******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ASH1L.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:88355111-88355191 1.0000 80 chr1:206138158-206138238 1.0000 80 chr20:56004776-56004856 1.0000 80 chr17:76237690-76237770 1.0000 80 chr1:143913400-143913480 1.0000 80 chr15:67539066-67539146 1.0000 80 chr17:44302737-44302817 1.0000 80 chr15:69113274-69113354 1.0000 80 chr19:1790930-1791010 1.0000 80 chr21:45175153-45175233 1.0000 80 chr1:8958551-8958631 1.0000 80 chr19:36193361-36193441 1.0000 80 chr4:48782457-48782537 1.0000 80 chr19:47322174-47322254 1.0000 80 chr22:40440648-40440728 1.0000 80 chr1:25757195-25757275 1.0000 80 chr20:40247071-40247151 1.0000 80 chr19:2375515-2375595 1.0000 80 chr3:107241702-107241782 1.0000 80 chr11:67275735-67275815 1.0000 80 chr8:145159242-145159322 1.0000 80 chr10:74869180-74869260 1.0000 80 chr6:159527919-159527999 1.0000 80 chr1:120838376-120838456 1.0000 80 chr22:38054399-38054479 1.0000 80 chr7:8008269-8008349 1.0000 80 chr19:13906047-13906127 1.0000 80 chr2:106468118-106468198 1.0000 80 chr2:73460457-73460537 1.0000 80 chr16:22385987-22386067 1.0000 80 chr14:78083247-78083327 1.0000 80 chr3:126422988-126423068 1.0000 80 chr17:43697610-43697690 1.0000 80 chr2:74685413-74685493 1.0000 80 chr8:11660026-11660106 1.0000 80 chr15:83478229-83478309 1.0000 80 chr1:151254564-151254644 1.0000 80 chr1:120838606-120838686 1.0000 80 chr20:17662996-17663076 1.0000 80 chr6:160183397-160183477 1.0000 80 chr19:18315099-18315179 1.0000 80 chr14:73925379-73925459 1.0000 80 chr19:54641284-54641364 1.0000 80 chr17:4870663-4870743 1.0000 80 chr6:140469029-140469109 1.0000 80 chr17:1016166-1016246 1.0000 80 chr4:52709138-52709218 1.0000 80 chr12:53473210-53473290 1.0000 80 chr17:39943156-39943236 1.0000 80 chr3:149530910-149530990 1.0000 80 chr17:45177657-45177737 1.0000 80 chr14:23755428-23755508 1.0000 80 chr14:104181853-10418193 1.0000 80 chrX:46988598-46988678 1.0000 80 chr10:99393255-99393335 1.0000 80 chr19:2945008-2945088 1.0000 80 chr19:33184533-33184613 1.0000 80 chr14:21458014-21458094 1.0000 80 chr2:108363515-108363595 1.0000 80 chr19:19174643-19174723 1.0000 80 chr1:207996127-207996207 1.0000 80 chr19:16162461-16162541 1.0000 80 chr7:154720061-154720141 1.0000 80 chr5:32313306-32313386 1.0000 80 chr6:80247163-80247243 1.0000 80 chr19:36606263-36606343 1.0000 80 chr6:6657793-6657873 1.0000 80 chr19:30370076-30370156 1.0000 80 chr8:71314370-71314450 1.0000 80 chr19:50372892-50372972 1.0000 80 chr17:80325881-80325961 1.0000 80 chr1:38397543-38397623 1.0000 80 chr18:14132491-14132571 1.0000 80 chr11:124981541-12498162 1.0000 80 chr19:1041089-1041169 1.0000 80 chr3:114866187-114866267 1.0000 80 chr17:30058820-30058900 1.0000 80 chr21:39488062-39488142 1.0000 80 chrX:47415610-47415690 1.0000 80 chr17:74667893-74667973 1.0000 80 chr1:167691121-167691201 1.0000 80 chr8:25316003-25316083 1.0000 80 chr10:73896106-73896186 1.0000 80 chr9:35072925-35073005 1.0000 80 chr19:45394309-45394389 1.0000 80 chr22:35696150-35696230 1.0000 80 chr7:1211245-1211325 1.0000 80 chr19:14228650-14228730 1.0000 80 chr6:82957480-82957560 1.0000 80 chr9:37465717-37465797 1.0000 80 chr1:153895554-153895634 1.0000 80 chr7:158655932-158656012 1.0000 80 chr7:100825895-100825975 1.0000 80 chr2:73298514-73298594 1.0000 80 chrX:49125684-49125764 1.0000 80 chr16:57769274-57769354 1.0000 80 chr19:39817086-39817166 1.0000 80 chr15:75744217-75744297 1.0000 80 chr2:71454291-71454371 1.0000 80 chr16:67217563-67217643 1.0000 80 chr8:142583628-142583708 1.0000 80 chr11:107798895-10779897 1.0000 80 chr5:138882652-138882732 1.0000 80 chr12:113658963-11365904 1.0000 80 chr3:88108224-88108304 1.0000 80 chr4:1513552-1513632 1.0000 80 chr16:30382049-30382129 1.0000 80 chr12:49259699-49259779 1.0000 80 chr19:36248882-36248962 1.0000 80 chr2:65283361-65283441 1.0000 80 chr17:58755120-58755200 1.0000 80 chr17:8534240-8534320 1.0000 80 chr19:3344283-3344363 1.0000 80 chrX:47420506-47420586 1.0000 80 chr14:96001162-96001242 1.0000 80 chrX:48114682-48114762 1.0000 80 chr14:23790534-23790614 1.0000 80 chr6:112194704-112194784 1.0000 80 chr20:45985489-45985569 1.0000 80 chr11:62521656-62521736 1.0000 80 chr17:47866536-47866616 1.0000 80 chrX:49047652-49047732 1.0000 80 chr13:20532735-20532815 1.0000 80 chr19:42580161-42580241 1.0000 80 chr19:46087728-46087808 1.0000 80 chr7:23053771-23053851 1.0000 80 chr11:64140524-64140604 1.0000 80 chr3:152879079-152879159 1.0000 80 chr19:40728023-40728103 1.0000 80 chr19:45873896-45873976 1.0000 80 chr14:102991105-10299118 1.0000 80 chr14:54863563-54863643 1.0000 80 chr19:9945865-9945945 1.0000 80 chr1:153940209-153940289 1.0000 80 chr9:80911918-80911998 1.0000 80 chr19:2841352-2841432 1.0000 80 chr16:1728139-1728219 1.0000 80 chr11:63953467-63953547 1.0000 80 chr19:4153508-4153588 1.0000 80 chr6:32146053-32146133 1.0000 80 chr21:44772596-44772676 1.0000 80 chr17:72902618-72902698 1.0000 80 chr5:172484176-172484256 1.0000 80 chr2:64978216-64978296 1.0000 80 chr16:4852953-4853033 1.0000 80 chr1:24742157-24742237 1.0000 80 chr19:17443628-17443708 1.0000 80 chr11:4629535-4629615 1.0000 80 chr19:46148903-46148983 1.0000 80 chr9:139780764-139780844 1.0000 80 chr17:79196829-79196909 1.0000 80 chr17:55740484-55740564 1.0000 80 chr19:50269790-50269870 1.0000 80 chr19:37262385-37262465 1.0000 80 chr4:175204348-175204428 1.0000 80 chr12:125534218-12553429 1.0000 80 chr2:232646028-232646108 1.0000 80 chr19:41082684-41082764 1.0000 80 chrX:48958180-48958260 1.0000 80 chr17:38574255-38574335 1.0000 80 chr19:21203383-21203463 1.0000 80 chr15:98503716-98503796 1.0000 80 chr1:247171403-247171483 1.0000 80 chr7:130080869-130080949 1.0000 80 chr12:131836361-13183644 1.0000 80 chr16:50775833-50775913 1.0000 80 chr16:90143767-90143847 1.0000 80 chr14:23938598-23938678 1.0000 80 chr6:31820460-31820540 1.0000 80 chr3:113415633-113415713 1.0000 80 chr4:142253923-142254003 1.0000 80 chr19:36505164-36505244 1.0000 80 chr2:88927178-88927258 1.0000 80 chr1:23694886-23694966 1.0000 80 chr1:150601645-150601725 1.0000 80 chr19:17420228-17420308 1.0000 80 chr9:136154318-136154398 1.0000 80 chr17:79980928-79981008 1.0000 80 chr19:41283999-41284079 1.0000 80 chr19:46498560-46498640 1.0000 80 chr14:76127241-76127321 1.0000 80 chr17:17875921-17876001 1.0000 80 chr15:83738182-83738262 1.0000 80 chr10:131909417-13190949 1.0000 80 chr11:13690081-13690161 1.0000 80 chr19:4472049-4472129 1.0000 80 chr9:35815129-35815209 1.0000 80 chr21:47604561-47604641 1.0000 80 chr6:28833996-28834076 1.0000 80 chr22:42342785-42342865 1.0000 80 chr9:35072723-35072803 1.0000 80 chr20:3869890-3869970 1.0000 80 chr15:43213064-43213144 1.0000 80 chr16:69463286-69463366 1.0000 80 chr19:58790213-58790293 1.0000 80 chr14:64010138-64010218 1.0000 80 chr11:59383421-59383501 1.0000 80 chr10:42863473-42863553 1.0000 80 chr3:38125835-38125915 1.0000 80 chr17:56353-56433 1.0000 80 chr12:109535787-10953586 1.0000 80 chr19:39340976-39341056 1.0000 80 chr11:31531160-31531240 1.0000 80 chr14:21737679-21737759 1.0000 80 chr22:20004414-20004494 1.0000 80 chr19:39559095-39559175 1.0000 80 chr5:159546618-159546698 1.0000 80 chr2:136288841-136288921 1.0000 80 chr3:185826961-185827041 1.0000 80 chr17:27139534-27139614 1.0000 80 chr9:133588119-133588199 1.0000 80 chr17:61627656-61627736 1.0000 80 chr19:4968817-4968897 1.0000 80 chr10:120101818-12010189 1.0000 80 chr19:12814014-12814094 1.0000 80 chr1:6845233-6845313 1.0000 80 chr19:55678040-55678120 1.0000 80 chr10:4868241-4868321 1.0000 80 chr12:122028194-12202827 1.0000 80 chr20:32308163-32308243 1.0000 80 chr13:26795969-26796049 1.0000 80 chr19:7894847-7894927 1.0000 80 chr12:56211621-56211701 1.0000 80 chr20:47342213-47342293 1.0000 80 chr19:19496443-19496523 1.0000 80 chr19:42901164-42901244 1.0000 80 chr19:8444201-8444281 1.0000 80 chrX:154444575-154444655 1.0000 80 chr12:2999936-3000016 1.0000 80 chr19:50268876-50268956 1.0000 80 chr19:20844407-20844487 1.0000 80 chr19:6425013-6425093 1.0000 80 chr17:26368560-26368640 1.0000 80 chr14:69446099-69446179 1.0000 80 chr1:150669750-150669830 1.0000 80 chr22:37172294-37172374 1.0000 80 chr14:24584279-24584359 1.0000 80 chr10:101190514-10119059 1.0000 80 chr19:11456999-11457079 1.0000 80 chr15:93425662-93425742 1.0000 80 chr17:73452603-73452683 1.0000 80 chr1:113932886-113932966 1.0000 80 chr19:54663591-54663671 1.0000 80 chr16:50059012-50059092 1.0000 80 chr1:45140246-45140326 1.0000 80 chr6:36417109-36417189 1.0000 80 chr11:64902505-64902585 1.0000 80 chr9:34989514-34989594 1.0000 80 chr19:18303777-18303857 1.0000 80 chr13:20437832-20437912 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ASH1L/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ASH1L.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.216 C 0.286 G 0.282 T 0.217 Background letter frequencies (from file dataset with add-one prior applied): A 0.216 C 0.286 G 0.282 T 0.217 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCAATYRG MEME-1 width = 8 sites = 250 llr = 1436 E-value = 1.9e-128 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:59:141 pos.