******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/BRD9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:37627093-37627173 1.0000 80 chr19:2281113-2281193 1.0000 80 chr7:130596008-130596088 1.0000 80 chr1:24451638-24451718 1.0000 80 chr15:67191169-67191249 1.0000 80 chr2:240652248-240652328 1.0000 80 chr21:39189658-39189738 1.0000 80 chr8:143079555-143079635 1.0000 80 chr6:35467245-35467325 1.0000 80 chr6:35467444-35467524 1.0000 80 chr16:85239019-85239099 1.0000 80 chr1:205418674-205418754 1.0000 80 chr17:78494802-78494882 1.0000 80 chr5:171845207-171845287 1.0000 80 chr20:31901942-31902022 1.0000 80 chr10:81176380-81176460 1.0000 80 chr22:28065167-28065247 1.0000 80 chrX:12789674-12789754 1.0000 80 chr11:44623733-44623813 1.0000 80 chr10:72666312-72666392 1.0000 80 chr19:4060457-4060537 1.0000 80 chr1:33355605-33355685 1.0000 80 chr12:117052162-11705224 1.0000 80 chr19:3236458-3236538 1.0000 80 chr10:119171727-11917180 1.0000 80 chr11:72950843-72950923 1.0000 80 chr15:41324104-41324184 1.0000 80 chr17:46565951-46566031 1.0000 80 chr20:35964516-35964596 1.0000 80 chr7:44690039-44690119 1.0000 80 chr16:1241148-1241228 1.0000 80 chr20:47295709-47295789 1.0000 80 chr9:132366848-132366928 1.0000 80 chr3:197161000-197161080 1.0000 80 chr12:57589860-57589940 1.0000 80 chr6:36089691-36089771 1.0000 80 chr16:27647902-27647982 1.0000 80 chr19:6825533-6825613 1.0000 80 chr16:88532856-88532936 1.0000 80 chr15:67078709-67078789 1.0000 80 chr9:130303559-130303639 1.0000 80 chr3:4458251-4458331 1.0000 80 chr20:30945187-30945267 1.0000 80 chr3:193569346-193569426 1.0000 80 chr9:140795072-140795152 1.0000 80 chr6:34537259-34537339 1.0000 80 chr19:2281718-2281798 1.0000 80 chr10:72293126-72293206 1.0000 80 chr11:45828049-45828129 1.0000 80 chr19:832182-832262 1.0000 80 chr4:24994749-24994829 1.0000 80 chr1:243420062-243420142 1.0000 80 chr17:44061855-44061935 1.0000 80 chr12:122884288-12288436 1.0000 80 chr19:4161532-4161612 1.0000 80 chr15:70492500-70492580 1.0000 80 chr3:13290293-13290373 1.0000 80 chr17:21198182-21198262 1.0000 80 chr12:114135085-11413516 1.0000 80 chr1:25413307-25413387 1.0000 80 chr2:95660828-95660908 1.0000 80 chr6:135466370-135466450 1.0000 80 chr7:1627513-1627593 1.0000 80 chr22:35779448-35779528 1.0000 80 chr1:28575177-28575257 1.0000 80 chr2:127412906-127412986 1.0000 80 chr20:49822928-49823008 1.0000 80 chr17:71221040-71221120 1.0000 80 chr9:116412296-116412376 1.0000 80 chr15:51169204-51169284 1.0000 80 chr12:125039148-12503922 1.0000 80 chr7:42985807-42985887 1.0000 80 chr9:135864150-135864230 1.0000 80 chr15:69744522-69744602 1.0000 80 chr16:27648108-27648188 1.0000 80 chr18:9684169-9684249 1.0000 80 chr15:66937429-66937509 1.0000 80 chr3:5029259-5029339 1.0000 80 chr1:15323429-15323509 1.0000 80 chr17:27539361-27539441 1.0000 80 chr19:19173839-19173919 1.0000 80 chr17:18917491-18917571 1.0000 80 chr8:915501-915581 1.0000 80 chr6:161664508-161664588 1.0000 80 chr3:156848492-156848572 1.0000 80 chr12:34174948-34175028 1.0000 80 chr12:108565991-10856607 1.0000 80 chr12:108999462-10899954 1.0000 80 chr3:128586468-128586548 1.0000 80 chr8:103540894-103540974 1.0000 80 chr10:80883991-80884071 1.0000 80 chr9:129467860-129467940 1.0000 80 chr20:43540101-43540181 1.0000 80 chr19:50872117-50872197 1.0000 80 chr16:11237677-11237757 1.0000 80 chr12:51159240-51159320 1.0000 80 chr3:49466878-49466958 1.0000 80 chr6:138258034-138258114 1.0000 80 chr16:87892181-87892261 1.0000 80 chr6:138258243-138258323 1.0000 80 chr1:161457015-161457095 1.0000 80 chr8:145030757-145030837 1.0000 80 chr16:88478768-88478848 1.0000 80 chr12:125230899-12523097 1.0000 80 chr10:17472789-17472869 1.0000 80 chr9:123838010-123838090 1.0000 80 chr12:108999996-10900007 1.0000 80 chr1:16874154-16874234 1.0000 80 chr9:100686015-100686095 1.0000 80 chr5:150603143-150603223 1.0000 80 chr5:89825856-89825936 1.0000 80 chr6:10404244-10404324 1.0000 80 chr1:2258724-2258804 1.0000 80 chr5:172198974-172199054 1.0000 80 chr17:74016071-74016151 1.0000 80 chr17:75424113-75424193 1.0000 80 chr3:45097178-45097258 1.0000 80 chr9:100566351-100566431 1.0000 80 chr1:17452539-17452619 1.0000 80 chr9:127251057-127251137 1.0000 80 chr20:55993065-55993145 1.0000 80 chr3:138634793-138634873 1.0000 80 chr7:157318303-157318383 1.0000 80 chr20:35964720-35964800 1.0000 80 chr8:22043896-22043976 1.0000 80 chr19:50860545-50860625 1.0000 80 chr6:109704528-109704608 1.0000 80 chr20:36788936-36789016 1.0000 80 chr1:206646340-206646420 1.0000 80 chr1:16339956-16340036 1.0000 80 chr2:85839525-85839605 1.0000 80 chr20:36267128-36267208 1.0000 80 chr19:11266879-11266959 1.0000 80 chr1:29187138-29187218 1.0000 80 chr8:42270121-42270201 1.0000 80 chr17:45726494-45726574 1.0000 80 chr6:31797808-31797888 1.0000 80 chr11:107727833-10772791 1.0000 80 chr9:117247533-117247613 1.0000 80 chr5:68338891-68338971 1.0000 80 chr1:31197540-31197620 1.0000 80 chr2:146510122-146510202 1.0000 80 chr13:50656735-50656815 1.0000 80 chr6:135466573-135466653 1.0000 80 chr6:28984916-28984996 1.0000 80 chr17:40229341-40229421 1.0000 80 chr14:75762835-75762915 1.0000 80 chr17:74270835-74270915 1.0000 80 chr5:134241406-134241486 1.0000 80 chr20:52532388-52532468 1.0000 80 chr4:87932984-87933064 1.0000 80 chr6:35459031-35459111 1.0000 80 chr10:74088133-74088213 1.0000 80 chr11:118661214-11866129 1.0000 80 chr3:43731960-43732040 1.0000 80 chr12:116996570-11699665 1.0000 80 chr17:79652271-79652351 1.0000 80 chr11:75270059-75270139 1.0000 80 chr8:91013249-91013329 1.0000 80 chr7:129650765-129650845 1.0000 80 chr1:21503229-21503309 1.0000 80 chr6:44042332-44042412 1.0000 80 chr9:100686225-100686305 1.0000 80 chr11:57503338-57503418 1.0000 80 chr15:79152923-79153003 1.0000 80 chr1:203594954-203595034 1.0000 80 chr9:124067593-124067673 1.0000 80 chr5:156962189-156962269 1.0000 80 chr1:241694842-241694922 1.0000 80 chr12:116996365-11699644 1.0000 80 chr5:180634991-180635071 1.0000 80 chr4:38903999-38904079 1.0000 80 chr11:72951053-72951133 1.0000 80 chr22:42840447-42840527 1.0000 80 chr2:158114064-158114144 1.0000 80 chr1:161536192-161536272 1.0000 80 chr17:8022469-8022549 1.0000 80 chr16:88847668-88847748 1.0000 80 chr20:46236079-46236159 1.0000 80 chr19:49056995-49057075 1.0000 80 chr1:148000791-148000871 1.0000 80 chr1:31376680-31376760 1.0000 80 chr10:73119601-73119681 1.0000 80 chr6:31461752-31461832 1.0000 80 chr3:5468227-5468307 1.0000 80 