******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/BRCA1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:61994305-61994385 1.0000 80 chr13:62537289-62537369 1.0000 80 chr13:62700692-62700772 1.0000 80 chr13:62472525-62472605 1.0000 80 chr7:151571167-151571247 1.0000 80 chr13:62624284-62624364 1.0000 80 chr13:62455621-62455701 1.0000 80 chr9:82062280-82062360 1.0000 80 chr21:16263976-16264056 1.0000 80 chr9:81976762-81976842 1.0000 80 chr13:62659020-62659100 1.0000 80 chr13:62371689-62371769 1.0000 80 chr13:63386480-63386560 1.0000 80 chrX:466774-466854 1.0000 80 chr13:62435878-62435958 1.0000 80 chr13:66117988-66118068 1.0000 80 chr13:67771995-67772075 1.0000 80 chr13:64203063-64203143 1.0000 80 chr1:236776472-236776552 1.0000 80 chr13:62504262-62504342 1.0000 80 chr9:82064126-82064206 1.0000 80 chr13:62738817-62738897 1.0000 80 chr13:62670944-62671024 1.0000 80 chr13:62694082-62694162 1.0000 80 chr2:182742748-182742828 1.0000 80 chr13:64648621-64648701 1.0000 80 chr13:62721717-62721797 1.0000 80 chr13:66186766-66186846 1.0000 80 chr13:64004675-64004755 1.0000 80 chr13:62361824-62361904 1.0000 80 chr13:66706055-66706135 1.0000 80 chr13:62737728-62737808 1.0000 80 chr13:67133383-67133463 1.0000 80 chr7:136075289-136075369 1.0000 80 chr1:80038145-80038225 1.0000 80 chr13:62434427-62434507 1.0000 80 chr13:66216592-66216672 1.0000 80 chr13:67320467-67320547 1.0000 80 chr13:62396643-62396723 1.0000 80 chr13:63039790-63039870 1.0000 80 chr9:82320803-82320883 1.0000 80 chr13:66883674-66883754 1.0000 80 chr13:65873995-65874075 1.0000 80 chr13:67748291-67748371 1.0000 80 chrX:143558142-143558222 1.0000 80 chr13:62604507-62604587 1.0000 80 chr13:78769956-78770036 1.0000 80 chr18:32811538-32811618 1.0000 80 chr1:233845386-233845466 1.0000 80 chr13:62657564-62657644 1.0000 80 chr13:67151293-67151373 1.0000 80 chr13:64024045-64024125 1.0000 80 chr13:67567308-67567388 1.0000 80 chr13:66134817-66134897 1.0000 80 chr13:63108068-63108148 1.0000 80 chr1:244070347-244070427 1.0000 80 chr13:68357474-68357554 1.0000 80 chr13:64006217-64006297 1.0000 80 chr13:62696707-62696787 1.0000 80 chr13:63557685-63557765 1.0000 80 chr13:67679166-67679246 1.0000 80 chr17:69605624-69605704 1.0000 80 chr13:62593162-62593242 1.0000 80 chr21:9853810-9853890 1.0000 80 chr6:12784563-12784643 1.0000 80 chr13:64019841-64019921 1.0000 80 chr13:82596451-82596531 1.0000 80 chr13:63699361-63699441 1.0000 80 chr13:73270729-73270809 1.0000 80 chr13:89666459-89666539 1.0000 80 chr13:64646063-64646143 1.0000 80 chr13:62669423-62669503 1.0000 80 chr13:62383857-62383937 1.0000 80 chr13:68288302-68288382 1.0000 80 chr13:62425038-62425118 1.0000 80 chr1:226445410-226445490 1.0000 80 chr1:93088720-93088800 1.0000 80 chr4:114613724-114613804 1.0000 80 chr13:66219848-66219928 1.0000 80 chr13:62550231-62550311 1.0000 80 chr13:62592232-62592312 1.0000 80 chr13:62745135-62745215 1.0000 80 chr1:230451770-230451850 1.0000 80 chr13:62373756-62373836 1.0000 80 chr5:171116929-171117009 1.0000 80 chr13:62746020-62746100 1.0000 80 chr13:66155529-66155609 1.0000 80 chr13:62390272-62390352 1.0000 80 chr13:62531566-62531646 1.0000 80 chr13:67717183-67717263 1.0000 80 chr13:67683874-67683954 1.0000 80 chr13:62489841-62489921 1.0000 80 chr22:29065696-29065776 1.0000 80 chr1:227029723-227029803 1.0000 80 chr13:62557206-62557286 1.0000 80 chr1:142602044-142602124 1.0000 80 chr1:227487161-227487241 1.0000 80 chr13:62634850-62634930 1.0000 80 chr13:67278312-67278392 1.0000 80 chr13:64286150-64286230 1.0000 80 chr5:54456374-54456454 1.0000 80 chr13:68877875-68877955 1.0000 80 chr13:67478839-67478919 1.0000 80 chr13:64810980-64811060 1.0000 80 chr13:62457946-62458026 1.0000 80 chr10:127575065-12757514 1.0000 80 chr9:82067374-82067454 1.0000 