******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ARNT.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:120678031-120678111 1.0000 80 chr17:33380379-33380459 1.0000 80 chr4:25308433-25308513 1.0000 80 chr20:56041195-56041275 1.0000 80 chr10:75823154-75823234 1.0000 80 chr11:47299814-47299894 1.0000 80 chr19:49253004-49253084 1.0000 80 chr1:36253278-36253358 1.0000 80 chr22:50179861-50179941 1.0000 80 chr11:134665575-13466565 1.0000 80 chr16:81131374-81131454 1.0000 80 chr17:17640039-17640119 1.0000 80 chr8:27220303-27220383 1.0000 80 chr3:50687594-50687674 1.0000 80 chr12:124710428-12471050 1.0000 80 chr3:186254753-186254833 1.0000 80 chr2:238349549-238349629 1.0000 80 chr3:81793638-81793718 1.0000 80 chr12:53038947-53039027 1.0000 80 chr6:168105079-168105159 1.0000 80 chr1:39255596-39255676 1.0000 80 chr3:13620701-13620781 1.0000 80 chr1:7907851-7907931 1.0000 80 chr10:11648181-11648261 1.0000 80 chr15:90708982-90709062 1.0000 80 chr19:49253212-49253292 1.0000 80 chr9:90427868-90427948 1.0000 80 chr8:41892987-41893067 1.0000 80 chr20:60841496-60841576 1.0000 80 chr6:16891448-16891528 1.0000 80 chr1:924402-924482 1.0000 80 chr11:4913374-4913454 1.0000 80 chr1:224007769-224007849 1.0000 80 chr21:40554840-40554920 1.0000 80 chr13:60042684-60042764 1.0000 80 chr12:7014757-7014837 1.0000 80 chr2:10447750-10447830 1.0000 80 chr8:37447905-37447985 1.0000 80 chr19:49471746-49471826 1.0000 80 chr11:44799926-44800006 1.0000 80 chr1:78470510-78470590 1.0000 80 chrX:38499155-38499235 1.0000 80 chr1:78227876-78227956 1.0000 80 chr15:63683965-63684045 1.0000 80 chr11:65187591-65187671 1.0000 80 chr2:10548554-10548634 1.0000 80 chr15:85590512-85590592 1.0000 80 chrX:48448266-48448346 1.0000 80 chr17:14209308-14209388 1.0000 80 chr9:135983533-135983613 1.0000 80 chr16:55787014-55787094 1.0000 80 chr13:113808827-11380890 1.0000 80 chr11:46262585-46262665 1.0000 80 chr19:51337194-51337274 1.0000 80 chr16:87887254-87887334 1.0000 80 chr1:101281805-101281885 1.0000 80 chr19:55695243-55695323 1.0000 80 chr2:75937559-75937639 1.0000 80 chr7:8857229-8857309 1.0000 80 chr5:130709146-130709226 1.0000 80 chr19:6829106-6829186 1.0000 80 chr6:151007102-151007182 1.0000 80 chr6:36087142-36087222 1.0000 80 chr3:71545412-71545492 1.0000 80 chr7:106741441-106741521 1.0000 80 chr7:50423950-50424030 1.0000 80 chr5:149012131-149012211 1.0000 80 chr8:77912272-77912352 1.0000 80 chr13:31736085-31736165 1.0000 80 chr19:48167548-48167628 1.0000 80 chr19:5165016-5165096 1.0000 80 chr1:182365873-182365953 1.0000 80 chr3:196249716-196249796 1.0000 80 chr22:25103486-25103566 1.0000 80 chr10:3710586-3710666 1.0000 80 chr9:75764530-75764610 1.0000 80 chr10:134893-134973 1.0000 80 chr12:1704512-1704592 1.0000 80 chrX:154564016-154564096 1.0000 80 chr1:149982914-149982994 1.0000 80 chr8:85980999-85981079 1.0000 80 chr1:118153842-118153922 1.0000 80 chr9:19748928-19749008 1.0000 80 chr9:135199959-135200039 1.0000 80 chr10:97026505-97026585 1.0000 80 chr14:25517614-25517694 1.0000 80 chr13:41538247-41538327 1.0000 80 chr18:75707713-75707793 1.0000 80 chr10:18871877-18871957 1.0000 80 chr9:138693061-138693141 1.0000 80 chr12:76175487-76175567 1.0000 80 chr19:6601755-6601835 1.0000 80 chr20:30586168-30586248 1.0000 80 chr1:202928266-202928346 1.0000 80 chr3:44564094-44564174 1.0000 80 chr12:9950745-9950825 1.0000 80 chr13:31735054-31735134 1.0000 80 chr20:45802647-45802727 1.0000 80 chr3:136618697-136618777 1.0000 80 chr12:125596082-12559616 1.0000 80 chr5:43212747-43212827 1.0000 80 chr5:34924199-34924279 1.0000 80 chr21:35406857-35406937 1.0000 80 chr1:68368599-68368679 1.0000 80 chr4:87932900-87932980 1.0000 80 chr7:100861310-100861390 1.0000 80 chr19:21776007-21776087 1.0000 80 chr8:61975112-61975192 1.0000 80 chr1:44020243-44020323 1.0000 80 chr3:69261654-69261734 1.0000 80 chr3:98312644-98312724 1.0000 80 chr3:185694808-185694888 1.0000 80 chr11:46258838-46258918 1.0000 80 chr1:118107537-118107617 1.0000 80 chr16:81130442-81130522 1.0000 80 chr1:62978843-62978923 1.0000 80 chr19:3262526-3262606 1.0000 80 chr5:39399717-39399797 1.0000 80 chr3:130569239-130569319 1.0000 80 chr11:107272053-10727213 1.0000 80 chr10:4983870-4983950 1.0000 80 chr11:94877593-94877673 1.0000 80 chr9:93578118-93578198 1.0000 80 chr12:30685309-30685389 1.0000 80 chr1:41575469-41575549 1.0000 80 chr11:117689075-11768915 1.0000 80 chr14:31500865-31500945 1.0000 80 chr17:32258287-32258367 1.0000 80 chr19:51338514-51338594 1.0000 80 chr1:65432472-65432552 1.0000 80 chr4:186317584-186317664 1.0000 80 chr6:44215506-44215586 1.0000 80 chr10:74147067-74147147 1.0000 80 chr6:35311680-35311760 1.0000 80 chr9:108438690-108438770 1.0000 80 chr11:63953494-63953574 1.0000 80 chr11:134665775-13466585 1.0000 80 chr20:23094860-23094940 1.0000 80 chr11:65261302-65261382 1.0000 80 chr1:110089041-110089121 1.0000 80 chr1:26827789-26827869 1.0000 80 chr1:229887602-229887682 1.0000 80 chr4:80131611-80131691 1.0000 80 chr1:113760546-113760626 1.0000 80 chr20:44547097-44547177 1.0000 80 chr5:96519118-96519198 1.0000 80 chr9:119079944-119080024 1.0000 80 chr3:81792709-81792789 1.0000 80 chr18:57528452-57528532 1.0000 80 chr1:193091539-193091619 1.0000 80 chr1:54520094-54520174 1.0000 80 chr1:46764151-46764231 1.0000 80 chr9:78977695-78977775 1.0000 80 chr20:17891652-17891732 1.0000 80 chr6:10402029-10402109 1.0000 80 chr6:38764397-38764477 1.0000 80 chr10:4053748-4053828 1.0000 80 chr17:56494867-56494947 1.0000 80 chr16:1325112-1325192 1.0000 80 chr10:25351525-25351605 1.0000 80 chr19:14638405-14638485 1.0000 80 chr17:60758910-60758990 1.0000 80 chr20:30944942-30945022 1.0000 80 chr6:28675741-28675821 1.0000 80 chr22:27031230-27031310 1.0000 80 chr12:122521123-12252120 1.0000 80 chr17:46438276-46438356 1.0000 80 chr7:101861028-101861108 1.0000 80 chr5:138883640-138883720 1.0000 80 chr19:46706546-46706626 1.0000 80 chr3:65486218-65486298 1.0000 80 chr17:80416051-80416131 