chr1:113615505-113615585 1.0000 80 chr17:37310743-37310823 1.0000 80 chr19:47839482-47839562 1.0000 80 chr6:27863332-27863412 1.0000 80 chr16:85626393-85626473 1.0000 80 chr7:145716635-145716715 1.0000 80 chr20:36789138-36789218 1.0000 80 chr1:149680185-149680265 1.0000 80 chr12:111837354-11183743 1.0000 80 chr6:139696801-139696881 1.0000 80 chr1:149294643-149294723 1.0000 80 chr8:71060403-71060483 1.0000 80 chr8:71060602-71060682 1.0000 80 chr3:45103394-45103474 1.0000 80 chr7:110969840-110969920 1.0000 80 chr19:49061442-49061522 1.0000 80 chr1:184942790-184942870 1.0000 80 chr3:4392689-4392769 1.0000 80 chr16:19130519-19130599 1.0000 80 chr4:15651666-15651746 1.0000 80 chr10:97884463-97884543 1.0000 80 chr19:14205733-14205813 1.0000 80 chr10:32236606-32236686 1.0000 80 chr19:47033145-47033225 1.0000 80 chr6:138132709-138132789 1.0000 80 chr6:37178288-37178368 1.0000 80 chr1:113683407-113683487 1.0000 80 chr3:45103595-45103675 1.0000 80 chr12:122125336-12212541 1.0000 80 chr6:30845567-30845647 1.0000 80 chr15:45493374-45493454 1.0000 80 chr4:77904015-77904095 1.0000 80 chr12:113546562-11354664 1.0000 80 chr6:28918800-28918880 1.0000 80 chr16:87905289-87905369 1.0000 80 chr1:12659853-12659933 1.0000 80 chr6:27559592-27559672 1.0000 80 chr22:36635408-36635488 1.0000 80 chr1:204475642-204475722 1.0000 80 chr6:37175853-37175933 1.0000 80 chr6:27515524-27515604 1.0000 80 chr19:41403326-41403406 1.0000 80 chr7:111126720-111126800 1.0000 80 chr18:3447811-3447891 1.0000 80 chr6:28323985-28324065 1.0000 80 chr17:49027822-49027902 1.0000 80 chr17:80231416-80231496 1.0000 80 chr12:125406294-12540637 1.0000 80 chr4:99916262-99916342 1.0000 80 chr20:35463539-35463619 1.0000 80 chr17:78120850-78120930 1.0000 80 chr5:150603346-150603426 1.0000 80 chr6:26521501-26521581 1.0000 80 chr2:178029535-178029615 1.0000 80 chr1:161500093-161500173 1.0000 80 chr6:30684786-30684866 1.0000 80 chr19:4639084-4639164 1.0000 80 chr1:167835235-167835315 1.0000 80 chr1:156675855-156675935 1.0000 80 chr8:67025596-67025676 1.0000 80 chr20:49023428-49023508 1.0000 80 chr9:130624462-130624542 1.0000 80 chr2:26074813-26074893 1.0000 80 chr1:182270978-182271058 1.0000 80 chr5:180634790-180634870 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_BRD9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/BRD9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.245 C 0.253 G 0.252 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.246 C 0.253 G 0.252 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGAGAGG MEME-1 width = 8 sites = 36 llr = 344 E-value = 4.4e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a:a:a11 pos.-specific C 9::::::: probability G ::a:a:89 matrix T ::::::1: bits 2.0 * *** 1.8 ***** 1.6 ***** 1.4 ****** * Relative 1.2 ****** * Entropy 1.0 ******** (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156675855-156675935 3 1.52e-05 CT CAGAGAGG GGCTTGGGAG chr1:167835235-167835315 15 1.52e-05 tctctcacca cagagagg aaacttagga chr19:47033145-47033225 46 1.52e-05 aagtgaggct cagagagg tcatttaact chr10:73119601-73119681 47 1.52e-05 acctgggacc cagagagg ttgagtggct chr4:38903999-38904079 46 1.52e-05 cgcagagact cagagagg ttaagcagct chr12:116996365-11699644 40 1.52e-05 aactgaggct cagagagg ttcagtgtca chr1:29187138-29187218 45 1.52e-05 gaaacagaat cagagagg tcaggtggtt chr20:36788936-36789016 8 1.52e-05 agaggct cagagagg ttaagtaatt chr17:75424113-75424193 68 1.52e-05 ccgggaggca cagagagg ctgag chr6:10404244-10404324 59 1.52e-05 AGACCCTACT CAGAGAGG TAAGGCAAAG chr16:87892181-87892261 2 1.52e-05 t cagagagg ttgtcccact chr3:128586468-128586548 16 1.52e-05 AGCAGCTgca cagagagg ttaagtcact chr17:18917491-18917571 60 1.52e-05 AACTCATCCC CAGAGAGG GGAGGCGACC chr12:125039148-12503922 17 1.52e-05 GGCTGTGACA CAGAGAGG GCAGCGAGAG chr3:13290293-13290373 33 1.52e-05 cagagctgca cagagagg ctaagtcacc chr1:243420062-243420142 10 1.52e-05 agcgaagct cagagagg ttgaattaca chr19:832182-832262 32 1.52e-05 ggcccaggtt cagagagg ttgggtggct chr6:34537259-34537339 55 1.52e-05 ctttgaggca cagagagg ttaaggaggt chr19:4060457-4060537 26 1.52e-05 CTGAgaggct cagagagg tgaggcggcc chr16:85239019-85239099 53 1.52e-05 aagtgaagtg cagagagg ttagaccact chr11:107727833-10772791 54 3.00e-05 gactggagca cagagaag ttaagtgact chr8:145030757-145030837 40 3.00e-05 CACAGCTGTT CAGAGAAG GAACACACAG chr7:42985807-42985887 17 3.00e-05 TGCAGTGTTT CAGAGAAG TAAAGAACCA chr12:114135085-11413516 38 3.00e-05 agctagtgaa cagagaag gctgtattag chr11:72950843-72950923 43 3.00e-05 ATCAAGTGAC CAGAGAAG TGAAGTGACC chr5:150603346-150603426 45 4.48e-05 CCGGGCCGAC CAGAGAGA GCCCGGGGCG chr20:36789138-36789218 49 4.48e-05 TTTCAGGCAG CAGAGAGA TTAGAAAGTT chr10:72666312-72666392 61 4.48e-05 CTGAGATGGC CAGAGAGA ATGTCCAGAA chr22:37627093-37627173 12 4.48e-05 gaaacacagg cagagaga ggctacgtga chr20:35463539-35463619 15 5.99e-05 gaaacaagct cagagatg tgaaggaact chr17:44061855-44061935 15 5.99e-05 ACGCCTAACA CAGAGATG TGCAGGGCAC chr16:19130519-19130599 62 7.47e-05 AAAGTGAAGC AAGAGAGG GAAGGGGAAA chr2:146510122-146510202 30 7.47e-05 AAAGAACTGA AAGAGAGG GAGGAATTGC chr13:50656735-50656815 6 8.99e-05 aggct cagagacg ttaagtaatt chr17:40229341-40229421 67 1.20e-04 cccggcttta gagagagg gacatt chr1:24451638-24451718 66 1.20e-04 tcaaacacat cacagagg ggtaggg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156675855-156675935 1.5e-05 2_[+1]_70 chr1:167835235-167835315 1.5e-05 14_[+1]_58 chr19:47033145-47033225 1.5e-05 45_[+1]_27 chr10:73119601-73119681 1.5e-05 46_[+1]_26 chr4:38903999-38904079 1.5e-05 45_[+1]_27 chr12:116996365-11699644 1.5e-05 39_[+1]_33 chr1:29187138-29187218 1.5e-05 44_[+1]_28 chr20:36788936-36789016 1.5e-05 7_[+1]_65 chr17:75424113-75424193 1.5e-05 67_[+1]_5 chr6:10404244-10404324 1.5e-05 58_[+1]_14 chr16:87892181-87892261 1.5e-05 1_[+1]_71 chr3:128586468-128586548 1.5e-05 15_[+1]_57 chr17:18917491-18917571 1.5e-05 59_[+1]_13 chr12:125039148-12503922 1.5e-05 16_[+1]_56 chr3:13290293-13290373 1.5e-05 32_[+1]_40 chr1:243420062-243420142 1.5e-05 9_[+1]_63 chr19:832182-832262 1.5e-05 31_[+1]_41 chr6:34537259-34537339 1.5e-05 54_[+1]_18 chr19:4060457-4060537 1.5e-05 25_[+1]_47 chr16:85239019-85239099 1.5e-05 52_[+1]_20 chr11:107727833-10772791 3e-05 53_[+1]_19 chr8:145030757-145030837 3e-05 39_[+1]_33 chr7:42985807-42985887 3e-05 16_[+1]_56 chr12:114135085-11413516 3e-05 37_[+1]_35 chr11:72950843-72950923 3e-05 42_[+1]_30 chr5:150603346-150603426 4.5e-05 44_[+1]_28 chr20:36789138-36789218 4.5e-05 