80 chr9:82109255-82109335 1.0000 80 chr13:65599438-65599518 1.0000 80 chr13:62710779-62710859 1.0000 80 chr13:92897842-92897922 1.0000 80 chr1:92463336-92463416 1.0000 80 chr13:64245762-64245842 1.0000 80 chr13:68047848-68047928 1.0000 80 chr1:227383370-227383450 1.0000 80 chr1:93546482-93546562 1.0000 80 chr4:108229008-108229088 1.0000 80 chr13:64133563-64133643 1.0000 80 chr13:65951029-65951109 1.0000 80 chr13:67968812-67968892 1.0000 80 chr13:67264160-67264240 1.0000 80 chr13:79387250-79387330 1.0000 80 chr1:242420235-242420315 1.0000 80 chr1:197277966-197278046 1.0000 80 chr13:67173344-67173424 1.0000 80 chr13:62708529-62708609 1.0000 80 chr13:67981977-67982057 1.0000 80 chr21:18873933-18874013 1.0000 80 chr13:66512930-66513010 1.0000 80 chr13:67552966-67553046 1.0000 80 chr9:82310371-82310451 1.0000 80 chr13:62446070-62446150 1.0000 80 chr1:84358314-84358394 1.0000 80 chr13:62409374-62409454 1.0000 80 chr13:67485940-67486020 1.0000 80 chr1:226954451-226954531 1.0000 80 chr13:62735662-62735742 1.0000 80 chr13:65816988-65817068 1.0000 80 chr13:87216602-87216682 1.0000 80 chr18:33645524-33645604 1.0000 80 chrX:2033261-2033341 1.0000 80 chr13:66274814-66274894 1.0000 80 chr22:30362735-30362815 1.0000 80 chr13:66989751-66989831 1.0000 80 chr13:63882862-63882942 1.0000 80 chr13:67234925-67235005 1.0000 80 chr13:89417757-89417837 1.0000 80 chr13:67823894-67823974 1.0000 80 chr13:62336094-62336174 1.0000 80 chr13:68308989-68309069 1.0000 80 chr17:49124555-49124635 1.0000 80 chr13:63412857-63412937 1.0000 80 chr13:62539498-62539578 1.0000 80 chr13:68065449-68065529 1.0000 80 chr13:62422580-62422660 1.0000 80 chr13:66188175-66188255 1.0000 80 chr1:62505028-62505108 1.0000 80 chr13:63716810-63716890 1.0000 80 chr22:39517827-39517907 1.0000 80 chr7:125785153-125785233 1.0000 80 chr2:68744823-68744903 1.0000 80 chr18:30818409-30818489 1.0000 80 chr13:62410745-62410825 1.0000 80 chr13:76112610-76112690 1.0000 80 chr13:67131635-67131715 1.0000 80 chr13:68925774-68925854 1.0000 80 chr22:28975261-28975341 1.0000 80 chr13:93312702-93312782 1.0000 80 chr13:63768867-63768947 1.0000 80 chr13:68051460-68051540 1.0000 80 chr1:225734073-225734153 1.0000 80 chr13:62603137-62603217 1.0000 80 chr13:65035742-65035822 1.0000 80 chr13:65326382-65326462 1.0000 80 chr13:63331287-63331367 1.0000 80 chr13:63405745-63405825 1.0000 80 chr13:70256227-70256307 1.0000 80 chr13:87994092-87994172 1.0000 80 chr1:229103705-229103785 1.0000 80 chr13:70418270-70418350 1.0000 80 chr13:62580313-62580393 1.0000 80 chr13:65660658-65660738 1.0000 80 chr6:150725477-150725557 1.0000 80 chr6:12260767-12260847 1.0000 80 chr7:85819864-85819944 1.0000 80 chr13:63653953-63654033 1.0000 80 chr11:93971700-93971780 1.0000 80 chr13:74365369-74365449 1.0000 80 chr13:94916679-94916759 1.0000 80 chr13:64596465-64596545 1.0000 80 chr13:62636021-62636101 1.0000 80 chr13:87807511-87807591 1.0000 80 chr1:228573092-228573172 1.0000 80 chr13:66147634-66147714 1.0000 80 chr9:82270821-82270901 1.0000 80 chr21:11141441-11141521 1.0000 80 chr1:70810443-70810523 1.0000 80 chr2:80589092-80589172 1.0000 80 chr13:85491362-85491442 1.0000 80 chr13:75561585-75561665 1.0000 80 chr13:63919858-63919938 1.0000 80 chr13:62577744-62577824 1.0000 80 chr13:67657269-67657349 1.0000 80 chr13:67806647-67806727 1.0000 80 chr9:82194526-82194606 1.0000 80 chr13:63757070-63757150 1.0000 80 chr16:16582944-16583024 1.0000 80 chr13:62584572-62584652 1.0000 80 chr9:81871982-81872062 1.0000 80 chr13:79946663-79946743 1.0000 80 chr13:67580884-67580964 1.0000 80 chr5:88363342-88363422 1.0000 80 chr13:64344525-64344605 1.0000 80 chr10:15837210-15837290 1.0000 80 chr9:82060223-82060303 1.0000 80 chr13:68334230-68334310 1.0000 80 chr13:62594150-62594230 1.0000 80 chr13:62743858-62743938 