1.0000 80 chr3:87845663-87845743 1.0000 80 chr1:156711242-156711322 1.0000 80 chr15:60973741-60973821 1.0000 80 chr3:129118395-129118475 1.0000 80 chr1:19786363-19786443 1.0000 80 chr1:11990009-11990089 1.0000 80 chr7:106742727-106742807 1.0000 80 chr1:202928468-202928548 1.0000 80 chr4:109571564-109571644 1.0000 80 chr5:124060898-124060978 1.0000 80 chr1:113369030-113369110 1.0000 80 chr16:1325324-1325404 1.0000 80 chr9:114951319-114951399 1.0000 80 chr11:65464774-65464854 1.0000 80 chr3:61237478-61237558 1.0000 80 chr8:38708619-38708699 1.0000 80 chr15:31555671-31555751 1.0000 80 chr3:167791999-167792079 1.0000 80 chr1:12040043-12040123 1.0000 80 chr1:100274359-100274439 1.0000 80 chr6:119578331-119578411 1.0000 80 chr1:160548321-160548401 1.0000 80 chr17:75424504-75424584 1.0000 80 chr6:143386312-143386392 1.0000 80 chr3:37270287-37270367 1.0000 80 chr5:149522472-149522552 1.0000 80 chr19:14765757-14765837 1.0000 80 chr7:106183114-106183194 1.0000 80 chr15:93352383-93352463 1.0000 80 chr19:597604-597684 1.0000 80 chr6:120061063-120061143 1.0000 80 chr7:101557356-101557436 1.0000 80 chr12:112677905-11267798 1.0000 80 chr16:15670519-15670599 1.0000 80 chr15:84132006-84132086 1.0000 80 chr7:111126716-111126796 1.0000 80 chr16:77792570-77792650 1.0000 80 chr3:38206446-38206526 1.0000 80 chr1:25022085-25022165 1.0000 80 chr7:51444370-51444450 1.0000 80 chr9:131953632-131953712 1.0000 80 chr3:170541493-170541573 1.0000 80 chr5:173345015-173345095 1.0000 80 chr6:2846699-2846779 1.0000 80 chr2:174219402-174219482 1.0000 80 chr1:183447291-183447371 1.0000 80 chr1:28994888-28994968 1.0000 80 chr1:181998334-181998414 1.0000 80 chr4:88343793-88343873 1.0000 80 chr3:43728355-43728435 1.0000 80 chr2:198364744-198364824 1.0000 80 chr19:18100397-18100477 1.0000 80 chr10:121643893-12164397 1.0000 80 chr2:62531968-62532048 1.0000 80 chr1:161067459-161067539 1.0000 80 chr6:28948723-28948803 1.0000 80 chr11:107711672-10771175 1.0000 80 chr5:162853367-162853447 1.0000 80 chr18:55454660-55454740 1.0000 80 chr14:31699049-31699129 1.0000 80 chr11:98420489-98420569 1.0000 80 chr3:16346233-16346313 1.0000 80 chr9:19161823-19161903 1.0000 80 chr2:169907464-169907544 1.0000 80 chr10:51563638-51563718 1.0000 80 chr11:71423576-71423656 1.0000 80 chr3:196254730-196254810 1.0000 80 chr20:57596238-57596318 1.0000 80 chr2:26578497-26578577 1.0000 80 chr7:139676996-139677076 1.0000 80 chr16:87808691-87808771 1.0000 80 chr1:150135522-150135602 1.0000 80 chr12:122186858-12218693 1.0000 80 chr12:50956908-50956988 1.0000 80 chr1:109757538-109757618 1.0000 80 chr2:197265054-197265134 1.0000 80 chr2:86221340-86221420 1.0000 80 chr3:130611745-130611825 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ARNT/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ARNT.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.223 G 0.238 T 0.265 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.223 G 0.238 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YTCTRGAR MEME-1 width = 8 sites = 190 llr = 1472 E-value = 4.7e-203 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::7:a5 pos.-specific C 3:a2:::: probability G ::::3a:3 matrix T 6a:8:::1 bits 2.2 * * 2.0 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 ****** (11.2 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTAGAA consensus C CG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:181998334-181998414 20 2.03e-05 ctctagagtc ttctagaa tctgacttcc chr1:183447291-183447371 45 2.03e-05 ATCCTGAAGC TTCTAGAA GTCTTAGAGC chr7:106742727-106742807 69 2.03e-05 cccacccctt ttctagaa agtt chr15:60973741-60973821 13 2.03e-05 TTCCGGAATA TTCTAGAA CATAGTATTC chr10:4053748-4053828 20 2.03e-05 ATTTCATAAA Ttctagaa tctatgattc chr20:17891652-17891732 69 2.03e-05 tccacccttt ttctagaa aatt chr20:44547097-44547177 67 2.03e-05 TTCTGCCTTT TTCTAGAA CAAATg chr1:229887602-229887682 57 2.03e-05 TAGAATAATA TTCTAGAA CAACCTAGAA chr19:51338514-51338594 9 2.03e-05 CCTGGAAT TTCTAGAA TATCAGACTT chr14:31500865-31500945 4 2.03e-05 AGC TTCTAGAA TCTTGTCCTC chr11:117689075-11768915 49 2.03e-05 GTATGGAACA TTCTAGAA CATTCTAGAA chr11:107272053-10727213 11 2.03e-05 tccagaaagc ttctagaa ctgataaaag chr12:76175487-76175567 67 2.03e-05 cttttctcaa ttctagaa tggggt chr12:1704512-1704592 36 2.03e-05 CCAGTCGGTG TTCTAGAA ATTTCTAGAA chr9:75764530-75764610 44 2.03e-05 AATCATCATC TTCTAGAA ACAGCAAGAG chr7:50423950-50424030 15 2.03e-05 CAGAATGGCC TTCTAGAA CTATCAGGAA chr3:71545412-71545492 35 2.03e-05 GATAAGAGCT TTCTAGAA GAATTCATTA chr6:36087142-36087222 44 2.03e-05 ttctaggtaa ttctagaa ctttctagaa chr6:151007102-151007182 48 2.03e-05 GGCCAAGGGA TTCTAGAA CTTTCTAGAG chrX:38499155-38499235 52 2.03e-05 TTCTGGATTC TTCTAGAA AACTCAGCCA chr1:78470510-78470590 15 2.03e-05 GCATTTGCTG TTCTAGAA AGTACAGAGA chr11:4913374-4913454 40 2.03e-05 GTCATTCCTC TTCTAGAA GACCTGGGCT chr9:90427868-90427948 21 2.03e-05 AATCCATTGT TTCTAGAA AACAAATACT chr19:49253212-49253292 40 2.03e-05 GTTTTGCTAG TTCTAGAA TATTCAGACA chr3:13620701-13620781 66 2.03e-05 Ctctagaaac ttctagaa tacgcaa chr4:25308433-25308513 22 2.03e-05 CTCTAGAAGC TTCTAGAA Gcctttagct chr7:120678031-120678111 44 2.03e-05 cgtttaccag ttctagaa tctttctgga chr19:18100397-18100477 38 3.80e-05 TTCCAGAAGT TTCTAGAG GTTTCTGGAA chr1:202928468-202928548 43 3.80e-05 actagtgcca ttctagag gcagagaaag chr1:156711242-156711322 70 3.80e-05 CCGGTAGGCT TTCTAGAG GAA chr3:87845663-87845743 23 3.80e-05 gagaaaagag ttctagag cagtccaaaa chr1:26827789-26827869 54 3.80e-05 GCGATGGTTT TTCTAGAG ACGGGCTGAT chr11:65261302-65261382 2 3.80e-05 T TTCTAGAG AGCTCTAGAA chr11:134665775-13466585 23 3.80e-05 GAGTATTATC TTCTAGAG GGGGAGTATT chr12:30685309-30685389 38 3.80e-05 GTCCTCAACT TTCTAGAG CTCTCTGTTG chr9:93578118-93578198 59 3.80e-05 TTCTAGATAA TTCTAGAG CAACTGCTTC chr1:62978843-62978923 13 3.80e-05 CATAAGGACT TTCTAGAG AAAGTTTTCT chr20:30586168-30586248 54 3.80e-05 CTAGATTGAG TTCTAGAG TGCTAGGCTG chr13:41538247-41538327 