 1.0000 80 chr13:92996694-92996774 1.0000 80 chr3:139064185-139064265 1.0000 80 chr3:138372914-138372994 1.0000 80 chr2:152147224-152147304 1.0000 80 chr1:145102726-145102806 1.0000 80 chr7:120825722-120825802 1.0000 80 chr1:182415653-182415733 1.0000 80 chr15:68143149-68143229 1.0000 80 chr7:105433008-105433088 1.0000 80 chr11:32488058-32488138 1.0000 80 chr7:102741625-102741705 1.0000 80 chr13:93056589-93056669 1.0000 80 chr13:92472749-92472829 1.0000 80 chr1:174415196-174415276 1.0000 80 chr1:166406403-166406483 1.0000 80 chr2:172014681-172014761 1.0000 80 chr6:7413420-7413500 1.0000 80 chr5:94887342-94887422 1.0000 80 chr20:30649582-30649662 1.0000 80 chr2:70232091-70232171 1.0000 80 chr18:9473431-9473511 1.0000 80 chr7:112839423-112839503 1.0000 80 chr6:15891100-15891180 1.0000 80 chr17:45249333-45249413 1.0000 80 chr9:127622845-127622925 1.0000 80 chr6:37784741-37784821 1.0000 80 chr1:143534934-143535014 1.0000 80 chr6:154519411-154519491 1.0000 80 chr13:93183821-93183901 1.0000 80 chr1:119610684-119610764 1.0000 80 chr22:22497924-22498004 1.0000 80 chr1:12512967-12513047 1.0000 80 chr13:91367545-91367625 1.0000 80 chr1:169804028-169804108 1.0000 80 chr5:89822539-89822619 1.0000 80 chr2:26497008-26497088 1.0000 80 chr2:55546022-55546102 1.0000 80 chr6:36998829-36998909 1.0000 80 chr2:183879682-183879762 1.0000 80 chr22:23388669-23388749 1.0000 80 chr9:99615947-99616027 1.0000 80 chr7:133633196-133633276 1.0000 80 chr13:91128842-91128922 1.0000 80 chr1:111499449-111499529 1.0000 80 chr19:52042910-52042990 1.0000 80 chr21:39457569-39457649 1.0000 80 chr5:112092693-112092773 1.0000 80 chr7:64692080-64692160 1.0000 80 chr7:92362115-92362195 1.0000 80 chr4:190491462-190491542 1.0000 80 chr5:130782858-130782938 1.0000 80 chr21:16113741-16113821 1.0000 80 chr1:45362697-45362777 1.0000 80 chr6:14510533-14510613 1.0000 80 chr22:22857721-22857801 1.0000 80 chr21:11174132-11174212 1.0000 80 chr4:40198488-40198568 1.0000 80 chr7:132763676-132763756 1.0000 80 chr2:170593206-170593286 1.0000 80 chr6:148545278-148545358 1.0000 80 chr7:148398952-148399032 1.0000 80 chr1:86149994-86150074 1.0000 80 chr13:91460473-91460553 1.0000 80 chr13:91857803-91857883 1.0000 80 chr13:81257695-81257775 1.0000 80 chr18:9509001-9509081 1.0000 80 chr2:69585008-69585088 1.0000 80 chr7:133232040-133232120 1.0000 80 chr6:13353088-13353168 1.0000 80 chr22:23060377-23060457 1.0000 80 chr7:105995361-105995441 1.0000 80 chr10:17553393-17553473 1.0000 80 chr13:81351648-81351728 1.0000 80 chr15:20566535-20566615 1.0000 80 chr10:81235790-81235870 1.0000 80 chr13:92999568-92999648 1.0000 80 chr10:74006031-74006111 1.0000 80 chr6:17964398-17964478 1.0000 80 chr21:30679511-30679591 1.0000 80 chr9:115264961-115265041 1.0000 80 chr7:105227064-105227144 1.0000 80 chr18:34390214-34390294 1.0000 80 chr7:77115215-77115295 1.0000 80 chr1:8674793-8674873 1.0000 80 chr13:92245445-92245525 1.0000 80 chr7:105400760-105400840 1.0000 80 chr3:60541542-60541622 1.0000 80 chr2:62245781-62245861 1.0000 80 chr2:169774181-169774261 1.0000 80 chr11:118255336-11825541 1.0000 80 chr5:149177913-149177993 1.0000 80 chr7:86547697-86547777 1.0000 80 chr6:7769544-7769624 1.0000 80 chr13:91759990-91760070 1.0000 80 chr1:184003140-184003220 1.0000 80 chr17:37057810-37057890 1.0000 80 chr22:21459318-21459398 1.0000 80 chr22:22824020-22824100 1.0000 80 chr13:91190378-91190458 1.0000 80 chr7:129304942-129305022 1.0000 80 chr1:58902870-58902950 1.0000 80 chr22:22140997-22141077 1.0000 80 chr10:127575784-12757586 1.0000 80 chr2:231576980-231577060 1.0000 80 chr21:31151324-31151404 1.0000 80 chr13:92270943-92271023 1.0000 80 chr22:21174973-21175053 1.0000 80 chr17:29792347-29792427 1.0000 80 chr21:38250332-38250412 1.0000 80 chr15:23072796-23072876 1.0000 80 chr10:127602399-12760247 1.0000 80 chr22:17298314-17298394 1.0000 80 chr5:27043039-27043119 1.0000 80 chr13:90468205-90468285 1.0000 80 chr8:59564315-59564395 1.0000 80 chr6:111198349-111198429 