48_[+1]_24 chr10:72666312-72666392 4.5e-05 60_[+1]_12 chr22:37627093-37627173 4.5e-05 11_[+1]_61 chr20:35463539-35463619 6e-05 14_[+1]_58 chr17:44061855-44061935 6e-05 14_[+1]_58 chr16:19130519-19130599 7.5e-05 61_[+1]_11 chr2:146510122-146510202 7.5e-05 29_[+1]_43 chr13:50656735-50656815 9e-05 5_[+1]_67 chr17:40229341-40229421 0.00012 66_[+1]_6 chr1:24451638-24451718 0.00012 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGAGAGG width=8 seqs=36 chr1:156675855-156675935 ( 3) CAGAGAGG 1 chr1:167835235-167835315 ( 15) CAGAGAGG 1 chr19:47033145-47033225 ( 46) CAGAGAGG 1 chr10:73119601-73119681 ( 47) CAGAGAGG 1 chr4:38903999-38904079 ( 46) CAGAGAGG 1 chr12:116996365-11699644 ( 40) CAGAGAGG 1 chr1:29187138-29187218 ( 45) CAGAGAGG 1 chr20:36788936-36789016 ( 8) CAGAGAGG 1 chr17:75424113-75424193 ( 68) CAGAGAGG 1 chr6:10404244-10404324 ( 59) CAGAGAGG 1 chr16:87892181-87892261 ( 2) CAGAGAGG 1 chr3:128586468-128586548 ( 16) CAGAGAGG 1 chr17:18917491-18917571 ( 60) CAGAGAGG 1 chr12:125039148-12503922 ( 17) CAGAGAGG 1 chr3:13290293-13290373 ( 33) CAGAGAGG 1 chr1:243420062-243420142 ( 10) CAGAGAGG 1 chr19:832182-832262 ( 32) CAGAGAGG 1 chr6:34537259-34537339 ( 55) CAGAGAGG 1 chr19:4060457-4060537 ( 26) CAGAGAGG 1 chr16:85239019-85239099 ( 53) CAGAGAGG 1 chr11:107727833-10772791 ( 54) CAGAGAAG 1 chr8:145030757-145030837 ( 40) CAGAGAAG 1 chr7:42985807-42985887 ( 17) CAGAGAAG 1 chr12:114135085-11413516 ( 38) CAGAGAAG 1 chr11:72950843-72950923 ( 43) CAGAGAAG 1 chr5:150603346-150603426 ( 45) CAGAGAGA 1 chr20:36789138-36789218 ( 49) CAGAGAGA 1 chr10:72666312-72666392 ( 61) CAGAGAGA 1 chr22:37627093-37627173 ( 12) CAGAGAGA 1 chr20:35463539-35463619 ( 15) CAGAGATG 1 chr17:44061855-44061935 ( 15) CAGAGATG 1 chr16:19130519-19130599 ( 62) AAGAGAGG 1 chr2:146510122-146510202 ( 30) AAGAGAGG 1 chr13:50656735-50656815 ( 6) CAGAGACG 1 chr17:40229341-40229421 ( 67) GAGAGAGG 1 chr1:24451638-24451718 ( 66) CACAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 4.4e-023 -214 186 -318 -1181 203 -1181 -1181 -1181 -1181 -318 195 -1181 203 -1181 -1181 -1181 -1181 -1181 199 -1181 203 -1181 -1181 -1181 -82 -318 162 -217 -114 -1181 182 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.4e-023 0.055556 0.916667 0.027778 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.027778 0.972222 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.138889 0.027778 0.777778 0.055556 0.111111 0.000000 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-1 regular expression -------------------------------------------------------------------------------- CAGAGAGG -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAGC MEME-2 width = 8 sites = 36 llr = 331 E-value = 1.0e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:9:a:1 pos.-specific C 8:a:a::9 probability G :2::::a1 matrix T 2::1:::: bits 2.0 * *** 1.8 * *** 1.6 ***** 1.4 ****** Relative 1.2 ******** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:130624462-130624542 29 1.54e-05 tggggccaac cacacagc ctctctgggc chr20:35463539-35463619 43 1.54e-05 tacccaaggc cacacagc aaacgtggca chr19:49061442-49061522 10 1.54e-05 gcccagggt cacacagc tgccaagcag chr12:111837354-11183743 49 1.54e-05 tctcagaagt cacacagc gtcacttcca chr9:124067593-124067673 5 1.54e-05 agtt cacacagc tagtaaaagg chr3:43731960-43732040 63 1.54e-05 GGCGGGACGC CACACAGC ACCTCGATTA chr1:29187138-29187218 73 1.54e-05 tacttagggt cacacagc chr20:36788936-36789016 36 1.54e-05 tgcctaaggt cacacagc aggtaggcag chr5:150603143-150603223 19 1.54e-05 tgtccatggc cacacagc gaACAGCCCC chr8:145030757-145030837 28 1.54e-05 AAGGTGAGGG CACACAGC TGTTCAGAGA chr16:87892181-87892261 30 1.54e-05 tggtgaaagt cacacagc agttcctggg chr3:128586468-128586548 44 1.54e-05 tgcctgaggc cacacagc tgcacagagg chr12:125039148-12503922 44 1.54e-05 GCCTGAAGGT CACACAGC AAACCAGAGA chr12:114135085-11413516 23 1.54e-05 ttccccccat cacacagc tagtgaacag chr17:21198182-21198262 1 1.54e-05 . cacacagc taggaagggg chr3:13290293-13290373 61 1.54e-05 tgccagaggt cacacagc tgcacagaga chr17:44061855-44061935 48 1.54e-05 GCAGGTGACA CACACAGC ATCCAGAGGT chr1:243420062-243420142 38 1.54e-05 ggccagagcc cacacagc tggttagttg chr19:4060457-4060537 54 1.54e-05 cagtcgaggt cacacagc AGCCCTCTGA chr1:205418674-205418754 51 1.54e-05 cagcacacag cacacagc acagcacagc chr22:37627093-37627173 42 1.54e-05 cgcccaaggt cacacagc aagtgcacag chr4:38903999-38904079 73 3.06e-05 tcaccagcat tacacagc chr6:44042332-44042412 5 7.66e-05 TACA CACACAGA CGTACACACA chr8:915501-915581 42 7.66e-05 CACTGTTCAC CACACAGG GCTCCTGAGC chr2:127412906-127412986 55 7.66e-05 GTTCAGACAT CACACAGG AGAAGCACAG chr11:72950843-72950923 71 7.66e-05 CCACTGCCGC CACACAGA GC chr12:125230899-12523097 73 9.22e-05 ttgagccagt cactcagc chr1:28575177-28575257 4 9.22e-05 AAC CACTCAGC CGACAAAACT chr12:113546562-11354664 7 1.08e-04 taagtc tgcacagc cataagcggc chr6:138132709-138132789 35 1.08e-04 ACGTCGTTGC TGCACAGC ACGTTCAGTG chr16:11237677-11237757 47 1.08e-04 gcacagctag tgcacagc aaagccagtg chr12:122884288-12288436 43 1.08e-04 GACTTACCTG TGCACAGC TGCACTCGCA chr17:46565951-46566031 22 1.08e-04 tttctgatat tgcacagc acatcagaga chr17:75424113-75424193 47 1.38e-04 tcctgtaacc ctcacagc aacccgggag chr11:45828049-45828129 7 1.54e-04 aaaggt cacccagc aagttaggag chr15:67191169-67191249 59 2.62e-04 gtgggtttgc agcacagc tcaagctgga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:130624462-130624542 1.5e-05 28_[+2]_44 chr20:35463539-35463619 1.5e-05 42_[+2]_30 chr19:49061442-49061522 1.5e-05 9_[+2]_63 chr12:111837354-11183743 1.5e-05 48_[+2]_24 chr9:124067593-124067673 1.5e-05 4_[+2]_68 chr3:43731960-43732040 1.5e-05 62_[+2]_10 chr1:29187138-29187218 1.5e-05 72_[+2] chr20:36788936-36789016 1.5e-05 35_[+2]_37 chr5:150603143-150603223 1.5e-05 18_[+2]_54 chr8:145030757-145030837 1.5e-05 27_[+2]_45 chr16:87892181-87892261 1.5e-05 29_[+2]_43 chr3:128586468-128586548 1.5e-05 43_[+2]_29 chr12:125039148-12503922 1.5e-05 43_[+2]_29 chr12:114135085-11413516 1.5e-05 22_[+2]_50 chr17:21198182-21198262 1.5e-05 [+2]_72 chr3:13290293-13290373 1.5e-05 60_[+2]_12 chr17:44061855-44061935 1.5e-05 47_[+2]_25 chr1:243420062-243420142 1.5e-05 37_[+2]_35 chr19:4060457-4060537 1.5e-05 53_[+2]_19 chr1:205418674-205418754 1.5e-05 50_[+2]_22 chr22:37627093-37627173 1.5e-05 41_[+2]_31 chr4:38903999-38904079 3.1e-05 72_[+2] chr6:44042332-44042412 7.7e-05 4_[+2]_68 chr8:915501-915581 7.7e-05 41_[+2]_31 chr2:127412906-127412986 7.7e-05 54_[+2]_18 chr11:72950843-72950923 