67 3.80e-05 CTACAATTCC TTCTAGAG AACTGC chr5:130709146-130709226 21 3.80e-05 gcaggtcctt ttctagag agcctactgc chr15:85590512-85590592 19 3.80e-05 CAGTCCTCTT TTCTAGAG CAGTCAGGAA chr1:78227876-78227956 21 3.80e-05 TGGAGTAGAA TTCTAGAG GGTGTGTGGA chr1:924402-924482 32 3.80e-05 GGTTGATTGT TTCTAGAG TTTGGGGTTG chr10:75823154-75823234 57 3.80e-05 cttttccagc ttctagag gctgcctgct chr20:56041195-56041275 50 3.80e-05 tctggagcct ttctagag ccCTTCAAGc chr2:86221340-86221420 67 5.51e-05 CCCCTGGGCC CTCTAGAA AAACTA chr16:1325324-1325404 5 5.51e-05 CACA CTCTAGAA AAGGGAGGCA chr20:30944942-30945022 20 5.51e-05 TCCGGACGGA CTCTAGAA ATGTTTCTGG chr16:1325112-1325192 25 5.51e-05 CCCCCACACA CTCTAGAA AAGGGAGGCG chr1:46764151-46764231 18 5.51e-05 CAAATGGAAC CTCTAGAA GCTAATCTAG chr9:119079944-119080024 21 5.51e-05 CAACATACTG CTCTAGAA CTGACAATGC chr5:34924199-34924279 64 5.51e-05 GAGGAGGTGA CTCTAGAA ATCTTGAAG chr20:45802647-45802727 38 5.51e-05 TTCTGGAGTT CTCTAGAA CAGAGGTTTT chr14:25517614-25517694 24 5.51e-05 gtctgtctga ctctaGAA CTGTGTAGTG chr10:134893-134973 25 5.51e-05 TGGACAGGCT CTCTAGAA GGTAGACAGG chr15:63683965-63684045 10 5.51e-05 AGTGACTTC CTCTAGAA GTTCAGGGAA chr8:37447905-37447985 69 5.51e-05 TATGGAGCAC CTCTAGAA ATGT chr8:41892987-41893067 15 5.51e-05 ctagataact ctctagaa aacagtaaga chr12:124710428-12471050 25 5.51e-05 CAGCACCCTC CTCTAGAA ATACAATCTA chr3:50687594-50687674 30 5.51e-05 ATCTAGAAGT CTCTAGAA GAAAAAGCAG chr12:122521123-12252120 68 7.27e-05 GATAAGCAGT TTCTGGAA AATAG chr1:113760546-113760626 37 7.27e-05 cagcaggcac ttctggaa ctctctctcg chr20:23094860-23094940 40 7.27e-05 CTAGAAGCTG TTCTGGAA GCCGCTGACT chr6:44215506-44215586 9 7.27e-05 GGAGCAGG TTCTGGAA GATTCATGGG chr16:81130442-81130522 62 7.27e-05 acacaaaggt ttctggaa taaggtggag chr3:185694808-185694888 65 7.27e-05 ATTTTTTTTT TTCTGGAA AACCAGTG chr18:75707713-75707793 50 7.27e-05 AGAAGGACAG TTCTGGAA AGGGGAACAG chr10:3710586-3710666 24 7.27e-05 TGAGTTGCTT TTCTGGAA TGCGGAGAGT chr19:48167548-48167628 55 7.27e-05 tcacacaatt ttctggaa ggacactgtg chr7:106741441-106741521 12 7.27e-05 gactgctttt ttctggaa tatgtatcac chr11:65187591-65187671 24 7.27e-05 TGCTGCTGTT TTCTGGAA CAACTTGTTT chr3:81793638-81793718 11 7.27e-05 TCATTTGCTT TTCTGGAA ACCTCTCCAG chr1:150135522-150135602 13 8.76e-05 CCCCAGCCTG CTCTAGAG CCACGCCATA chr16:15670519-15670599 46 8.76e-05 cctgctaagg ctctagag gagactcctt chr12:112677905-11267798 6 8.76e-05 AGAAA CTCTAGAG TATCTGGATg chr15:31555671-31555751 27 8.76e-05 CCCTCTCTTG CTCTAGAG AATCTGGCCT chr1:193091539-193091619 57 8.76e-05 GAAAGTTTCT CTCTAGAG CAGAAGTTGC chr12:125596082-12559616 38 8.76e-05 CTTGCTCGTT CTCTAGAG TTATCTTGAC chr9:19748928-19749008 39 8.76e-05 agttccttct ctctagag accttgaaGT chr1:36253278-36253358 13 8.76e-05 attaggtagc ctctagag ccctctatga chr12:122186858-12218693 39 1.03e-04 TGCCACCTTG TTCTGGAG AGAGAGAGCT chr3:16346233-16346313 47 1.03e-04 TGAGATTCTG TTCTGGAG CGGATGAGAG chr6:120061063-120061143 48 1.03e-04 ATAAGGCTGA TTCTGGAG AGAACTGAGC chr3:37270287-37270367 30 1.03e-04 CTCTGGAGTT TTCTGGAG GTTGAATCTG chr17:75424504-75424584 11 1.03e-04 CCTTGGTGCC TTCTGGAG CCTTTCAACT chr17:60758910-60758990 60 1.03e-04 CAGGCTTCTT TTCTGGAG CAGCAAGTGT chr1:54520094-54520174 58 1.03e-04 AGAAGAAAGA TTCTGGAG GAAAGGTTTA chr5:39399717-39399797 36 1.03e-04 CTGCAAGAGA TTCTGGAG CTTGCAACAT chr11:46258838-46258918 18 1.03e-04 acatcttgag ttctggag gatgagtaag chr1:44020243-44020323 23 1.03e-04 AATTTGGGTT TTCTGGAG GGCAGAGGGG chr1:68368599-68368679 49 1.03e-04 tctaggagct ttctggag aagtctttag chr3:136618697-136618777 55 1.03e-04 GATTTCTTCT TTCTGGAG ATTGTTCAAA chr9:138693061-138693141 36 1.03e-04 gctcccagct ttctggag actctccaga chr5:149012131-149012211 25 1.03e-04 AGGAAGCGGG TTCTGGAG GAGTCCAGAA chr16:87887254-87887334 56 1.03e-04 CCTAGCCGGC TTCTGGAG AGCTTTCTGG chr9:135983533-135983613 19 1.03e-04 CTGGATCCTG TTCTGGAG CTGGCTCTAG chr11:134665575-13466565 1 1.03e-04 . TTCTGGAG GAGGAGTATT chr2:197265054-197265134 56 1.35e-04 GCCTGCATAA CTCTGGAA AAGATATAGA chr20:57596238-57596318 69 1.35e-04 TTAGCTCTCA CTCTGGAA TCGT chr2:198364744-198364824 58 1.35e-04 TTCCAGAACT TTCCAGAA AATGCCGCGC chr1:118107537-118107617 36 1.35e-04 ctgaagttcc ttccagaa ctaacattTG chr3:69261654-69261734 26 1.35e-04 CTTTTCTAGA CTCTGGAA TGAACAAGCA chr13:31735054-31735134 33 1.35e-04 GCGACACAAG CTCTGGAA GCTTCCAGTT chr10:97026505-97026585 73 1.35e-04 TGACTGGTCT TTCCAGAA chr13:31736085-31736165 8 1.35e-04 CAGAACT TTCCAGAA TCTGCGGCAT chr8:77912272-77912352 5 1.35e-04 CATT CTCTGGAA AGCTTGTCTT chr7:8857229-8857309 22 1.35e-04 atccagattt ttccagaa aaactgccag chr11:46262585-46262665 66 1.35e-04 CAGAAATTTG CTCTGGAA ATTCAAT chr16:55787014-55787094 72 1.35e-04 AGGCTATAAG TTCCAGAA C chr11:44799926-44800006 52 1.35e-04 ttccagaatc ctctggaa aacaagctag chr22:50179861-50179941 25 1.35e-04 CCAGACACGC TTCCAGAA AAGAGTCGCT chr11:65464774-65464854 51 1.54e-04 CATTCCAGCT TTCTAGAT CGGAGACCCA chr22:27031230-27031310 31 1.54e-04 CTGTCAGACC TTCTAGAT CTGGATCTAG chr9:135199959-135200039 42 1.54e-04 gtcccctttg ttctagat catactagag chr13:60042684-60042764 36 1.54e-04 acccagcata ttctagat gcctgggaaa chr1:12040043-12040123 28 1.82e-04 CAAATCTGGA TTCCAGAG CTGGCAGAGG chr17:46438276-46438356 58 1.82e-04 GGCTCTCGAC CTCTGGAG ATAATGGGCT chr19:14638405-14638485 49 1.82e-04 CTTCAGAAGT TTCCAGAG CCAAATCTGG chr1:65432472-65432552 69 1.82e-04 CCCCTCCCAG CTCTGGAG CCCC chr1:41575469-41575549 68 1.82e-04 GCTCTGTTGG CTCTGGAG AACTG chr10:4983870-4983950 31 1.82e-04 CAGCAAGATT TTCCAGAG AAGGAGGTTG chr21:35406857-35406937 5 1.82e-04 GTAC TTCCAGAG TCTCAGCATG chrX:154564016-154564096 26 1.82e-04 GTGGGGGTGT TTCCAGAG AGGCTTCAAT chr2:10447750-10447830 11 1.82e-04 AGCTAGAAAT CTCTGGAG AGTTTTGGAG chr15:90708982-90709062 54 1.82e-04 TCGTTCAGCG CTCTGGAG TTTCCAGGCC chr19:49253004-49253084 47 1.82e-04 TGAATGCTTG CTCTGGAG CAATCATATG chr11:71423576-71423656 46 1.97e-04 aaaagatata ctccagaa ggtacaagaa chr11:98420489-98420569 25 1.97e-04 ctaaagactc ctccagaa agctcctaga