1.0000 80 chr12:131460952-13146103 1.0000 80 chr1:112153129-112153209 1.0000 80 chr10:77469197-77469277 1.0000 80 chr7:106513125-106513205 1.0000 80 chr5:53291541-53291621 1.0000 80 chr22:23121133-23121213 1.0000 80 chr11:125760973-12576105 1.0000 80 chr20:61166008-61166088 1.0000 80 chr4:127720762-127720842 1.0000 80 chr1:39907134-39907214 1.0000 80 chr13:108641522-10864160 1.0000 80 chr1:228453530-228453610 1.0000 80 chr7:115886457-115886537 1.0000 80 chr10:47062789-47062869 1.0000 80 chr7:106302980-106303060 1.0000 80 chr6:20638323-20638403 1.0000 80 chr1:16887197-16887277 1.0000 80 chr16:79858290-79858370 1.0000 80 chr1:180831420-180831500 1.0000 80 chr1:162438003-162438083 1.0000 80 chr12:93637038-93637118 1.0000 80 chr18:23112791-23112871 1.0000 80 chr13:93165243-93165323 1.0000 80 chr1:33257684-33257764 1.0000 80 chr7:112490417-112490497 1.0000 80 chr13:92066839-92066919 1.0000 80 chr5:126216845-126216925 1.0000 80 chr13:91534544-91534624 1.0000 80 chr9:114190368-114190448 1.0000 80 chr1:10369875-10369955 1.0000 80 chr2:150257834-150257914 1.0000 80 chr6:37271573-37271653 1.0000 80 chr13:91646137-91646217 1.0000 80 chr2:178580644-178580724 1.0000 80 chr13:91015133-91015213 1.0000 80 chr17:40612911-40612991 1.0000 80 chr2:109220766-109220846 1.0000 80 chr6:14451407-14451487 1.0000 80 chr7:95201126-95201206 1.0000 80 chr7:108458501-108458581 1.0000 80 chr22:21191384-21191464 1.0000 80 chr7:105816186-105816266 1.0000 80 chr13:90491104-90491184 1.0000 80 chr5:39358529-39358609 1.0000 80 chr20:37380374-37380454 1.0000 80 chr7:120623125-120623205 1.0000 80 chr1:53209286-53209366 1.0000 80 chr16:20929297-20929377 1.0000 80 chr2:170821419-170821499 1.0000 80 chr21:11039161-11039241 1.0000 80 chr4:151234685-151234765 1.0000 80 chr7:111132428-111132508 1.0000 80 chr1:182178218-182178298 1.0000 80 chr7:139703774-139703854 1.0000 80 chr1:145074908-145074988 1.0000 80 chr10:76187698-76187778 1.0000 80 chr13:92099999-92100079 1.0000 80 chr22:23175449-23175529 1.0000 80 chr22:22154029-22154109 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_BRF2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/BRF2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.278 C 0.22 G 0.219 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.278 C 0.22 G 0.219 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SAGSCTGG MEME-1 width = 8 sites = 15 llr = 146 E-value = 5.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C 7::77::: probability G 3:a3::aa matrix T ::::3a:: bits 2.2 * ** 2.0 * ** 1.8 ** *** 1.5 ** *** Relative 1.3 ******** Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCTGG consensus G GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:53209286-53209366 72 8.80e-06 tactgtactc cagcctgg g chr1:166406403-166406483 61 8.80e-06 cacgccactg cagcctgg gtgacagcaa chr22:22205875-22205955 27 8.80e-06 cactgcactc cagcctgg gccacagagc chr21:31241306-31241386 17 8.80e-06 TTAAACAAGA CAGCCTGG CATACAGTTT chr22:22154029-22154109 54 2.63e-05 ccacgttggc caggctgg tctcgaactc chr21:38250332-38250412 73 2.63e-05 tgaacttctt gagcctgg chr22:22857721-22857801 14 2.63e-05 TGCCTAGTAA CAGGCTGG TATAACCCGC chr1:45362697-45362777 35 2.63e-05 GAGGGAAGAA GAGCCTGG AACTGGGCAG chr1:246308348-246308428 11 2.63e-05 ctgtgttgct caggctgg agtacagtgg chr1:33257684-33257764 54 4.64e-05 CAGGTTctgg gaggctgg agacctgggc chr2:26497008-26497088 60 4.64e-05 GCACGTAAGG CAGCTTGG CTTTTTAAAA chr21:36981973-36982053 9 4.64e-05 CGAATCTT CAGCTTGG CTACAAAATA chr10:127597875-12759795 7 4.64e-05 atcttg gaggctgg ctgccacaGA chr2:172917247-172917327 50 4.64e-05 ATGGTATGGC CAGCTTGG CTTCCCAGGC chr1:184003140-184003220 11 6.89e-05 ATGTTGCATA GAGCTTGG GAATGAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:53209286-53209366 8.8e-06 71_[+1]_1 chr1:166406403-166406483 8.8e-06 60_[+1]_12 chr22:22205875-22205955 8.8e-06 26_[+1]_46 chr21:31241306-31241386 8.8e-06 16_[+1]_56 chr22:22154029-22154109 2.6e-05 53_[+1]_19 