1.0000 80 chr19:30239451-30239531 1.0000 80 chr13:64461036-64461116 1.0000 80 chr13:62695204-62695284 1.0000 80 chr13:67570901-67570981 1.0000 80 chrX:15912990-15913070 1.0000 80 chr13:67470580-67470660 1.0000 80 chr13:85736098-85736178 1.0000 80 chr13:81833726-81833806 1.0000 80 chr13:70712687-70712767 1.0000 80 chr3:1084131-1084211 1.0000 80 chr13:67794658-67794738 1.0000 80 chrX:102570952-102571032 1.0000 80 chr13:63356737-63356817 1.0000 80 chr21:18343478-18343558 1.0000 80 chr1:151416479-151416559 1.0000 80 chr13:67408995-67409075 1.0000 80 chr13:86916187-86916267 1.0000 80 chr1:225712701-225712781 1.0000 80 chr20:17942247-17942327 1.0000 80 chr13:67488909-67488989 1.0000 80 chr1:144924632-144924712 1.0000 80 chr13:79138648-79138728 1.0000 80 chr13:62929637-62929717 1.0000 80 chr7:150582577-150582657 1.0000 80 chr13:64774357-64774437 1.0000 80 chr9:82188711-82188791 1.0000 80 chr1:59194593-59194673 1.0000 80 chr13:70701248-70701328 1.0000 80 chr9:82193285-82193365 1.0000 80 chr13:62547132-62547212 1.0000 80 chr1:240726210-240726290 1.0000 80 chr13:68172272-68172352 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_BRCA1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/BRCA1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.371 C 0.139 G 0.137 T 0.353 Background letter frequencies (from file dataset with add-one prior applied): A 0.371 C 0.139 G 0.137 T 0.353 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KCTCCTGS MEME-1 width = 8 sites = 9 llr = 96 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C :9:6a::4 probability G 7::2::a6 matrix T 3:a2:a:: bits 2.9 * * 2.6 * * 2.3 * * * 2.0 * * ** Relative 1.7 * * ** Entropy 1.4 *** **** (15.4 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCTCCTGG consensus T G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:75561585-75561665 67 8.61e-07 CCATCTGGCT GCTCCTGG ATTAGT chr13:62746020-62746100 30 2.58e-06 aacaaccgat gctgctgg tgaggctgca chr9:82193285-82193365 42 3.44e-06 GTTCTTCTTG GCTGCTGC TAGCCACAGA chr17:49124555-49124635 39 7.91e-06 TGTGCTATTC TCTCCTGC AGCATTCCAA chr13:64024045-64024125 73 7.91e-06 gcttaaaaac tctcctgc chr13:62659020-62659100 65 7.91e-06 AAATATACTT TCTCCTGC ATATCAGT chr13:62383857-62383937 35 1.01e-05 taagaaaggg gcttctgg tgttaagtaa chr13:62361824-62361904 49 1.01e-05 TTTTGTATCT GCTTCTGG GCAACTGAAA chr13:62409374-62409454 31 1.90e-05 ATCAATTGCA GATCCTGG GACAATGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:75561585-75561665 8.6e-07 66_[+1]_6 chr13:62746020-62746100 2.6e-06 29_[+1]_43 chr9:82193285-82193365 3.4e-06 41_[+1]_31 chr17:49124555-49124635 7.9e-06 38_[+1]_34 chr13:64024045-64024125 7.9e-06 72_[+1] chr13:62659020-62659100 7.9e-06 64_[+1]_8 chr13:62383857-62383937 1e-05 34_[+1]_38 chr13:62361824-62361904 1e-05 48_[+1]_24 chr13:62409374-62409454 1.9e-05 30_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCTCCTGS width=8 seqs=9 chr13:75561585-75561665 ( 67) GCTCCTGG 1 chr13:62746020-62746100 ( 30) GCTGCTGG 1 chr9:82193285-82193365 ( 42) GCTGCTGC 1 chr17:49124555-49124635 ( 39) TCTCCTGC 1 chr13:64024045-64024125 ( 73) TCTCCTGC 1 chr13:62659020-62659100 ( 65) TCTCCTGC 1 chr13:62383857-62383937 ( 35) GCTTCTGG 1 chr13:62361824-62361904 ( 49) GCTTCTGG 1 chr13:62409374-62409454 ( 31) GATCCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 1.2e+003 -982 -982 228 -8 -173 268 -982 -982 -982 -982 -982 150 -982 200 69 -67 -982 285 -982 -982 -982 -982 -982 150 -982 -982 286 -982 -982 168 202 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+003 0.000000 0.000000 0.666667 0.333333 0.111111 0.888889 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.555556 0.222222 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.555556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTCCTGS MEME-1 regular expression -------------------------------------------------------------------------------- [GT]CT[CGT]CTG[GC] -------------------------------------------------------------------------------- Time 5.23 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGTRTGT MEME-2 width = 8 sites = 45 llr = 345 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:::5:2: pos.