chr5:162853367-162853447 36 1.97e-04 ctaaagacta ctccagaa agctgctaga chr9:114951319-114951399 56 1.97e-04 CCAGGGACCT CTCCAGAA AAGTCTAAAA chr6:35311680-35311760 13 1.97e-04 TAAGAGAATT CTCCAGAA GCTGTGCTCC chr22:25103486-25103566 50 1.97e-04 TGGTCAAAGG CTCCAGAA GCCAGCACAG chr3:196249716-196249796 32 1.97e-04 gtgtgggcta ctccagaa agaagaggtt chr1:101281805-101281885 19 1.97e-04 cctaagactc ctccagaa agctactaga chr13:113808827-11380890 1 1.97e-04 . CTCCAGAA GTCTCCCCGA chr2:10548554-10548634 23 1.97e-04 TCAGGAAGGC CTCCAGAA ATGAGCTCTA chr21:40554840-40554920 35 1.97e-04 tccagaaatg ctccagaa acgctccaga chr1:224007769-224007849 11 1.97e-04 ggaaaagcct ctccagaa ggagattaac chr10:11648181-11648261 36 1.97e-04 taaagaatct ctccagaa gacttatcta chr12:53038947-53039027 65 1.97e-04 CCGTATCTTC CTCCAGAA CCACCGCC chr2:238349549-238349629 21 1.97e-04 AATGACACAA CTCCAGAA ATGAGACAGC chr16:81131374-81131454 34 1.97e-04 ttcaagagtt ctccagaa aaggggcagg chr17:33380379-33380459 51 1.97e-04 GGCATTTTGA CTCCAGAA CTGCCCAAAG chr19:46706546-46706626 33 2.28e-04 gctccaggcc ctctagat gtatacgtgc chr6:2846699-2846779 22 2.58e-04 CAGCTTCATC CTCCAGAG GGCAGAATTC chr7:51444370-51444450 26 2.58e-04 GCAGGGTACA CTCCAGAG TCTCTAATGT chr16:77792570-77792650 45 2.58e-04 CTAGTCCTGG TTCTGGAT CTAGTCCTGG chr19:14765757-14765837 71 2.58e-04 GGACTTTTTG TTCTGGAT CT chr3:167791999-167792079 35 2.58e-04 gataagctgc ttctggat tcatgactct chr3:61237478-61237558 35 2.58e-04 CTCTGGATCT TTCTGGAT TCCTTAAGCC chr17:56494867-56494947 13 2.58e-04 AGAAAGACAA TTCTGGAT CAACTCCCTA chr4:80131611-80131691 3 2.58e-04 cc ttctggat gtgtacgtgt chr1:182365873-182365953 22 2.58e-04 AGGGTATGTT TTCTGGAT GCTTGGGCAA chr2:75937559-75937639 26 2.58e-04 GGATAAGTCT TTCTGGAT AAGACTCAGC chr19:55695243-55695323 62 2.58e-04 ctagatatGC TTCTGGAT ATGCACACTA chr19:51337194-51337274 15 2.58e-04 CCGGATCTGG TTCTGGAT CTGGGTCTTG chr17:14209308-14209388 17 2.58e-04 ttctggacca ttctgGAT CACACTTCCT chr12:7014757-7014837 14 2.58e-04 GCTTATCTGA CTCCAGAG CTTTCAGGAG chr20:60841496-60841576 54 2.58e-04 CTGTGGCTCG TTCTGGAT CCGCAGTGAT chr17:17640039-17640119 45 2.58e-04 GATGAGGCTT TTCTGGAT TCTGAGCATT chr6:168105079-168105159 15 2.70e-04 CTCCTCCCAG TTCCGGAG AGACTCCTCC chr2:169907464-169907544 58 3.04e-04 cccaatttct atctagaa gcttcaggat chr18:55454660-55454740 17 3.04e-04 GAGGAGCTCC ATCTAGAA CACTGCGGGA chr1:160548321-160548401 57 3.04e-04 CTAGAAGTAG ATCTAGAA GTTCCAAACA chr8:27220303-27220383 12 3.04e-04 CCCACGTGAA ATCTAGAA CTTCTCCCAC chr7:101861028-101861108 3 3.35e-04 GG CTCTGGAT GGATGTGATG chr11:94877593-94877673 4 3.35e-04 ACA CTCTGGAT CTCCTTACCA chr1:7907851-7907931 27 3.35e-04 CTTGTATGGT TTCCAGAT TCTGGCCAAA chr9:19161823-19161903 20 3.81e-04 AATGACTCCA ATCTAGAG CAAAGTTAGT chr3:65486218-65486298 37 3.81e-04 TATCTTTTTA TTCTAGAC ATTCTCTTGA chr6:10402029-10402109 34 3.81e-04 GGTGGCAGTT ATCTAGAG CAGGGAGTGA chr11:47299814-47299894 62 3.81e-04 GAGGATTGCA TTCTAGAC CCAGTCCTGA chr10:74147067-74147147 57 3.99e-04 CCTTTGCAGG ATCTGGAA AGGTCTAGAA chr9:131953632-131953712 22 4.59e-04 aagagccaga gtctagaa ttttggcctc chr19:3262526-3262606 37 4.59e-04 GACAGCATAG GTCTAGAA TATTCTAGAC chr1:39255596-39255676 44 4.59e-04 GAACAAAGAG GTCTAGAA AACAGCCTCC chr18:57528452-57528532 37 4.89e-04 AGCTGAACAT TTCTGGAC TCTGGCAGAG chr3:186254753-186254833 11 4.89e-04 AGCAATCTCT TTCTGGAC CAAGGCATGA chr6:28948723-28948803 19 5.07e-04 acacgtacac atccagaa ggtctcctgg chr6:28675741-28675821 12 5.07e-04 tagagagaca atccagaa atgaggagaa chr1:118153842-118153922 14 5.07e-04 AAGAGGACTG ATCCAGAA GCAGAGATGA chr4:87932900-87932980 45 5.23e-04 CTGACTCACA GTCTAGAG CTGCTTCCAT chr5:149522472-149522552 68 6.86e-04 tactactgac ctccagac attat chr6:143386312-143386392 39 6.86e-04 cctgcaggcc atctggat gtatatgtgt chr19:49471746-49471826 63 6.86e-04 GTAGGATCTG GTCCAGAA AGGGCCAGAA chr10:18871877-18871957 59 7.60e-04 gcacatacac atccagat agcctgcagg chr8:85980999-85981079 39 7.60e-04 gcacgtacac atccagat ggccggttcc chr4:88343793-88343873 35 8.16e-04 TCACGTGCTG GTCTGGAT TTTTCTCGAT chr1:11990009-11990089 62 8.57e-04 CAGAAGTAAC ATCTGGAC GGCAGCCACC chr3:44564094-44564174 63 9.01e-04 gcacgtatac atccagac ggcctgcagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:181998334-181998414 2e-05 19_[+1]_53 chr1:183447291-183447371 2e-05 44_[+1]_28 chr7:106742727-106742807 2e-05 68_[+1]_4 chr15:60973741-60973821 2e-05 12_[+1]_60 chr10:4053748-4053828 2e-05 19_[+1]_53 chr20:17891652-17891732 2e-05 68_[+1]_4 chr20:44547097-44547177 2e-05 66_[+1]_6 chr1:229887602-229887682 2e-05 56_[+1]_16 chr19:51338514-51338594 2e-05 8_[+1]_64 chr14:31500865-31500945 2e-05 3_[+1]_69 chr11:117689075-11768915 2e-05 48_[+1]_24 chr11:107272053-10727213 2e-05 10_[+1]_62 chr12:76175487-76175567 2e-05 66_[+1]_6 chr12:1704512-1704592 2e-05 35_[+1]_37 chr9:75764530-75764610 2e-05 43_[+1]_29 chr7:50423950-50424030 2e-05 14_[+1]_58 chr3:71545412-71545492 2e-05 34_[+1]_38 chr6:36087142-36087222 2e-05 43_[+1]_29 chr6:151007102-151007182 2e-05 47_[+1]_25 chrX:38499155-38499235 2e-05 51_[+1]_21 chr1:78470510-78470590 2e-05 14_[+1]_58 chr11:4913374-4913454 2e-05 39_[+1]_33 chr9:90427868-90427948 2e-05 20_[+1]_52 chr19:49253212-49253292 2e-05 39_[+1]_33 chr3:13620701-13620781 2e-05 65_[+1]_7 chr4:25308433-25308513 2e-05 21_[+1]_51 chr7:120678031-120678111 2e-05 43_[+1]_29 chr19:18100397-18100477 3.8e-05 37_[+1]_35 chr1:202928468-202928548 3.8e-05 42_[+1]_30 chr1:156711242-156711322 3.8e-05 69_[+1]_3 chr3:87845663-87845743 3.8e-05 22_[+1]_50 chr1:26827789-26827869 3.8e-05 53_[+1]_19 chr11:65261302-65261382 3.8e-05 1_[+1]_71 chr11:134665775-13466585 3.8e-05 22_[+1]_50 chr12:30685309-30685389 3.8e-05 37_[+1]_35 chr9:93578118-93578198 3.8e-05 58_[+1]_14 chr1:62978843-62978923 3.8e-05 12_[+1]_60 chr20:30586168-30586248 3.8e-05 53_[+1]_19 chr13:41538247-41538327 3.8e-05 66_[+1]_6 chr5:130709146-130709226 3.8e-05 20_[+1]_52 chr15:85590512-85590592 3.8e-05 18_[+1]_54 chr1:78227876-78227956 3.8e-05 20_[+1]_52 chr1:924402-924482 3.8e-05 