-specific C 971::3:1 probability G ::3::268 matrix T 131:a5:: bits 2.2 2.0 * 1.8 ** 1.5 ** Relative 1.3 ** Entropy 1.1 * ** (8.3 bits) 0.9 ** ** ** 0.7 ** ** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel CCAATTGG consensus TG CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:46498560-46498640 15 1.43e-05 TCTTAGTTAG CCAATTGG AAGTTTTGGA chr11:4629535-4629615 46 1.43e-05 GTACCCCTAG CCAATTGG TGATGAGACG chr1:120838606-120838686 5 1.43e-05 ATGG CCAATTGG GCCGGGGTAG chr6:159527919-159527999 43 1.43e-05 tagcgggtaa ccaattgg aggcctctaa chr20:47342213-47342293 8 2.52e-05 gtctgag ccaattag aattcccttg chr19:37262385-37262465 8 2.52e-05 cccggga ccaattag gggctgaagt chr9:80911918-80911998 40 2.52e-05 TTCGCGCGAA CCAATTAG CGCAGGGCCT chr19:47322174-47322254 22 2.52e-05 tgggagagga ccaattag aatgatgcat chr1:8958551-8958631 67 2.52e-05 taaaaacgca ccaattag cactct chr14:21737679-21737759 1 4.44e-05 . CTAATTAG ACAGTTCAAC chr17:73452603-73452683 49 6.32e-05 CAAATCCTGA CCAATCGG TGGCCTGAAC chr12:2999936-3000016 50 6.32e-05 AGAACACGGA CCAATCGG CGGCGGCGAC chr10:4868241-4868321 43 6.32e-05 GCGCCTCCAG CCAATCGG GGTGCCCGTC chr19:36505164-36505244 47 6.32e-05 CGCCTTCCAC CCAATCGG CGCTCTCACT chr16:90143767-90143847 43 6.32e-05 GGCGAGCCCG CCAATCGG CAGTCAGGAG chr19:45873896-45873976 49 6.32e-05 TAGGGCAGAG CCAATCGG GATACTGCGC chr19:50372892-50372972 70 6.32e-05 GACGACAGAC CCAATCGG GAA chr12:53473210-53473290 57 6.32e-05 CCTGCAGGAG CCAATCGG AAGGCGCAGG chr19:18303777-18303857 34 8.19e-05 ATTCTTTTTT CCGATTGG TCCGTGAAGC chr22:20004414-20004494 31 8.19e-05 GCAACCGGCG CCGATTGG GCGGATGCGC chr11:31531160-31531240 23 8.19e-05 AATACGCCTT CCGATTGG TTGGCTCGGG chr16:69463286-69463366 2 8.19e-05 g ccgattgg tccattttta chr7:130080869-130080949 45 8.19e-05 ACCCTCTTCT CCGATTGG CCCGTCTTCC chr15:98503716-98503796 27 8.19e-05 CCGGAGCCTC CCGATTGG CCAACACTCC chr20:45985489-45985569 42 8.19e-05 AAGCTCATCC CCGATTGG CTGCCCCGGC chr3:126422988-126423068 19 8.19e-05 TCAGCGCCAC CCGATTGG TGAAGCCTCT chr11:67275735-67275815 47 8.19e-05 GCAACCGCCG CCGATTGG CCTCCGCCTT chr19:55678040-55678120 46 1.00e-04 AAACTTTTGG CCAATGGG AGCACTGAGG chr10:120101818-12010189 42 1.00e-04 TGCGTCTCAA CCAATGGG CTGGGGCCGT chr9:133588119-133588199 30 1.00e-04 CTCCCACCGG CCAATGGG ACGGAGGAAA chr12:109535787-10953586 14 1.00e-04 AAAGGGCCAG CCAATGGG AACGCGTCTC chr19:17420228-17420308 11 1.00e-04 GGCGTGGCAA CCAATGGG CGCATGAGTT chr5:172484176-172484256 42 1.00e-04 GACTTCTGCA CCAATGGG CGTGGGGGAG chr19:9945865-9945945 33 1.00e-04 GTTAGGGAGC CCAATGGG CGTCGCCGCC chr13:20532735-20532815 25 1.00e-04 GCCGTCGGAG CCAATGGG CGTGCCCGAA chr16:67217563-67217643 16 1.00e-04 AGGTGAAGAG CCAATGGG GAACCAGAAA chr2:73298514-73298594 54 1.00e-04 GCCCCGTTGA CCAATGGG AAAAGGGTGA chr17:74667893-74667973 2 1.00e-04 C CCAATGGG GATCAAGGCC chr9:34989514-34989594 4 1.15e-04 GCG CCAATCAG ATCCACACCA chr19:8444201-8444281 4 1.15e-04 gca ccaatcag cgctctgtgt chr19:12814014-12814094 37 1.15e-04 ACAAAACGGT CCAATCAG AACAGCCCTC chr11:59383421-59383501 22 1.15e-04 CAGATAAAGG CCAATCAG ACTTTTGGGG chr9:35072723-35072803 19 1.15e-04 CAGATCACAG CCAATCAG GAAATTCGCT chr22:42342785-42342865 10 1.15e-04 GGGAACTCG CCAATCAG AAGCTGGGAA chr1:150601645-150601725 33 1.15e-04 GGCCTATTGG CCAATCAG GAAGAGTACA chr1:23694886-23694966 5 1.15e-04 TCAG CCAATCAG CGAGCGAAGT chr6:31820460-31820540 11 1.15e-04 tgtaaacgca ccaatcag caccctgtca chr19:21203383-21203463 23 1.15e-04 AGGGAACCGT CCAATCAG GCACGCAGGT chr17:38574255-38574335 49 1.15e-04 TTTGAATAAA CCAATCAG GTTAGGGAGG chrX:48958180-48958260 33 1.15e-04 CAACCATCGA CCAATCAG ATCATCACCG chr19:4153508-4153588 55 1.15e-04 ACCCTGTCCA CCAATCAG CACCTGGAGG chr19:2841352-2841432 60 1.15e-04 GCAGCACTGT CCAATCAG AAGCGCGGCT chr19:40728023-40728103 8 1.15e-04 AGCACAT CCAATCAG AGGGATGCGA chr19:3344283-3344363 10 1.15e-04 AAGCAGGGC CCAATCAG AGACAGCTGC chr12:113658963-11365904 4 1.15e-04 TGA CCAATCAG AAGCACCGCC chr5:138882652-138882732 23 1.15e-04 taaaaatgca ccaatcag cgctctgtct chr8:142583628-142583708 19 1.15e-04 cctcccacaa ccaatcag actgattgca chr7:1211245-1211325 42 1.15e-04 gtaaaatgca ccaatcag tgctctgtaa chr10:73896106-73896186 3 1.15e-04 ca ccaatcag cgctctgtgt chr8:25316003-25316083 56 1.15e-04 CAGAGTCCAG CCAATCAG CACCCAGTAT chr17:30058820-30058900 50 1.15e-04 taaaaacaca ccaatcag cactctgtat chr19:1041089-1041169 26 1.15e-04 GTCCTGGCAG CCAATCAG ATGCGAGGAC chr6:6657793-6657873 72 1.15e-04 attgcaagat ccaatcag a chr1:207996127-207996207 30 1.15e-04 GGCCCACCCA CCAATCAG AGGAAGTGTC chr19:19174643-19174723 22 1.15e-04 CCCACCTCTG CCAATCAG CGATTGGCTT chr17:1016166-1016246 7 1.15e-04 CCTGAC CCAATCAG CAAGCATTTG chr17:4870663-4870743 58 1.15e-04 AGGCACCCTA CCAATCAG ACCAGGTCAG chr19:18315099-18315179 37 1.15e-04 GGCGAAGTAG CCAATCAG AGATTGTCTA chr10:74869180-74869260 43 1.15e-04 taaaaatgca ccaatcag tgctctgtgt chr19:36193361-36193441 1 1.15e-04 . CCAATCAG AAGCGACAGC chr15:67539066-67539146 34 1.15e-04 tgtaaatgca ccaatcag cactctgcaa chr11:64902505-64902585 36 1.72e-04 GTGGCTGCCA CTGATTGG TTGCGATAAG chr6:36417109-36417189 14 1.72e-04 ttacagagtg ctgattgg tgcatttaca chr16:50059012-50059092 61 1.72e-04 GTAGAGGAAT CCAATGAG CGTAGCGGGT chr14:24584279-24584359 38 1.72e-04 AGGGGGCGCT CTGATTGG TCGATAAGGT chr19:20844407-20844487 20 1.72e-04 AGCTGCGTTC CTGATTGG ATGGTTTCCA chr19:4968817-4968897 39 1.72e-04 TGCGCCCCCT CCAATGAG AACAGAGCCG chr19:39559095-39559175 6 1.72e-04 gagtg ctgattgg tccattttat chr15:43213064-43213144 17 1.72e-04 GCTACAGGTG CTGATTGG AGAGTGCGTT chr15:83738182-83738262 7 1.72e-04 ggaatg ctgattgg tccattttac chr14:76127241-76127321 35 1.72e-04 AGTACTCTCT CTGATTGG CTGTCCCGGT chr17:79980928-79981008 57 1.72e-04 CGACCCTCAG CCAATGAG CCCGGAGCAT chr2:88927178-88927258 29 1.72e-04 GTCTTTTTAC CTGATTGG TGCGCTCATC chr1:247171403-247171483 3 1.72e-04 GC CTGATTGG ACAGTTCTCA chr19:41082684-41082764 44 1.72e-04 AGTCTCTGGC CCAATGAG CAGCCTATGG chr19:46148903-46148983 20 1.72e-04 CCGTTCAGAA CCAATGAG AGCCTGTCGC chr17:72902618-72902698 64 1.72e-04 acacagggtg ctgattgg tgtatttac chr21:44772596-44772676 16 1.72e-04 GAGAAAGTAT CTGATTGG CTGCTAGCAG chr11:63953467-63953547 51 1.72e-04 TCCCCGCTGT CCAATGAG AAGGAAGTGG chr14:102991105-10299118 4 1.72e-04 ccg ctgattgg accaggcatg chr3:152879079-152879159 72 1.72e-04 CGCCCCGAGA CCAATGAG T chr11:64140524-64140604 42 1.72e-04 aggcagtgtg ctgattgg cttaggtctg chr17:47866536-47866616 59 1.72e-04 CCCTCCTCTC CTGATTGG TCGAGGTTGG chrX:48114682-48114762 55 1.72e-04 ACTAACTGCC CTGATTGG TCCATCATCC chr19:39817086-39817166 36 1.72e-04 TCTGGCCTCT CTGATTGG TCCTTCCACA chr16:57769274-57769354 30 1.72e-04 AATGCGGACG CTGATTGG TCAATCCAGG chr7:158655932-158656012 34 1.72e-04 acgcagagcg ctgattgg tccgttttta chr1:167691121-167691201 53 1.72e-04 TGCGGGCAGG CCAATGAG CGGACAGCGA chr3:114866187-114866267 33 1.72e-04 CTTCAGTGAG CCAATGAG AATGGGACGC chr18:14132491-14132571 21 1.72e-04 CCCCAGAGCC CTGATTGG ATAGTAGTGC chr19:30370076-30370156 7 1.72e-04 ggccaa ccaatgag ggcacagaag chr7:154720061-154720141 4 1.72e-04 tgt ccaatgag agaaaagGTT chr19:16162461-16162541 21 1.72e-04 acttcagcct ctgattgg tcctgggctg chr19:33184533-33184613 73 1.72e-04 ttacatagta ctgattgg chr19:2945008-2945088 7 1.72e-04 GAGACT CTGATTGG ACAGTGCTGT chr3:149530910-149530990 59 1.72e-04 TGGGTGCGGA CCAATGAG GCGCGTGGGG chr1:151254564-151254644 20 1.72e-04 GGCCCCTTGC CCAATGAG CATAAGAGGA chr8:11660026-11660106 10 1.72e-04 TCTCGGCCT CCAATGAG CTTCTAGAGT chr17:43697610-43697690 62 1.72e-04 CCCTGAAGGG CCAATGAG CGCCAGAGGA chr14:78083247-78083327 46 1.72e-04 GGCCTGGCAC CTGATTGG AGGCCGCATC chr2:73460457-73460537 72 1.72e-04 GAGCCGGGGG CTGATTGG C chr19:1790930-1791010 66 1.72e-04 cccaggctca ccaatgag agccagc chr17:76237690-76237770 15 1.72e-04 CCCTCACCCT CTGATTGG CTAGTTGACT chr16:88355111-88355191 7 1.72e-04 CCTCAC CTGATTGG ATGCAGCCCT chr11:124981541-12498162 31 1.97e-04 TTAAGATTCA CTAATCAG CGTTGCTCTT chr13:20437832-20437912 55 2.41e-04 CTTGGGCACG CCCATTGG CTCCGACGGC chr3:185826961-185827041 17 2.41e-04 CAGCCTTGTT CCCATTGG CCAGAGGCCG chr19:58790213-58790293 5 2.41e-04 GGCT CCCATTGG CCATCGGCCA chr9:136154318-136154398 12 2.41e-04 gtgtccttcc cctattgg ctggggtaac chr16:4852953-4853033 70 2.41e-04 GCTCCTCCTC CCTATTGG CCC chr15:75744217-75744297 34 2.41e-04 CTCAACCCCG CCTATTGG AGACGGACTG chr17:80325881-80325961 50 2.41e-04 ctgcatgtcg cctattgg ttgttgggca chr6:80247163-80247243 31 2.41e-04 TACCCGAGCT CCCATTGG CTTCTGTCTC chr10:99393255-99393335 20 2.41e-04 ATTCCCGCTG CCCATTGG CTGTTACCTA chr6:140469029-140469109 1 2.41e-04 . ctgattag tgcatttaca chr6:160183397-160183477 45 2.41e-04 GCCTGCCTCT CCCATTGG TTGGCGTAGG chr20:40247071-40247151 51 2.41e-04 AAAACACAGA CCCATTGG TCATCCCGGC chr17:44302737-44302817 29 2.41e-04 TCCTCTGGCG CCCATTGG CCCTTCAGGG chr1:120838376-120838456 40 3.02e-04 GGGCCCATAG CCAATAGG AAGAGCTGAT chr14:69446099-69446179 43 4.06e-04 CCCATCGCCT CTCATTGG GAATTCCTGG chr5:159546618-159546698 23 4.06e-04 GTAGGAACTT CTCATTGG CCAGATGTGT chr10:42863473-42863553 42 4.06e-04 CCCCGTGCCC CTTATTGG ATAAAGCTTC chr14:64010138-64010218 10 4.06e-04 AAGCGAGGC CTCATTGG CCAGTATCCG chr20:3869890-3869970 1 4.06e-04 . CTCATTGG ACGGAGGCAC chr9:35815129-35815209 39 4.06e-04 CTCTTTTCAT CTCATTGG CTGCTTCTAC chr19:4472049-4472129 38 4.06e-04 AACCTCTGTT CTTATTGG TCGCCTCCCT chr14:23938598-23938678 40 4.06e-04 TTGACTGTCT CTTATTGG CTTGCCGTCA chr17:79196829-79196909 45 4.06e-04 GTCCCGGGAG CTCATTGG GCCGCTCGGC chr17:8534240-8534320 10 4.06e-04 GGAATGACG CTCATTGG CTCCCGCTCC chr14:21458014-21458094 9 4.06e-04 AACCATTG CTTATTGG CTGCTGGCAA chr17:45177657-45177737 27 4.06e-04 TCCTCTGGCG CTCATTGG CCCTTCAGGG chr22:38054399-38054479 39 4.06e-04 TTTGTAGATT CTTATTGG TTAAGAAGAG chr1:143913400-143913480 23 4.06e-04 CTTCCCGCTT CTTATTGG AAGAGGGTCT chrX:47420506-47420586 14 4.55e-04 TGACCCTGAC CCAATAAG GGTGGAAGGC chr1:206138158-206138238 12 4.55e-04 AGAACCTCTT CCAATAAG AAGCGGGAAG chr10:131909417-13190949 70 5.12e-04 GCGCAGCGGG TCAATTAG CTT chr1:38397543-38397623 47 5.12e-04 CCTGCCTCCG CCAATTGT CGCGTACCCT chr19:2375515-2375595 21 5.72e-04 GGACCAATCA CTGATGGG GATGGAGGGG chr8:71314370-71314450 72 8.59e-04 GGCTCACTGC CCCATCAG T chr12:122028194-12202827 17 9.41e-04 AGTACTTTAA CCAATGGA AATAAAAATC chr2:232646028-232646108 5 9.41e-04 GGAA CCAATGGA AAGCCAGCCT chr19:50269790-50269870 9 9.41e-04 ACAGCCGC CCAATGGA GGGCTGAAGT chr19:42580161-42580241 46 9.41e-04 GACATGAACG TCGATTGG CCGAACGGCA chr14:23790534-23790614 35 9.41e-04 GTAATATTCC CCAATGGA GTACTAGCTC chr12:49259699-49259779 61 9.41e-04 CCTCCAGCAG CCAATGGA TCTGAGGATC chr2:108363515-108363595 55 9.41e-04 atacagagtg tcgattgg tgcattcaca chr2:106468118-106468198 7 9.41e-04 ATTACG CCAATGGA GCTGTCATTG chr11:13690081-13690161 30 1.02e-03 TGCGCGAGAG CCAATCAA AAGCGGATGT chr19:36248882-36248962 6 1.02e-03 GTTCT CCAATCAA ACACGCCCTG chr9:37465717-37465797 55 1.02e-03 TTCGCTGCAA CCAATCAA AACCCTCTGT chr20:32308163-32308243 16 1.18e-03 GCGTACTTGT CTCATGGG ACAATAGCAC chr16:50775833-50775913 73 1.18e-03 AGCTCGGCCT ACGATTGG chr5:32313306-32313386 72 1.18e-03 GGACTTTCCA ACGATTGG A chr4:52709138-52709218 13 1.18e-03 GGCCCCAGGA CCAATCGT ATTGGCCAGT chr1:150669750-150669830 70 1.33e-03 GCTGGTCAAT CCAATGAA GGA chr19:6425013-6425093 73 1.33e-03 GGCAGGAGGC CCAATGAA chr19:7894847-7894927 10 1.33e-03 GCTATTGGT CTTATCAG GTGTTGATCA chr4:142253923-142254003 63 1.33e-03 acacagggtg ctgattga tgtgtttaca chr16:30382049-30382129 39 1.33e-03 AACCTCCTGG CCAATGAA TATGACTGAA chr16:22385987-22386067 44 1.33e-03 GGGACTTCGT CCAATCGC CTCTCTCCAA chr15:69113274-69113354 20 1.33e-03 GCGGCCCGAG CCAATCGC CGCCGAGGGT chr2:64978216-64978296 5 1.43e-03 CTAC CCAATGGT GAGGCCCATC chr9:35072925-35073005 4 1.43e-03 CTC CCACTTGG CTCCAGTTCA chr17:27139534-27139614 7 1.55e-03 GCACAG CCAATGGC GAGCCAGGGA chr12:131836361-13183644 16 1.55e-03 ccaaatcaag ccaatcat agtcccaaac chr4:1513552-1513632 18 1.55e-03 cccaggccat ccaatcat agtgctccat chr3:107241702-107241782 59 1.55e-03 ACTGCGCGGG CCAATGGC AGGCTGCCTT chr1:45140246-45140326 69 1.72e-03 CAGCCATTGG CTAATTCG CTTG chr19:11456999-11457079 39 1.72e-03 TGGGTATTGA CTAATCGT AGAAACCCCC chr13:26795969-26796049 34 1.72e-03 TGCATCCCAA CCAATCAC CAGCCAGCGG chr17:56353-56433 72 1.72e-03 ATGGGGAAAC ATGATTGG G chr16:1728139-1728219 70 1.72e-03 CTGCGGAGGG ATGATTGG CGT chr3:88108224-88108304 46 1.72e-03 GGGCATGAAC ATGATTGG CAGCTTGCGT chr1:153895554-153895634 63 1.72e-03 CGGAGAAGTG