7.7e-05 70_[+2]_2 chr12:125230899-12523097 9.2e-05 72_[+2] chr1:28575177-28575257 9.2e-05 3_[+2]_69 chr12:113546562-11354664 0.00011 6_[+2]_66 chr6:138132709-138132789 0.00011 34_[+2]_38 chr16:11237677-11237757 0.00011 46_[+2]_26 chr12:122884288-12288436 0.00011 42_[+2]_30 chr17:46565951-46566031 0.00011 21_[+2]_51 chr17:75424113-75424193 0.00014 46_[+2]_26 chr11:45828049-45828129 0.00015 6_[+2]_66 chr15:67191169-67191249 0.00026 58_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAGC width=8 seqs=36 chr9:130624462-130624542 ( 29) CACACAGC 1 chr20:35463539-35463619 ( 43) CACACAGC 1 chr19:49061442-49061522 ( 10) CACACAGC 1 chr12:111837354-11183743 ( 49) CACACAGC 1 chr9:124067593-124067673 ( 5) CACACAGC 1 chr3:43731960-43732040 ( 63) CACACAGC 1 chr1:29187138-29187218 ( 73) CACACAGC 1 chr20:36788936-36789016 ( 36) CACACAGC 1 chr5:150603143-150603223 ( 19) CACACAGC 1 chr8:145030757-145030837 ( 28) CACACAGC 1 chr16:87892181-87892261 ( 30) CACACAGC 1 chr3:128586468-128586548 ( 44) CACACAGC 1 chr12:125039148-12503922 ( 44) CACACAGC 1 chr12:114135085-11413516 ( 23) CACACAGC 1 chr17:21198182-21198262 ( 1) CACACAGC 1 chr3:13290293-13290373 ( 61) CACACAGC 1 chr17:44061855-44061935 ( 48) CACACAGC 1 chr1:243420062-243420142 ( 38) CACACAGC 1 chr19:4060457-4060537 ( 54) CACACAGC 1 chr1:205418674-205418754 ( 51) CACACAGC 1 chr22:37627093-37627173 ( 42) CACACAGC 1 chr4:38903999-38904079 ( 73) TACACAGC 1 chr6:44042332-44042412 ( 5) CACACAGA 1 chr8:915501-915581 ( 42) CACACAGG 1 chr2:127412906-127412986 ( 55) CACACAGG 1 chr11:72950843-72950923 ( 71) CACACAGA 1 chr12:125230899-12523097 ( 73) CACTCAGC 1 chr1:28575177-28575257 ( 4) CACTCAGC 1 chr12:113546562-11354664 ( 7) TGCACAGC 1 chr6:138132709-138132789 ( 35) TGCACAGC 1 chr16:11237677-11237757 ( 47) TGCACAGC 1 chr12:122884288-12288436 ( 43) TGCACAGC 1 chr17:46565951-46566031 ( 22) TGCACAGC 1 chr17:75424113-75424193 ( 47) CTCACAGC 1 chr11:45828049-45828129 ( 7) CACCCAGC 1 chr15:67191169-67191249 ( 59) AGCACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 1.0e-016 -314 167 -1181 -58 171 -1181 -60 -317 -1181 199 -1181 -1181 190 -318 -1181 -217 -1181 199 -1181 -1181 203 -1181 -1181 -1181 -1181 -1181 199 -1181 -214 182 -218 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.0e-016 0.027778 0.805556 0.000000 0.166667 0.805556 0.000000 0.166667 0.027778 0.000000 1.000000 0.000000 0.000000 0.916667 0.027778 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.888889 0.055556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-2 regular expression -------------------------------------------------------------------------------- CACACAGC -------------------------------------------------------------------------------- Time 8.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGTGTG MEME-3 width = 8 sites = 50 llr = 420 E-value = 3.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:2::1: probability G 8::8:a18 matrix T 2:a:a:82 bits 2.0 * 1.8 * ** 1.6 ** ** 1.4 ** ** Relative 1.2 ******* Entropy 1.0 ******** (12.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGTGTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:14205733-14205813 29 1.59e-05 cctcttacac gctgtgtg accttggcca chr1:31376680-31376760 38 1.59e-05 gccacttctg gctgtgtg actttgagta chr17:79652271-79652351 67 1.59e-05 tctctggtga gctgtgtg actcac chr17:74270835-74270915 47 1.59e-05 ccgcttcctg gctgtgtg acctagagca chr17:45726494-45726574 30 1.59e-05 ccattaacca gctgtgtg accttggaca chr8:22043896-22043976 28 1.59e-05 ccacgtactg gctgtgtg gtcttgggga chr12:125230899-12523097 52 1.59e-05 tctcttttta gctgtgtg accttgagcc chr16:88478768-88478848 46 1.59e-05 tctgagccCT gctgtgtg actgcaggca chr8:103540894-103540974 5 1.59e-05 ctgt gctgtgtg ctctgtgctg chr6:161664508-161664588 4 1.59e-05 AAG GCTGTGTG CCCAGAGCCT chr1:15323429-15323509 18 1.59e-05 atgctctgag gctgtgtg ttcccccagg chr15:66937429-66937509 42 1.59e-05 tgcactctgt gctgtgtg agcttgggca chr2:95660828-95660908 4 1.59e-05 tgc gctgtgtg tgctgtgctg chr19:2281718-2281798 34 1.59e-05 CTGGGGCCCT GCTGTGTG ATCCCGAGTG chr9:140795072-140795152 31 1.59e-05 gtgtgtctgt gctgtgtg tccctgtgtt chr15:67078709-67078789 61 1.59e-05 ccacttagca gctgtgtg accttgggca chr19:6825533-6825613 45 1.59e-05 tcccagctct gctgtgtg gcactgggta chr16:27647902-27647982 35 1.59e-05 ACCTCTCTGA GCTGTGTG TCTTGGAGCT chr12:57589860-57589940 55 1.59e-05 AGCAGTGGGC GCTGTGTG GCTGAGGCAC chr16:1241148-1241228 14 1.59e-05 GGCTGGCCTG GCTGTGTG GCCTCAGGCA chr2:240652248-240652328 65 1.59e-05 ttctccaact gctgtgtg accttggg chr19:2281113-2281193 37 1.59e-05 CTGGGCCCCT GCTGTGTG ATCCCGAGTG chr9:124067593-124067673 53 3.18e-05 tctattactt tctgtgtg tcagggactc chr9:100686015-100686095 41 4.78e-05 AGGAGGGACA GCTCTGTG CAGCTGGAGA chr19:11266879-11266959 65 6.36e-05 ccacttacta gctgtgtt accctgga chr1:25413307-25413387 59 6.36e-05 tccttcactg gctgtgtt tctatgggca chr9:132366848-132366928 57 7.96e-05 CAGGAGAGAA GCTGTGGG GAGGCCGAGG chr19:4639084-4639164 69 9.55e-05 CCTGTTGGTG TCTCTGTG CCTC chr1:148000791-148000871 15 9.55e-05 ACAGTACCTg tctctgtg gcgtagtcgg chr16:88847668-88847748 42 9.55e-05 GGAAACTTCC TCTCTGTG GGACCCTGGC chr20:35964720-35964800 49 9.55e-05 CTGGGAGGGA TCTCTGTG GAAGACTTCC chr19:19173839-19173919 32 9.55e-05 gagcttgacc tctctgtg ctctggtttc chr3:4458251-4458331 70 9.55e-05 ttagttaacc tctctgtg cct chr3:138634793-138634873 42 1.11e-04 AAGCAGTGCC TCTGTGTT TGGGGTGGAG chr9:130624462-130624542 8 1.43e-04 ccctgct gctgtgcg acctggggcc chr6:138132709-138132789 2 1.43e-04 T GCTCTGTT AGCTGACCGT chr1:206646340-206646420 11 1.43e-04 CTCTTGTTGT gctgtgcg tccttttggg chr1:203594954-203595034 48 1.59e-04 CTGTTTACAG GCTGTGTA TAAGTGTGCA chr10:17472789-17472869 35 1.75e-04 tttctcccat tctgtggg ttgtctattt chr8:71060602-71060682 50 2.07e-04 TCTGGGAAAA GCTGTGGT AATTGACTAT chr3:5468227-5468307 2 2.07e-04 C GCTGTGGT GTTGACTGAT chr5:180634991-180635071 21 2.07e-04 AGGAtttaaa gctgtggt aaaatatgcc chr10:97884463-97884543 29 2.39e-04 gctgtccacc tctgtgcg gacactccta chr12:111837354-11183743 73 2.39e-04 tccactttag tctctgtt chr16:85239019-85239099 22 2.39e-04 cccagccttg tctctgtt ttgctgataa chr4:77904015-77904095 59 3.02e-04 CCTGGAGACA GTTGTGtg ttttttttgt chr10:72293126-72293206 40 3.02e-04 CCTGTATGTA GGTGTGTG TTTGTGCATT chr1:24451638-24451718 21 3.02e-04 atcatgtaga gctgggtg ctctacctat chr7:157318303-157318383 9 3.50e-04 AAAAGAAG GCCGTGTG CACTGTGGCA chr9:117247533-117247613 73 3.66e-04 aatggtgttg