31_[+1]_41 chr10:75823154-75823234 3.8e-05 56_[+1]_16 chr20:56041195-56041275 3.8e-05 49_[+1]_23 chr2:86221340-86221420 5.5e-05 66_[+1]_6 chr16:1325324-1325404 5.5e-05 4_[+1]_68 chr20:30944942-30945022 5.5e-05 19_[+1]_53 chr16:1325112-1325192 5.5e-05 24_[+1]_48 chr1:46764151-46764231 5.5e-05 17_[+1]_55 chr9:119079944-119080024 5.5e-05 20_[+1]_52 chr5:34924199-34924279 5.5e-05 63_[+1]_9 chr20:45802647-45802727 5.5e-05 37_[+1]_35 chr14:25517614-25517694 5.5e-05 23_[+1]_49 chr10:134893-134973 5.5e-05 24_[+1]_48 chr15:63683965-63684045 5.5e-05 9_[+1]_63 chr8:37447905-37447985 5.5e-05 68_[+1]_4 chr8:41892987-41893067 5.5e-05 14_[+1]_58 chr12:124710428-12471050 5.5e-05 24_[+1]_48 chr3:50687594-50687674 5.5e-05 29_[+1]_43 chr12:122521123-12252120 7.3e-05 67_[+1]_5 chr1:113760546-113760626 7.3e-05 36_[+1]_36 chr20:23094860-23094940 7.3e-05 39_[+1]_33 chr6:44215506-44215586 7.3e-05 8_[+1]_64 chr16:81130442-81130522 7.3e-05 61_[+1]_11 chr3:185694808-185694888 7.3e-05 64_[+1]_8 chr18:75707713-75707793 7.3e-05 49_[+1]_23 chr10:3710586-3710666 7.3e-05 23_[+1]_49 chr19:48167548-48167628 7.3e-05 54_[+1]_18 chr7:106741441-106741521 7.3e-05 11_[+1]_61 chr11:65187591-65187671 7.3e-05 23_[+1]_49 chr3:81793638-81793718 7.3e-05 10_[+1]_62 chr1:150135522-150135602 8.8e-05 12_[+1]_60 chr16:15670519-15670599 8.8e-05 45_[+1]_27 chr12:112677905-11267798 8.8e-05 5_[+1]_67 chr15:31555671-31555751 8.8e-05 26_[+1]_46 chr1:193091539-193091619 8.8e-05 56_[+1]_16 chr12:125596082-12559616 8.8e-05 37_[+1]_35 chr9:19748928-19749008 8.8e-05 38_[+1]_34 chr1:36253278-36253358 8.8e-05 12_[+1]_60 chr12:122186858-12218693 0.0001 38_[+1]_34 chr3:16346233-16346313 0.0001 46_[+1]_26 chr6:120061063-120061143 0.0001 47_[+1]_25 chr3:37270287-37270367 0.0001 29_[+1]_43 chr17:75424504-75424584 0.0001 10_[+1]_62 chr17:60758910-60758990 0.0001 59_[+1]_13 chr1:54520094-54520174 0.0001 57_[+1]_15 chr5:39399717-39399797 0.0001 35_[+1]_37 chr11:46258838-46258918 0.0001 17_[+1]_55 chr1:44020243-44020323 0.0001 22_[+1]_50 chr1:68368599-68368679 0.0001 48_[+1]_24 chr3:136618697-136618777 0.0001 54_[+1]_18 chr9:138693061-138693141 0.0001 35_[+1]_37 chr5:149012131-149012211 0.0001 24_[+1]_48 chr16:87887254-87887334 0.0001 55_[+1]_17 chr9:135983533-135983613 0.0001 18_[+1]_54 chr11:134665575-13466565 0.0001 [+1]_72 chr2:197265054-197265134 0.00013 55_[+1]_17 chr20:57596238-57596318 0.00013 68_[+1]_4 chr2:198364744-198364824 0.00013 57_[+1]_15 chr1:118107537-118107617 0.00013 35_[+1]_37 chr3:69261654-69261734 0.00013 25_[+1]_47 chr13:31735054-31735134 0.00013 32_[+1]_40 chr10:97026505-97026585 0.00013 72_[+1] chr13:31736085-31736165 0.00013 7_[+1]_65 chr8:77912272-77912352 0.00013 4_[+1]_68 chr7:8857229-8857309 0.00013 21_[+1]_51 chr11:46262585-46262665 0.00013 65_[+1]_7 chr16:55787014-55787094 0.00013 71_[+1]_1 chr11:44799926-44800006 0.00013 51_[+1]_21 chr22:50179861-50179941 0.00013 24_[+1]_48 chr11:65464774-65464854 0.00015 50_[+1]_22 chr22:27031230-27031310 0.00015 30_[+1]_42 chr9:135199959-135200039 0.00015 41_[+1]_31 chr13:60042684-60042764 0.00015 35_[+1]_37 chr1:12040043-12040123 0.00018 27_[+1]_45 chr17:46438276-46438356 0.00018 57_[+1]_15 chr19:14638405-14638485 0.00018 48_[+1]_24 chr1:65432472-65432552 0.00018 68_[+1]_4 chr1:41575469-41575549 0.00018 67_[+1]_5 chr10:4983870-4983950 0.00018 30_[+1]_42 chr21:35406857-35406937 0.00018 4_[+1]_68 chrX:154564016-154564096 0.00018 25_[+1]_47 chr2:10447750-10447830 0.00018 10_[+1]_62 chr15:90708982-90709062 0.00018 53_[+1]_19 chr19:49253004-49253084 0.00018 46_[+1]_26 chr11:71423576-71423656 0.0002 45_[+1]_27 chr11:98420489-98420569 0.0002 24_[+1]_48 chr5:162853367-162853447 0.0002 35_[+1]_37 chr9:114951319-114951399 0.0002 55_[+1]_17 chr6:35311680-35311760 0.0002 12_[+1]_60 chr22:25103486-25103566 0.0002 49_[+1]_23 chr3:196249716-196249796 0.0002 31_[+1]_41 chr1:101281805-101281885 0.0002 18_[+1]_54 chr13:113808827-11380890 0.0002 [+1]_72 chr2:10548554-10548634 0.0002 22_[+1]_50 chr21:40554840-40554920 0.0002 34_[+1]_38 chr1:224007769-224007849 0.0002 10_[+1]_62 chr10:11648181-11648261 0.0002 35_[+1]_37 chr12:53038947-53039027 0.0002 64_[+1]_8 chr2:238349549-238349629 0.0002 20_[+1]_52 chr16:81131374-81131454 0.0002 33_[+1]_39 chr17:33380379-33380459 0.0002 50_[+1]_22 chr19:46706546-46706626 0.00023 32_[+1]_40 chr6:2846699-2846779 0.00026 21_[+1]_51 chr7:51444370-51444450 0.00026 25_[+1]_47 chr16:77792570-77792650 0.00026 44_[+1]_28 chr19:14765757-14765837 0.00026 70_[+1]_2 chr3:167791999-167792079 0.00026 34_[+1]_38 chr3:61237478-61237558 0.00026 34_[+1]_38 chr17:56494867-56494947 0.00026 12_[+1]_60 chr4:80131611-80131691 0.00026 2_[+1]_70 chr1:182365873-182365953 0.00026 21_[+1]_51 chr2:75937559-75937639 0.00026 25_[+1]_47 chr19:55695243-55695323 0.00026 61_[+1]_11 chr19:51337194-51337274 0.00026 14_[+1]_58 chr17:14209308-14209388 0.00026 16_[+1]_56 chr12:7014757-7014837 0.00026 13_[+1]_59 chr20:60841496-60841576 0.00026 53_[+1]_19 chr17:17640039-17640119 0.00026 44_[+1]_28 chr6:168105079-168105159 0.00027 14_[+1]_58 chr2:169907464-169907544 0.0003 57_[+1]_15 chr18:55454660-55454740 0.0003 16_[+1]_56 chr1:160548321-160548401 0.0003 56_[+1]_16 chr8:27220303-27220383 0.0003 11_[+1]_61 chr7:101861028-101861108 0.00033 2_[+1]_70 chr11:94877593-94877673 0.00033 3_[+1]_69 chr1:7907851-7907931 0.00033 26_[+1]_46 chr9:19161823-19161903 0.00038 19_[+1]_53 chr3:65486218-65486298 0.00038 36_[+1]_36 chr6:10402029-10402109 0.00038 33_[+1]_39 chr11:47299814-47299894 0.00038 61_[+1]_11 chr10:74147067-74147147 0.0004 56_[+1]_16 chr9:131953632-131953712 0.00046 21_[+1]_51 chr19:3262526-3262606 0.00046 36_[+1]_36 chr1:39255596-39255676 0.00046 43_[+1]_29 chr18:57528452-57528532 0.00049 36_[+1]_36 chr3:186254753-186254833 0.00049 10_[+1]_62 chr6:28948723-28948803 0.00051 18_[+1]_54 chr6:28675741-28675821 0.00051 11_[+1]_61 chr1:118153842-118153922 0.00051 13_[+1]_59 chr4:87932900-87932980 0.00052 44_[+1]_28 