ATGATTGG CGTGCTTAAA chr6:82957480-82957560 59 1.72e-03 ATGTCTCTTG ATGATTGG CTGGTGCCTG chr7:8008269-8008349 40 1.72e-03 TATTCCAGAA CCAATCAC TCGAGTTCTA chr1:25757195-25757275 10 1.72e-03 GACACTATA ATGATTGG CGCATTCTTC chr21:45175153-45175233 20 1.72e-03 TCACTGAGTG ATGATTGG CTGACTCTGA chr6:28833996-28834076 37 1.87e-03 atacagagtg tccattgg tgcattcaca chrX:49125684-49125764 1 1.87e-03 . TCCATTGG CTCGGCTCCC chr14:23755428-23755508 71 1.87e-03 GCTGGGGTCA TCTATTGG AT chr17:39943156-39943236 66 1.87e-03 TAACATTGCA TCTATTGG CAGATAG chr15:93425662-93425742 72 1.99e-03 TTGAAATTAA CCAATAGA A chr17:61627656-61627736 59 1.99e-03 GCCGCAATAA CCAATGAC AAGAAAGAAT chr4:175204348-175204428 35 1.99e-03 ATTCCTCACT TTAATGAG CCACCACTAC chr19:54641284-54641364 65 1.99e-03 CTGCCAGGAA CCAATAGA AAGCCTCC chr12:125534218-12553429 45 2.15e-03 GGAACGCGTC GCGATTGG TTGGCGCTCA chr19:17443628-17443708 40 2.15e-03 CCCTCCTGCT CCTATAAG CTGTCTTTGA chr6:112194704-112194784 55 2.15e-03 GCGAGCCGCA ACCATTGG CGCCTGGGGC chr19:36606263-36606343 45 2.15e-03 AGGGACGGCG GCGATTGG CGGACGCTCC chr4:48782457-48782537 16 2.15e-03 GGTCTTCCCT CTAATCAT TCTCTGCCCT chr19:41283999-41284079 38 2.40e-03 TCTCACGCCA CCAATCCG CGCCTCTTGT chr2:136288841-136288921 2 2.64e-03 A CGGATTGG TTCTTTTTCT chr11:62521656-62521736 30 2.64e-03 TCCCCTGTCA CGGATTGG TCCGCTCTCC chr2:71454291-71454371 53 2.64e-03 ATATGTGGTT TTTATTGG TCTAAATGTG chr15:83478229-83478309 14 2.64e-03 TTCTCACCTT TTCATTGG TTGTCGCTGG chr21:47604561-47604641 28 2.89e-03 CACCACCAAC CCAGTGGG CCGGCCACAC chr14:54863563-54863643 18 2.89e-03 GAACCAGTCA GCGATTAG AGGCCGAGTC chr14:96001162-96001242 21 2.89e-03 TTGCCGACGA CCAATAGT AAGGCAGTAG chr6:32146053-32146133 3 3.16e-03 AG CCAATAGC CATTGTGCGA chr19:46087728-46087808 58 3.16e-03 GGTTCGGGCT GTGATTGG TCGTAGACAG chr20:17662996-17663076 18 3.16e-03 CGGTCGCTGG CCAGTCAG GACGCGGGTG chr20:56004776-56004856 4 3.16e-03 TGA CCAATAGC TGTGTACTGG chr19:39340976-39341056 1 3.46e-03 . CTAATCCG TCAGCACCAG chrX:49047652-49047732 52 3.46e-03 CTTTTCTCCA TTCATTAG CTAGTTTTTC chr19:42901164-42901244 19 3.71e-03 CCTCCCTGGG CCACTCAG GACCCTTTGC chr9:139780764-139780844 26 3.71e-03 TGCGGGCTCG CTGGTTGG CTCCGGCGTC chr7:100825895-100825975 32 3.71e-03 TAAGTCCAAG CCACTCAG AAGCAAGTTG chr19:13906047-13906127 29 3.71e-03 GCTGTGCGCT CTGGTTGG GTAAACAAGA chr22:40440648-40440728 66 3.71e-03 CAAAAGCCAG CCAGTGAG AGCCGGA chr1:153940209-153940289 37 4.01e-03 AGGGTAGTGT GCCATTGG CTCGATGTCC chr19:19496443-19496523 63 4.31e-03 GGCCACACCT TCCATGGG GTGCGGGTCC chrX:47415610-47415690 35 4.31e-03 TGAAGTAGAG CCTATCAA TGCCCAGGGT chr2:65283361-65283441 46 4.67e-03 GGAGCGTCCA CGTATTGG TGGAGCCGCG chr10:101190514-10119059 15 5.04e-03 GAGAAGGAAC GCTATTAG CCAATCCAAG chr17:26368560-26368640 27 5.04e-03 CTGCCCATCC CGGATCGG GGGCGGGATT chr7:23053771-23053851 41 5.04e-03 GCCAGTTCAG CCTATCGC CGTCCTCCGG chr22:35696150-35696230 40 5.43e-03 TATATGACAG CCAGTAGG TAAGGAGAGA chr1:113932886-113932966 43 6.33e-03 GGTCCCCATT CTCGTTGG CGGTCCGCCT chr22:37172294-37172374 41 6.33e-03 ACGAGTGGTT GTAATTGA CGTCAACCAG chr1:6845233-6845313 24 6.33e-03 CGGGTTCTGG CCACTAGG AAGCTTTGTT chr17:17875921-17876001 16 6.80e-03 TGGCCCGCCC CCAAAGGG GAAGCTGCGC chr21:39488062-39488142 14 6.80e-03 tactgcttct ataattac tactcctact chr17:55740484-55740564 14 7.79e-03 GATTGGCTGC CCAGTTGC TGGGGCTTTG chr17:58755120-58755200 56 8.34e-03 GGGGGTGGTT CCGCTGAG GCGTGGTAGG chr1:24742157-24742237 31 8.75e-03 GTCCTCGCAG CCACTTGC CTGCGCGAAA chr19:14228650-14228730 19 8.75e-03 TTCCCGCGCC ACTATAGG CTCTCAGCCT chrX:46988598-46988678 8 8.75e-03 TTATTGG ATGATAAG AGGGTCAGTC chr14:104181853-10418193 39 9.39e-03 GACTAACTAA CCAATCCA AAGTCTCAAT chr3:113415633-113415713 54 9.99e-03 GGAGAGGAAA CCAAGGAG TGAACGGGGA chr8:145159242-145159322 58 9.99e-03 GAAGGCAGAA CTGAGTGG CGGGTACGGC chr2:74685413-74685493 60 1.06e-02 GGCGCTGCTG TGGATTGG TCACAGGGAG chrX:154444575-154444655 50 1.20e-02 AGAACGGGGA CTTGTGGG GGACGCTCCC chr12:56211621-56211701 2 1.20e-02 G TCAATAGC TGACGTCGCT chr19:45394309-45394389 44 1.69e-02 CGAGTGAGAA CCAATACA AAAGGACATT chr19:54663591-54663671 56 2.13e-02 CTAGCAACCG CCTCTTGT CACAGATCTG chr11:107798895-10779897 41 2.25e-02 TTGCTTCATT TTCCTTGG TTGTTGCTGC chr19:50268876-50268956 56 2.50e-02 AATGGCCATT CCAAAGGT CCAGAACACA chr3:38125835-38125915 28 2.50e-02 agtagtagta gtgatggt ggtagtagtg chr14:73925379-73925459 71 2.77e-02 AGCCCAAGCT TTAGTTGT AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:46498560-46498640 1.4e-05 14_[+1]_58 chr11:4629535-4629615 1.4e-05 45_[+1]_27 chr1:120838606-120838686 1.4e-05 4_[+1]_68 chr6:159527919-159527999 1.4e-05 42_[+1]_30 chr20:47342213-47342293 2.5e-05 7_[+1]_65 chr19:37262385-37262465 2.5e-05 7_[+1]_65 chr9:80911918-80911998 2.5e-05 39_[+1]_33 chr19:47322174-47322254 2.5e-05 21_[+1]_51 chr1:8958551-8958631 2.5e-05 66_[+1]_6 chr14:21737679-21737759 4.4e-05 [+1]_72 chr17:73452603-73452683 6.3e-05 48_[+1]_24 chr12:2999936-3000016 6.3e-05 49_[+1]_23 chr10:4868241-4868321 6.3e-05 42_[+1]_30 chr19:36505164-36505244 6.3e-05 46_[+1]_26 chr16:90143767-90143847 6.3e-05 42_[+1]_30 chr19:45873896-45873976 6.3e-05 48_[+1]_24 chr19:50372892-50372972 6.3e-05 69_[+1]_3 chr12:53473210-53473290 6.3e-05 56_[+1]_16 chr19:18303777-18303857 8.2e-05 33_[+1]_39 chr22:20004414-20004494 8.2e-05 30_[+1]_42 chr11:31531160-31531240 8.2e-05 22_[+1]_50 chr16:69463286-69463366 8.2e-05 1_[+1]_71 chr7:130080869-130080949 8.2e-05 44_[+1]_28 chr15:98503716-98503796 8.2e-05 26_[+1]_46 chr20:45985489-45985569 8.2e-05 41_[+1]_31 chr3:126422988-126423068 8.2e-05 18_[+1]_54 chr11:67275735-67275815 8.2e-05 46_[+1]_26 chr19:55678040-55678120 0.0001 45_[+1]_27 chr10:120101818-12010189 0.0001 41_[+1]_31 chr9:133588119-133588199 0.0001 29_[+1]_43 chr12:109535787-10953586 0.0001 13_[+1]_59 chr19:17420228-17420308 0.0001 10_[+1]_62 chr5:172484176-172484256 0.0001 41_[+1]_31 chr19:9945865-9945945 0.0001 32_[+1]_40 chr13:20532735-20532815 0.0001 24_[+1]_48 chr16:67217563-67217643 0.0001 15_[+1]_57 chr2:73298514-73298594 0.0001 53_[+1]_19 chr17:74667893-74667973 0.0001 1_[+1]_71 chr9:34989514-34989594 0.00011 3_[+1]_69 chr19:8444201-8444281 0.00011 3_[+1]_69 chr19:12814014-12814094 0.00011 36_[+1]_36 chr11:59383421-59383501 0.00011 21_[+1]_51 chr9:35072723-35072803 0.00011 18_[+1]_54 chr22:42342785-42342865 0.00011 9_[+1]_63 chr1:150601645-150601725 0.00011 32_[+1]_40 chr1:23694886-23694966 0.00011 4_[+1]_68 chr6:31820460-31820540 0.00011 10_[+1]_62 chr19:21203383-21203463 0.00011 22_[+1]_50 chr17:38574255-38574335 0.00011 48_[+1]_24 chrX:48958180-48958260 0.00011 32_[+1]_40 chr19:4153508-4153588 0.00011 54_[+1]_18 chr19:2841352-2841432 0.00011 59_[+1]_13 chr19:40728023-40728103 0.00011 7_[+1]_65 chr19:3344283-3344363 0.00011 9_[+1]_63 chr12:113658963-11365904 0.00011 3_[+1]_69 chr5:138882652-138882732 0.00011 22_[+1]_50 chr8:142583628-142583708 0.00011 18_[+1]_54 chr7:1211245-1211325 0.00011 41_[+1]_31 chr10:73896106-73896186 0.00011 2_[+1]_70 chr8:25316003-25316083 0.00011 55_[+1]_17 chr17:30058820-30058900 0.00011 49_[+1]_23 chr19:1041089-1041169 0.00011 25_[+1]_47 chr6:6657793-6657873 0.00011 71_[+1]_1 chr1:207996127-207996207 0.00011 29_[+1]_43 chr19:19174643-19174723 0.00011 21_[+1]_51 chr17:1016166-1016246 0.00011 6_[+1]_66 chr17:4870663-4870743 0.00011 57_[+1]_15 chr19:18315099-18315179 0.00011 36_[+1]_36 chr10:74869180-74869260 0.00011 42_[+1]_30 chr19:36193361-36193441 0.00011 [+1]_72 chr15:67539066-67539146 0.00011 33_[+1]_39 chr11:64902505-64902585 0.00017 35_[+1]_37 chr6:36417109-36417189 0.00017 13_[+1]_59 chr16:50059012-50059092 0.00017 60_[+1]_12 chr14:24584279-24584359 0.00017 37_[+1]_35 chr19:20844407-20844487 0.00017 19_[+1]_53 chr19:4968817-4968897 0.00017 38_[+1]_34 chr19:39559095-39559175 0.00017 5_[+1]_67 chr15:43213064-43213144 0.00017 16_[+1]_56 chr15:83738182-83738262 0.00017 6_[+1]_66 chr14:76127241-76127321 0.00017 34_[+1]_38 chr17:79980928-79981008 0.00017 56_[+1]_16 chr2:88927178-88927258 0.00017 28_[+1]_44 chr1:247171403-247171483 0.00017 2_[+1]_70 chr19:41082684-41082764 0.00017 43_[+1]_29 chr19:46148903-46148983 0.00017 19_[+1]_53 chr17:72902618-72902698 0.00017 63_[+1]_9 chr21:44772596-44772676 0.00017 15_[+1]_57 chr11:63953467-63953547 0.00017 50_[+1]_22 chr14:102991105-10299118 0.00017 3_[+1]_69 chr3:152879079-152879159 0.00017 71_[+1]_1 chr11:64140524-64140604 0.00017 41_[+1]_31 chr17:47866536-47866616 0.00017 58_[+1]_14 chrX:48114682-48114762 0.00017 54_[+1]_18 chr19:39817086-39817166 0.00017 35_[+1]_37 chr16:57769274-57769354 0.00017 29_[+1]_43 chr7:158655932-158656012 0.00017 33_[+1]_39 chr1:167691121-167691201 0.00017 52_[+1]_20 chr3:114866187-114866267 0.00017 32_[+1]_40 chr18:14132491-14132571 0.00017 20_[+1]_52 chr19:30370076-30370156 0.00017 6_[+1]_66 chr7:154720061-154720141 0.00017 3_[+1]_69 chr19:16162461-16162541 0.00017 20_[+1]_52 chr19:33184533-33184613 0.00017 72_[+1] chr19:2945008-2945088 0.00017 6_[+1]_66 chr3:149530910-149530990 0.00017 58_[+1]_14 chr1:151254564-151254644 0.00017 19_[+1]_53 chr8:11660026-11660106 0.00017 9_[+1]_63 chr17:43697610-43697690 0.00017 61_[+1]_11 chr14:78083247-78083327 0.00017 45_[+1]_27 chr2:73460457-73460537 0.00017 71_[+1]_1 chr19:1790930-1791010 0.00017 65_[+1]_7 chr17:76237690-76237770 0.00017 14_[+1]_58 chr16:88355111-88355191 0.00017 6_[+1]_66 chr11:124981541-12498162 0.0002 30_[+1]_42 chr13:20437832-20437912 0.00024 54_[+1]_18 chr3:185826961-185827041 0.00024 16_[+1]_56 chr19:58790213-58790293 0.00024 4_[+1]_68 chr9:136154318-136154398 0.00024 11_[+1]_61 chr16:4852953-4853033 0.00024 69_[+1]_3 chr15:75744217-75744297 0.00024 33_[+1]_39 chr17:80325881-80325961 0.00024 49_[+1]_23 chr6:80247163-80247243 0.00024 30_[+1]_42 chr10:99393255-99393335 0.00024 19_[+1]_53 chr6:140469029-140469109 0.00024 [+1]_72 chr6:160183397-160183477 0.00024 44_[+1]_28 chr20:40247071-40247151 0.00024 50_[+1]_22 chr17:44302737-44302817 0.00024 28_[+1]_44 chr1:120838376-120838456 0.0003 39_[+1]_33 chr14:69446099-69446179 0.00041 42_[+1]_30 chr5:159546618-159546698 0.00041 22_[+1]_50 chr10:42863473-42863553 0.00041 41_[+1]_31 chr14:64010138-64010218 0.00041 9_[+1]_63 chr20:3869890-3869970 0.00041 [+1]_72 chr9:35815129-35815209 0.00041 38_[+1]_34 chr19:4472049-4472129 0.00041 37_[+1]_35 chr14:23938598-23938678 0.00041 39_[+1]_33 chr17:79196829-79196909 0.00041 44_[+1]_28 chr17:8534240-8534320 0.00041 9_[+1]_63 chr14:21458014-21458094 0.00041 8_[+1]_64 chr17:45177657-45177737 0.00041 26_[+1]_46 chr22:38054399-38054479 0.00041 38_[+1]_34 chr1:143913400-143913480 0.00041 22_[+1]_50 chrX:47420506-47420586 0.00045 13_[+1]_59 chr1:206138158-206138238 0.00045 11_[+1]_61 chr10:131909417-13190949 0.00051 69_[+1]_3 chr1:38397543-38397623 0.00051 46_[+1]_26 