gctctgta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:14205733-14205813 1.6e-05 28_[+3]_44 chr1:31376680-31376760 1.6e-05 37_[+3]_35 chr17:79652271-79652351 1.6e-05 66_[+3]_6 chr17:74270835-74270915 1.6e-05 46_[+3]_26 chr17:45726494-45726574 1.6e-05 29_[+3]_43 chr8:22043896-22043976 1.6e-05 27_[+3]_45 chr12:125230899-12523097 1.6e-05 51_[+3]_21 chr16:88478768-88478848 1.6e-05 45_[+3]_27 chr8:103540894-103540974 1.6e-05 4_[+3]_68 chr6:161664508-161664588 1.6e-05 3_[+3]_69 chr1:15323429-15323509 1.6e-05 17_[+3]_55 chr15:66937429-66937509 1.6e-05 41_[+3]_31 chr2:95660828-95660908 1.6e-05 3_[+3]_69 chr19:2281718-2281798 1.6e-05 33_[+3]_39 chr9:140795072-140795152 1.6e-05 30_[+3]_42 chr15:67078709-67078789 1.6e-05 60_[+3]_12 chr19:6825533-6825613 1.6e-05 44_[+3]_28 chr16:27647902-27647982 1.6e-05 34_[+3]_38 chr12:57589860-57589940 1.6e-05 54_[+3]_18 chr16:1241148-1241228 1.6e-05 13_[+3]_59 chr2:240652248-240652328 1.6e-05 64_[+3]_8 chr19:2281113-2281193 1.6e-05 36_[+3]_36 chr9:124067593-124067673 3.2e-05 52_[+3]_20 chr9:100686015-100686095 4.8e-05 40_[+3]_32 chr19:11266879-11266959 6.4e-05 64_[+3]_8 chr1:25413307-25413387 6.4e-05 58_[+3]_14 chr9:132366848-132366928 8e-05 56_[+3]_16 chr19:4639084-4639164 9.6e-05 68_[+3]_4 chr1:148000791-148000871 9.6e-05 14_[+3]_58 chr16:88847668-88847748 9.6e-05 41_[+3]_31 chr20:35964720-35964800 9.6e-05 48_[+3]_24 chr19:19173839-19173919 9.6e-05 31_[+3]_41 chr3:4458251-4458331 9.6e-05 69_[+3]_3 chr3:138634793-138634873 0.00011 41_[+3]_31 chr9:130624462-130624542 0.00014 7_[+3]_65 chr6:138132709-138132789 0.00014 1_[+3]_71 chr1:206646340-206646420 0.00014 10_[+3]_62 chr1:203594954-203595034 0.00016 47_[+3]_25 chr10:17472789-17472869 0.00017 34_[+3]_38 chr8:71060602-71060682 0.00021 49_[+3]_23 chr3:5468227-5468307 0.00021 1_[+3]_71 chr5:180634991-180635071 0.00021 20_[+3]_52 chr10:97884463-97884543 0.00024 28_[+3]_44 chr12:111837354-11183743 0.00024 72_[+3] chr16:85239019-85239099 0.00024 21_[+3]_51 chr4:77904015-77904095 0.0003 58_[+3]_14 chr10:72293126-72293206 0.0003 39_[+3]_33 chr1:24451638-24451718 0.0003 20_[+3]_52 chr7:157318303-157318383 0.00035 8_[+3]_64 chr9:117247533-117247613 0.00037 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGTGTG width=8 seqs=50 chr19:14205733-14205813 ( 29) GCTGTGTG 1 chr1:31376680-31376760 ( 38) GCTGTGTG 1 chr17:79652271-79652351 ( 67) GCTGTGTG 1 chr17:74270835-74270915 ( 47) GCTGTGTG 1 chr17:45726494-45726574 ( 30) GCTGTGTG 1 chr8:22043896-22043976 ( 28) GCTGTGTG 1 chr12:125230899-12523097 ( 52) GCTGTGTG 1 chr16:88478768-88478848 ( 46) GCTGTGTG 1 chr8:103540894-103540974 ( 5) GCTGTGTG 1 chr6:161664508-161664588 ( 4) GCTGTGTG 1 chr1:15323429-15323509 ( 18) GCTGTGTG 1 chr15:66937429-66937509 ( 42) GCTGTGTG 1 chr2:95660828-95660908 ( 4) GCTGTGTG 1 chr19:2281718-2281798 ( 34) GCTGTGTG 1 chr9:140795072-140795152 ( 31) GCTGTGTG 1 chr15:67078709-67078789 ( 61) GCTGTGTG 1 chr19:6825533-6825613 ( 45) GCTGTGTG 1 chr16:27647902-27647982 ( 35) GCTGTGTG 1 chr12:57589860-57589940 ( 55) GCTGTGTG 1 chr16:1241148-1241228 ( 14) GCTGTGTG 1 chr2:240652248-240652328 ( 65) GCTGTGTG 1 chr19:2281113-2281193 ( 37) GCTGTGTG 1 chr9:124067593-124067673 ( 53) TCTGTGTG 1 chr9:100686015-100686095 ( 41) GCTCTGTG 1 chr19:11266879-11266959 ( 65) GCTGTGTT 1 chr1:25413307-25413387 ( 59) GCTGTGTT 1 chr9:132366848-132366928 ( 57) GCTGTGGG 1 chr19:4639084-4639164 ( 69) TCTCTGTG 1 chr1:148000791-148000871 ( 15) TCTCTGTG 1 chr16:88847668-88847748 ( 42) TCTCTGTG 1 chr20:35964720-35964800 ( 49) TCTCTGTG 1 chr19:19173839-19173919 ( 32) TCTCTGTG 1 chr3:4458251-4458331 ( 70) TCTCTGTG 1 chr3:138634793-138634873 ( 42) TCTGTGTT 1 chr9:130624462-130624542 ( 8) GCTGTGCG 1 chr6:138132709-138132789 ( 2) GCTCTGTT 1 chr1:206646340-206646420 ( 11) GCTGTGCG 1 chr1:203594954-203595034 ( 48) GCTGTGTA 1 chr10:17472789-17472869 ( 35) TCTGTGGG 1 chr8:71060602-71060682 ( 50) GCTGTGGT 1 chr3:5468227-5468307 ( 2) GCTGTGGT 1 chr5:180634991-180635071 ( 21) GCTGTGGT 1 chr10:97884463-97884543 ( 29) TCTGTGCG 1 chr12:111837354-11183743 ( 73) TCTCTGTT 1 chr16:85239019-85239099 ( 22) TCTCTGTT 1 chr4:77904015-77904095 ( 59) GTTGTGTG 1 chr10:72293126-72293206 ( 40) GGTGTGTG 1 chr1:24451638-24451718 ( 21) GCTGGGTG 1 chr7:157318303-157318383 ( 9) GCCGTGTG 1 chr9:117247533-117247613 ( 73) GCTCTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 3.0e-018 -1229 -1229 159 -6 -1229 193 -365 -364 -1229 -366 -1229 197 -1229 -20 163 -1229 -1229 -1229 -365 197 -1229 -1229 199 -1229 -1229 -207 -133 175 -262 -1229 163 -47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 3.0e-018 0.000000 0.000000 0.760000 0.240000 0.000000 0.960000 0.020000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.220000 0.780000 0.000000 0.000000 0.000000 0.020000 0.980000 0.000000 0.000000 1.000000 0.000000 0.000000 0.060000 0.100000 0.840000 0.040000 0.000000 0.780000 0.180000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- [GT]CT[GC]TGTG -------------------------------------------------------------------------------- Time 12.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCTCTG MEME-4 width = 8 sites = 37 llr = 323 E-value = 9.7e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C 89:8:9:: probability G 21:::1:a matrix T ::92a:a: bits 2.0 * * 1.8 * ** 1.6 * ** 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCTCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:130624462-130624542 59 1.61e-05 AACCACACAG CCTCTCTG GGCCCACTTC chr19:14205733-14205813 57 1.61e-05 tggcccttaa cctctctg ggcctGCGCA chr1:31376680-31376760 66 1.61e-05 agtcactgag cctctctg tgcctca chr11:72951053-72951133 56 1.61e-05 agtcactgtc cctctctg ggcctcgctt chr11:75270059-75270139 16 1.61e-05 cttccgttgt cctctctg tatagtgtgg chr17:45726494-45726574 58 1.61e-05 agttccatac cctctctg ggcttcagtt chr8:22043896-22043976 56 1.61e-05 agttgcttaa cctctctg tgcctttgtt chr16:88478768-88478848 32 1.61e-05 cctcgcttaa cctctctg agccCTgctg chr15:66937429-66937509 69 1.61e-05 atgtcatgtc cctctctg gacc chr19:2281718-2281798 19 1.61e-05 GGTTTCCTGC CCTCTCTG GGGCCCTGCT chr19:6825533-6825613 72 1.61e-05 agtcacttaa cctctctg t chr16:27647902-27647982 26 1.61e-05 CTCTGTGTAA CCTCTCTG AGCTGTGTGT chr2:240652248-240652328 1 1.61e-05 . cctctctg tgcGGTACTG chr19:2281113-2281193 22 1.61e-05 GGTTTCCTGT CCTCTCTG GGCCCCTGCT chr19:4639084-4639164 44 3.22e-05 TTGCCTTTTG GCTCTCTG GTCTCTTCCT chr22:42840447-42840527 17 3.22e-05 TGGACTCCCT GCTCTCTG CCAGCCCCTT chr19:50872117-50872197 