-specific C ::::1::: probability G 41a:4:6: matrix T :9:a:a2a bits 2.9 * 2.6 * 2.3 * 2.0 * Relative 1.7 * Entropy 1.4 ** * * (11.0 bits) 1.1 *** * * 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ATGTATGT consensus G G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:240726210-240726290 52 5.47e-06 atgtgtgtga gtgtgtgt atgtgtgtat chr9:82194526-82194606 43 5.47e-06 atttttatat gtgtgtgt atttgtgtgt chr13:63405745-63405825 6 5.47e-06 tgtgt gtgtgtgt gtgAGAGAGA chr22:39517827-39517907 25 5.47e-06 Ttgtgtgtgt gtgtgtgt gcgtgtgtgt chr13:62539498-62539578 44 5.47e-06 TTATAtgtgt gtgtgtgt gtgtgtgtgt chr22:30362735-30362815 19 5.47e-06 gtgtgtgtgt gtgtgtgt ctgtctctgt chr1:197277966-197278046 24 5.47e-06 atataaaaat GTGTGTGT ATATATAGGA chr4:108229008-108229088 29 2.03e-05 atacacacat atgtgtgt atatatacac chr2:182742748-182742828 23 2.03e-05 atatatgtgt atgtgtgt atatatgtat chr21:18873933-18874013 56 3.51e-05 CTCTGGGGGT GTGTATGT CACAAACACC chr13:89666459-89666539 68 3.51e-05 TGATTGTGTT GTGTATGT AGTCA chr13:63919858-63919938 71 4.06e-05 TATTAATTTA GTGTCTGT TT chr13:65035742-65035822 68 8.08e-05 ATTCAACTAA ATGTATGT AAATA chr22:28975261-28975341 36 8.08e-05 atatatgtgc atgtatgt atatagctat chr13:67552966-67553046 4 8.08e-05 tga atgtatgt atatatgtat chr1:92463336-92463416 57 8.08e-05 GAAATTGCAA ATGTATGT GAGCCATAAA chr1:230451770-230451850 32 8.08e-05 GTACACATAT ATGTATGT GTATACATAC chr1:233845386-233845466 39 8.08e-05 ttaaatatgt atgtatgt atatgtacat chr13:67320467-67320547 34 8.08e-05 AATATTTTTA ATGTATGT AAATATCTGA chr13:66706055-66706135 68 8.08e-05 acatatattt atgtatgt gcaga chr13:62373756-62373836 14 9.58e-05 TTCACTTACT ATGTCTGT ATATTGTTTA chr9:82270821-82270901 33 9.79e-05 GCAAGAGTAA GGGTGTGT TTTGAAATCA chr13:63768867-63768947 38 2.11e-04 CTTGTTTCCC ATGTGTAT TTTGTAGATC chr13:79387250-79387330 11 2.11e-04 CTACTCAAGA ATGTGTAT TTTAACACTT chr13:92897842-92897922 56 2.11e-04 atgatttcat atgtgttt ttatagctgt chr13:67478839-67478919 9 2.11e-04 AAAAGCAA ATGTGTTT TAGAATTTTA chr1:142602044-142602124 3 2.11e-04 aa atgtgtat aaaaagttgg chr13:62550231-62550311 54 2.11e-04 TTTGTCTTAA ATGTGTTT TCAATATGTA chr9:82193285-82193365 8 2.95e-04 AACCTTT GTGTATTT TTTGGTTAAC chr13:87807511-87807591 2 2.95e-04 T GTGTATTT TTATCTATAC chr13:74365369-74365449 3 2.95e-04 AA GTGTATAT TCATGTGCCT chr1:225734073-225734153 39 3.18e-04 GAGGTTGTTC CTGTGTGT AAATGGGGGA chr9:82320803-82320883 53 3.18e-04 GTTTCCAATG AGGTATGT TTGTGGCTAC chr13:62504262-62504342 19 3.18e-04 TTATCATACC AGGTATGT TTAGAAATAA chr13:85491362-85491442 20 3.47e-04 ataCTATGAA GTGTCTAT ATCTATAGCC chr13:64245762-64245842 33 3.47e-04 TTTAAAAATA GTGTCTAT TTATAGAGAG chr13:68334230-68334310 4 5.59e-04 ATC ATGTATTT TAAAATTTTC chr13:70256227-70256307 25 5.59e-04 AATCGTTTTT ATGTATTT ACTTCATCCC chr13:93312702-93312782 34 5.59e-04 acacacatac atgtatat atacatatat chr1:93546482-93546562 56 5.59e-04 AAATATAAAA ATGTATTT GAATTCACAT chr13:65599438-65599518 50 5.59e-04 gtttatgtgc atgtatat taagaattct chr13:64019841-64019921 67 5.59e-04 tttatataaa atgtattt aagata chr13:62361824-62361904 34 5.59e-04 CAAAATATAA ATGTATTT TGTATCTGCT chr13:81833726-81833806 15 6.45e-04 agatgcataa atgtctat agaaatttta chr13:63412857-63412937 22 6.45e-04 AATATTAAAC ATGTCTAT GCTTTAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:240726210-240726290 5.5e-06 51_[+2]_21 chr9:82194526-82194606 5.5e-06 42_[+2]_30 chr13:63405745-63405825 