chr5:149522472-149522552 0.00069 67_[+1]_5 chr6:143386312-143386392 0.00069 38_[+1]_34 chr19:49471746-49471826 0.00069 62_[+1]_10 chr10:18871877-18871957 0.00076 58_[+1]_14 chr8:85980999-85981079 0.00076 38_[+1]_34 chr4:88343793-88343873 0.00082 34_[+1]_38 chr1:11990009-11990089 0.00086 61_[+1]_11 chr3:44564094-44564174 0.0009 62_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTRGAR width=8 seqs=190 chr1:181998334-181998414 ( 20) TTCTAGAA 1 chr1:183447291-183447371 ( 45) TTCTAGAA 1 chr7:106742727-106742807 ( 69) TTCTAGAA 1 chr15:60973741-60973821 ( 13) TTCTAGAA 1 chr10:4053748-4053828 ( 20) TTCTAGAA 1 chr20:17891652-17891732 ( 69) TTCTAGAA 1 chr20:44547097-44547177 ( 67) TTCTAGAA 1 chr1:229887602-229887682 ( 57) TTCTAGAA 1 chr19:51338514-51338594 ( 9) TTCTAGAA 1 chr14:31500865-31500945 ( 4) TTCTAGAA 1 chr11:117689075-11768915 ( 49) TTCTAGAA 1 chr11:107272053-10727213 ( 11) TTCTAGAA 1 chr12:76175487-76175567 ( 67) TTCTAGAA 1 chr12:1704512-1704592 ( 36) TTCTAGAA 1 chr9:75764530-75764610 ( 44) TTCTAGAA 1 chr7:50423950-50424030 ( 15) TTCTAGAA 1 chr3:71545412-71545492 ( 35) TTCTAGAA 1 chr6:36087142-36087222 ( 44) TTCTAGAA 1 chr6:151007102-151007182 ( 48) TTCTAGAA 1 chrX:38499155-38499235 ( 52) TTCTAGAA 1 chr1:78470510-78470590 ( 15) TTCTAGAA 1 chr11:4913374-4913454 ( 40) TTCTAGAA 1 chr9:90427868-90427948 ( 21) TTCTAGAA 1 chr19:49253212-49253292 ( 40) TTCTAGAA 1 chr3:13620701-13620781 ( 66) TTCTAGAA 1 chr4:25308433-25308513 ( 22) TTCTAGAA 1 chr7:120678031-120678111 ( 44) TTCTAGAA 1 chr19:18100397-18100477 ( 38) TTCTAGAG 1 chr1:202928468-202928548 ( 43) TTCTAGAG 1 chr1:156711242-156711322 ( 70) TTCTAGAG 1 chr3:87845663-87845743 ( 23) TTCTAGAG 1 chr1:26827789-26827869 ( 54) TTCTAGAG 1 chr11:65261302-65261382 ( 2) TTCTAGAG 1 chr11:134665775-13466585 ( 23) TTCTAGAG 1 chr12:30685309-30685389 ( 38) TTCTAGAG 1 chr9:93578118-93578198 ( 59) TTCTAGAG 1 chr1:62978843-62978923 ( 13) TTCTAGAG 1 chr20:30586168-30586248 ( 54) TTCTAGAG 1 chr13:41538247-41538327 ( 67) TTCTAGAG 1 chr5:130709146-130709226 ( 21) TTCTAGAG 1 chr15:85590512-85590592 ( 19) TTCTAGAG 1 chr1:78227876-78227956 ( 21) TTCTAGAG 1 chr1:924402-924482 ( 32) TTCTAGAG 1 chr10:75823154-75823234 ( 57) TTCTAGAG 1 chr20:56041195-56041275 ( 50) TTCTAGAG 1 chr2:86221340-86221420 ( 67) CTCTAGAA 1 chr16:1325324-1325404 ( 5) CTCTAGAA 1 chr20:30944942-30945022 ( 20) CTCTAGAA 1 chr16:1325112-1325192 ( 25) CTCTAGAA 1 chr1:46764151-46764231 ( 18) CTCTAGAA 1 chr9:119079944-119080024 ( 21) CTCTAGAA 1 chr5:34924199-34924279 ( 64) CTCTAGAA 1 chr20:45802647-45802727 ( 38) CTCTAGAA 1 chr14:25517614-25517694 ( 24) CTCTAGAA 1 chr10:134893-134973 ( 25) CTCTAGAA 1 chr15:63683965-63684045 ( 10) CTCTAGAA 1 chr8:37447905-37447985 ( 69) CTCTAGAA 1 chr8:41892987-41893067 ( 15) CTCTAGAA 1 chr12:124710428-12471050 ( 25) CTCTAGAA 1 chr3:50687594-50687674 ( 30) CTCTAGAA 1 chr12:122521123-12252120 ( 68) TTCTGGAA 1 chr1:113760546-113760626 ( 37) TTCTGGAA 1 chr20:23094860-23094940 ( 40) TTCTGGAA 1 chr6:44215506-44215586 ( 9) TTCTGGAA 1 chr16:81130442-81130522 ( 62) TTCTGGAA 1 chr3:185694808-185694888 ( 65) TTCTGGAA 1 chr18:75707713-75707793 ( 50) TTCTGGAA 1 chr10:3710586-3710666 ( 24) TTCTGGAA 1 chr19:48167548-48167628 ( 55) TTCTGGAA 1 chr7:106741441-106741521 ( 12) TTCTGGAA 1 chr11:65187591-65187671 ( 24) TTCTGGAA 1 chr3:81793638-81793718 ( 11) TTCTGGAA 1 chr1:150135522-150135602 ( 13) CTCTAGAG 1 chr16:15670519-15670599 ( 46) CTCTAGAG 1 chr12:112677905-11267798 ( 6) CTCTAGAG 1 chr15:31555671-31555751 ( 27) CTCTAGAG 1 chr1:193091539-193091619 ( 57) CTCTAGAG 1 chr12:125596082-12559616 ( 38) CTCTAGAG 1 chr9:19748928-19749008 ( 39) CTCTAGAG 1 chr1:36253278-36253358 ( 13) CTCTAGAG 1 chr12:122186858-12218693 ( 39) TTCTGGAG 1 chr3:16346233-16346313 ( 47) TTCTGGAG 1 chr6:120061063-120061143 ( 48) TTCTGGAG 1 chr3:37270287-37270367 ( 30) TTCTGGAG 1 chr17:75424504-75424584 ( 11) TTCTGGAG 1 chr17:60758910-60758990 ( 60) TTCTGGAG 1 chr1:54520094-54520174 ( 58) TTCTGGAG 1 chr5:39399717-39399797 ( 36) TTCTGGAG 1 chr11:46258838-46258918 ( 18) TTCTGGAG 1 chr1:44020243-44020323 ( 23) TTCTGGAG 1 chr1:68368599-68368679 ( 49) TTCTGGAG 1 chr3:136618697-136618777 ( 55) TTCTGGAG 1 chr9:138693061-138693141 ( 36) TTCTGGAG 1 chr5:149012131-149012211 ( 25) TTCTGGAG 1 chr16:87887254-87887334 ( 56) TTCTGGAG 1 chr9:135983533-135983613 ( 19) TTCTGGAG 1 chr11:134665575-13466565 ( 1) TTCTGGAG 1 chr2:197265054-197265134 ( 56) CTCTGGAA 1 chr20:57596238-57596318 ( 69) CTCTGGAA 1 chr2:198364744-198364824 ( 58) TTCCAGAA 1 chr1:118107537-118107617 ( 36) TTCCAGAA 1 chr3:69261654-69261734 ( 26) CTCTGGAA 1 chr13:31735054-31735134 ( 33) CTCTGGAA 1 chr10:97026505-97026585 ( 73) TTCCAGAA 1 chr13:31736085-31736165 ( 8) TTCCAGAA 1 chr8:77912272-77912352 ( 5) CTCTGGAA 1 chr7:8857229-8857309 ( 22) TTCCAGAA 1 chr11:46262585-46262665 ( 66) CTCTGGAA 1 chr16:55787014-55787094 ( 72) TTCCAGAA 1 chr11:44799926-44800006 ( 52) CTCTGGAA 1 chr22:50179861-50179941 ( 25) TTCCAGAA 1 chr11:65464774-65464854 ( 51) TTCTAGAT 1 chr22:27031230-27031310 ( 31) TTCTAGAT 1 chr9:135199959-135200039 ( 42) TTCTAGAT 1 chr13:60042684-60042764 ( 36) TTCTAGAT 1 chr1:12040043-12040123 ( 28) TTCCAGAG 1 chr17:46438276-46438356 ( 58) CTCTGGAG 1 chr19:14638405-14638485 ( 49) TTCCAGAG 1 chr1:65432472-65432552 ( 69) CTCTGGAG 1 chr1:41575469-41575549 ( 68) CTCTGGAG 1 chr10:4983870-4983950 ( 31) TTCCAGAG 1 chr21:35406857-35406937 ( 5) TTCCAGAG 1 chrX:154564016-154564096 ( 26) TTCCAGAG 1 chr2:10447750-10447830 ( 11) CTCTGGAG 1 chr15:90708982-90709062 ( 54) CTCTGGAG 1 chr19:49253004-49253084 ( 47) CTCTGGAG 1 chr11:71423576-71423656 ( 46) CTCCAGAA 1 chr11:98420489-98420569 ( 25) CTCCAGAA 1 chr5:162853367-162853447 ( 36) CTCCAGAA 1 chr9:114951319-114951399 ( 56) CTCCAGAA 1 chr6:35311680-35311760 ( 13) CTCCAGAA 1 chr22:25103486-25103566 ( 50) CTCCAGAA 1 chr3:196249716-196249796 ( 32) CTCCAGAA 1 chr1:101281805-101281885 ( 19) CTCCAGAA 1 chr13:113808827-11380890 ( 1) CTCCAGAA 1 chr2:10548554-10548634 ( 23) CTCCAGAA 1 chr21:40554840-40554920 ( 35) CTCCAGAA 1 chr1:224007769-224007849 ( 11) CTCCAGAA 1 chr10:11648181-11648261 ( 36) CTCCAGAA 1 chr12:53038947-53039027 ( 65) CTCCAGAA 1 chr2:238349549-238349629 ( 21) CTCCAGAA 1 chr16:81131374-81131454 ( 34) CTCCAGAA 1 chr17:33380379-33380459 ( 51) CTCCAGAA 1 chr19:46706546-46706626 ( 33) CTCTAGAT 1 chr6:2846699-2846779 ( 22) CTCCAGAG 1 chr7:51444370-51444450 ( 26) CTCCAGAG 1 chr16:77792570-77792650 ( 45) TTCTGGAT 1 chr19:14765757-14765837 ( 71) TTCTGGAT 1 chr3:167791999-167792079 ( 35) TTCTGGAT 1 chr3:61237478-61237558 ( 35) TTCTGGAT 1 chr17:56494867-56494947 ( 13) TTCTGGAT 1 chr4:80131611-80131691 ( 3) TTCTGGAT 1 chr1:182365873-182365953 ( 22) TTCTGGAT 1 chr2:75937559-75937639 ( 26) TTCTGGAT 1 chr19:55695243-55695323 ( 62) TTCTGGAT 1 chr19:51337194-51337274 ( 15) TTCTGGAT 1 chr17:14209308-14209388 ( 17) TTCTGGAT 1 chr12:7014757-7014837 ( 14) CTCCAGAG 1 chr20:60841496-60841576 ( 54) TTCTGGAT 1 chr17:17640039-17640119 ( 45) TTCTGGAT 1 chr6:168105079-168105159 ( 15) TTCCGGAG 1 chr2:169907464-169907544 ( 58) ATCTAGAA 1 chr18:55454660-55454740 ( 17) ATCTAGAA 1 chr1:160548321-160548401 ( 57) ATCTAGAA 1 chr8:27220303-27220383 ( 12) ATCTAGAA 1 chr7:101861028-101861108 ( 3) CTCTGGAT 1 chr11:94877593-94877673 ( 4) CTCTGGAT 1 chr1:7907851-7907931 ( 27) TTCCAGAT 1 chr9:19161823-19161903 ( 20) ATCTAGAG 1 chr3:65486218-65486298 ( 37) TTCTAGAC 1 chr6:10402029-10402109 ( 34) ATCTAGAG 1 chr11:47299814-47299894 ( 62) TTCTAGAC 1 chr10:74147067-74147147 ( 57) ATCTGGAA 1 chr9:131953632-131953712 ( 22) GTCTAGAA 1 chr19:3262526-3262606 ( 37) GTCTAGAA 1 chr1:39255596-39255676 ( 44) GTCTAGAA 1 chr18:57528452-57528532 ( 37) TTCTGGAC 1 chr3:186254753-186254833 ( 11) TTCTGGAC 1 chr6:28948723-28948803 ( 19) ATCCAGAA 1 chr6:28675741-28675821 ( 12) ATCCAGAA 1 chr1:118153842-118153922 ( 14) ATCCAGAA 1 chr4:87932900-87932980 ( 45) GTCTAGAG 1 chr5:149522472-149522552 ( 68) CTCCAGAC 1 chr6:143386312-143386392 ( 39) ATCTGGAT 1 chr19:49471746-49471826 ( 63) GTCCAGAA 1 chr10:18871877-18871957 ( 59) ATCCAGAT 1 chr8:85980999-85981079 ( 39) ATCCAGAT 1 chr4:88343793-88343873 ( 35) GTCTGGAT 1 chr1:11990009-11990089 ( 62) ATCTGGAC 1 chr3:44564094-44564174 ( 63) ATCCAGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.66957 E= 4.7e-203 -180 50 -291 111 -1421 -1421 -1421 192 -1421 217 -1421 -1421 -1421 -1 -1421 156 127 -1421 50 -1421 -1421 -1421 207 -1421 187 -1421 -1421 -1421 90 -259 43 -101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 190 E= 4.7e-203 0.078947 0.315789 0.031579 0.573684 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.221053 0.000000 0.778947 0.663158 0.000000 0.336842 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.510526 0.036842 0.321053 0.131579 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTRGAR MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TC[TC][AG]GA[AG] -------------------------------------------------------------------------------- Time 4.76 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTAGAAR MEME-2 width = 8 sites = 108 llr = 804 E-value = 7.3e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::7:a64 pos.-specific C :a3::::2 probability G :::3a:22 matrix T a:7:::22 bits 2.2 * * 2.0 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ****** (10.7 bits) 0.9 ****** 0.7 ****** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TCTAGAAA consensus CG TG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:1325324-1325404 39 2.10e-05 ACGCACACAC TCTAGAAA AGGGAGGCGG chr16:1325112-1325192 59 2.10e-05 ACACACACAC TCTAGAAA AGGGAGACGG chr11:65261302-65261382 13 2.10e-05 TCTAGAGAGC TCTAGAAA TGCAGAATTA chr11:117689075-11768915 60 2.10e-05 TCTAGAACAT TCTAGAAA CGTGATTCTT chr14:25517614-25517694 66 2.10e-05 GATTCGCACA TCTAGAAA TCGGCCC chr8:37447905-37447985 17 2.10e-05 GCCTGGCAGA TCTAGAAA GAGCTTCTAG chr3:13620701-13620781 57 2.10e-05 atgAGATTGC tctagaaa cttctagaat chr12:124710428-12471050 54 2.10e-05 ACCAGCATCC TCTAGAAA TACAATCTAG chr10:75823154-75823234 22 2.10e-05 ttctggaaac tctagaaa agactctgtt chr17:33380379-33380459 22 2.10e-05 tctggaaaaa TCTAGAAA AAACAGGGAG chr20:23094860-23094940 29 3.93e-05 tcccccacaA TCTAGAAG CTGTTCTGGA chr9:138693061-138693141 57 3.93e-05 ctccagagaa tctagaag cctttccagc chr10:134893-134973 6 3.93e-05 GGCTC TCTAGAAG GTGGACAGGC chr6:36087142-36087222 55 3.93e-05 tctagaactt tctagaag ctttctcgta chr1:78470510-78470590 54 3.93e-05 AATGGGAGGA TCTAGAAG GAGGCTGTCT chr12:7014757-7014837 58 3.93e-05 ATGAAGATGA TCTAGAAG ACTCTGAGCC chr3:50687594-50687674 21 3.93e-05 ATCTAGAGTA TCTAGAAG TCTCTAGAAG chr4:25308433-25308513 13 3.93e-05 CTAGAGGAAC TCTAGAAG CTTCTAGAAG chr18:55454660-55454740 44 5.64e-05 AGGAGCTCCA TCTAGAAC ACTGCGGGAG chr22:27031230-27031310 44 5.64e-05 TAGATCTGGA TCTAGAAC AAGGACGCTT chr13:41538247-41538327 41 5.64e-05 ACCTAAGAAC TCTAGAAC CACACATTCT chr8:27220303-27220383 36 5.64e-05 CCACACGAAA TCTAGAAC TGCTCCCACA chr1:36253278-36253358 31 5.64e-05 ccctctatga tctagaac ctttcaggag chr6:120061063-120061143 18 7.40e-05 AGAGAAATGC TCCAGAAA ATGTAGCTGA chr17:75424504-75424584 35 7.40e-05 AACTTCCTTA TCCAGAAA AAGAGGAACT chr6:35311680-35311760 28 7.40e-05 GAAGCTGTGC TCCAGAAA ATACTTGTGG chr11:107272053-10727213 1 7.40e-05 . tccagaaa gcttctagaa chr12:76175487-76175567 21 7.40e-05 aaataagccc tccagaaa tgtgcataat chr9:135199959-135200039 17 7.40e-05 atctgatctc tccagaaa gtgccctgtc chr11:46262585-46262665 54 7.40e-05 CCCTCCCTTT TCCAGAAA TTTGCTCTGG chr21:40554840-40554920 25 7.40e-05 ACACCAAGCc tccagaaa tgctccagaa chr9:90427868-90427948 56 7.40e-05 AGAGGAAAAA TCCAGAAA TTAAAGAAAA chr19:49253212-49253292 60 7.40e-05 TTCAGACAGT TCCAGAAA CGTCCCCCTT chr2:238349549-238349629 5 7.40e-05 CAGC TCCAGAAA TGACACAACT chr19:49253004-49253084 12 7.40e-05 CTAGAATCAC TCCAGAAA CACAGAAGGG chr15:31555671-31555751 57 9.23e-05 GCATGCAGAC TCTGGAAA TTTATCCCAC chr1:68368599-68368679 8 9.23e-05 ttttgtg