chr19:2375515-2375595 0.00057 20_[+1]_52 chr8:71314370-71314450 0.00086 71_[+1]_1 chr12:122028194-12202827 0.00094 16_[+1]_56 chr2:232646028-232646108 0.00094 4_[+1]_68 chr19:50269790-50269870 0.00094 8_[+1]_64 chr19:42580161-42580241 0.00094 45_[+1]_27 chr14:23790534-23790614 0.00094 34_[+1]_38 chr12:49259699-49259779 0.00094 60_[+1]_12 chr2:108363515-108363595 0.00094 54_[+1]_18 chr2:106468118-106468198 0.00094 6_[+1]_66 chr11:13690081-13690161 0.001 29_[+1]_43 chr19:36248882-36248962 0.001 5_[+1]_67 chr9:37465717-37465797 0.001 54_[+1]_18 chr20:32308163-32308243 0.0012 15_[+1]_57 chr16:50775833-50775913 0.0012 72_[+1] chr5:32313306-32313386 0.0012 71_[+1]_1 chr4:52709138-52709218 0.0012 12_[+1]_60 chr1:150669750-150669830 0.0013 69_[+1]_3 chr19:6425013-6425093 0.0013 72_[+1] chr19:7894847-7894927 0.0013 9_[+1]_63 chr4:142253923-142254003 0.0013 62_[+1]_10 chr16:30382049-30382129 0.0013 38_[+1]_34 chr16:22385987-22386067 0.0013 43_[+1]_29 chr15:69113274-69113354 0.0013 19_[+1]_53 chr2:64978216-64978296 0.0014 4_[+1]_68 chr9:35072925-35073005 0.0014 3_[+1]_69 chr17:27139534-27139614 0.0016 6_[+1]_66 chr12:131836361-13183644 0.0016 15_[+1]_57 chr4:1513552-1513632 0.0016 17_[+1]_55 chr3:107241702-107241782 0.0016 58_[+1]_14 chr1:45140246-45140326 0.0017 68_[+1]_4 chr19:11456999-11457079 0.0017 38_[+1]_34 chr13:26795969-26796049 0.0017 33_[+1]_39 chr17:56353-56433 0.0017 71_[+1]_1 chr16:1728139-1728219 0.0017 69_[+1]_3 chr3:88108224-88108304 0.0017 45_[+1]_27 chr1:153895554-153895634 0.0017 62_[+1]_10 chr6:82957480-82957560 0.0017 58_[+1]_14 chr7:8008269-8008349 0.0017 39_[+1]_33 chr1:25757195-25757275 0.0017 9_[+1]_63 chr21:45175153-45175233 0.0017 19_[+1]_53 chr6:28833996-28834076 0.0019 36_[+1]_36 chrX:49125684-49125764 0.0019 [+1]_72 chr14:23755428-23755508 0.0019 70_[+1]_2 chr17:39943156-39943236 0.0019 65_[+1]_7 chr15:93425662-93425742 0.002 71_[+1]_1 chr17:61627656-61627736 0.002 58_[+1]_14 chr4:175204348-175204428 0.002 34_[+1]_38 chr19:54641284-54641364 0.002 64_[+1]_8 chr12:125534218-12553429 0.0022 44_[+1]_28 chr19:17443628-17443708 0.0022 39_[+1]_33 chr6:112194704-112194784 0.0022 54_[+1]_18 chr19:36606263-36606343 0.0022 44_[+1]_28 chr4:48782457-48782537 0.0022 15_[+1]_57 chr19:41283999-41284079 0.0024 37_[+1]_35 chr2:136288841-136288921 0.0026 1_[+1]_71 chr11:62521656-62521736 0.0026 29_[+1]_43 chr2:71454291-71454371 0.0026 52_[+1]_20 chr15:83478229-83478309 0.0026 13_[+1]_59 chr21:47604561-47604641 0.0029 27_[+1]_45 chr14:54863563-54863643 0.0029 17_[+1]_55 chr14:96001162-96001242 0.0029 20_[+1]_52 chr6:32146053-32146133 0.0032 2_[+1]_70 chr19:46087728-46087808 0.0032 57_[+1]_15 chr20:17662996-17663076 0.0032 17_[+1]_55 chr20:56004776-56004856 0.0032 3_[+1]_69 chr19:39340976-39341056 0.0035 [+1]_72 chrX:49047652-49047732 0.0035 51_[+1]_21 chr19:42901164-42901244 0.0037 18_[+1]_54 chr9:139780764-139780844 0.0037 25_[+1]_47 chr7:100825895-100825975 0.0037 31_[+1]_41 chr19:13906047-13906127 0.0037 28_[+1]_44 chr22:40440648-40440728 0.0037 65_[+1]_7 chr1:153940209-153940289 0.004 36_[+1]_36 chr19:19496443-19496523 0.0043 62_[+1]_10 chrX:47415610-47415690 0.0043 34_[+1]_38 chr2:65283361-65283441 0.0047 45_[+1]_27 chr10:101190514-10119059 0.005 14_[+1]_58 chr17:26368560-26368640 0.005 26_[+1]_46 chr7:23053771-23053851 0.005 40_[+1]_32 chr22:35696150-35696230 0.0054 39_[+1]_33 chr1:113932886-113932966 0.0063 42_[+1]_30 chr22:37172294-37172374 0.0063 40_[+1]_32 chr1:6845233-6845313 0.0063 23_[+1]_49 chr17:17875921-17876001 0.0068 15_[+1]_57 chr21:39488062-39488142 0.0068 13_[+1]_59 chr17:55740484-55740564 0.0078 13_[+1]_59 chr17:58755120-58755200 0.0083 55_[+1]_17 chr1:24742157-24742237 0.0087 30_[+1]_42 chr19:14228650-14228730 0.0087 18_[+1]_54 chrX:46988598-46988678 0.0087 7_[+1]_65 chr14:104181853-10418193 0.0094 38_[+1]_34 chr3:113415633-113415713 0.01 53_[+1]_19 chr8:145159242-145159322 0.01 57_[+1]_15 chr2:74685413-74685493 0.011 59_[+1]_13 chrX:154444575-154444655 0.012 49_[+1]_23 chr12:56211621-56211701 0.012 1_[+1]_71 chr19:45394309-45394389 0.017 43_[+1]_29 chr19:54663591-54663671 0.021 55_[+1]_17 chr11:107798895-10779897 0.023 40_[+1]_32 chr19:50268876-50268956 0.025 55_[+1]_17 chr3:38125835-38125915 0.025 27_[+1]_45 chr14:73925379-73925459 0.028 70_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAATYRG width=8 seqs=250 chr19:46498560-46498640 ( 15) CCAATTGG 1 chr11:4629535-4629615 ( 46) CCAATTGG 1 chr1:120838606-120838686 ( 5) CCAATTGG 1 chr6:159527919-159527999 ( 43) CCAATTGG 1 chr20:47342213-47342293 ( 8) CCAATTAG 1 chr19:37262385-37262465 ( 8) CCAATTAG 1 chr9:80911918-80911998 ( 40) CCAATTAG 1 chr19:47322174-47322254 ( 22) CCAATTAG 1 chr1:8958551-8958631 ( 67) CCAATTAG 1 chr14:21737679-21737759 ( 1) CTAATTAG 1 chr17:73452603-73452683 ( 49) CCAATCGG 1 chr12:2999936-3000016 ( 50) CCAATCGG 1 chr10:4868241-4868321 ( 43) CCAATCGG 1 chr19:36505164-36505244 ( 47) CCAATCGG 1 chr16:90143767-90143847 ( 43) CCAATCGG 1 chr19:45873896-45873976 ( 49) CCAATCGG 1 chr19:50372892-50372972 ( 70) CCAATCGG 1 chr12:53473210-53473290 ( 57) CCAATCGG 1 chr19:18303777-18303857 ( 34) CCGATTGG 1 chr22:20004414-20004494 ( 31) CCGATTGG 1 chr11:31531160-31531240 ( 23) CCGATTGG 1 chr16:69463286-69463366 ( 2) CCGATTGG 1 chr7:130080869-130080949 ( 45) CCGATTGG 1 chr15:98503716-98503796 ( 27) CCGATTGG 1 chr20:45985489-45985569 ( 42) CCGATTGG 1 chr3:126422988-126423068 ( 19) CCGATTGG 1 chr11:67275735-67275815 ( 47) CCGATTGG 1 chr19:55678040-55678120 ( 46) CCAATGGG 1 chr10:120101818-12010189 ( 42) CCAATGGG 1 chr9:133588119-133588199 ( 30) CCAATGGG 1 chr12:109535787-10953586 ( 14) CCAATGGG 1 chr19:17420228-17420308 ( 11) CCAATGGG 1 chr5:172484176-172484256 ( 42) CCAATGGG 1 chr19:9945865-9945945 ( 33) CCAATGGG 1 chr13:20532735-20532815 ( 25) CCAATGGG 1 chr16:67217563-67217643 ( 16) CCAATGGG 1 chr2:73298514-73298594 ( 54) CCAATGGG 1 chr17:74667893-74667973 ( 2) CCAATGGG 1 chr9:34989514-34989594 ( 4) CCAATCAG 1 chr19:8444201-8444281 ( 4) CCAATCAG 1 chr19:12814014-12814094 ( 37) CCAATCAG 1 chr11:59383421-59383501 ( 22) CCAATCAG 1 chr9:35072723-35072803 ( 19) CCAATCAG 1 chr22:42342785-42342865 ( 10) CCAATCAG 1 chr1:150601645-150601725 ( 33) CCAATCAG 1 chr1:23694886-23694966 ( 5) CCAATCAG 1 chr6:31820460-31820540 ( 11) CCAATCAG 1 chr19:21203383-21203463 ( 23) CCAATCAG 1 chr17:38574255-38574335 ( 49) CCAATCAG 1 chrX:48958180-48958260 ( 33) CCAATCAG 1 chr19:4153508-4153588 ( 55) CCAATCAG 1 chr19:2841352-2841432 ( 60) CCAATCAG 1 chr19:40728023-40728103 ( 8) CCAATCAG 1 chr19:3344283-3344363 ( 10) CCAATCAG 1 chr12:113658963-11365904 ( 4) CCAATCAG 1 chr5:138882652-138882732 ( 23) CCAATCAG 1 chr8:142583628-142583708 ( 19) CCAATCAG 1 chr7:1211245-1211325 ( 42) CCAATCAG 1 chr10:73896106-73896186 ( 3) CCAATCAG 1 chr8:25316003-25316083 ( 56) CCAATCAG 1 chr17:30058820-30058900 ( 50) CCAATCAG 1 chr19:1041089-1041169 ( 26) CCAATCAG 1 chr6:6657793-6657873 ( 72) CCAATCAG 1 chr1:207996127-207996207 ( 30) CCAATCAG 1 chr19:19174643-19174723 ( 22) CCAATCAG 1 chr17:1016166-1016246 ( 7) CCAATCAG 1 chr17:4870663-4870743 ( 58) CCAATCAG 1 chr19:18315099-18315179 ( 37) CCAATCAG 1 chr10:74869180-74869260 ( 43) CCAATCAG 1 chr19:36193361-36193441 ( 1) CCAATCAG 1 chr15:67539066-67539146 ( 34) CCAATCAG 1 chr11:64902505-64902585 ( 36) CTGATTGG 1 chr6:36417109-36417189 ( 14) CTGATTGG 1 chr16:50059012-50059092 ( 61) CCAATGAG 1 chr14:24584279-24584359 ( 38) CTGATTGG 1 chr19:20844407-20844487 ( 20) CTGATTGG 1 chr19:4968817-4968897 ( 39) CCAATGAG 1 chr19:39559095-39559175 ( 6) CTGATTGG 1 chr15:43213064-43213144 ( 17) CTGATTGG 1 chr15:83738182-83738262 ( 7) CTGATTGG 1 chr14:76127241-76127321 ( 35) CTGATTGG 1 chr17:79980928-79981008 ( 57) CCAATGAG 1 chr2:88927178-88927258 ( 29) CTGATTGG 1 chr1:247171403-247171483 ( 3) CTGATTGG 1 chr19:41082684-41082764 ( 44) CCAATGAG 1 chr19:46148903-46148983 ( 20) CCAATGAG 1 chr17:72902618-72902698 ( 64) CTGATTGG 1 chr21:44772596-44772676 ( 16) CTGATTGG 1 chr11:63953467-63953547 ( 51) CCAATGAG 1 chr14:102991105-10299118 ( 4) CTGATTGG 1 chr3:152879079-152879159 ( 72) CCAATGAG 1 chr11:64140524-64140604 ( 42) CTGATTGG 1 chr17:47866536-47866616 ( 59) CTGATTGG 1 chrX:48114682-48114762 ( 55) CTGATTGG 1 chr19:39817086-39817166 ( 36) CTGATTGG 1 chr16:57769274-57769354 ( 30) CTGATTGG 1 chr7:158655932-158656012 ( 34) CTGATTGG 1 chr1:167691121-167691201 ( 53) CCAATGAG 1 chr3:114866187-114866267 ( 33) CCAATGAG 1 chr18:14132491-14132571 ( 21) CTGATTGG 1 chr19:30370076-30370156 ( 7) CCAATGAG 1 chr7:154720061-154720141 ( 4) CCAATGAG 1 chr19:16162461-16162541 ( 21) CTGATTGG 1 chr19:33184533-33184613 ( 73) CTGATTGG 1 chr19:2945008-2945088 ( 7) CTGATTGG 1 chr3:149530910-149530990 ( 59) CCAATGAG 1 chr1:151254564-151254644 ( 20) CCAATGAG 1 chr8:11660026-11660106 ( 10) CCAATGAG 1 chr17:43697610-43697690 ( 62) CCAATGAG 1 chr14:78083247-78083327 ( 46) CTGATTGG 1 chr2:73460457-73460537 ( 72) CTGATTGG 1 chr19:1790930-1791010 ( 66) CCAATGAG 1 chr17:76237690-76237770 ( 15) CTGATTGG 1 chr16:88355111-88355191 ( 7) CTGATTGG 1 chr11:124981541-12498162 ( 31) CTAATCAG 1 chr13:20437832-20437912 ( 55) CCCATTGG 1 chr3:185826961-185827041 ( 17) CCCATTGG 1 chr19:58790213-58790293 ( 5) CCCATTGG 1 chr9:136154318-136154398 ( 12) CCTATTGG 1 chr16:4852953-4853033 ( 70) CCTATTGG 1 chr15:75744217-75744297 ( 34) CCTATTGG 1 chr17:80325881-80325961 ( 50) CCTATTGG 1 chr6:80247163-80247243 ( 31) CCCATTGG 1 chr10:99393255-99393335 ( 20) CCCATTGG 1 chr6:140469029-140469109 ( 1) CTGATTAG 1 chr6:160183397-160183477 ( 45) CCCATTGG 1 chr20:40247071-40247151 ( 51) CCCATTGG 1 chr17:44302737-44302817 ( 29) CCCATTGG 1 chr1:120838376-120838456 ( 40) CCAATAGG 1 chr14:69446099-69446179 ( 43) CTCATTGG 1 chr5:159546618-159546698 ( 23) CTCATTGG 1 chr10:42863473-42863553 ( 42) CTTATTGG 1 chr14:64010138-64010218 ( 10) CTCATTGG 1 chr20:3869890-3869970 ( 1) CTCATTGG 1 chr9:35815129-35815209 ( 39) CTCATTGG 1 chr19:4472049-4472129 ( 38) CTTATTGG 1 chr14:23938598-23938678 ( 40) CTTATTGG 1 chr17:79196829-79196909 ( 45) CTCATTGG 1 chr17:8534240-8534320 ( 10) CTCATTGG 1 chr14:21458014-21458094 ( 9) CTTATTGG 1 chr17:45177657-45177737 ( 27) CTCATTGG 1 chr22:38054399-38054479 ( 39) CTTATTGG 1 chr1:143913400-143913480 ( 23) CTTATTGG 1 chrX:47420506-47420586 ( 14) CCAATAAG 1 chr1:206138158-206138238 ( 12) CCAATAAG 1 chr10:131909417-13190949 ( 70) TCAATTAG 1 chr1:38397543-38397623 ( 47) CCAATTGT 1 chr19:2375515-2375595 ( 21) CTGATGGG 1 chr8:71314370-71314450 ( 72) CCCATCAG 1 chr12:122028194-12202827 ( 17) CCAATGGA 1 chr2:232646028-232646108 ( 5) CCAATGGA 1 chr19:50269790-50269870 ( 9) CCAATGGA 1 chr19:42580161-42580241 ( 46) TCGATTGG 1 chr14:23790534-23790614 ( 35) CCAATGGA 1 chr12:49259699-49259779 ( 