chr21:38250332-38250412 2.6e-05 72_[+1] chr22:22857721-22857801 2.6e-05 13_[+1]_59 chr1:45362697-45362777 2.6e-05 34_[+1]_38 chr1:246308348-246308428 2.6e-05 10_[+1]_62 chr1:33257684-33257764 4.6e-05 53_[+1]_19 chr2:26497008-26497088 4.6e-05 59_[+1]_13 chr21:36981973-36982053 4.6e-05 8_[+1]_64 chr10:127597875-12759795 4.6e-05 6_[+1]_66 chr2:172917247-172917327 4.6e-05 49_[+1]_23 chr1:184003140-184003220 6.9e-05 10_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGSCTGG width=8 seqs=15 chr1:53209286-53209366 ( 72) CAGCCTGG 1 chr1:166406403-166406483 ( 61) CAGCCTGG 1 chr22:22205875-22205955 ( 27) CAGCCTGG 1 chr21:31241306-31241386 ( 17) CAGCCTGG 1 chr22:22154029-22154109 ( 54) CAGGCTGG 1 chr21:38250332-38250412 ( 73) GAGCCTGG 1 chr22:22857721-22857801 ( 14) CAGGCTGG 1 chr1:45362697-45362777 ( 35) GAGCCTGG 1 chr1:246308348-246308428 ( 11) CAGGCTGG 1 chr1:33257684-33257764 ( 54) GAGGCTGG 1 chr2:26497008-26497088 ( 60) CAGCTTGG 1 chr21:36981973-36982053 ( 9) CAGCTTGG 1 chr10:127597875-12759795 ( 7) GAGGCTGG 1 chr2:172917247-172917327 ( 50) CAGCTTGG 1 chr1:184003140-184003220 ( 11) GAGCTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 5.5e+001 -1055 160 61 -1055 185 -1055 -1055 -1055 -1055 -1055 219 -1055 -1055 160 61 -1055 -1055 173 -1055 -8 -1055 -1055 -1055 182 -1055 -1055 219 -1055 -1055 -1055 219 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.5e+001 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.733333 0.000000 0.266667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSCTGG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]AG[CG][CT]TGG -------------------------------------------------------------------------------- Time 4.95 secs. ******************************************************************************** ******************************************************************************** MOTIF AGSCCWGG MEME-2 width = 8 sites = 19 llr = 171 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7:2::5:: pos.-specific C ::39a::: probability G 3a51::aa matrix T :::::5:: bits 2.2 * * ** 2.0 * * ** 1.8 * ** ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 ** ** ** (13.0 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGCCTGG consensus G C A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:91534544-91534624 5 8.76e-06 TTGG AGGCCTGG AGAAAATCGG chr12:131460952-13146103 73 8.76e-06 tcagtggaca aggcctgg chr1:58902870-58902950 44 8.76e-06 gtcttgggag aggcctgg gaacctgcat chr7:112839423-112839503 34 8.76e-06 ttctaagaga aggCCTGG AAAAATGCTG chr3:60541542-60541622 29 1.74e-05 TCCATTGTTC AGGCCAGG TGGGACATTT chr13:92999568-92999648 44 1.74e-05 gaaacactgc aggccagg aaagagtggg chr6:14451407-14451487 53 2.43e-05 GCGGTCATGA GGGCCTGG ATTCTGCAGT chr20:61166008-61166088 53 2.43e-05 tccagagcaa gggcctgg gaacctgaat chr1:174415196-174415276 22 4.85e-05 TTTCTGCATC AGCCCAGG ATGAGGAGGA chr6:158232015-158232095 7 4.85e-05 cactcg agcccagg aattcgaggc chr1:33257684-33257764 62 5.96e-05 gggaggctgg agacctgg gcagagattt chr10:127602399-12760247 25 7.75e-05 cggcCTGTCA AGACCAGG CAGTTTACAC chr1:182415653-182415733 51 7.75e-05 TCTCTCTCCT GGCCCTGG CAGTAAGGAC chr12:54810451-54810531 43 7.75e-05 tttcacggga agaccagg ctccaagagc chr22:21167136-21167216 56 7.75e-05 ATCGAACAAT GGCCCTGG TGTTTTCTCT chr17:37057810-37057890 53 8.43e-05 ctgggagtgg ggcccagg aatcagcatg chr17:29792347-29792427 4 9.30e-05 ggt ggacctgg gaatctgcat chr4:151234685-151234765 1 1.19e-04 . AGGGcagg gacagcaaaa chr2:109220766-109220846 53 1.19e-04 ttgaaccacg agggcagg gttgactagt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:91534544-91534624 8.8e-06 4_[+2]_68 chr12:131460952-13146103 8.8e-06 72_[+2] chr1:58902870-58902950 8.8e-06 43_[+2]_29 chr7:112839423-112839503 8.8e-06 33_[+2]_39 chr3:60541542-60541622 1.7e-05 28_[+2]_44 chr13:92999568-92999648 1.7e-05 43_[+2]_29 chr6:14451407-14451487 2.4e-05 52_[+2]_20 chr20:61166008-61166088 2.4e-05 52_[+2]_20 chr1:174415196-174415276 4.8e-05 21_[+2]_51 chr6:158232015-158232095 