5.5e-06 5_[+2]_67 chr22:39517827-39517907 5.5e-06 24_[+2]_48 chr13:62539498-62539578 5.5e-06 43_[+2]_29 chr22:30362735-30362815 5.5e-06 18_[+2]_54 chr1:197277966-197278046 5.5e-06 23_[+2]_49 chr4:108229008-108229088 2e-05 28_[+2]_44 chr2:182742748-182742828 2e-05 22_[+2]_50 chr21:18873933-18874013 3.5e-05 55_[+2]_17 chr13:89666459-89666539 3.5e-05 67_[+2]_5 chr13:63919858-63919938 4.1e-05 70_[+2]_2 chr13:65035742-65035822 8.1e-05 67_[+2]_5 chr22:28975261-28975341 8.1e-05 35_[+2]_37 chr13:67552966-67553046 8.1e-05 3_[+2]_69 chr1:92463336-92463416 8.1e-05 56_[+2]_16 chr1:230451770-230451850 8.1e-05 31_[+2]_41 chr1:233845386-233845466 8.1e-05 38_[+2]_34 chr13:67320467-67320547 8.1e-05 33_[+2]_39 chr13:66706055-66706135 8.1e-05 67_[+2]_5 chr13:62373756-62373836 9.6e-05 13_[+2]_59 chr9:82270821-82270901 9.8e-05 32_[+2]_40 chr13:63768867-63768947 0.00021 37_[+2]_35 chr13:79387250-79387330 0.00021 10_[+2]_62 chr13:92897842-92897922 0.00021 55_[+2]_17 chr13:67478839-67478919 0.00021 8_[+2]_64 chr1:142602044-142602124 0.00021 2_[+2]_70 chr13:62550231-62550311 0.00021 53_[+2]_19 chr9:82193285-82193365 0.00029 7_[+2]_65 chr13:87807511-87807591 0.00029 1_[+2]_71 chr13:74365369-74365449 0.00029 2_[+2]_70 chr1:225734073-225734153 0.00032 38_[+2]_34 chr9:82320803-82320883 0.00032 52_[+2]_20 chr13:62504262-62504342 0.00032 18_[+2]_54 chr13:85491362-85491442 0.00035 19_[+2]_53 chr13:64245762-64245842 0.00035 32_[+2]_40 chr13:68334230-68334310 0.00056 3_[+2]_69 chr13:70256227-70256307 0.00056 24_[+2]_48 chr13:93312702-93312782 0.00056 33_[+2]_39 chr1:93546482-93546562 0.00056 55_[+2]_17 chr13:65599438-65599518 0.00056 49_[+2]_23 chr13:64019841-64019921 0.00056 66_[+2]_6 chr13:62361824-62361904 0.00056 33_[+2]_39 chr13:81833726-81833806 0.00064 14_[+2]_58 chr13:63412857-63412937 0.00064 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGTRTGT width=8 seqs=45 chr1:240726210-240726290 ( 52) GTGTGTGT 1 chr9:82194526-82194606 ( 43) GTGTGTGT 1 chr13:63405745-63405825 ( 6) GTGTGTGT 1 chr22:39517827-39517907 ( 25) GTGTGTGT 1 chr13:62539498-62539578 ( 44) GTGTGTGT 1 chr22:30362735-30362815 ( 19) GTGTGTGT 1 chr1:197277966-197278046 ( 24) GTGTGTGT 1 chr4:108229008-108229088 ( 29) ATGTGTGT 1 chr2:182742748-182742828 ( 23) ATGTGTGT 1 chr21:18873933-18874013 ( 56) GTGTATGT 1 chr13:89666459-89666539 ( 68) GTGTATGT 1 chr13:63919858-63919938 ( 71) GTGTCTGT 1 chr13:65035742-65035822 ( 68) ATGTATGT 1 chr22:28975261-28975341 ( 36) ATGTATGT 1 chr13:67552966-67553046 ( 4) ATGTATGT 1 chr1:92463336-92463416 ( 57) ATGTATGT 1 chr1:230451770-230451850 ( 32) ATGTATGT 1 chr1:233845386-233845466 ( 39) ATGTATGT 1 chr13:67320467-67320547 ( 34) ATGTATGT 1 chr13:66706055-66706135 ( 68) ATGTATGT 1 chr13:62373756-62373836 ( 14) ATGTCTGT 1 chr9:82270821-82270901 ( 33) GGGTGTGT 1 chr13:63768867-63768947 ( 38) ATGTGTAT 1 chr13:79387250-79387330 ( 11) ATGTGTAT 1 chr13:92897842-92897922 ( 56) ATGTGTTT 1 chr13:67478839-67478919 ( 9) ATGTGTTT 1 chr1:142602044-142602124 ( 3) ATGTGTAT 1 chr13:62550231-62550311 ( 54) ATGTGTTT 1 chr9:82193285-82193365 ( 8) GTGTATTT 1 chr13:87807511-87807591 ( 2) GTGTATTT 1 chr13:74365369-74365449 ( 3) GTGTATAT 1 chr1:225734073-225734153 ( 39) CTGTGTGT 1 chr9:82320803-82320883 ( 53) AGGTATGT 1 chr13:62504262-62504342 ( 19) AGGTATGT 1 chr13:85491362-85491442 ( 20) GTGTCTAT 1 chr13:64245762-64245842 ( 33) GTGTCTAT 1 chr13:68334230-68334310 ( 4) ATGTATTT 1 chr13:70256227-70256307 ( 25) ATGTATTT 1 chr13:93312702-93312782 ( 34) ATGTATAT 1 chr1:93546482-93546562 ( 56) ATGTATTT 1 chr13:65599438-65599518 ( 50) ATGTATAT 1 chr13:64019841-64019921 ( 67) ATGTATTT 1 chr13:62361824-62361904 ( 34) ATGTATTT 1 chr13:81833726-81833806 ( 15) ATGTCTAT 1 chr13:63412857-63412937 ( 22) ATGTCTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 1.5e+003 75 -264 137 -1214 -1214 -1214 -104 140 -1214 -1214 286 -1214 -1214 -1214 -1214 150 40 -6 146 -1214 -1214 -1214 -1214 150 -74 -1214 202 -67 -1214 -1214 -1214 150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.5e+003 0.622222 0.022222 0.355556 0.