61) CCAATGGA 1 chr2:108363515-108363595 ( 55) TCGATTGG 1 chr2:106468118-106468198 ( 7) CCAATGGA 1 chr11:13690081-13690161 ( 30) CCAATCAA 1 chr19:36248882-36248962 ( 6) CCAATCAA 1 chr9:37465717-37465797 ( 55) CCAATCAA 1 chr20:32308163-32308243 ( 16) CTCATGGG 1 chr16:50775833-50775913 ( 73) ACGATTGG 1 chr5:32313306-32313386 ( 72) ACGATTGG 1 chr4:52709138-52709218 ( 13) CCAATCGT 1 chr1:150669750-150669830 ( 70) CCAATGAA 1 chr19:6425013-6425093 ( 73) CCAATGAA 1 chr19:7894847-7894927 ( 10) CTTATCAG 1 chr4:142253923-142254003 ( 63) CTGATTGA 1 chr16:30382049-30382129 ( 39) CCAATGAA 1 chr16:22385987-22386067 ( 44) CCAATCGC 1 chr15:69113274-69113354 ( 20) CCAATCGC 1 chr2:64978216-64978296 ( 5) CCAATGGT 1 chr9:35072925-35073005 ( 4) CCACTTGG 1 chr17:27139534-27139614 ( 7) CCAATGGC 1 chr12:131836361-13183644 ( 16) CCAATCAT 1 chr4:1513552-1513632 ( 18) CCAATCAT 1 chr3:107241702-107241782 ( 59) CCAATGGC 1 chr1:45140246-45140326 ( 69) CTAATTCG 1 chr19:11456999-11457079 ( 39) CTAATCGT 1 chr13:26795969-26796049 ( 34) CCAATCAC 1 chr17:56353-56433 ( 72) ATGATTGG 1 chr16:1728139-1728219 ( 70) ATGATTGG 1 chr3:88108224-88108304 ( 46) ATGATTGG 1 chr1:153895554-153895634 ( 63) ATGATTGG 1 chr6:82957480-82957560 ( 59) ATGATTGG 1 chr7:8008269-8008349 ( 40) CCAATCAC 1 chr1:25757195-25757275 ( 10) ATGATTGG 1 chr21:45175153-45175233 ( 20) ATGATTGG 1 chr6:28833996-28834076 ( 37) TCCATTGG 1 chrX:49125684-49125764 ( 1) TCCATTGG 1 chr14:23755428-23755508 ( 71) TCTATTGG 1 chr17:39943156-39943236 ( 66) TCTATTGG 1 chr15:93425662-93425742 ( 72) CCAATAGA 1 chr17:61627656-61627736 ( 59) CCAATGAC 1 chr4:175204348-175204428 ( 35) TTAATGAG 1 chr19:54641284-54641364 ( 65) CCAATAGA 1 chr12:125534218-12553429 ( 45) GCGATTGG 1 chr19:17443628-17443708 ( 40) CCTATAAG 1 chr6:112194704-112194784 ( 55) ACCATTGG 1 chr19:36606263-36606343 ( 45) GCGATTGG 1 chr4:48782457-48782537 ( 16) CTAATCAT 1 chr19:41283999-41284079 ( 38) CCAATCCG 1 chr2:136288841-136288921 ( 2) CGGATTGG 1 chr11:62521656-62521736 ( 30) CGGATTGG 1 chr2:71454291-71454371 ( 53) TTTATTGG 1 chr15:83478229-83478309 ( 14) TTCATTGG 1 chr21:47604561-47604641 ( 28) CCAGTGGG 1 chr14:54863563-54863643 ( 18) GCGATTAG 1 chr14:96001162-96001242 ( 21) CCAATAGT 1 chr6:32146053-32146133 ( 3) CCAATAGC 1 chr19:46087728-46087808 ( 58) GTGATTGG 1 chr20:17662996-17663076 ( 18) CCAGTCAG 1 chr20:56004776-56004856 ( 4) CCAATAGC 1 chr19:39340976-39341056 ( 1) CTAATCCG 1 chrX:49047652-49047732 ( 52) TTCATTAG 1 chr19:42901164-42901244 ( 19) CCACTCAG 1 chr9:139780764-139780844 ( 26) CTGGTTGG 1 chr7:100825895-100825975 ( 32) CCACTCAG 1 chr19:13906047-13906127 ( 29) CTGGTTGG 1 chr22:40440648-40440728 ( 66) CCAGTGAG 1 chr1:153940209-153940289 ( 37) GCCATTGG 1 chr19:19496443-19496523 ( 63) TCCATGGG 1 chrX:47415610-47415690 ( 35) CCTATCAA 1 chr2:65283361-65283441 ( 46) CGTATTGG 1 chr10:101190514-10119059 ( 15) GCTATTAG 1 chr17:26368560-26368640 ( 27) CGGATCGG 1 chr7:23053771-23053851 ( 41) CCTATCGC 1 chr22:35696150-35696230 ( 40) CCAGTAGG 1 chr1:113932886-113932966 ( 43) CTCGTTGG 1 chr22:37172294-37172374 ( 41) GTAATTGA 1 chr1:6845233-6845313 ( 24) CCACTAGG 1 chr17:17875921-17876001 ( 16) CCAAAGGG 1 chr21:39488062-39488142 ( 14) ATAATTAC 1 chr17:55740484-55740564 ( 14) CCAGTTGC 1 chr17:58755120-58755200 ( 56) CCGCTGAG 1 chr1:24742157-24742237 ( 31) CCACTTGC 1 chr19:14228650-14228730 ( 19) ACTATAGG 1 chrX:46988598-46988678 ( 8) ATGATAAG 1 chr14:104181853-10418193 ( 39) CCAATCCA 1 chr3:113415633-113415713 ( 54) CCAAGGAG 1 chr8:145159242-145159322 ( 58) CTGAGTGG 1 chr2:74685413-74685493 ( 60) TGGATTGG 1 chrX:154444575-154444655 ( 50) CTTGTGGG 1 chr12:56211621-56211701 ( 2) TCAATAGC 1 chr19:45394309-45394389 ( 44) CCAATACA 1 chr19:54663591-54663671 ( 56) CCTCTTGT 1 chr11:107798895-10779897 ( 41) TTCCTTGG 1 chr19:50268876-50268956 ( 56) CCAAAGGT 1 chr3:38125835-38125915 ( 28) GTGATGGT 1 chr14:73925379-73925459 ( 71) TTAGTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.16993 E= 1.9e-128 -205 158 -314 -176 -1461 125 -382 47 135 -140 -14 -130 211 -316 -282 -1461 -475 -1461 -514 218 -185 -14 -44 112 71 -384 116 -1461 -150 -235 154 -218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 250 E= 1.9e-128 0.052000 0.852000 0.032000 0.064000 0.000000 0.680000 0.020000 0.300000 0.548000 0.108000 0.256000 0.088000 0.928000 0.032000 0.040000 0.000000 0.008000 0.000000 0.008000 0.984000 0.060000 0.260000 0.208000 0.472000 0.352000 0.020000 0.628000 0.000000 0.076000 0.056000 0.820000 0.048000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATYRG MEME-1 regular expression -------------------------------------------------------------------------------- C[CT][AG]AT[TCG][GA]G -------------------------------------------------------------------------------- Time 4.89 secs. ******************************************************************************** ******************************************************************************** MOTIF YGATTGGY MEME-2 width = 8 sites = 74 llr = 604 E-value = 5.4e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::::1 pos.-specific C 33:::::5 probability G 16:::aa: matrix T 52:aa::4 bits 2.2 *** 2.0 *** 1.8 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.8 bits) 0.9 ***** 0.7 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGATTGGC consensus CC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:44772596-44772676 48 1.42e-05 AGAAGGTATC TGATTGGC TGCAGGCATG chrX:48114682-48114762 25 1.42e-05 TTCTGACTTC TGATTGGC CAGATGGAGT chr8:11660026-11660106 55 1.42e-05 CTTCCGCGAC TGATTGGC CGGGGTCTTC chr2:106468118-106468198 23 1.42e-05 GAGCTGTCAT TGATTGGC TGTCCCTCTG chr19:2375515-2375595 48 1.42e-05 GTGGGAACTG TGATTGGC AGGCCAGGGT chr21:45175153-45175233 53 1.42e-05 CACTGAGTGA TGATTGGC TGGGCTTTCG chr17:76237690-76237770 64 1.42e-05 CCACACTCTC TGATTGGC CAGTCAGTG chr17:26368560-26368640 1 2.49e-05 . TGATTGGT CTTTCTATCT chr20:47342213-47342293 33 2.49e-05 ttgctcaaaa tgattggt tcaggagtgc chr12:122028194-12202827 62 2.49e-05 TACTCAATTG TGATTGGT TGACGATCCC chr19:39559095-39559175 72 2.49e-05 cacagagtgc tgattggt g chr11:59383421-59383501 3 2.49e-05 TT TGATTGGT TCAGATAAAG chr16:69463286-69463366 28 2.49e-05 tacagagtgc tgattggt gcatttacaa chr10:131909417-13190949 1 2.49e-05 . TGATTGGT TGTTAGGCCT chr15:83738182-83738262 56 2.49e-05 tacagagtgc tgattggt ccattttaca chr17:72902618-72902698 24 2.49e-05 cacagagcac tgattggt gcatttacaa chr4:1513552-1513632 50 2.49e-05 ctaaccacag tgattggt ccagggacag chr8:142583628-142583708 53 2.49e-05 ctcttcatcc tgattggt cccctcatgc chr7:158655932-158656012 60 2.49e-05 tacagagtgc tgattggt gcgtttacaa chr19:30370076-30370156 43 2.49e-05 caggccactg tgattggt tcaggggtgg chr19:16162461-16162541 55 2.49e-05 cttcagcctc tgattggt cacagggcca chr19:33184533-33184613 49 2.49e-05 gacagagcac tgattggt gcgtttttac chr6:159527919-159527999 8 2.49e-05 cagcctc tgattggt tgggggccca chr19:47322174-47322254 2 2.49e-05 c tgattggt tgtgggagag chr19:1790930-1791010 30 2.49e-05 ctggccatgg tgattggt tcagagaagg chr10:120101818-12010189 21 3.93e-05 TCGCGCCTTC TCATTGGC TCCTGCGTCT chr16:4852953-4853033 32 3.93e-05 TCGCGCTCAC TCATTGGC CGGCAGGACA chr11:107798895-10779897 1 3.93e-05 . TCATTGGC TGACCCTCCC chr9:35072925-35073005 19 3.93e-05 TGGCTCCAGT TCATTGGC TCCGGAGTTT chr19:36193361-36193441 58 3.93e-05 CCCTGGCGTC TCATTGGC TATGCTTGAG chr2:232646028-232646108 26 6.88e-05 CCAGCCTTGG CGATTGGC ATCTCAACCA chr8:71314370-71314450 16 6.88e-05 CCGGTCCGCA CGATTGGC TCACCGACAC chr19:19174643-19174723 30 6.88e-05 TGCCAATCAG CGATTGGC TTTAGGGGCT chr6:80247163-80247243 62 9.39e-05 ACGGCCCTTT TTATTGGC TTCAGTGGAA chr11:67275735-67275815 8 9.39e-05 AGCCTCC TTATTGGC CGAGACCTGC chr1:143913400-143913480 65 1.02e-04 TCTCTACTCT TTATTGGT TAAAATTC chr19:20844407-20844487 50 1.13e-04 CCACCATCCC TGATTGGA TAATGCTTAA chr12:131836361-13183644 47 1.13e-04 ctcatcacag tgattgga taacatgtaa chr19:2945008-2945088 39 1.13e-04 TCCGCACCCC TGATTGGA GAATTCTCCA chr14:69446099-69446179 1 1.32e-04 . CCATTGGC CAGGCCGAGT chr19:58790213-58790293 63 1.32e-04 GCGGAGACTC CCATTGGC CGAGGGCTGT chr19:45873896-45873976 11 1.32e-04 TATTACGAGA CCATTGGC TAACCTGCCC chrX:49047652-49047732 1 1.32e-04 . CCATTGGC TCTTCATTCT chr16:57769274-57769354 61 1.32e-04 GTTGCTCAAG CCATTGGC GCAGCCGCCA chr1:207996127-207996207 15 1.32e-04 TTTTCACCTG CCATTGGC CCACCCACCA chr14:23755428-23755508 8 1.32e-04 GGGCTGG CCATTGGC TGCGTGGGTC chr17:45177657-45177737 59 1.32e-04 ATCGTGAGCG CCATTGGC TGACTGATGG chr17:44302737-44302817 61 1.32e-04 ATCGTGAGCG CCATTGGC TGAGCAATGG chr4:142253923-142254003 23 1.46e-04 tacagagtgt ccattggt gcattcacaa chr19:1041089-1041169 61 1.46e-04 GGTTGCGCTC CCATTGGT TTACTCCACC chr14:64010138-64010218 70 1.79e-04 ACCTGATCAG GGATTGGC GGC chr9:136154318-136154398 56 1.79e-04 tgtccttccc ctattggc tggGGtaacg chr12:125534218-12553429 5 1.79e-04 TTCA GGATTGGC TGGGAGGTGC chr17:55740484-55740564 3 1.79e-04 GG GGATTGGC TGCCCAGTTG chr17:79196829-79196909 5 1.79e-04 CTCC GGATTGGC CCTTCACGCT chr19:46087728-46087808 26 1.79e-04 AAACCCCCCA CTATTGGC CACTGGACTT chr19:42580161-42580241 16 1.79e-04 ACGCTCCTCA CTATTGGC CCAAGCCTCA chr17:58755120-58755200 34 1.79e-04 TTTGCTTCTG GGATTGGC TAGAGGGGGT chr15:75744217-75744297 1 1.79e-04 . CTATTGGC GGGGAGCTTC chr6:160183397-160183477 4 1.79e-04 CTT GGATTGGC TCCCGGGGTA chr19:7894847-7894927 2 2.04e-04 G CTATTGGT CTTATCAGGT chr11:31531160-31531240 56 2.04e-04 CGTCTCAGTC CTATTGGT TACGAGAGCC chr22:42342785-42342865 44 2.04e-04 CGCCGAGCAC CTATTGGT GGGTGCGTCC chr2:73460457-73460537 43 2.04e-04 AGCCTACTTC CTATTGGT CGAGAGAAGT chr19:39817086-39817166 5 2.15e-04 CTCC TCATTGGA TAGTGCAGTC chr7:8008269-8008349 4 2.15e-04 TTG TCATTGGA CACTGCTTCT chr10:99393255-99393335 62 2.56e-04 ACGCCACTCC GCATTGGC CCAGCCCGGC chr2:88927178-88927258 73 2.84e-04 TTCCTACAAC AGATTGGC chr17:74667893-74667973 34 2.84e-04 GCTTCGCGGC AGATTGGC AGGTGCTTGA chrX:49125684-49125764 53 3.09e-04 TTTAGCCTTC GTATTGGC TAGCTCCACC chr16:50775833-50775913 8 3.34e-04 CTGGCAG CCATTGGA GGAAGGTCTG chr19:46148903-46148983 68 3.58e-04 GGATGCAGAG GGATTGGA AGGGG chr17:56353-56433 31 4.17e-04 TGAGGAAACG TGATTGGG CGAGTGTTTC chr17:17875921-17876001 50 4.17e-04 ATTCCTCTGT ATATTGGT CAATCTAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:44772596-44772676 1.4e-05 47_[+2]_25 chrX:48114682-48114762 1.4e-05 24_[+2]_48 chr8:11660026-11660106 1.4e-05 54_[+2]_18 chr2:106468118-106468198 1.4e-05 22_[+2]_50 chr19:2375515-2375595 1.4e-05 47_[+2]_25 chr21:45175153-45175233 1.4e-05 52_[+2]_20 chr17:76237690-76237770 1.4e-05 63_[+2]_9 chr17:26368560-26368640 2.5e-05 [+2]_72 chr20:47342213-47342293 2.5e-05 32_[+2]_40 chr12:122028194-12202827 2.5e-05 61_[+2]_11 chr19:39559095-39559175 2.5e-05 71_[+2]_1 chr11:59383421-59383501 2.5e-05 2_[+2]_70 