4.8e-05 6_[+2]_66 chr1:33257684-33257764 6e-05 61_[+2]_11 chr10:127602399-12760247 7.7e-05 24_[+2]_48 chr1:182415653-182415733 7.7e-05 50_[+2]_22 chr12:54810451-54810531 7.7e-05 42_[+2]_30 chr22:21167136-21167216 7.7e-05 55_[+2]_17 chr17:37057810-37057890 8.4e-05 52_[+2]_20 chr17:29792347-29792427 9.3e-05 3_[+2]_69 chr4:151234685-151234765 0.00012 [+2]_72 chr2:109220766-109220846 0.00012 52_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGSCCWGG width=8 seqs=19 chr13:91534544-91534624 ( 5) AGGCCTGG 1 chr12:131460952-13146103 ( 73) AGGCCTGG 1 chr1:58902870-58902950 ( 44) AGGCCTGG 1 chr7:112839423-112839503 ( 34) AGGCCTGG 1 chr3:60541542-60541622 ( 29) AGGCCAGG 1 chr13:92999568-92999648 ( 44) AGGCCAGG 1 chr6:14451407-14451487 ( 53) GGGCCTGG 1 chr20:61166008-61166088 ( 53) GGGCCTGG 1 chr1:174415196-174415276 ( 22) AGCCCAGG 1 chr6:158232015-158232095 ( 7) AGCCCAGG 1 chr1:33257684-33257764 ( 62) AGACCTGG 1 chr10:127602399-12760247 ( 25) AGACCAGG 1 chr1:182415653-182415733 ( 51) GGCCCTGG 1 chr12:54810451-54810531 ( 43) AGACCAGG 1 chr22:21167136-21167216 ( 56) GGCCCTGG 1 chr17:37057810-37057890 ( 53) GGCCCAGG 1 chr17:29792347-29792427 ( 4) GGACCTGG 1 chr4:151234685-151234765 ( 1) AGGGCAGG 1 chr2:109220766-109220846 ( 53) AGGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 2.8e+003 130 -1089 53 -1089 -1089 -1089 219 -1089 -40 26 127 -1089 -1089 202 -105 -1089 -1089 218 -1089 -1089 77 -1089 -1089 90 -1089 -1089 219 -1089 -1089 -1089 219 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.8e+003 0.684211 0.000000 0.315789 0.000000 0.000000 0.000000 1.000000 0.000000 0.210526 0.263158 0.526316 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 1.000000 0.000000 0.000000 0.473684 0.000000 0.000000 0.526316 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSCCWGG MEME-2 regular expression -------------------------------------------------------------------------------- [AG]G[GCA]CC[TA]GG -------------------------------------------------------------------------------- Time 8.71 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCWGTG MEME-3 width = 8 sites = 11 llr = 112 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C a::a:::: probability G ::a::a3a matrix T :a::5:7: bits 2.2 * ** * * 2.0 * ** * * 1.8 **** * * 1.5 **** * * Relative 1.3 **** * * Entropy 1.1 **** *** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCAGTG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:170821419-170821499 43 1.13e-05 TTCTTGTATG CTGCAGTG GTGACAGGTG chr1:53209286-53209366 40 1.13e-05 gaaattgaga ctgcagtg agctatgatc chr6:14451407-14451487 64 1.13e-05 GGCCTGGATT CTGCAGTG AGGGTTTAG chr2:70232091-70232171 35 1.13e-05 catGAAGATG CTGCAGTG TCCATCGCCC chr13:92472749-92472829 1 1.13e-05 . ctgcagtg cgaagtatct chr13:91015133-91015213 60 2.28e-05 gagggtttgg ctgctgtg attggctgtg chr17:29792347-29792427 58 2.28e-05 TCTAGAATGA CTGCTGTG ACCTCTTTCC chr2:170593206-170593286 54 2.28e-05 ACACTATTTT CTGCTGTG TTTGGCGATT chr13:90583499-90583579 13 3.16e-05 ttcttgggac ctgcaggg agaaagggag chr13:81351648-81351728 67 4.05e-05 TGTATGAGAC CTGCTGGG TGAAAT chr3:46532703-46532783 40 4.05e-05 GCTGCCCCGA CTGCTGGG CAAGGAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:170821419-170821499 1.1e-05 42_[+3]_30 chr1:53209286-53209366 1.1e-05 39_[+3]_33 chr6:14451407-14451487 1.1e-05 63_[+3]_9 chr2:70232091-70232171 1.1e-05 34_[+3]_38 chr13:92472749-92472829 1.1e-05 [+3]_72 chr13:91015133-91015213 2.3e-05 59_[+3]_13 chr17:29792347-29792427 2.3e-05 57_[+3]_15 chr2:170593206-170593286 2.3e-05 53_[+3]_19 chr13:90583499-90583579 3.2e-05 12_[+3]_60 chr13:81351648-81351728 4.1e-05 66_[+3]_6 chr3:46532703-46532783 4.1e-05 39_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCWGTG width=8 seqs=11 chr2:170821419-170821499 ( 43) CTGCAGTG 1 chr1:53209286-53209366 ( 40) CTGCAGTG 1 chr6:14451407-14451487 ( 64) CTGCAGTG 1 chr2:70232091-70232171 ( 35) CTGCAGTG 1 chr13:92472749-92472829 ( 1) CTGCAGTG 1 