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.488889 0.133333 0.377778 0.000000 0.000000 0.000000 0.000000 1.000000 0.222222 0.000000 0.555556 0.222222 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTRTGT MEME-2 regular expression -------------------------------------------------------------------------------- [AG]TGT[AG]T[GAT]T -------------------------------------------------------------------------------- Time 9.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCCTGG MEME-3 width = 8 sites = 2 llr = 28 E-value = 8.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C :::aa::: probability G a:a:::aa matrix T :::::a:: bits 2.9 * *** ** 2.6 * *** ** 2.3 * *** ** 2.0 * *** ** Relative 1.7 * *** ** Entropy 1.4 ******** (20.1 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAGCCTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:82270821-82270901 69 8.91e-07 CATTCAGGGT GAGCCTGG AAAT chr17:61994305-61994385 28 8.91e-07 aaaattagct gagcctgg tcatgcatgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:82270821-82270901 8.9e-07 68_[+3]_4 chr17:61994305-61994385 8.9e-07 27_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCCTGG width=8 seqs=2 chr9:82270821-82270901 ( 69) GAGCCTGG 1 chr17:61994305-61994385 ( 28) GAGCCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 8.9e+003 -765 -765 286 -765 143 -765 -765 -765 -765 -765 286 -765 -765 284 -765 -765 -765 284 -765 -765 -765 -765 -765 150 -765 -765 286 -765 -765 -765 286 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.9e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCTGG MEME-3 regular expression -------------------------------------------------------------------------------- GAGCCTGG -------------------------------------------------------------------------------- Time 12.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGAGGS MEME-4 width = 8 sites = 3 llr = 39 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C a::::::7 probability G :3aa:aa3 matrix T :7:::::: bits 2.9 * ** ** 2.6 * ** ** 2.3 * ** ** 2.0 * ** *** Relative 1.7 * ** *** Entropy 1.4 * ****** (18.7 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CTGGAGGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:61994305-61994385 63 3.46e-07 cccaacaact cgggaggc tgaggcagga chr13:63882862-63882942 33 1.24e-06 gtttccgtaa ctggaggc aaccaatatg chr13:62390272-62390352 42 2.46e-06 ttaccagaag ctggaggg tagggagaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:61994305-61994385 3.5e-07 62_[+4]_10 chr13:63882862-63882942 1.2e-06 32_[+4]_40 chr13:62390272-62390352 2.5e-06 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGAGGS width=8 seqs=3 chr17:61994305-61994385 ( 63) CGGGAGGC 1 chr13:63882862-63882942 ( 33) CTGGAGGC 1 chr13:62390272-62390352 ( 42) CTGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 1.2e+004 -823 285 -823 -823 -823 -823 128 91 -823 -823 286 -823 -823 -823 286 -823 143 -823 -823 -823 -823 -823 286 -823 -823 -823 286 -823 -823 226 128 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAGGS MEME-4 regular expression -------------------------------------------------------------------------------- C[TG]GGAGG[CG] -------------------------------------------------------------------------------- Time 16.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTR MEME-5 width = 8 sites = 9 llr = 95 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::3 pos.