chr16:69463286-69463366 2.5e-05 27_[+2]_45 chr10:131909417-13190949 2.5e-05 [+2]_72 chr15:83738182-83738262 2.5e-05 55_[+2]_17 chr17:72902618-72902698 2.5e-05 23_[+2]_49 chr4:1513552-1513632 2.5e-05 49_[+2]_23 chr8:142583628-142583708 2.5e-05 52_[+2]_20 chr7:158655932-158656012 2.5e-05 59_[+2]_13 chr19:30370076-30370156 2.5e-05 42_[+2]_30 chr19:16162461-16162541 2.5e-05 54_[+2]_18 chr19:33184533-33184613 2.5e-05 48_[+2]_24 chr6:159527919-159527999 2.5e-05 7_[+2]_65 chr19:47322174-47322254 2.5e-05 1_[+2]_71 chr19:1790930-1791010 2.5e-05 29_[+2]_43 chr10:120101818-12010189 3.9e-05 20_[+2]_52 chr16:4852953-4853033 3.9e-05 31_[+2]_41 chr11:107798895-10779897 3.9e-05 [+2]_72 chr9:35072925-35073005 3.9e-05 18_[+2]_54 chr19:36193361-36193441 3.9e-05 57_[+2]_15 chr2:232646028-232646108 6.9e-05 25_[+2]_47 chr8:71314370-71314450 6.9e-05 15_[+2]_57 chr19:19174643-19174723 6.9e-05 29_[+2]_43 chr6:80247163-80247243 9.4e-05 61_[+2]_11 chr11:67275735-67275815 9.4e-05 7_[+2]_65 chr1:143913400-143913480 0.0001 64_[+2]_8 chr19:20844407-20844487 0.00011 49_[+2]_23 chr12:131836361-13183644 0.00011 46_[+2]_26 chr19:2945008-2945088 0.00011 38_[+2]_34 chr14:69446099-69446179 0.00013 [+2]_72 chr19:58790213-58790293 0.00013 62_[+2]_10 chr19:45873896-45873976 0.00013 10_[+2]_62 chrX:49047652-49047732 0.00013 [+2]_72 chr16:57769274-57769354 0.00013 60_[+2]_12 chr1:207996127-207996207 0.00013 14_[+2]_58 chr14:23755428-23755508 0.00013 7_[+2]_65 chr17:45177657-45177737 0.00013 58_[+2]_14 chr17:44302737-44302817 0.00013 60_[+2]_12 chr4:142253923-142254003 0.00015 22_[+2]_50 chr19:1041089-1041169 0.00015 60_[+2]_12 chr14:64010138-64010218 0.00018 69_[+2]_3 chr9:136154318-136154398 0.00018 55_[+2]_17 chr12:125534218-12553429 0.00018 4_[+2]_68 chr17:55740484-55740564 0.00018 2_[+2]_70 chr17:79196829-79196909 0.00018 4_[+2]_68 chr19:46087728-46087808 0.00018 25_[+2]_47 chr19:42580161-42580241 0.00018 15_[+2]_57 chr17:58755120-58755200 0.00018 33_[+2]_39 chr15:75744217-75744297 0.00018 [+2]_72 chr6:160183397-160183477 0.00018 3_[+2]_69 chr19:7894847-7894927 0.0002 1_[+2]_71 chr11:31531160-31531240 0.0002 55_[+2]_17 chr22:42342785-42342865 0.0002 43_[+2]_29 chr2:73460457-73460537 0.0002 42_[+2]_30 chr19:39817086-39817166 0.00021 4_[+2]_68 chr7:8008269-8008349 0.00021 3_[+2]_69 chr10:99393255-99393335 0.00026 61_[+2]_11 chr2:88927178-88927258 0.00028 72_[+2] chr17:74667893-74667973 0.00028 33_[+2]_39 chrX:49125684-49125764 0.00031 52_[+2]_20 chr16:50775833-50775913 0.00033 7_[+2]_65 chr19:46148903-46148983 0.00036 67_[+2]_5 chr17:56353-56433 0.00042 30_[+2]_42 chr17:17875921-17876001 0.00042 49_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGATTGGY width=8 seqs=74 chr21:44772596-44772676 ( 48) TGATTGGC 1 chrX:48114682-48114762 ( 25) TGATTGGC 1 chr8:11660026-11660106 ( 55) TGATTGGC 1 chr2:106468118-106468198 ( 23) TGATTGGC 1 chr19:2375515-2375595 ( 48) TGATTGGC 1 chr21:45175153-45175233 ( 53) TGATTGGC 1 chr17:76237690-76237770 ( 64) TGATTGGC 1 chr17:26368560-26368640 ( 1) TGATTGGT 1 chr20:47342213-47342293 ( 33) TGATTGGT 1 chr12:122028194-12202827 ( 62) TGATTGGT 1 chr19:39559095-39559175 ( 72) TGATTGGT 1 chr11:59383421-59383501 ( 3) TGATTGGT 1 chr16:69463286-69463366 ( 28) TGATTGGT 1 chr10:131909417-13190949 ( 1) TGATTGGT 1 chr15:83738182-83738262 ( 56) TGATTGGT 1 chr17:72902618-72902698 ( 24) TGATTGGT 1 chr4:1513552-1513632 ( 50) TGATTGGT 1 chr8:142583628-142583708 ( 53) TGATTGGT 1 chr7:158655932-158656012 ( 60) TGATTGGT 1 chr19:30370076-30370156 ( 43) TGATTGGT 1 chr19:16162461-16162541 ( 55) TGATTGGT 1 chr19:33184533-33184613 ( 49) TGATTGGT 1 chr6:159527919-159527999 ( 8) TGATTGGT 1 chr19:47322174-47322254 ( 2) TGATTGGT 1 chr19:1790930-1791010 ( 30) TGATTGGT 1 chr10:120101818-12010189 ( 21) TCATTGGC 1 chr16:4852953-4853033 ( 32) TCATTGGC 1 chr11:107798895-10779897 ( 1) TCATTGGC 1 chr9:35072925-35073005 ( 19) TCATTGGC 1 chr19:36193361-36193441 ( 58) TCATTGGC 1 chr2:232646028-232646108 ( 26) CGATTGGC 1 chr8:71314370-71314450 ( 16) CGATTGGC 1 chr19:19174643-19174723 ( 30) CGATTGGC 1 chr6:80247163-80247243 ( 62) TTATTGGC 1 chr11:67275735-67275815 ( 8) TTATTGGC 1 chr1:143913400-143913480 ( 65) TTATTGGT 1 chr19:20844407-20844487 ( 50) TGATTGGA 1 chr12:131836361-13183644 ( 47) TGATTGGA 1 chr19:2945008-2945088 ( 39) TGATTGGA 1 chr14:69446099-69446179 ( 1) CCATTGGC 1 chr19:58790213-58790293 ( 63) CCATTGGC 1 chr19:45873896-45873976 ( 11) CCATTGGC 1 chrX:49047652-49047732 ( 1) CCATTGGC 1 chr16:57769274-57769354 ( 61) CCATTGGC 1 chr1:207996127-207996207 ( 15) CCATTGGC 1 chr14:23755428-23755508 ( 8) CCATTGGC 1 chr17:45177657-45177737 ( 59) CCATTGGC 1 chr17:44302737-44302817 ( 61) CCATTGGC 1 chr4:142253923-142254003 ( 23) CCATTGGT 1 chr19:1041089-1041169 ( 61) CCATTGGT 1 chr14:64010138-64010218 ( 70) GGATTGGC 1 chr9:136154318-136154398 ( 56) CTATTGGC 1 chr12:125534218-12553429 ( 5) GGATTGGC 1 chr17:55740484-55740564 ( 3) GGATTGGC 1 chr17:79196829-79196909 ( 5) GGATTGGC 1 chr19:46087728-46087808 ( 26) CTATTGGC 1 chr19:42580161-42580241 ( 16) CTATTGGC 1 chr17:58755120-58755200 ( 34) GGATTGGC 1 chr15:75744217-75744297 ( 1) CTATTGGC 1 chr6:160183397-160183477 ( 4) GGATTGGC 1 chr19:7894847-7894927 ( 2) CTATTGGT 1 chr11:31531160-31531240 ( 56) CTATTGGT 1 chr22:42342785-42342865 ( 44) CTATTGGT 1 chr2:73460457-73460537 ( 43) CTATTGGT 1 chr19:39817086-39817166 ( 5) TCATTGGA 1 chr7:8008269-8008349 ( 4) TCATTGGA 1 chr10:99393255-99393335 ( 62) GCATTGGC 1 chr2:88927178-88927258 ( 73) AGATTGGC 1 chr17:74667893-74667973 ( 34) AGATTGGC 1 chrX:49125684-49125764 ( 53) GTATTGGC 1 chr16:50775833-50775913 ( 8) CCATTGGA 1 chr19:46148903-46148983 ( 68) GGATTGGA 1 chr17:56353-56433 ( 31) TGATTGGG 1 chr17:17875921-17876001 ( 50) ATATTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.36683 E= 5.4e-041 -241 12 -121 128 -1285 -8 98 -30 221 -1285 -1285 -1285 -1285 -1285 -1285 221 -1285 -1285 -1285 221 -1285 -1285 183 -1285 -1285 -1285 183 -1285 -119 92 -438 70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 5.4e-041 0.040541 0.310811 0.121622 0.527027 0.000000 0.270270 0.554054 0.175676 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.094595 0.540541 0.013514 0.351351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATTGGY MEME-2 regular expression -------------------------------------------------------------------------------- [TC][GC]ATTGG[CT] -------------------------------------------------------------------------------- Time 8.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAATCRS MEME-3 width = 8 sites = 71 llr = 568 E-value = 2.7e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::aa:252 pos.-specific C aa:::523 probability G :::::335 matrix T ::::a::1 bits 2.2 *** 2.0 *** 1.8 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.5 bits) 0.9 ***** 0.7 ***** * 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CCAATCAG consensus GGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:47342213-47342293 72 1.44e-05 caggtctcag ccaatcag a chr1:23694886-23694966 38 1.44e-05 AACCACTCTG CCAATCAG AGGCGGAACA chr6:31820460-31820540 60 1.44e-05 gtaaaacgga ccaatcag ctctctgtaa chr16:90143767-90143847 13 1.44e-05 GTGCTGCCAG CCAATCAG CGTTGAGACC chrX:48958180-48958260 65 1.44e-05 TCGTCATCGA CCAATCAG AGCCCACC chr19:37262385-37262465 43 1.44e-05 tggcccggga ccaatcag gagctgaagt chr19:2841352-2841432 28 1.44e-05 GGGGAATTCT CCAATCAG AGTCGCCGAC chr8:142583628-142583708 73 1.44e-05 cctcatgcaa ccaatcag chr7:1211245-1211325 18 1.44e-05 gtaaaatgca ccaatcag cactctgtaa chr10:73896106-73896186 44 1.44e-05 tgtaaacgca ccaatcag cactctgtga chr17:30058820-30058900 25 1.44e-05 tgtaaatgca ccaatcag cactctgtaa chr6:6657793-6657873 31 1.44e-05 attgcaagat ccaatcag atcatgcctc chr12:53473210-53473290 17 1.44e-05 CCCATCTAAG CCAATCAG CAACGGCCTC chr17:1016166-1016246 68 1.44e-05 AACGCCTGAC CCAATCAG CAAGC chr10:74869180-74869260 18 1.44e-05 tgtaaacaca ccaatcag cactctgtaa chr1:8958551-8958631 42 1.44e-05 tataaatgca ccaatcag cactctgtaa chr15:67539066-67539146 59 1.44e-05 caaaaacgca ccaatcag cactctgtgt chr9:34989514-34989594 19 2.91e-05 CAGATCCACA CCAATCAC TGCCTGGAAT chr14:21737679-21737759 37 2.91e-05 ACAATGATAT CCAATCAC AATTAGCAGT chr16:50775833-50775913 38 2.91e-05 ACAGGGAGGC CCAATCAC GGCCCGCTCA chr11:4629535-4629615 14 2.91e-05 GTGGGGGCAG CCAATCAC AGGCAGGGAC chr11:64140524-64140604 13 2.91e-05 ccacactgaa ccaatcac tgtggccagg chr19:19174643-19174723 68 2.91e-05 TTCATACTCG CCAATCAC TGTCG chr11:64902505-64902585 63 6.52e-05 GTTACGCGGC CCAATAAG AAAAAGAATG chr17:73452603-73452683 9 6.52e-05 CCGCGTAG CCAATAAG AAGCCAGAAT chr12:2999936-3000016 20 6.52e-05 CCGGCAATAG CCAATGAG ACAGGAGCCA chr19:55678040-55678120 5 6.52e-05 CTGA CCAATGAG AGTGAGCGAG chr19:40728023-40728103 72 6.52e-05 CGGAATTCGA CCAATGAG G chr13:20532735-20532815 69 6.52e-05 TCCCCGTCAG CCAATGAg cgcg chr19:3344283-3344363 70 6.52e-05 TATGTCCTGG CCAATGAG AAT chr16:67217563-67217643 57 6.52e-05 TGACCTGCAG CCAATAAG TGGTGGGGGA chr7:154720061-154720141 45 6.52e-05 AGTAAAATGT CCaatgag agaaaaggtt chr12:109535787-10953586 45 1.29e-04 GCCCATGGCG CCAATCCG CGCGCCGCAG chr19:50269790-50269870 40 1.29e-04 ACAGATCTCG CCAATCCG CGACGCCTGC chr19:9945865-9945945 11 1.29e-04 GGCCAGAAAG CCAATCCG GACCGTTAGG chrX:47420506-47420586 46 1.29e-04 TCCCGCAGAG CCAATAAC GAGAGTCCGA chr19:54641284-54641364 25 1.29e-04 GAGCGATCAC CCAATCCG CGAAAGGGGG chr19:41082684-41082764 13 1.48e-04 GGCGCTCTGT CCAATCGC TAGTGACTCC chr1:167691121-167691201 22 1.48e-04 GCCTGACTCT CCAATCGC GTCCTTAAAA chr16:22385987-22386067 2 1.48e-04 A CCAATCGC GAGCGGGCTG chr17:79980928-79981008 6 1.67e-04 CGCAG CCAATGAA CTTGGAACGC chr3:152879079-152879159 30 1.67e-04 TTGGCGGCAG CCAATGAA CAACACTTAG chr3:88108224-88108304 67 1.67e-04 CTTGCGTCTT CCAATAAA AACTGG chr1:120838606-120838686 51 1.67e-04 GGAATTTTAA CCAATAAA GAGTAGAGGC chr19:36505164-36505244 6 2.14e-04 GCAGG CCAATGGG AGCTCCCAGA chr7:130080869-130080949 71 2.14e-04 CCCCGGCCGG CCAATGGG GG chr19:46148903-46148983 51 2.14e-04 GGGCCCTTCA CCAATAGG GATGCAGAGG chr9:80911918-80911998 10 2.14e-04 GAAGCGCGA CCAATGGG GATGTGAGCT chr2:73298514-73298594 12 2.14e-04 GCGCCAAGGG CCAATAGG AAGCCAAGAT chr3:126422988-126423068 45 2.14e-04 CTGGCGTCGG CCAATAGG ACGTGGCTTT chr6:80247163-80247243 5 2.25e-04 GCAG CCAATCAT GATGACTCTA chr19:4472049-4472129 3 2.45e-04 AT CCAATCCC GTTAACTGCT chr12:49259699-49259779 30 2.45e-04 TCTGTTACGC CCAATCCC TGAGGTGGGA chr1:38397543-38397623 6 2.45e-04 CTCCT CCAATCCC CACCGTTTCT chr19:50372892-50372972 19 2.45e-04 ACTCAGCGAG CCAATCCC TTAATAGAAG chr10:101190514-10119059 23 2.93e-04 ACGCTATTAG CCAATCCA AGAAAACAAT chr5:32313306-32313386 39 2.93e-04 TTTCCTCCAA CCAATCCA GAGAGCGTTC chr17:61627656-61627736 20 3.26e-04 AACATTTAAC CCAATAGC GAGGAGATTT