chr13:91015133-91015213 ( 60) CTGCTGTG 1 chr17:29792347-29792427 ( 58) CTGCTGTG 1 chr2:170593206-170593286 ( 54) CTGCTGTG 1 chr13:90583499-90583579 ( 13) CTGCAGGG 1 chr13:81351648-81351728 ( 67) CTGCTGGG 1 chr3:46532703-46532783 ( 40) CTGCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 2.5e+003 -1010 218 -1010 -1010 -1010 -1010 -1010 182 -1010 -1010 219 -1010 -1010 218 -1010 -1010 97 -1010 -1010 68 -1010 -1010 219 -1010 -1010 -1010 32 136 -1010 -1010 219 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.000000 0.000000 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGTG MEME-3 regular expression -------------------------------------------------------------------------------- CTGC[AT]G[TG]G -------------------------------------------------------------------------------- Time 12.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGGGRG MEME-4 width = 8 sites = 9 llr = 92 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::4: pos.-specific C 1::::::: probability G :::aaa6a matrix T 9aa::::: bits 2.2 *** * 2.0 *** * 1.8 ***** * 1.5 ***** * Relative 1.3 ****** * Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:126216845-126216925 50 1.14e-05 TAACTCTAGT TTTGGGGG GTTCGGCTTA chr11:125760973-12576105 73 1.14e-05 CAAAGTTGCA TTTGGGGG chr7:148398952-148399032 60 1.14e-05 ATAAAATGTC TTTGGGGG ACTGTCAGCT chr21:36278546-36278626 11 1.14e-05 TTTTGACAGG TTTGGGGG TTTAAGAAAC chr22:21191384-21191464 48 2.59e-05 atcccagcac tttgggag gcctaggcac chr22:21459318-21459398 5 2.59e-05 gcac tttgggag gatgaggcat chr6:148545278-148545358 44 2.59e-05 attccaatgc tttgggag gctgaggcgg chr13:91288709-91288789 67 2.59e-05 attccaacat tttgggag gcggaa chr5:149177913-149177993 69 3.48e-05 TATGGCAAAT CTTGGGGG TAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:126216845-126216925 1.1e-05 49_[+4]_23 chr11:125760973-12576105 1.1e-05 72_[+4] chr7:148398952-148399032 1.1e-05 59_[+4]_13 chr21:36278546-36278626 1.1e-05 10_[+4]_62 chr22:21191384-21191464 2.6e-05 47_[+4]_25 chr22:21459318-21459398 2.6e-05 4_[+4]_68 chr6:148545278-148545358 2.6e-05 43_[+4]_29 chr13:91288709-91288789 2.6e-05 66_[+4]_6 chr5:149177913-149177993 3.5e-05 68_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGGGRG width=8 seqs=9 chr5:126216845-126216925 ( 50) TTTGGGGG 1 chr11:125760973-12576105 ( 73) TTTGGGGG 1 chr7:148398952-148399032 ( 60) TTTGGGGG 1 chr21:36278546-36278626 ( 11) TTTGGGGG 1 chr22:21191384-21191464 ( 48) TTTGGGAG 1 chr22:21459318-21459398 ( 5) TTTGGGAG 1 chr6:148545278-148545358 ( 44) TTTGGGAG 1 chr13:91288709-91288789 ( 67) TTTGGGAG 1 chr5:149177913-149177993 ( 69) CTTGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 1.4e+004 -982 -99 -982 165 -982 -982 -982 182 -982 -982 -982 182 -982 -982 219 -982 -982 -982 219 -982 -982 -982 219 -982 68 -982 134 -982 -982 -982 219 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.4e+004 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.444444 0.000000 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGGRG MEME-4 regular expression -------------------------------------------------------------------------------- TTTGGG[GA]G -------------------------------------------------------------------------------- Time 16.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGSAAAT MEME-5 width = 8 sites = 9 llr = 92 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::aaa: pos.-specific C a::4:::: probability G ::a6:::: matrix T :::::::a bits 2.2 * * 2.0 * * 1.8 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGAAAT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:20929297-20929377 23 1.78e-05 TGACCTCCTC CAGGAAAT CTTCCTCAGT chr1:53209286-53209366 27 1.78e-05 cgcttgattc caggaaat tgagactgca chr2:183879682-183879762 28 1.78e-05 GACATAACTT CAGGAAAT TTGAAGAGTA chr18:9473431-9473511 34 1.78e-05 TTAAACAGTA CAGGAAAT TTGTGGTTCA chr13:93036444-93036524 19 1.78e-05 CCAAGTCTCA CAGGAAAT GGGGCAGCTA chr7:133232040-133232120 48 3.58e-05 tctgagcctt cagcaaat tgtcatcttt