32 3.22e-05 CGACTTGCTC GCTCTCTG CACCCCACGG chr6:161664508-161664588 72 3.22e-05 agtagcttat gctctctg a chr4:99916262-99916342 22 4.81e-05 CTATGGCTCT CCTTTCTG TGAATGAGCG chr5:156962189-156962269 69 4.81e-05 accctgtcat cctttctg ttgg chr1:206646340-206646420 41 4.81e-05 agttacttaa cctttctg tgcttcacac chr17:46565951-46566031 10 4.81e-05 actgagtga cctttctg atattgcaca chr12:117052162-11705224 69 4.81e-05 atgatgatgt cctttctg ttta chr18:9684169-9684249 1 6.40e-05 . ccactctg caccacagcc chr16:27648108-27648188 5 6.40e-05 gtaa ccactctg agctttggtt chr17:75424113-75424193 25 8.01e-05 agctcagggc cctctgtg catctcctgt chr9:130303559-130303639 55 8.01e-05 gtcagcacca cctctgtg cccagcacgg chr1:12659853-12659933 13 9.62e-05 aagtatttaa cgtctctg agccctagta chr12:122125336-12212541 41 9.62e-05 ggtgaaaccc cgtctctg ccgaaacaaa chr8:91013249-91013329 62 1.44e-04 GGCGCCACGC GCACTCTG CACTTAAACA chr19:19173839-19173919 68 1.44e-04 gagccagtgg tctctctg acctc chr3:5029259-5029339 47 1.44e-04 tatttgccag gcactctg caaagtgctc chr8:103540894-103540974 53 1.76e-04 gcgcgtgtgt gctctgtg ctgtgctccg chr15:51169204-51169284 72 1.76e-04 CCTTGTCTGT CCCCTCTG G chr20:49023428-49023508 6 1.92e-04 cttgg cttctctg aaccctggtt chr12:125230899-12523097 40 2.24e-04 atcctggctc cctctctt tttagctgtg chr1:17452539-17452619 51 2.40e-04 TCAGGGGCCA CCTTTGTG TGAGGTCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:130624462-130624542 1.6e-05 58_[+4]_14 chr19:14205733-14205813 1.6e-05 56_[+4]_16 chr1:31376680-31376760 1.6e-05 65_[+4]_7 chr11:72951053-72951133 1.6e-05 55_[+4]_17 chr11:75270059-75270139 1.6e-05 15_[+4]_57 chr17:45726494-45726574 1.6e-05 57_[+4]_15 chr8:22043896-22043976 1.6e-05 55_[+4]_17 chr16:88478768-88478848 1.6e-05 31_[+4]_41 chr15:66937429-66937509 1.6e-05 68_[+4]_4 chr19:2281718-2281798 1.6e-05 18_[+4]_54 chr19:6825533-6825613 1.6e-05 71_[+4]_1 chr16:27647902-27647982 1.6e-05 25_[+4]_47 chr2:240652248-240652328 1.6e-05 [+4]_72 chr19:2281113-2281193 1.6e-05 21_[+4]_51 chr19:4639084-4639164 3.2e-05 43_[+4]_29 chr22:42840447-42840527 3.2e-05 16_[+4]_56 chr19:50872117-50872197 3.2e-05 31_[+4]_41 chr6:161664508-161664588 3.2e-05 71_[+4]_1 chr4:99916262-99916342 4.8e-05 21_[+4]_51 chr5:156962189-156962269 4.8e-05 68_[+4]_4 chr1:206646340-206646420 4.8e-05 40_[+4]_32 chr17:46565951-46566031 4.8e-05 9_[+4]_63 chr12:117052162-11705224 4.8e-05 68_[+4]_4 chr18:9684169-9684249 6.4e-05 [+4]_72 chr16:27648108-27648188 6.4e-05 4_[+4]_68 chr17:75424113-75424193 8e-05 24_[+4]_48 chr9:130303559-130303639 8e-05 54_[+4]_18 chr1:12659853-12659933 9.6e-05 12_[+4]_60 chr12:122125336-12212541 9.6e-05 40_[+4]_32 chr8:91013249-91013329 0.00014 61_[+4]_11 chr19:19173839-19173919 0.00014 67_[+4]_5 chr3:5029259-5029339 0.00014 46_[+4]_26 chr8:103540894-103540974 0.00018 52_[+4]_20 chr15:51169204-51169284 0.00018 71_[+4]_1 chr20:49023428-49023508 0.00019 5_[+4]_67 chr12:125230899-12523097 0.00022 39_[+4]_33 chr1:17452539-17452619 0.00024 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCTCTG width=8 seqs=37 chr9:130624462-130624542 ( 59) CCTCTCTG 1 chr19:14205733-14205813 ( 57) CCTCTCTG 1 chr1:31376680-31376760 ( 66) CCTCTCTG 1 chr11:72951053-72951133 ( 56) CCTCTCTG 1 chr11:75270059-75270139 ( 16) CCTCTCTG 1 chr17:45726494-45726574 ( 58) CCTCTCTG 1 chr8:22043896-22043976 ( 56) CCTCTCTG 1 chr16:88478768-88478848 ( 32) CCTCTCTG 1 chr15:66937429-66937509 ( 69) CCTCTCTG 1 chr19:2281718-2281798 ( 19) CCTCTCTG 1 chr19:6825533-6825613 ( 72) CCTCTCTG 1 chr16:27647902-27647982 ( 26) CCTCTCTG 1 chr2:240652248-240652328 ( 1) CCTCTCTG 1 chr19:2281113-2281193 ( 22) CCTCTCTG 1 chr19:4639084-4639164 ( 44) GCTCTCTG 1 chr22:42840447-42840527 ( 17) GCTCTCTG 1 chr19:50872117-50872197 ( 32) GCTCTCTG 1 chr6:161664508-161664588 ( 72) GCTCTCTG 1 chr4:99916262-99916342 ( 22) CCTTTCTG 1 chr5:156962189-156962269 ( 69) CCTTTCTG 1 chr1:206646340-206646420 ( 41) CCTTTCTG 1 chr17:46565951-46566031 ( 10) CCTTTCTG 1 chr12:117052162-11705224 ( 69) CCTTTCTG 1 chr18:9684169-9684249 ( 1) CCACTCTG 1 chr16:27648108-27648188 ( 5) CCACTCTG 1 chr17:75424113-75424193 ( 25) CCTCTGTG 1 chr9:130303559-130303639 ( 55) CCTCTGTG 1 chr1:12659853-12659933 ( 13) CGTCTCTG 1 chr12:122125336-12212541 ( 41) CGTCTCTG 1 chr8:91013249-91013329 ( 62) GCACTCTG 1 chr19:19173839-19173919 ( 68) TCTCTCTG 1 chr3:5029259-5029339 ( 47) GCACTCTG 1 chr8:103540894-103540974 ( 53) GCTCTGTG 1 chr15:51169204-51169284 ( 72) CCCCTCTG 1 chr20:49023428-49023508 ( 6) CTTCTCTG 1 chr12:125230899-12523097 ( 40) CCTCTCTT 1 chr1:17452539-17452619 ( 51) CCTTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 9.7e-011 -1185 163 -41 -320 -1185 186 -222 -320 -118 -322 -1185 179 -1185 173 -1185 -62 -1185 -1185 -1185 200 -1185 182 -122 -1185 -1185 -1185 -1185 200 -1185 -1185 195 -320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 9.7e-011 0.000000 0.783784 0.189189 0.027027 0.000000 0.918919 0.054054 0.027027 0.108108 0.027027 0.000000 0.864865 0.000000 0.837838 0.000000 0.162162 0.000000 0.000000 0.000000 1.000000 0.000000 0.891892 0.108108 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.972973 0.027027 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTCTG MEME-4 regular expression -------------------------------------------------------------------------------- CCTCTCTG -------------------------------------------------------------------------------- Time 16.17 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAAACAA MEME-5 width = 8 sites = 11 llr = 108 E-value = 4.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5:aaa2aa pos.-specific C 1::::8:: probability G 4a:::::: matrix T :::::::: bits 2.0 **** ** 1.8 **** ** 1.6 **** ** 1.4 **** ** Relative 1.2 ******* Entropy 1.0 ******* (14.