-specific C :::::::: probability G 1a:a2a:7 matrix T 9:a:8:a: bits 2.9 * * * 2.6 * * * 2.3 * * * 2.0 * * * Relative 1.7 * * * Entropy 1.4 *** *** (15.3 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGTGTGTG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:240726210-240726290 19 5.47e-06 tgtatgtgta tgtgtgtg agtgtgtgag chr9:82194526-82194606 58 5.47e-06 tgtatttgtg tgtgtgtg tgtgtatata chr22:39517827-39517907 16 5.47e-06 AGAAAGAGAT tgtgtgtg tgtgtgtgtg chr13:62539498-62539578 57 5.47e-06 tgtgtgtgtg tgtgtgtg tgtgtgATGA chr22:30362735-30362815 34 5.47e-06 tgtctgtctc tgtgtgtg tgtgagagag chr13:62435878-62435958 26 1.05e-05 AACATTGCCA GGTGGGTG AAACTTTTTC chr4:108229008-108229088 68 2.54e-05 tacatacata tgtgtgta tatat chr2:182742748-182742828 64 2.54e-05 tgtatgtata tgtgtgta tatatgcat chr1:197277966-197278046 69 3.11e-05 tatgtatata tgtgggta tata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:240726210-240726290 5.5e-06 18_[+5]_54 chr9:82194526-82194606 5.5e-06 57_[+5]_15 chr22:39517827-39517907 5.5e-06 15_[+5]_57 chr13:62539498-62539578 5.5e-06 56_[+5]_16 chr22:30362735-30362815 5.5e-06 33_[+5]_39 chr13:62435878-62435958 1.1e-05 25_[+5]_47 chr4:108229008-108229088 2.5e-05 67_[+5]_5 chr2:182742748-182742828 2.5e-05 63_[+5]_9 chr1:197277966-197278046 3.1e-05 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTR width=8 seqs=9 chr1:240726210-240726290 ( 19) TGTGTGTG 1 chr9:82194526-82194606 ( 58) TGTGTGTG 1 chr22:39517827-39517907 ( 16) TGTGTGTG 1 chr13:62539498-62539578 ( 57) TGTGTGTG 1 chr22:30362735-30362815 ( 34) TGTGTGTG 1 chr13:62435878-62435958 ( 26) GGTGGGTG 1 chr4:108229008-108229088 ( 68) TGTGTGTA 1 chr2:182742748-182742828 ( 64) TGTGTGTA 1 chr1:197277966-197278046 ( 69) TGTGGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 5.4e+003 -982 -982 -31 133 -982 -982 286 -982 -982 -982 -982 150 -982 -982 286 -982 -982 -982 69 114 -982 -982 286 -982 -982 -982 -982 150 -15 -982 228 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.4e+003 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTR MEME-5 regular expression -------------------------------------------------------------------------------- TGTG[TG]GT[GA] -------------------------------------------------------------------------------- Time 20.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:61994305-61994385 2.33e-07 27_[+3(8.91e-07)]_6_[+3(9.71e-05)]_\ 13_[+4(3.46e-07)]_10 chr13:62537289-62537369 5.37e-01 80 chr13:62700692-62700772 2.31e-01 80 chr13:62472525-62472605 9.73e-01 80 chr7:151571167-151571247 4.43e-01 80 chr13:62624284-62624364 5.17e-01 80 chr13:62455621-62455701 9.85e-01 80 chr9:82062280-82062360 7.53e-01 80 chr21:16263976-16264056 6.18e-01 80 chr9:81976762-81976842 9.99e-01 80 chr13:62659020-62659100 6.21e-02 64_[+1(7.91e-06)]_8 chr13:62371689-62371769 7.55e-01 80 chr13:63386480-63386560 4.10e-01 80 chrX:466774-466854 8.22e-01 80 chr13:62435878-62435958 5.04e-05 25_[+5(1.05e-05)]_47 chr13:66117988-66118068 6.19e-01 80 chr13:67771995-67772075 1.00e+00 80 chr13:64203063-64203143 3.12e-01 80 chr1:236776472-236776552 9.70e-01 80 chr13:62504262-62504342 1.07e-01 80 chr9:82064126-82064206 1.00e+00 80 chr13:62738817-62738897 1.92e-01 80 chr13:62670944-62671024 4.20e-01 80 chr13:62694082-62694162 6.73e-01 80 chr2:182742748-182742828 3.24e-03 2_[+2(3.51e-05)]_12_[+2(2.03e-05)]_\ 22_[+2(8.08e-05)]_2_[+2(2.03e-05)]_10 chr13:64648621-64648701 8.16e-01 80 chr13:62721717-62721797 2.82e-01 80 chr13:66186766-66186846 7.93e-01 80 chr13:64004675-64004755 8.02e-01 80 chr13:62361824-62361904 8.91e-04 48_[+1(1.01e-05)]_24 chr13:66706055-66706135 3.81e-02 67_[+2(8.08e-05)]_5 chr13:62737728-62737808 7.74e-01 80 chr13:67133383-67133463 5.56e-01 80 chr7:136075289-136075369 8.23e-01 80 chr1:80038145-80038225 9.93e-01 80 chr13:62434427-62434507 3.00e-01 80 chr13:66216592-66216672 8.76e-01 80 chr13:67320467-67320547 