chr2:70232091-70232171 1 3.58e-05 . cagcaaat agctgttaaa chr11:32488058-32488138 38 3.58e-05 GTCTCCAAGC CAGCAAAT ACACAAAGAT chr2:98264071-98264151 59 3.58e-05 AGTACCcacc cagcaaat atttattgtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:20929297-20929377 1.8e-05 22_[+5]_50 chr1:53209286-53209366 1.8e-05 26_[+5]_46 chr2:183879682-183879762 1.8e-05 27_[+5]_45 chr18:9473431-9473511 1.8e-05 33_[+5]_39 chr13:93036444-93036524 1.8e-05 18_[+5]_54 chr7:133232040-133232120 3.6e-05 47_[+5]_25 chr2:70232091-70232171 3.6e-05 [+5]_72 chr11:32488058-32488138 3.6e-05 37_[+5]_35 chr2:98264071-98264151 3.6e-05 58_[+5]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSAAAT width=8 seqs=9 chr16:20929297-20929377 ( 23) CAGGAAAT 1 chr1:53209286-53209366 ( 27) CAGGAAAT 1 chr2:183879682-183879762 ( 28) CAGGAAAT 1 chr18:9473431-9473511 ( 34) CAGGAAAT 1 chr13:93036444-93036524 ( 19) CAGGAAAT 1 chr7:133232040-133232120 ( 48) CAGCAAAT 1 chr2:70232091-70232171 ( 1) CAGCAAAT 1 chr11:32488058-32488138 ( 38) CAGCAAAT 1 chr2:98264071-98264151 ( 59) CAGCAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 1.1e+004 -982 218 -982 -982 185 -982 -982 -982 -982 -982 219 -982 -982 101 134 -982 185 -982 -982 -982 185 -982 -982 -982 185 -982 -982 -982 -982 -982 -982 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.555556 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAAAT MEME-5 regular expression -------------------------------------------------------------------------------- CAG[GC]AAAT -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:7515215-7515295 8.10e-01 80 chr22:22883054-22883134 4.00e-01 80 chr22:21438944-21439024 2.37e-01 80 chr7:106620048-106620128 4.39e-01 80 chr4:190895866-190895946 3.70e-01 80 chr13:93957551-93957631 2.85e-02 80 chr22:20864772-20864852 1.73e-01 80 chr1:43595159-43595239 1.01e-01 33_[+3(9.86e-05)]_39 chr7:105190767-105190847 4.45e-01 80 chr4:6677202-6677282 1.67e-01 80 chr13:90583499-90583579 5.12e-03 12_[+3(3.16e-05)]_60 chr13:81178062-81178142 3.24e-01 80 chr2:172917247-172917327 2.16e-02 49_[+1(4.64e-05)]_23 chr22:21167136-21167216 9.29e-02 55_[+2(7.75e-05)]_17 chr20:26210945-26211025 9.71e-01 80 chr13:91844062-91844142 5.08e-01 80 chr6:26339840-26339920 6.38e-01 80 chr10:127613996-12761407 4.05e-02 80 chr20:29611089-29611169 4.94e-01 80 chr22:23172572-23172652 6.78e-01 80 chr13:93908229-93908309 1.76e-02 80 chr13:93932262-93932342 3.19e-02 80 chr22:21951758-21951838 3.47e-02 80 chr1:173273613-173273693 4.72e-01 80 chr21:31241306-31241386 4.24e-03 16_[+1(8.80e-06)]_56 chr2:169925992-169926072 4.86e-01 80 chr5:34526057-34526137 3.42e-02 80 chr6:157713888-157713968 9.99e-01 80 chr22:17155045-17155125 6.61e-01 80 chr9:125896704-125896784 4.33e-01 80 chr6:158232015-158232095 4.27e-03 6_[+2(4.85e-05)]_66 chr7:145765074-145765154 7.82e-01 80 chr3:46532703-46532783 1.83e-02 39_[+3(4.05e-05)]_33 chr13:91392500-91392580 7.99e-02 35_[+5(8.14e-05)]_37 chr1:246308348-246308428 2.52e-02 10_[+1(2.63e-05)]_62 chr11:68277899-68277979 4.93e-01 80 chr22:19825165-19825245 3.57e-01 80 chr1:41353544-41353624 3.44e-01 80 chr13:93854541-93854621 3.82e-01 80 chr1:198157640-198157720 5.00e-01 80 chr13:90976508-90976588 9.26e-01 80 chr6:2962668-2962748 1.49e-01 80 chr6:20217008-20217088 3.85e-01 80 chr7:158640230-158640310 6.59e-01 80 chr13:91807799-91807879 5.02e-02 80 chr22:22205875-22205955 2.50e-02 26_[+1(8.80e-06)]_46 chr13:91288709-91288789 2.29e-02 66_[+4(2.59e-05)]_6 chr6:88443728-88443808 2.28e-01 80 chr10:127597875-12759795 4.88e-03 6_[+1(4.64e-05)]_66 chr7:135927874-135927954 5.02e-01 80 chr10:52387552-52387632 5.47e-01 80 chr1:51697072-51697152 1.87e-01 80 chr16:69629262-69629342 2.52e-01 80 chr6:15314784-15314864 1.70e-01 80 chr15:40181042-40181122 1.30e-02 80 chr22:22912369-22912449 2.75e-01 80 chr2:172041940-172042020 7.72e-01 80 chr7:133043071-133043151 4.00e-01 80 chr16:84780176-84780256 6.95e-02 80 chr1:213300672-213300752 9.93e-01 80 chr2:98264071-98264151 