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAACAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:110969840-110969920 18 1.41e-05 catccagtaa agaaacaa tactttgctt chr1:241694842-241694922 24 1.41e-05 CAGGAAGTGA AGAAACAA CTTCATTTAT chr1:2258724-2258804 59 1.41e-05 acacacagac agaaacaa acacagaaac chr9:100686015-100686095 56 1.41e-05 GTGCAGCTGG AGAAACAA GTTTGAAAAT chr20:43540101-43540181 31 1.41e-05 caaacaaaaa aGAAACAA CAACGAAAAT chr20:35463539-35463619 4 2.86e-05 tga ggaaacaa gctcagagat chr15:45493374-45493454 51 2.86e-05 acggcaTTGT GGAAACAA TGGTACGGCA chr2:146510122-146510202 60 2.86e-05 AGTGGAGACA GGAAACAA TTGCTTCATT chr20:52532388-52532468 20 4.23e-05 ACTGGAAGAA AGAAAAAA AAAATCCCAA chr12:122125336-12212541 50 7.09e-05 ccgtctctgc cgaaacaa aatacaaaaa chr3:5468227-5468307 58 7.09e-05 AGAAGTGTCT GGAAAAAA CAGGGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:110969840-110969920 1.4e-05 17_[+5]_55 chr1:241694842-241694922 1.4e-05 23_[+5]_49 chr1:2258724-2258804 1.4e-05 58_[+5]_14 chr9:100686015-100686095 1.4e-05 55_[+5]_17 chr20:43540101-43540181 1.4e-05 30_[+5]_42 chr20:35463539-35463619 2.9e-05 3_[+5]_69 chr15:45493374-45493454 2.9e-05 50_[+5]_22 chr2:146510122-146510202 2.9e-05 59_[+5]_13 chr20:52532388-52532468 4.2e-05 19_[+5]_53 chr12:122125336-12212541 7.1e-05 49_[+5]_23 chr3:5468227-5468307 7.1e-05 57_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAAACAA width=8 seqs=11 chr7:110969840-110969920 ( 18) AGAAACAA 1 chr1:241694842-241694922 ( 24) AGAAACAA 1 chr1:2258724-2258804 ( 59) AGAAACAA 1 chr9:100686015-100686095 ( 56) AGAAACAA 1 chr20:43540101-43540181 ( 31) AGAAACAA 1 chr20:35463539-35463619 ( 4) GGAAACAA 1 chr15:45493374-45493454 ( 51) GGAAACAA 1 chr2:146510122-146510202 ( 60) GGAAACAA 1 chr20:52532388-52532468 ( 20) AGAAAAAA 1 chr12:122125336-12212541 ( 50) CGAAACAA 1 chr3:5468227-5468307 ( 58) GGAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 4.0e+004 115 -147 53 -1010 -1010 -1010 199 -1010 203 -1010 -1010 -1010 203 -1010 -1010 -1010 203 -1010 -1010 -1010 -43 169 -1010 -1010 203 -1010 -1010 -1010 203 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.0e+004 0.545455 0.090909 0.363636 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAACAA MEME-5 regular expression -------------------------------------------------------------------------------- [AG]GAAACAA -------------------------------------------------------------------------------- Time 19.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:37627093-37627173 2.12e-04 11_[+1(4.48e-05)]_22_[+2(1.54e-05)]_\ 31 chr19:2281113-2281193 1.22e-03 21_[+4(1.61e-05)]_7_[+3(1.59e-05)]_\ 20_[+4(1.61e-05)]_8 chr7:130596008-130596088 1.49e-01 80 chr1:24451638-24451718 6.92e-03 80 chr15:67191169-67191249 1.17e-01 80 chr2:240652248-240652328 1.54e-04 [+4(1.61e-05)]_56_[+3(1.59e-05)]_8 chr21:39189658-39189738 5.97e-01 80 chr8:143079555-143079635 1.42e-01 80 chr6:35467245-35467325 4.38e-01 80 chr6:35467444-35467524 7.18e-01 80 chr16:85239019-85239099 8.75e-05 52_[+1(1.52e-05)]_20 chr1:205418674-205418754 1.33e-01 43_[+2(1.54e-05)]_29 chr17:78494802-78494882 1.66e-01 80 chr5:171845207-171845287 9.70e-01 80 chr20:31901942-31902022 5.80e-01 80 chr10:81176380-81176460 5.23e-01 80 chr22:28065167-28065247 1.25e-01 80 chrX:12789674-12789754 1.40e-01 80 chr11:44623733-44623813 2.16e-01 80 chr10:72666312-72666392 6.72e-02 60_[+1(4.48e-05)]_12 chr19:4060457-4060537 4.19e-05 25_[+1(1.52e-05)]_20_[+2(1.54e-05)]_\ 19 chr1:33355605-33355685 7.88e-02 80 chr12:117052162-11705224 2.47e-02 68_[+4(4.81e-05)]_4 chr19:3236458-3236538 8.73e-01 80 chr10:119171727-11917180 5.75e-01 80 chr11:72950843-72950923 9.04e-04 42_[+1(3.00e-05)]_20_[+2(7.66e-05)]_\ 2 chr15:41324104-41324184 5.98e-01 80 chr17:46565951-46566031 5.68e-05 9_[+4(4.81e-05)]_63 chr20:35964516-35964596 1.46e-01 80 chr7:44690039-44690119 8.88e-01 80 chr16:1241148-1241228 2.15e-03 13_[+3(1.59e-05)]_45_[+3(1.59e-05)]_\ 6 chr20:47295709-47295789 6.55e-01 80 chr9:132366848-132366928 1.73e-02 56_[+3(7.96e-05)]_16 chr3:197161000-197161080 8.77e-01 80 chr12:57589860-57589940 1.89e-02 54_[+3(1.59e-05)]_18 chr6:36089691-36089771 8.87e-01 80 chr16:27647902-27647982 1.18e-03 12_[+4(3.22e-05)]_5_[+4(1.61e-05)]_\ 1_[+3(1.59e-05)]_20_[+4(1.61e-05)]_1_[+3(1.59e-05)]_1 chr19:6825533-6825613 2.67e-04 44_[+3(1.59e-05)]_19_[+4(1.61e-05)]_\ 1 chr16:88532856-88532936 1.75e-01 80 chr15:67078709-67078789 3.12e-02 60_[+3(1.59e-05)]_12 chr9:130303559-130303639 1.20e-02 54_[+4(8.01e-05)]_18 chr3:4458251-4458331 6.47e-03 67_[+4(1.61e-05)]_5 chr20:30945187-30945267 5.22e-01 80 chr3:193569346-193569426 7.13e-02 80 chr9:140795072-140795152 2.80e-02 9_[+3(9.55e-05)]_[+3(3.18e-05)]_5_\ [+3(1.59e-05)]_22_[+3(9.55e-05)]_12 chr6:34537259-34537339 3.82e-02 54_[+1(1.52e-05)]_18 chr19:2281718-2281798 1.22e-03 18_[+4(1.61e-05)]_7_[+3(1.59e-05)]_\ 20_[+4(1.61e-05)]_11 chr10:72293126-72293206 2.72e-01 80 chr11:45828049-45828129 5.45e-02 80 chr19:832182-832262 9.40e-03 31_[+1(1.52e-05)]_41 chr4:24994749-24994829 8.20e-01 80 chr1:243420062-243420142 1.72e-03 9_[+1(1.52e-05)]_20_[+2(1.54e-05)]_\ 35 chr17:44061855-44061935 3.78e-03 14_[+1(5.99e-05)]_9_[+2(1.54e-05)]_\ 8_[+2(1.54e-05)]_25 chr12:122884288-12288436 1.37e-01 80 chr19:4161532-4161612 8.50e-01 80 chr15:70492500-70492580 7.19e-02 52_[+5(8.51e-05)]_20 chr3:13290293-13290373 2.02e-03 32_[+1(1.52e-05)]_20_[+2(1.54e-05)]_\ 4_[+1(4.48e-05)] chr17:21198182-21198262 4.49e-02 [+2(1.54e-05)]_72 chr12:114135085-11413516 4.29e-04 22_[+2(1.54e-05)]_7_[+1(3.00e-05)]_\ 35 chr1:25413307-25413387 2.44e-02 58_[+3(6.36e-05)]_14 chr2:95660828-95660908 9.95e-02 3_[+3(1.59e-05)]_11_[+3(1.59e-05)]_\ 6_[+3(1.59e-05)]_1_[+3(1.59e-05)]_10_[+3(1.59e-05)]_9 chr6:135466370-135466450 1.29e-01 80 chr7:1627513-1627593 3.34e-01 80 chr22:35779448-35779528 2.81e-01 80 chr1:28575177-28575257 6.13e-02 3_[+2(9.22e-05)]_69 chr2:127412906-127412986 2.28e-02 54_[+2(7.66e-05)]_18 chr20:49822928-49823008 2.19e-01 80 chr17:71221040-71221120 5.66e-01 80 chr9:116412296-116412376 6.01e-01 80 chr15:51169204-51169284 9.72e-02 80 chr12:125039148-12503922 5.53e-04 16_[+1(1.52e-05)]_19_[+2(1.54e-05)]_\ 29 chr7:42985807-42985887 6.55e-04 16_[+1(3.00e-05)]_56 chr9:135864150-135864230 4.01e-01 80 chr15:69744522-69744602 8.85e-01 80 chr16:27648108-27648188 4.70e-02 4_[+4(6.40e-05)]_68 chr18:9684169-9684249 6.88e-02 [+4(6.40e-05)]_72 chr15:66937429-66937509 1.45e-03 41_[+3(1.59e-05)]_19_[+4(1.61e-05)]_\ 4 chr3:5029259-5029339 8.82e-02 80 chr1:15323429-15323509 5.43e-02 17_[+3(1.59e-05)]_55 chr17:27539361-27539441 7.70e-01 80 chr19:19173839-19173919 5.49e-03 29_[+4(1.61e-05)]_43 chr17:18917491-18917571 7.33e-02 59_[+1(1.52e-05)]_13 chr8:915501-915581 2.86e-02 41_[+2(7.66e-05)]_31 chr6:161664508-161664588 1.27e-04 3_[+3(1.59e-05)]_60_[+4(3.22e-05)]_\ 1 chr3:156848492-156848572 2.74e-01 80 chr12:34174948-34175028 7.36e-01 80 chr12:108565991-10856607 1.55e-01 80 chr12:108999462-10899954 8.83e-01 80 chr3:128586468-128586548 1.73e-03 15_[+1(1.52e-05)]_20_[+2(1.54e-05)]_\ 29 chr8:103540894-103540974 1.37e-02 4_[+3(1.59e-05)]_20_[+3(1.59e-05)]_\ 12_[+3(4.78e-05)]_20 chr10:80883991-80884071 