chr9:133588119-133588199 73 3.26e-04 TTCTCGGAGG CCAATGGC chr17:43697610-43697690 31 3.26e-04 CATTGCTCAG CCAATGGC GCTCACGATG chr15:69113274-69113354 51 3.26e-04 CGGGCAACAG CCAATGGC AGTGGCGGCG chr20:56004776-56004856 64 3.26e-04 GAGCGAGTGA CCAATAGC TGTGCTCTG chr16:50059012-50059092 20 3.51e-04 CAAGAGACAG CCAATAGA AAGCTGTCTT chr19:17420228-17420308 41 3.51e-04 CTGGATGCGG CCAATGGA AGCGTGCAAA chr5:172484176-172484256 11 3.51e-04 GCTCTGGCGT CCAATGGA GCGGGCGGAT chr16:30382049-30382129 7 3.51e-04 AAATAA CCAATAGA AACGCAGGGG chr12:113658963-11365904 36 3.51e-04 TGACCTTTCA CCAATGGA AAGACTTGGG chr1:207996127-207996207 70 3.51e-04 CCTCCCCTGG CCAATGGA AGG chr16:57769274-57769354 15 3.70e-04 ATTGAGTTTT CCAATAAT GCGGACGCTG chr6:32146053-32146133 63 4.59e-04 ACCCTTTGGG CCAATCCT TTCTTTTGAA chr19:36248882-36248962 45 4.59e-04 GTCGTCCCAG CCAATCCT GAAACACCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:47342213-47342293 1.4e-05 71_[+3]_1 chr1:23694886-23694966 1.4e-05 37_[+3]_35 chr6:31820460-31820540 1.4e-05 59_[+3]_13 chr16:90143767-90143847 1.4e-05 12_[+3]_60 chrX:48958180-48958260 1.4e-05 64_[+3]_8 chr19:37262385-37262465 1.4e-05 42_[+3]_30 chr19:2841352-2841432 1.4e-05 27_[+3]_45 chr8:142583628-142583708 1.4e-05 72_[+3] chr7:1211245-1211325 1.4e-05 17_[+3]_55 chr10:73896106-73896186 1.4e-05 43_[+3]_29 chr17:30058820-30058900 1.4e-05 24_[+3]_48 chr6:6657793-6657873 1.4e-05 30_[+3]_42 chr12:53473210-53473290 1.4e-05 16_[+3]_56 chr17:1016166-1016246 1.4e-05 67_[+3]_5 chr10:74869180-74869260 1.4e-05 17_[+3]_55 chr1:8958551-8958631 1.4e-05 41_[+3]_31 chr15:67539066-67539146 1.4e-05 58_[+3]_14 chr9:34989514-34989594 2.9e-05 18_[+3]_54 chr14:21737679-21737759 2.9e-05 36_[+3]_36 chr16:50775833-50775913 2.9e-05 37_[+3]_35 chr11:4629535-4629615 2.9e-05 13_[+3]_59 chr11:64140524-64140604 2.9e-05 12_[+3]_60 chr19:19174643-19174723 2.9e-05 67_[+3]_5 chr11:64902505-64902585 6.5e-05 62_[+3]_10 chr17:73452603-73452683 6.5e-05 8_[+3]_64 chr12:2999936-3000016 6.5e-05 19_[+3]_53 chr19:55678040-55678120 6.5e-05 4_[+3]_68 chr19:40728023-40728103 6.5e-05 71_[+3]_1 chr13:20532735-20532815 6.5e-05 68_[+3]_4 chr19:3344283-3344363 6.5e-05 69_[+3]_3 chr16:67217563-67217643 6.5e-05 56_[+3]_16 chr7:154720061-154720141 6.5e-05 44_[+3]_28 chr12:109535787-10953586 0.00013 44_[+3]_28 chr19:50269790-50269870 0.00013 39_[+3]_33 chr19:9945865-9945945 0.00013 10_[+3]_62 chrX:47420506-47420586 0.00013 45_[+3]_27 chr19:54641284-54641364 0.00013 24_[+3]_48 chr19:41082684-41082764 0.00015 12_[+3]_60 chr1:167691121-167691201 0.00015 21_[+3]_51 chr16:22385987-22386067 0.00015 1_[+3]_71 chr17:79980928-79981008 0.00017 5_[+3]_67 chr3:152879079-152879159 0.00017 29_[+3]_43 chr3:88108224-88108304 0.00017 66_[+3]_6 chr1:120838606-120838686 0.00017 50_[+3]_22 chr19:36505164-36505244 0.00021 5_[+3]_67 chr7:130080869-130080949 0.00021 70_[+3]_2 chr19:46148903-46148983 0.00021 50_[+3]_22 chr9:80911918-80911998 0.00021 9_[+3]_63 chr2:73298514-73298594 0.00021 11_[+3]_61 chr3:126422988-126423068 0.00021 44_[+3]_28 chr6:80247163-80247243 0.00023 4_[+3]_68 chr19:4472049-4472129 0.00024 2_[+3]_70 chr12:49259699-49259779 0.00024 29_[+3]_43 chr1:38397543-38397623 0.00024 5_[+3]_67 chr19:50372892-50372972 0.00024 18_[+3]_54 chr10:101190514-10119059 0.00029 22_[+3]_50 chr5:32313306-32313386 0.00029 38_[+3]_34 chr17:61627656-61627736 0.00033 19_[+3]_53 chr9:133588119-133588199 0.00033 72_[+3] chr17:43697610-43697690 0.00033 30_[+3]_42 chr15:69113274-69113354 0.00033 50_[+3]_22 chr20:56004776-56004856 0.00033 63_[+3]_9 chr16:50059012-50059092 0.00035 19_[+3]_53 chr19:17420228-17420308 0.00035 40_[+3]_32 chr5:172484176-172484256 0.00035 10_[+3]_62 chr16:30382049-30382129 0.00035 6_[+3]_66 chr12:113658963-11365904 0.00035 35_[+3]_37 chr1:207996127-207996207 0.00035 69_[+3]_3 chr16:57769274-57769354 0.00037 14_[+3]_58 chr6:32146053-32146133 0.00046 62_[+3]_10 chr19:36248882-36248962 0.00046 44_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAATCRS width=8 seqs=71 chr20:47342213-47342293 ( 72) CCAATCAG 1 chr1:23694886-23694966 ( 38) CCAATCAG 1 chr6:31820460-31820540 ( 60) CCAATCAG 1 chr16:90143767-90143847 ( 13) CCAATCAG 1 chrX:48958180-48958260 ( 65) CCAATCAG 1 chr19:37262385-37262465 ( 43) CCAATCAG 1 chr19:2841352-2841432 ( 28) CCAATCAG 1 chr8:142583628-142583708 ( 73) CCAATCAG 1 chr7:1211245-1211325 ( 18) CCAATCAG 1 chr10:73896106-73896186 ( 44) CCAATCAG 1 chr17:30058820-30058900 ( 25) CCAATCAG 1 chr6:6657793-6657873 ( 31) CCAATCAG 1 chr12:53473210-53473290 ( 17) CCAATCAG 1 chr17:1016166-1016246 ( 68) CCAATCAG 1 chr10:74869180-74869260 ( 18) CCAATCAG 1 chr1:8958551-8958631 ( 42) CCAATCAG 1 chr15:67539066-67539146 ( 59) CCAATCAG 1 chr9:34989514-34989594 ( 19) CCAATCAC 1 chr14:21737679-21737759 ( 37) CCAATCAC 1 chr16:50775833-50775913 ( 38) CCAATCAC 1 chr11:4629535-4629615 ( 14) CCAATCAC 1 chr11:64140524-64140604 ( 13) CCAATCAC 1 chr19:19174643-19174723 ( 68) CCAATCAC 1 chr11:64902505-64902585 ( 63) CCAATAAG 1 chr17:73452603-73452683 ( 9) CCAATAAG 1 chr12:2999936-3000016 ( 20) CCAATGAG 1 chr19:55678040-55678120 ( 5) CCAATGAG 1 chr19:40728023-40728103 ( 72) CCAATGAG 1 chr13:20532735-20532815 ( 69) CCAATGAG 1 chr19:3344283-3344363 ( 70) CCAATGAG 1 chr16:67217563-67217643 ( 57) CCAATAAG 1 chr7:154720061-154720141 ( 45) CCAATGAG 1 chr12:109535787-10953586 ( 45) CCAATCCG 1 chr19:50269790-50269870 ( 40) CCAATCCG 1 chr19:9945865-9945945 ( 11) CCAATCCG 1 chrX:47420506-47420586 ( 46) CCAATAAC 1 chr19:54641284-54641364 ( 25) CCAATCCG 1 chr19:41082684-41082764 ( 13) CCAATCGC 1 chr1:167691121-167691201 ( 22) CCAATCGC 1 chr16:22385987-22386067 ( 2) CCAATCGC 1 chr17:79980928-79981008 ( 6) CCAATGAA 1 chr3:152879079-152879159 ( 30) CCAATGAA 1 chr3:88108224-88108304 ( 67) CCAATAAA 1 chr1:120838606-120838686 ( 51) CCAATAAA 1 chr19:36505164-36505244 ( 6) CCAATGGG 1 chr7:130080869-130080949 ( 71) CCAATGGG 1 chr19:46148903-46148983 ( 51) CCAATAGG 1 chr9:80911918-80911998 ( 10) CCAATGGG 1 chr2:73298514-73298594 ( 12) CCAATAGG 1 chr3:126422988-126423068 ( 45) CCAATAGG 1 chr6:80247163-80247243 ( 5) CCAATCAT 1 chr19:4472049-4472129 ( 3) CCAATCCC 1 chr12:49259699-49259779 ( 30) CCAATCCC 1 chr1:38397543-38397623 ( 6) CCAATCCC 1 chr19:50372892-50372972 ( 19) CCAATCCC 1 chr10:101190514-10119059 ( 23) CCAATCCA 1 chr5:32313306-32313386 ( 39) CCAATCCA 1 chr17:61627656-61627736 ( 20) CCAATAGC 1 chr9:133588119-133588199 ( 73) CCAATGGC 1 chr17:43697610-43697690 ( 31) CCAATGGC 1 chr15:69113274-69113354 ( 51) CCAATGGC 1 chr20:56004776-56004856 ( 64) CCAATAGC 1 chr16:50059012-50059092 ( 20) CCAATAGA 1 chr19:17420228-17420308 ( 41) CCAATGGA 1 chr5:172484176-172484256 ( 11) CCAATGGA 1 chr16:30382049-30382129 ( 7) CCAATAGA 1 chr12:113658963-11365904 ( 36) CCAATGGA 1 chr1:207996127-207996207 ( 70) CCAATGGA 1 chr16:57769274-57769354 ( 15) CCAATAAT 1 chr6:32146053-32146133 ( 63) CCAATCCT 1 chr19:36248882-36248962 ( 45) CCAATCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.39859 E= 2.7e-032 -1279 181 -1279 -1279 -1279 181 -1279 -1279 221 -1279 -1279 -1279 221 -1279 -1279 -1279 -1279 -1279 -1279 221 -13 94 -15 -1279 135 -76 0 -1279 -35 -9 85 -194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 2.7e-032 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.197183 0.549296 0.253521 0.000000 0.549296 0.169014 0.281690 0.000000 0.169014 0.267606 0.507042 0.056338 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATCRS MEME-3 regular expression -------------------------------------------------------------------------------- CCAAT[CG][AG][GC] -------------------------------------------------------------------------------- Time 11.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTARA MEME-4 width = 8 sites = 19 llr = 196 E-value = 6.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::94a pos.-specific C :::a:::: probability G 1:a::16: matrix T 9:::a::: bits 2.2 * * * 2.0 * ** * 1.8 ****** * 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTAGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:36417109-36417189 38 1.08e-05 tacaaacctt tagctaga cacagagcgc chr19:39559095-39559175 54 1.08e-05 tacaatcctt tagctaga cacagagtgc chr16:69463286-69463366 51 1.08e-05 tacaatcctt tagctaga cacagagtgc chr4:142253923-142254003 5 1.08e-05 agag tagctaga tacagagtgt chr17:72902618-72902698 6 1.08e-05 tagat tagctaga cacagagcac chr7:158655932-158656012 17 1.08e-05 tacaaacctt tagctaga cgcagagcgc chr2:108363515-108363595 38 1.08e-05 cccaccagag tagctaga tacagagtgt chr19:33184533-33184613 33 1.08e-05 tacaaatctt tagctaga cagagcactg chr19:8444201-8444281 60 1.91e-05 attttctgtc tagctaaa ggattgtaaa chr6:28833996-28834076 20 1.91e-05 cccaccagag tagctaaa tacagagtgt chr5:138882652-138882732 40 1.91e-05 gcgctctgtc tagctaaa ggtttgtaaa chr10:73896106-73896186 22 1.91e-05 gctctgtgtc tagctaaa ggattgtaaa chr17:30058820-30058900 69 1.91e-05 actctgtatc tagctaaa ggtt chr10:74869180-74869260 62 1.91e-05 gctctgtgtc tagctaaa ggattgtaaa chr1:8958551-8958631 20 1.91e-05 cactcttgtc tagctaaa ggattataaa chr15:67539066-67539146 12 1.91e-05 actctgtgtc tagctaaa ggattgtaaa chr6:140469029-140469109 25 3.31e-05 tacaaacctt gagctaga cacagagtgc chr17:4870663-4870743 10 3.31e-05 ATCGAAATA GAGCTAGA GGTGAGCGGG chr19:17420228-17420308 28 5.79e-05 GCGCATGAGT TAGCTGGA TGCGGCCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:36417109-36417189 1.1e-05 37_[+4]_35 chr19:39559095-39559175 1.1e-05 53_[+4]_19 chr16:69463286-69463366 1.1e-05 50_[+4]_22 chr4:142253923-142254003 1.1e-05 4_[+4]_68 chr17:72902618-72902698 1.1e-05 5_[+4]_67 chr7:158655932-158656012 1.1e-05 16_[+4]_56 chr2:108363515-108363595 1.1e-05 37_[+4]_35 chr19:33184533-33184613 1.1e-05 32_[+4]_40 chr19:8444201-8444281 1.9e-05 59_[+4]_13 chr6:28833996-28834076 1.9e-05 19_[+4]_53 chr5:138882652-138882732 1.9e-05 39_[+4]_33 chr10:73896106-73896186 1.9e-05 21_[+4]_51 chr17:30058820-30058900 1.9e-05 68_[+4]_4 chr10:74869180-74869260 1.9e-05 61_[+4]_11 chr1:8958551-8958631 1.9e-05 19_[+4]_53 chr15:67539066-67539146 1.9e-05 11_[+4]_61 chr6:140469029-140469109 3.3e-05 24_[+4]_48 chr17:4870663-4870743 3.3e-05 9_[+4]_63 chr19:17420228-17420308 5.8e-05 27_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTARA width=8 seqs=19 chr6:36417109-36417189 ( 38) TAGCTAGA 1 chr19:39559095-39559175 ( 54) TAGCTAGA 1 chr16:69463286-69463366 ( 51) TAGCTAGA 1 chr4:142253923-142254003 ( 5) TAGCTAGA 1 chr17:72902618-72902698 ( 6) TAGCTAGA 1 chr7:158655932-158656012 ( 17) TAGCTAGA 1 chr2:108363515-108363595 ( 38) TAGCTAGA 1 chr19:33184533-33184613 ( 33) TAGCTAGA 1 chr19:8444201-8444281 ( 60) TAGCTAAA 1 chr6:28833996-28834076 ( 20) TAGCTAAA 1 chr5:138882652-138882732 ( 40) TAGCTAAA 1 chr10:73896106-73896186 ( 22) TAGCTAAA 1 chr17:30058820-30058900 ( 69) TAGCTAAA 1 chr10:74869180-74869260 ( 62) TAGCTAAA 1 chr1:8958551-8958631 ( 20) TAGCTAAA 1 chr15:67539066-67539146 ( 12) TAGCTAAA 1 chr6:140469029-140469109 ( 25) GAGCTAGA 1 chr17:4870663-4870743 ( 10) GAGCTAGA 1 chr19:17420228-17420308 ( 28) TAGCTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 6.9e-008 -1089 -1089 -142 204 221 -1089 -1089 -1089 -1089 -1089 183 -1089 -1089 181 -1089 -1089 -1089 -1089 -1089 220 213 -1089 -242 -1089 96 -1089 104 -1089 221 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.9e-008 0.000000 0.000000 0.105263 0.894737 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.947368 0.000000 0.052632 0.000000 0.421053 0.000000 0.578947 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTARA MEME-4 regular expression -------------------------------------------------------------------------------- TAGCTA[GA]A -------------------------------------------------------------------------------- Time 14.37 secs. ******************************************************************************** ******************************************************************************** MOTIF ACAGAGTG MEME-5 width = 8 sites = 18 llr = 174 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a18:91:: pos.