7.91e-03 58_[+5(3.58e-05)]_14 chr21:15731320-15731400 8.76e-01 80 chr1:201546242-201546322 6.50e-02 80 chr12:54810451-54810531 2.06e-01 42_[+2(7.75e-05)]_30 chr7:110041359-110041439 7.36e-02 80 chr22:19233049-19233129 9.79e-01 80 chr21:36981973-36982053 1.89e-03 8_[+1(4.64e-05)]_64 chr22:22833936-22834016 6.77e-01 80 chr10:127614959-12761503 8.51e-01 80 chr21:35450420-35450500 6.87e-01 80 chr13:93036444-93036524 3.60e-02 18_[+5(1.78e-05)]_54 chr10:70165495-70165575 3.39e-01 80 chr13:91570416-91570496 4.38e-01 80 chr21:36278546-36278626 1.26e-02 10_[+4(1.14e-05)]_62 chr22:22178020-22178100 7.96e-01 80 chr13:92996694-92996774 4.43e-01 80 chr3:139064185-139064265 3.74e-01 80 chr3:138372914-138372994 9.84e-01 80 chr2:152147224-152147304 1.50e-04 46_[+4(7.23e-05)]_26 chr1:145102726-145102806 3.00e-02 80 chr7:120825722-120825802 2.42e-01 80 chr1:182415653-182415733 6.75e-02 50_[+2(7.75e-05)]_22 chr15:68143149-68143229 4.27e-01 80 chr7:105433008-105433088 3.29e-01 80 chr11:32488058-32488138 6.25e-02 37_[+5(3.58e-05)]_35 chr7:102741625-102741705 2.30e-01 80 chr13:93056589-93056669 5.83e-01 80 chr13:92472749-92472829 3.50e-02 [+3(1.13e-05)]_72 chr1:174415196-174415276 1.27e-02 21_[+2(4.85e-05)]_51 chr1:166406403-166406483 8.64e-04 60_[+1(8.80e-06)]_12 chr2:172014681-172014761 2.61e-01 80 chr6:7413420-7413500 4.22e-01 80 chr5:94887342-94887422 9.93e-01 80 chr20:30649582-30649662 3.57e-01 80 chr2:70232091-70232171 3.65e-04 [+5(3.58e-05)]_26_[+3(1.13e-05)]_38 chr18:9473431-9473511 3.03e-02 33_[+5(1.78e-05)]_39 chr7:112839423-112839503 5.17e-03 33_[+2(8.76e-06)]_39 chr6:15891100-15891180 6.44e-01 80 chr17:45249333-45249413 2.09e-01 80 chr9:127622845-127622925 3.72e-03 80 chr6:37784741-37784821 1.98e-01 80 chr1:143534934-143535014 2.03e-01 80 chr6:154519411-154519491 1.54e-01 80 chr13:93183821-93183901 2.78e-01 80 chr1:119610684-119610764 2.66e-01 80 chr22:22497924-22498004 5.87e-01 80 chr1:12512967-12513047 2.76e-01 80 chr13:91367545-91367625 5.06e-01 80 chr1:169804028-169804108 1.09e-01 80 chr5:89822539-89822619 2.60e-02 80 chr2:26497008-26497088 5.66e-02 59_[+1(4.64e-05)]_13 chr2:55546022-55546102 2.25e-02 80 chr6:36998829-36998909 6.89e-01 80 chr2:183879682-183879762 3.19e-02 27_[+5(1.78e-05)]_45 chr22:23388669-23388749 9.57e-01 80 chr9:99615947-99616027 2.02e-02 80 chr7:133633196-133633276 5.15e-01 80 chr13:91128842-91128922 6.85e-02 80 chr1:111499449-111499529 1.71e-01 80 chr19:52042910-52042990 9.54e-02 80 chr21:39457569-39457649 8.95e-01 80 chr5:112092693-112092773 3.90e-01 80 chr7:64692080-64692160 2.33e-01 19_[+3(9.86e-05)]_53 chr7:92362115-92362195 9.77e-01 80 chr4:190491462-190491542 1.79e-01 80 chr5:130782858-130782938 5.25e-01 80 chr21:16113741-16113821 3.95e-01 80 chr1:45362697-45362777 5.48e-03 34_[+1(2.63e-05)]_38 chr6:14510533-14510613 5.56e-01 80 chr22:22857721-22857801 2.95e-02 13_[+1(2.63e-05)]_59 chr21:11174132-11174212 8.45e-01 80 chr4:40198488-40198568 5.94e-01 80 chr7:132763676-132763756 9.79e-01 80 chr2:170593206-170593286 1.11e-02 53_[+3(2.28e-05)]_19 chr6:148545278-148545358 1.25e-02 43_[+4(2.59e-05)]_29 chr7:148398952-148399032 2.29e-02 59_[+4(1.14e-05)]_13 chr1:86149994-86150074 9.68e-01 80 chr13:91460473-91460553 1.25e-01 80 chr13:91857803-91857883 6.28e-01 80 chr13:81257695-81257775 2.49e-01 80 chr18:9509001-9509081 2.17e-01 80 chr2:69585008-69585088 4.78e-02 31_[+5(8.14e-05)]_41 chr7:133232040-133232120 4.99e-02 47_[+5(3.58e-05)]_25 chr6:13353088-13353168 2.74e-01 80 chr22:23060377-23060457 1.82e-01 80 chr7:105995361-105995441 5.20e-01 80 chr10:17553393-17553473 5.16e-01 80 chr13:81351648-81351728 1.98e-02 66_[+3(4.05e-05)]_6 chr15:20566535-20566615 3.76e-01 80 chr10:81235790-81235870 4.35e-01 80 chr13:92999568-92999648 8.08e-04 43_[+2(1.74e-05)]_29 chr10:74006031-74006111 2.87e-01 80 chr6:17964398-17964478 6.31e-01 80 chr21:30679511-30679591 9.99e-01 80 chr9:115264961-115265041 3.63e-01 80 chr7:105227064-105227144 5.96e-02 80 chr18:34390214-34390294 