7.89e-01 80 chr9:129467860-129467940 6.05e-01 80 chr20:43540101-43540181 2.97e-02 30_[+5(1.41e-05)]_42 chr19:50872117-50872197 3.12e-02 31_[+4(3.22e-05)]_41 chr16:11237677-11237757 1.65e-01 80 chr12:51159240-51159320 2.98e-01 80 chr3:49466878-49466958 3.49e-01 80 chr6:138258034-138258114 8.35e-01 80 chr16:87892181-87892261 8.00e-04 1_[+1(1.52e-05)]_20_[+2(1.54e-05)]_\ 43 chr6:138258243-138258323 5.39e-01 80 chr1:161457015-161457095 4.28e-02 80 chr8:145030757-145030837 4.05e-04 27_[+2(1.54e-05)]_4_[+1(3.00e-05)]_\ 3_[+2(1.54e-05)]_22 chr16:88478768-88478848 1.46e-03 31_[+4(1.61e-05)]_6_[+3(1.59e-05)]_\ 27 chr12:125230899-12523097 2.61e-04 51_[+3(1.59e-05)]_13_[+2(9.22e-05)] chr10:17472789-17472869 6.26e-03 80 chr9:123838010-123838090 9.48e-01 80 chr12:108999996-10900007 8.90e-01 80 chr1:16874154-16874234 2.25e-01 80 chr9:100686015-100686095 9.06e-05 40_[+3(4.78e-05)]_7_[+5(1.41e-05)]_\ 17 chr5:150603143-150603223 1.18e-02 18_[+2(1.54e-05)]_54 chr5:89825856-89825936 7.45e-01 80 chr6:10404244-10404324 1.08e-02 58_[+1(1.52e-05)]_14 chr1:2258724-2258804 3.62e-04 1_[+2(7.66e-05)]_5_[+5(1.41e-05)]_\ 17_[+2(7.66e-05)]_2_[+2(7.66e-05)]_1_[+5(1.41e-05)]_14 chr5:172198974-172199054 1.30e-01 80 chr17:74016071-74016151 6.67e-01 80 chr17:75424113-75424193 3.16e-05 24_[+4(8.01e-05)]_35_[+1(1.52e-05)]_\ 5 chr3:45097178-45097258 2.06e-01 80 chr9:100566351-100566431 3.77e-01 80 chr1:17452539-17452619 8.56e-02 80 chr9:127251057-127251137 5.30e-01 80 chr20:55993065-55993145 8.05e-01 80 chr3:138634793-138634873 1.93e-02 39_[+4(8.01e-05)]_33 chr7:157318303-157318383 1.05e-02 80 chr20:35964720-35964800 3.69e-02 48_[+3(9.55e-05)]_24 chr8:22043896-22043976 7.86e-04 27_[+3(1.59e-05)]_20_[+4(1.61e-05)]_\ 17 chr19:50860545-50860625 7.40e-01 80 chr6:109704528-109704608 1.16e-01 80 chr20:36788936-36789016 1.86e-03 7_[+1(1.52e-05)]_20_[+2(1.54e-05)]_\ 37 chr1:206646340-206646420 1.91e-02 40_[+4(4.81e-05)]_32 chr1:16339956-16340036 3.06e-01 80 chr2:85839525-85839605 5.19e-01 80 chr20:36267128-36267208 4.28e-02 80 chr19:11266879-11266959 4.59e-02 64_[+3(6.36e-05)]_8 chr1:29187138-29187218 1.97e-04 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chr17:79652271-79652351 3.53e-03 66_[+3(1.59e-05)]_6 chr11:75270059-75270139 2.48e-02 15_[+4(1.61e-05)]_57 chr8:91013249-91013329 3.65e-02 80 chr7:129650765-129650845 4.39e-01 80 chr1:21503229-21503309 6.69e-01 80 chr6:44042332-44042412 4.53e-03 4_[+2(7.66e-05)]_68 chr9:100686225-100686305 6.06e-02 80 chr11:57503338-57503418 8.39e-02 80 chr15:79152923-79153003 3.87e-01 80 chr1:203594954-203595034 2.91e-01 80 chr9:124067593-124067673 2.50e-04 4_[+2(1.54e-05)]_40_[+3(3.18e-05)]_\ 20 chr5:156962189-156962269 4.39e-02 68_[+4(4.81e-05)]_4 chr1:241694842-241694922 3.21e-02 23_[+5(1.41e-05)]_49 chr12:116996365-11699644 2.36e-02 39_[+1(1.52e-05)]_33 chr5:180634991-180635071 1.19e-01 80 chr4:38903999-38904079 1.06e-03 45_[+1(1.52e-05)]_19_[+2(3.06e-05)] chr11:72951053-72951133 1.25e-02 55_[+4(1.61e-05)]_17 chr22:42840447-42840527 8.08e-02 16_[+4(3.22e-05)]_56 chr2:158114064-158114144 3.50e-03 80 chr1:161536192-161536272 2.89e-01 80 chr17:8022469-8022549 5.67e-01 80 chr16:88847668-88847748 3.71e-04 39_[+4(1.61e-05)]_33 chr20:46236079-46236159 8.69e-01 80 chr19:49056995-49057075 7.03e-02 80 chr1:148000791-148000871 3.50e-02 14_[+3(9.55e-05)]_58 chr1:31376680-31376760 6.03e-04 37_[+3(1.59e-05)]_20_[+4(1.61e-05)]_\ 7 chr10:73119601-73119681 3.16e-02 46_[+1(1.52e-05)]_26 chr6:31461752-31461832 5.64e-01 80 chr3:5468227-5468307 1.32e-02 57_[+5(7.09e-05)]_15 chr1:113615505-113615585 7.49e-02 80 chr17:37310743-37310823 7.71e-01 80 chr19:47839482-47839562 4.67e-01 80 chr6:27863332-27863412 1.37e-01 80 chr16:85626393-85626473 9.99e-01 80 chr7:145716635-145716715 6.51e-01 80 chr20:36789138-36789218 3.29e-02 48_[+1(4.48e-05)]_24 chr1:149680185-149680265 5.14e-01 80 chr12:111837354-11183743 1.01e-03 48_[+2(1.54e-05)]_24 chr6:139696801-139696881 2.41e-01 80 chr1:149294643-149294723 8.76e-01 80 chr8:71060403-71060483 4.25e-01 80 chr8:71060602-71060682 1.25e-01 80 chr3:45103394-45103474 8.45e-01 80 chr7:110969840-110969920 3.04e-02 17_[+5(1.41e-05)]_55 chr19:49061442-49061522 1.23e-02 9_[+2(1.54e-05)]_63 chr1:184942790-184942870 4.63e-01 80 chr3:4392689-4392769 7.36e-02 80 chr16:19130519-19130599 1.12e-01 61_[+1(7.47e-05)]_11 chr4:15651666-15651746 6.79e-02 80 chr10:97884463-97884543 2.13e-03 26_[+4(8.01e-05)]_46 chr19:14205733-14205813 1.86e-03 28_[+3(1.59e-05)]_20_[+4(1.61e-05)]_\ 16 chr10:32236606-32236686 1.64e-01 80 chr19:47033145-47033225 4.68e-02 45_[+1(1.52e-05)]_27 chr6:138132709-138132789 8.99e-04 80 chr6:37178288-37178368 7.65e-01 80 chr1:113683407-113683487 4.74e-01 80 chr3:45103595-45103675 2.83e-01 80 chr12:122125336-12212541 7.01e-03 40_[+4(9.62e-05)]_1_[+5(7.09e-05)]_\ 23 chr6:30845567-30845647 9.87e-01 80 chr15:45493374-45493454 4.13e-02 50_[+5(2.86e-05)]_22 chr4:77904015-77904095 1.86e-01 80 chr12:113546562-11354664 1.04e-01 80 chr6:28918800-28918880 5.67e-01 80 chr16:87905289-87905369 5.83e-01 80 chr1:12659853-12659933 6.15e-02 12_[+4(9.62e-05)]_60 chr6:27559592-27559672 4.61e-01 80 chr22:36635408-36635488 9.80e-01 80 chr1:204475642-204475722 5.67e-01 80 chr6:37175853-37175933 5.80e-01 80 chr6:27515524-27515604 8.37e-01 80 chr19:41403326-41403406 4.54e-01 80 chr7:111126720-111126800 8.37e-01 80 chr18:3447811-3447891 6.97e-01 80 chr6:28323985-28324065 6.11e-01 80 chr17:49027822-49027902 7.38e-01 80 chr17:80231416-80231496 9.91e-01 80 chr12:125406294-12540637 6.13e-01 80 chr4:99916262-99916342 6.96e-03 21_[+4(4.81e-05)]_51 chr20:35463539-35463619 8.78e-06 3_[+5(2.86e-05)]_3_[+1(5.99e-05)]_\ 20_[+2(1.54e-05)]_30 chr17:78120850-78120930 8.04e-01 80 chr5:150603346-150603426 2.68e-02 44_[+1(4.48e-05)]_28 chr6:26521501-26521581 4.22e-01 80 chr2:178029535-178029615 1.55e-01 80 chr1:161500093-161500173 6.13e-01 80 chr6:30684786-30684866 2.09e-01 80 chr19:4639084-4639164 4.28e-03 43_[+4(3.22e-05)]_17_[+3(9.55e-05)]_\ 4 chr1:167835235-167835315 2.63e-02 14_[+1(1.52e-05)]_58 chr1:156675855-156675935 8.82e-03 2_[+1(1.52e-05)]_70 chr8:67025596-67025676 2.69e-01 80 chr20:49023428-49023508 1.00e-01 80 chr9:130624462-130624542 6.32e-05 28_[+2(1.54e-05)]_15_[+2(1.54e-05)]_\ 21 chr2:26074813-26074893 1.05e-02 9_[+5(7.09e-05)]_19_[+5(7.09e-05)]_\ 36 chr1:182270978-182271058 8.79e-01 80 chr5:180634790-180634870 6.50e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************