-specific C :9:::::1 probability G :::a19:9 matrix T ::2:1:a: bits 2.2 * * 2.0 * * 1.8 * * * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGAGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:36417109-36417189 6 1.40e-05 ttttt acagagtg ctgattggtg chr19:39559095-39559175 63 1.40e-05 ttagctagac acagagtg ctgattggtg chr16:69463286-69463366 19 1.40e-05 gtccattttt acagagtg ctgattggtg chr6:28833996-28834076 29 1.40e-05 gtagctaaat acagagtg tccattggtg chr15:83738182-83738262 47 1.40e-05 ggtccacttt acagagtg ctgattggtc chr19:46498560-46498640 58 1.40e-05 TGGGGGAGGG ACAGAGTG ATGGGCGTCT chr4:142253923-142254003 14 1.40e-05 gtagctagat acagagtg tccattggtg chr7:158655932-158656012 51 1.40e-05 gtccgttttt acagagtg ctgattggtg chr2:108363515-108363595 47 1.40e-05 gtagctagat acagagtg tcgattggtg chr19:33184533-33184613 1 1.40e-05 . acagagtg cggattggtg chr6:140469029-140469109 34 1.40e-05 tgagctagac acagagtg ctggttggtg chr1:150601645-150601725 53 2.81e-05 AGAGTACAGT ACTGAGTG ACAAACGACC chr21:45175153-45175233 44 2.81e-05 CTGAGGCATC ACTGAGTG ATGATTGGCT chr3:113415633-113415713 4 4.95e-05 AAG ACAGAATG CCGTTGCACT chr12:2999936-3000016 66 7.78e-05 GGCGGCGGCG ACAGTGTG GAACGCG chr8:25316003-25316083 45 7.78e-05 GCGTCACCGG ACAGAGTC CAGCCAATCA chr17:72902618-72902698 56 9.61e-05 cgagctagac acagggtg ctgattggtg chr1:153895554-153895634 43 1.18e-04 ACCCTTGAAG AATGAGTG GCCGGAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:36417109-36417189 1.4e-05 5_[+5]_67 chr19:39559095-39559175 1.4e-05 62_[+5]_10 chr16:69463286-69463366 1.4e-05 18_[+5]_54 chr6:28833996-28834076 1.4e-05 28_[+5]_44 chr15:83738182-83738262 1.4e-05 46_[+5]_26 chr19:46498560-46498640 1.4e-05 57_[+5]_15 chr4:142253923-142254003 1.4e-05 13_[+5]_59 chr7:158655932-158656012 1.4e-05 50_[+5]_22 chr2:108363515-108363595 1.4e-05 46_[+5]_26 chr19:33184533-33184613 1.4e-05 [+5]_72 chr6:140469029-140469109 1.4e-05 33_[+5]_39 chr1:150601645-150601725 2.8e-05 52_[+5]_20 chr21:45175153-45175233 2.8e-05 43_[+5]_29 chr3:113415633-113415713 4.9e-05 3_[+5]_69 chr12:2999936-3000016 7.8e-05 65_[+5]_7 chr8:25316003-25316083 7.8e-05 44_[+5]_28 chr17:72902618-72902698 9.6e-05 55_[+5]_17 chr1:153895554-153895634 0.00012 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAGAGTG width=8 seqs=18 chr6:36417109-36417189 ( 6) ACAGAGTG 1 chr19:39559095-39559175 ( 63) ACAGAGTG 1 chr16:69463286-69463366 ( 19) ACAGAGTG 1 chr6:28833996-28834076 ( 29) ACAGAGTG 1 chr15:83738182-83738262 ( 47) ACAGAGTG 1 chr19:46498560-46498640 ( 58) ACAGAGTG 1 chr4:142253923-142254003 ( 14) ACAGAGTG 1 chr7:158655932-158656012 ( 51) ACAGAGTG 1 chr2:108363515-108363595 ( 47) ACAGAGTG 1 chr19:33184533-33184613 ( 1) ACAGAGTG 1 chr6:140469029-140469109 ( 34) ACAGAGTG 1 chr1:150601645-150601725 ( 53) ACTGAGTG 1 chr21:45175153-45175233 ( 44) ACTGAGTG 1 chr3:113415633-113415713 ( 4) ACAGAATG 1 chr12:2999936-3000016 ( 66) ACAGTGTG 1 chr8:25316003-25316083 ( 45) ACAGAGTC 1 chr17:72902618-72902698 ( 56) ACAGGGTG 1 chr1:153895554-153895634 ( 43) AATGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 1.1e-001 221 -1081 -1081 -1081 -195 172 -1081 -1081 195 -1081 -1081 -38 -1081 -1081 183 -1081 204 -1081 -234 -196 -195 -1081 174 -1081 -1081 -1081 -1081 220 -1081 -236 174 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.1e-001 1.000000 0.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.055556 0.055556 0.055556 0.000000 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.944444 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAGTG MEME-5 regular expression -------------------------------------------------------------------------------- ACAGAGTG -------------------------------------------------------------------------------- Time 17.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:88355111-88355191 2.32e-02 80 chr1:206138158-206138238 3.57e-02 11_[+3(6.52e-05)]_61 chr20:56004776-56004856 2.09e-02 80 chr17:76237690-76237770 4.56e-04 15_[+2(1.42e-05)]_40_[+2(1.42e-05)]_\ 9 chr1:143913400-143913480 1.29e-02 80 chr15:67539066-67539146 7.82e-06 11_[+4(1.91e-05)]_14_[+3(1.44e-05)]_\ 17_[+3(1.44e-05)]_14 chr17:44302737-44302817 1.59e-02 80 chr15:69113274-69113354 4.89e-02 80 chr19:1790930-1791010 6.04e-05 29_[+2(2.49e-05)]_28_[+3(6.52e-05)]_\ 7 chr21:45175153-45175233 3.82e-04 11_[+5(2.81e-05)]_1_[+2(1.42e-05)]_\ 15_[+5(2.81e-05)]_1_[+2(1.42e-05)]_20 chr1:8958551-8958631 6.33e-06 1_[+3(1.44e-05)]_10_[+4(1.91e-05)]_\ 14_[+3(1.44e-05)]_17_[+1(2.52e-05)]_6 chr19:36193361-36193441 8.66e-05 [+3(1.44e-05)]_49_[+2(3.93e-05)]_15 chr4:48782457-48782537 4.78e-01 80 chr19:47322174-47322254 1.94e-04 1_[+2(2.49e-05)]_12_[+1(2.52e-05)]_\ 26_[+2(2.49e-05)]_17 chr22:40440648-40440728 1.26e-01 80 chr1:25757195-25757275 8.65e-03 10_[+2(1.42e-05)]_62 chr20:40247071-40247151 2.48e-02 80 chr19:2375515-2375595 5.26e-05 13_[+3(2.91e-05)]_26_[+2(1.42e-05)]_\ 25 chr3:107241702-107241782 4.69e-02 80 chr11:67275735-67275815 1.49e-02 7_[+2(9.39e-05)]_32_[+2(6.88e-05)]_\ 25 chr8:145159242-145159322 1.09e-02 56_[+5(2.81e-05)]_16 chr10:74869180-74869260 7.01e-06 17_[+3(1.44e-05)]_17_[+3(1.44e-05)]_\ 11_[+4(1.91e-05)]_11 chr6:159527919-159527999 1.75e-04 7_[+2(2.49e-05)]_27_[+1(1.43e-05)]_\ 30 chr1:120838376-120838456 5.58e-03 80 chr22:38054399-38054479 5.07e-02 80 chr7:8008269-8008349 4.27e-03 39_[+3(2.91e-05)]_33 chr19:13906047-13906127 6.70e-02 80 chr2:106468118-106468198 1.42e-03 22_[+2(1.42e-05)]_39_[+2(1.42e-05)]_\ 3 chr2:73460457-73460537 1.57e-03 72_[+2(1.42e-05)] chr16:22385987-22386067 9.78e-02 80 chr14:78083247-78083327 1.26e-02 80 chr3:126422988-126423068 6.55e-04 18_[+1(8.19e-05)]_54 chr17:43697610-43697690 1.98e-03 61_[+3(6.52e-05)]_11 chr2:74685413-74685493 1.84e-01 80 chr8:11660026-11660106 2.45e-05 9_[+3(6.52e-05)]_37_[+2(1.42e-05)]_\ 18 chr15:83478229-83478309 2.95e-02 14_[+2(6.88e-05)]_58 chr1:151254564-151254644 6.45e-03 19_[+3(6.52e-05)]_53 chr1:120838606-120838686 5.78e-04 4_[+1(1.43e-05)]_68 chr20:17662996-17663076 5.95e-02 80 chr6:160183397-160183477 2.24e-02 80 chr19:18315099-18315179 4.70e-04 36_[+3(1.44e-05)]_36 chr14:73925379-73925459 6.87e-01 80 chr19:54641284-54641364 6.08e-02 80 chr17:4870663-4870743 4.13e-05 9_[+4(3.31e-05)]_40_[+3(1.44e-05)]_\ 15 chr6:140469029-140469109 1.89e-05 24_[+4(3.31e-05)]_1_[+5(1.40e-05)]_\ 24_[+4(3.31e-05)]_7 chr17:1016166-1016246 3.48e-03 6_[+3(1.44e-05)]_23_[+3(1.44e-05)]_\ 22_[+3(1.44e-05)]_5 chr4:52709138-52709218 2.36e-02 80 chr12:53473210-53473290 3.41e-03 16_[+3(1.44e-05)]_32_[+1(6.32e-05)]_\ 16 chr17:39943156-39943236 2.68e-02 80 chr3:149530910-149530990 1.06e-02 58_[+3(6.52e-05)]_14 chr17:45177657-45177737 9.93e-03 27_[+2(3.93e-05)]_45 chr14:23755428-23755508 6.27e-02 80 chr14:104181853-10418193 1.41e-01 80 chrX:46988598-46988678 1.60e-01 80 chr10:99393255-99393335 7.74e-03 80 chr19:2945008-2945088 1.20e-02 80 chr19:33184533-33184613 2.75e-07 [+5(1.40e-05)]_24_[+4(1.08e-05)]_8_\ [+2(2.49e-05)]_24 chr14:21458014-21458094 5.45e-03 9_[+2(9.39e-05)]_63 chr2:108363515-108363595 2.03e-06 [+4(3.31e-05)]_29_[+4(1.08e-05)]_1_\ [+5(1.40e-05)]_1_[+2(9.39e-05)]_17 chr19:19174643-19174723 1.32e-04 21_[+3(1.44e-05)]_[+2(6.88e-05)]_30_\ [+3(2.91e-05)]_5 chr1:207996127-207996207 8.33e-05 29_[+3(1.44e-05)]_43 chr19:16162461-16162541 7.68e-03 21_[+2(2.49e-05)]_25_[+2(2.49e-05)]_\ 18 chr7:154720061-154720141 6.58e-03 3_[+3(6.52e-05)]_33_[+3(6.52e-05)]_\ 28 chr5:32313306-32313386 1.19e-02 80 chr6:80247163-80247243 2.64e-03 61_[+2(9.39e-05)]_11 chr19:36606263-36606343 9.28e-02 45_[+2(6.88e-05)]_27 chr6:6657793-6657873 1.57e-03 30_[+3(1.44e-05)]_33_[+3(1.44e-05)]_\ 1 chr19:30370076-30370156 1.24e-05 6_[+3(6.52e-05)]_28_[+2(2.49e-05)]_\ 30 chr8:71314370-71314450 1.43e-02 15_[+2(6.88e-05)]_33_[+2(6.88e-05)]_\ 16 chr19:50372892-50372972 4.38e-03 69_[+1(6.32e-05)]_3 chr17:80325881-80325961 3.31e-02 80 chr1:38397543-38397623 4.20e-02 80 chr18:14132491-14132571 3.12e-02 80 chr11:124981541-12498162 1.31e-02 80 chr19:1041089-1041169 9.42e-05 25_[+3(1.44e-05)]_47 chr3:114866187-114866267 8.37e-03 32_[+3(6.52e-05)]_40 chr17:30058820-30058900 4.01e-05 24_[+3(1.44e-05)]_17_[+3(1.44e-05)]_\ 11_[+4(1.91e-05)]_4 chr21:39488062-39488142 9.36e-01 80 chrX:47415610-47415690 1.89e-01 80 chr17:74667893-74667973 1.30e-03 80 chr1:167691121-167691201 1.17e-03 52_[+3(6.52e-05)]_20 chr8:25316003-25316083 1.25e-04 44_[+5(7.78e-05)]_3_[+3(1.44e-05)]_\ 17 chr10:73896106-73896186 7.82e-06 2_[+3(1.44e-05)]_11_[+4(1.91e-05)]_\ 14_[+3(1.44e-05)]_17_[+3(1.44e-05)]_4 chr9:35072925-35073005 2.05e-02 18_[+2(3.93e-05)]_54 chr19:45394309-45394389 2.81e-01 80 chr22:35696150-35696230 1.70e-01 80 chr7:1211245-1211325 1.79e-03 17_[+3(1.44e-05)]_16_[+3(1.44e-05)]_\ 16_[+3(1.44e-05)]_7 chr19:14228650-14228730 4.94e-01 80 chr6:82957480-82957560 1.12e-02 59_[+2(1.42e-05)]_13 chr9:37465717-37465797 2.17e-02 54_[+3(6.52e-05)]_18 chr1:153895554-153895634 8.84e-04 63_[+2(1.42e-05)]_9 chr7:158655932-158656012 3.28e-07 16_[+4(1.08e-05)]_10_[+2(2.49e-05)]_\ 8_[+5(1.40e-05)]_1_[+2(2.49e-05)]_13 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chr6:36417109-36417189 3.28e-07 5_[+5(1.40e-05)]_1_[+2(2.49e-05)]_\ 15_[+4(1.08e-05)]_35 chr11:64902505-64902585 8.71e-06 36_[+2(2.49e-05)]_18_[+3(6.52e-05)]_\ 10 chr9:34989514-34989594 1.36e-04 3_[+3(1.44e-05)]_7_[+3(2.91e-05)]_\ 54 chr19:18303777-18303857 1.15e-02 33_[+1(8.19e-05)]_39 chr13:20437832-20437912 1.85e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************