3.55e-01 80 chr7:77115215-77115295 1.84e-01 80 chr1:8674793-8674873 3.46e-01 80 chr13:92245445-92245525 5.96e-01 80 chr7:105400760-105400840 1.73e-01 80 chr3:60541542-60541622 1.97e-03 28_[+2(1.74e-05)]_44 chr2:62245781-62245861 4.26e-01 80 chr2:169774181-169774261 2.41e-01 80 chr11:118255336-11825541 6.75e-01 80 chr5:149177913-149177993 1.07e-01 68_[+4(3.48e-05)]_4 chr7:86547697-86547777 7.44e-01 80 chr6:7769544-7769624 1.19e-02 80 chr13:91759990-91760070 9.22e-01 80 chr1:184003140-184003220 1.63e-02 10_[+1(6.89e-05)]_62 chr17:37057810-37057890 5.85e-03 52_[+2(8.43e-05)]_20 chr22:21459318-21459398 2.79e-04 4_[+4(2.59e-05)]_68 chr22:22824020-22824100 3.34e-01 80 chr13:91190378-91190458 1.18e-01 80 chr7:129304942-129305022 1.48e-01 80 chr1:58902870-58902950 2.63e-04 35_[+4(4.61e-05)]_[+2(8.76e-06)]_29 chr22:22140997-22141077 4.96e-02 80 chr10:127575784-12757586 5.11e-03 80 chr2:231576980-231577060 1.48e-01 80 chr21:31151324-31151404 2.81e-01 80 chr13:92270943-92271023 1.67e-02 80 chr22:21174973-21175053 8.53e-01 80 chr17:29792347-29792427 1.02e-03 3_[+2(9.30e-05)]_46_[+3(2.28e-05)]_\ 15 chr21:38250332-38250412 1.34e-02 72_[+1(2.63e-05)] chr15:23072796-23072876 2.16e-02 80 chr10:127602399-12760247 7.15e-02 24_[+2(7.75e-05)]_48 chr22:17298314-17298394 6.89e-01 80 chr5:27043039-27043119 8.21e-02 80 chr13:90468205-90468285 8.27e-01 80 chr8:59564315-59564395 6.92e-01 80 chr6:111198349-111198429 9.29e-01 80 chr12:131460952-13146103 3.33e-04 [+2(7.75e-05)]_64_[+2(8.76e-06)] chr1:112153129-112153209 1.00e+00 80 chr10:77469197-77469277 2.33e-01 80 chr7:106513125-106513205 9.28e-01 80 chr5:53291541-53291621 5.86e-03 80 chr22:23121133-23121213 1.97e-01 80 chr11:125760973-12576105 7.88e-03 72_[+4(1.14e-05)] chr20:61166008-61166088 4.10e-03 52_[+2(2.43e-05)]_20 chr4:127720762-127720842 2.30e-01 80 chr1:39907134-39907214 8.65e-01 80 chr13:108641522-10864160 4.26e-01 80 chr1:228453530-228453610 3.99e-02 80 chr7:115886457-115886537 9.94e-01 80 chr10:47062789-47062869 1.50e-02 80 chr7:106302980-106303060 8.22e-01 80 chr6:20638323-20638403 3.61e-01 80 chr1:16887197-16887277 1.74e-01 80 chr16:79858290-79858370 5.19e-02 80 chr1:180831420-180831500 9.59e-01 80 chr1:162438003-162438083 9.91e-01 80 chr12:93637038-93637118 6.40e-01 80 chr18:23112791-23112871 4.61e-01 80 chr13:93165243-93165323 6.27e-02 80 chr1:33257684-33257764 3.39e-05 53_[+1(4.64e-05)]_[+2(5.96e-05)]_11 chr7:112490417-112490497 8.07e-02 80 chr13:92066839-92066919 4.05e-01 80 chr5:126216845-126216925 3.61e-02 49_[+4(1.14e-05)]_23 chr13:91534544-91534624 1.24e-03 4_[+2(8.76e-06)]_68 chr9:114190368-114190448 5.52e-01 80 chr1:10369875-10369955 6.77e-01 80 chr2:150257834-150257914 5.03e-02 80 chr6:37271573-37271653 2.52e-01 80 chr13:91646137-91646217 5.73e-02 80 chr2:178580644-178580724 7.91e-02 80 chr13:91015133-91015213 2.04e-02 59_[+3(2.28e-05)]_13 chr17:40612911-40612991 2.45e-02 80 chr2:109220766-109220846 8.00e-02 80 chr6:14451407-14451487 7.76e-05 52_[+2(2.43e-05)]_3_[+3(1.13e-05)]_\ 9 chr7:95201126-95201206 3.06e-01 80 chr7:108458501-108458581 5.83e-01 80 chr22:21191384-21191464 7.00e-04 47_[+4(2.59e-05)]_25 chr7:105816186-105816266 9.96e-01 80 chr13:90491104-90491184 1.02e-01 80 chr5:39358529-39358609 7.22e-02 80 chr20:37380374-37380454 1.48e-02 80 chr7:120623125-120623205 4.35e-01 80 chr1:53209286-53209366 2.18e-06 26_[+5(1.78e-05)]_5_[+3(1.13e-05)]_\ 24_[+1(8.80e-06)]_1 chr16:20929297-20929377 1.49e-02 22_[+5(1.78e-05)]_50 chr2:170821419-170821499 6.69e-03 42_[+3(1.13e-05)]_30 chr21:11039161-11039241 7.70e-02 80 chr4:151234685-151234765 2.92e-02 80 chr7:111132428-111132508 6.88e-01 80 chr1:182178218-182178298 9.34e-02 80 chr7:139703774-139703854 3.44e-01 80 chr1:145074908-145074988 4.23e-01 80 chr10:76187698-76187778 7.52e-02 80 chr13:92099999-92100079 4.61e-01 80 chr22:23175449-23175529 2.97e-01 80 chr22:22154029-22154109 6.31e-03 53_[+1(2.63e-05)]_19 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************