3.57e-02 33_[+2(8.08e-05)]_39 chr13:62396643-62396723 6.31e-01 80 chr13:63039790-63039870 1.63e-01 80 chr9:82320803-82320883 1.02e-02 80 chr13:66883674-66883754 8.17e-01 80 chr13:65873995-65874075 9.97e-01 80 chr13:67748291-67748371 7.54e-01 80 chrX:143558142-143558222 8.29e-01 80 chr13:62604507-62604587 9.25e-01 80 chr13:78769956-78770036 8.53e-01 80 chr18:32811538-32811618 9.94e-01 80 chr1:233845386-233845466 7.13e-02 34_[+2(8.08e-05)]_38 chr13:62657564-62657644 9.79e-01 80 chr13:67151293-67151373 8.23e-01 80 chr13:64024045-64024125 2.41e-02 72_[+1(7.91e-06)] chr13:67567308-67567388 9.19e-01 80 chr13:66134817-66134897 9.06e-01 80 chr13:63108068-63108148 4.74e-01 80 chr1:244070347-244070427 4.63e-01 80 chr13:68357474-68357554 9.89e-01 80 chr13:64006217-64006297 8.91e-01 80 chr13:62696707-62696787 8.78e-01 80 chr13:63557685-63557765 5.91e-01 80 chr13:67679166-67679246 4.99e-02 80 chr17:69605624-69605704 9.99e-01 80 chr13:62593162-62593242 3.90e-01 80 chr21:9853810-9853890 7.88e-01 80 chr6:12784563-12784643 9.92e-01 80 chr13:64019841-64019921 9.86e-03 80 chr13:82596451-82596531 1.77e-01 80 chr13:63699361-63699441 9.55e-01 80 chr13:73270729-73270809 1.00e+00 80 chr13:89666459-89666539 3.84e-03 67_[+2(3.51e-05)]_5 chr13:64646063-64646143 4.27e-01 80 chr13:62669423-62669503 1.00e+00 80 chr13:62383857-62383937 5.74e-03 34_[+1(1.01e-05)]_38 chr13:68288302-68288382 4.63e-01 80 chr13:62425038-62425118 5.30e-01 80 chr1:226445410-226445490 9.75e-01 80 chr1:93088720-93088800 3.13e-01 80 chr4:114613724-114613804 1.00e+00 80 chr13:66219848-66219928 4.84e-01 80 chr13:62550231-62550311 2.90e-02 80 chr13:62592232-62592312 8.23e-01 80 chr13:62745135-62745215 1.66e-01 80 chr1:230451770-230451850 4.41e-02 31_[+2(8.08e-05)]_41 chr13:62373756-62373836 1.49e-02 13_[+2(9.58e-05)]_59 chr5:171116929-171117009 9.18e-01 80 chr13:62746020-62746100 2.62e-04 29_[+1(2.58e-06)]_43 chr13:66155529-66155609 9.92e-01 80 chr13:62390272-62390352 1.17e-04 41_[+4(2.46e-06)]_31 chr13:62531566-62531646 2.43e-01 80 chr13:67717183-67717263 9.93e-01 80 chr13:67683874-67683954 1.50e-01 80 chr13:62489841-62489921 8.63e-01 80 chr22:29065696-29065776 1.00e+00 80 chr1:227029723-227029803 1.00e+00 80 chr13:62557206-62557286 9.00e-01 80 chr1:142602044-142602124 8.45e-02 80 chr1:227487161-227487241 9.95e-01 80 chr13:62634850-62634930 2.35e-01 80 chr13:67278312-67278392 9.37e-01 80 chr13:64286150-64286230 9.66e-01 80 chr5:54456374-54456454 9.34e-01 80 chr13:68877875-68877955 9.68e-01 80 chr13:67478839-67478919 2.58e-01 80 chr13:64810980-64811060 5.58e-01 80 chr13:62457946-62458026 2.67e-01 80 chr10:127575065-12757514 2.07e-02 80 chr9:82067374-82067454 1.48e-01 80 chr9:82109255-82109335 9.67e-01 80 chr13:65599438-65599518 2.75e-02 80 chr13:62710779-62710859 3.32e-01 80 chr13:92897842-92897922 5.16e-02 80 chr1:92463336-92463416 1.14e-03 56_[+2(8.08e-05)]_16 chr13:64245762-64245842 3.88e-02 80 chr13:68047848-68047928 1.48e-01 80 chr1:227383370-227383450 2.01e-01 80 chr1:93546482-93546562 1.28e-01 80 chr4:108229008-108229088 4.28e-03 28_[+2(2.03e-05)]_30_[+2(2.03e-05)]_\ 6 chr13:64133563-64133643 9.87e-01 80 chr13:65951029-65951109 4.13e-01 80 chr13:67968812-67968892 5.39e-01 80 chr13:67264160-67264240 9.77e-01 80 chr13:79387250-79387330 6.27e-02 80 chr1:242420235-242420315 9.83e-01 80 chr1:197277966-197278046 2.33e-04 23_[+2(5.47e-06)]_37_[+5(3.11e-05)]_\ 4 chr13:67173344-67173424 5.22e-01 80 chr13:62708529-62708609 5.10e-02 80 chr13:67981977-67982057 9.52e-01 80 chr21:18873933-18874013 4.00e-05 55_[+2(3.51e-05)]_17 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[+5(4.70e-05)]_4_[+5(5.47e-06)]_1_[+2(5.47e-06)]_[+2(2.03e-05)]_13 chr13:68172272-68172352 9.66e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************