tctggaaa cgttactgaa chr11:71423576-71423656 66 1.31e-04 tacaagaaaa tctagata agcacca chr9:93578118-93578198 50 1.31e-04 AGGTGATAAT TCTAGATA ATTCTAGAGC chr1:62978843-62978923 42 1.31e-04 GAGAGGACTT TCTAGAGA ACGTTTTCTA chr20:45802647-45802727 19 1.31e-04 TCAGCCGTAG TCTAGAGA ATTCTGGAGT chr19:6829106-6829186 1 1.31e-04 . TCTAGATA GGCAGATGGG chr19:55695243-55695323 51 1.31e-04 ctttggctga tctagata tGCTTCTGGA chr11:65187591-65187671 45 1.31e-04 CTTGTTTTGA TCTAGAGA AATCTGCTGA chr8:41892987-41893067 4 1.31e-04 atc tctagata actctctaga chr10:4053748-4053828 70 1.51e-04 cagatctaga tctagaat cca chr1:229887602-229887682 45 1.51e-04 CCTGGAATAC TCTAGAAT AATATTCTAG chr10:74147067-74147147 68 1.51e-04 TCTGGAAAGG TCTAGAAT TAATT chr12:1704512-1704592 47 1.51e-04 TCTAGAAATT TCTAGAAT TATCCATGAC chr10:11648181-11648261 50 1.51e-04 agaagactta tctagaat tctacatcca chr20:30586168-30586248 25 1.67e-04 GAGGAACTGA TCCAGAAG CAGGCTTAGT chr3:196249716-196249796 15 1.67e-04 ctaacattaa tccagaag tgtgggctac chr1:224007769-224007849 42 1.67e-04 ttagctgcaa tccagaag gaaccagcaa chr22:50179861-50179941 62 1.67e-04 AGCCGGCACC TCCAGAAG CGCAGCCAGT chr19:18100397-18100477 49 1.97e-04 TCTAGAGGTT TCTGGAAG ATTCTAGACA chr2:198364744-198364824 49 1.97e-04 CTCGCTCGGT TCCAGAAC TTTCCAGAAA chr12:112677905-11267798 26 1.97e-04 TCTGGATgaa tccagaac tgaagggatc chr7:106742727-106742807 26 1.97e-04 atggcaatga tctggaag ttaccttata chr6:44215506-44215586 63 1.97e-04 CTGAGATTGT TCTGGAAG CTTCTGGATT chr5:149012131-149012211 36 1.97e-04 TCTGGAGGAG TCCAGAAC TGCCTGGTCA chr13:60042684-60042764 8 1.97e-04 tcgcctg tctggaag tgctgatgaa chr7:101861028-101861108 24 2.45e-04 TGTGATGGTG TCTAGAGG GAGGGAGGCT chr1:118153842-118153922 62 2.45e-04 CTGATATGTG TCTAGAGG CTTGCTCACA chr1:78227876-78227956 61 2.45e-04 TCATACTGAT TCTGGAAC AGAATTCTAG chr11:47299814-47299894 45 2.45e-04 CATTGTAGAG TCTAGAGG AGGATTGCAT chr11:65464774-65464854 23 2.92e-04 ACCCCCTTGA TCTAGAGC CTCTCTGGAT chr1:46764151-46764231 31 2.92e-04 TAGAAGCTAA TCTAGATC TGTTCCAAAC chr6:151007102-151007182 59 2.92e-04 TCTAGAACTT TCTAGAGC TACTTGCTCC chr7:8857229-8857309 47 2.92e-04 cagtccccgG TCTAGAGC AAAGTGCTAG chr3:167791999-167792079 21 3.24e-04 actagaacca tccagata agctgcttct chr1:101281805-101281885 62 3.24e-04 cagcaaagtt tccagata caaaattaac chr13:113808827-11380890 61 3.24e-04 GAGAAACATG TCCAGATA GTGTCTTCCA chr15:63683965-63684045 63 3.24e-04 ACTTGAAGGA TCCAGATA CATATGACAA chr12:53038947-53039027 18 3.24e-04 CATATCCTCC TCCAGAGA TGGACCCTCC chr3:81793638-81793718 24 3.24e-04 TGGAAACCTC TCCAGATA ACACTCATAA chr11:98420489-98420569 68 3.75e-04 cagcaaagtt tctggata tgaaa chr1:54520094-54520174 33 3.75e-04 ACGCCTAGAA TCCAGAAT AGCCCTCAGA chr12:125596082-12559616 7 3.75e-04 TGCATC TCTGGAGA AGTGACTAAG chr2:75937559-75937639 13 3.75e-04 CTCACTACCT TCTGGATA AGTCTTTCTG chr11:44799926-44800006 43 3.75e-04 ttttgttggt tccagaat cctctggaaa chr2:10447750-10447830 55 3.75e-04 ACTTGAAATC TCTGGAGA GTTTTGGAGC chr11:4913374-4913454 9 3.75e-04 GTTTATCC TCCAGAAT GAGACTATCA chr15:90708982-90709062 17 3.75e-04 ATTACTCGTT TCTGGATA ATTGTCAGTG chr3:37270287-37270367 44 3.93e-04 GGAGGTTGAA TCTGGAAT GAACAGTTCT chr1:181998334-181998414 11 4.43e-04 ggtgtgaacc tctagagt cttctagaat chr3:185694808-185694888 2 4.43e-04 A TCTAGATT CCCAATTCAG chrX:38499155-38499235 29 4.43e-04 TCTAGATTTT TCTAGATT CTTCTTTCTG chr8:77912272-77912352 52 4.84e-04 TACCAAGGCT TCCGGAAC TCGCAGGCTT chr9:131953632-131953712 64 5.39e-04 ccagcgctta tctgGATG CTTCAGGAA chr19:14638405-14638485 62 5.39e-04 CAGAGCCAAA TCTGGATG ACTGAGTTCC chr1:113760546-113760626 4 5.39e-04 agt tctggagg ctgaaccttg chr1:26827789-26827869 37 5.39e-04 GGGGGCCAGA TCTGGAGG CGATGGTTTT chr11:134665775-13466585 70 5.39e-04 TTATCTTCTT TCTGGAGG AGG chr9:135983533-135983613 38 5.39e-04 TGGCTCTAGT TCCAGAGC TGGCGCTGGA chr11:134665575-13466565 23 5.39e-04 AGTATTATCT TCTGGAGG GGGAGTATTA chr7:120678031-120678111 56 5.39e-04 ctagaatctt tctggatg agtctttagg chr16:77792570-77792650 63 5.67e-04 CTAGTCCTGG TCTGGATC TAGTCTCTGG chr3:61237478-61237558 26 5.67e-04 ATTTCCCCAC TCTGGATC TTTCTGGATT chr19:3262526-3262606 61 5.67e-04 AGACCCAGGG TCTGGATC ATATCGGACA chr18:75707713-75707793 69 5.67e-04 GGGGAACAGT TCTGGAGC TAGG chr7:50423950-50424030 35 5.67e-04 ATCAGGAACT TCTGGATC TAGTACCCTG chr20:56041195-56041275 40 5.67e-04 tggagtcctt tctggagc ctttctagag chr6:168105079-168105159 37 5.95e-04 TCCTCCCAGC TCCGGAGA GACTCCTCCC chr15:60973741-60973821 4 6.10e-04 TGT TCCGGAAT ATTCTAGAAC chr1:182365873-182365953 53 6.73e-04 TTAGTCTGCT TCTGGATT TTTCCTGTCC chr16:87887254-87887334 69 6.73e-04 TGGAGAGCTT TCTGGATT CGCA chr19:51337194-51337274 36 6.73e-04 GGTCTTGGAT TCTGGATT TGAGGATCTT chr1:924402-924482 10 6.73e-04 GGTTGACTT TCTGGAGT TCGTGGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:1325324-1325404 2.1e-05 38_[+2]_34 chr16:1325112-1325192 2.1e-05 58_[+2]_14 chr11:65261302-65261382 2.1e-05 12_[+2]_60 chr11:117689075-11768915 2.1e-05 59_[+2]_13 chr14:25517614-25517694 2.1e-05 65_[+2]_7 chr8:37447905-37447985 2.1e-05 16_[+2]_56 chr3:13620701-13620781 2.1e-05 56_[+2]_16 chr12:124710428-12471050 2.1e-05 53_[+2]_19 chr10:75823154-75823234 2.1e-05 21_[+2]_51 chr17:33380379-33380459 2.1e-05 21_[+2]_51 chr20:23094860-23094940 3.9e-05 28_[+2]_44 chr9:138693061-138693141 3.9e-05 56_[+2]_16 chr10:134893-134973 3.9e-05 5_[+2]_67 chr6:36087142-36087222 3.9e-05 54_[+2]_18 chr1:78470510-78470590 3.9e-05 53_[+2]_19 chr12:7014757-7014837 3.9e-05 57_[+2]_15 chr3:50687594-50687674 3.9e-05 20_[+2]_52 chr4:25308433-25308513 3.9e-05 12_[+2]_60 chr18:55454660-55454740 5.6e-05 43_[+2]_29 chr22:27031230-27031310 5.6e-05 43_[+2]_29 chr13:41538247-41538327 5.6e-05 40_[+2]_32 chr8:27220303-27220383 5.6e-05 35_[+2]_37 chr1:36253278-36253358 5.6e-05 30_[+2]_42 chr6:120061063-120061143 7.4e-05 17_[+2]_55 chr17:75424504-75424584 7.4e-05 34_[+2]_38 chr6:35311680-35311760 7.4e-05 27_[+2]_45 chr11:107272053-10727213 7.4e-05 [+2]_72 chr12:76175487-76175567 7.4e-05 20_[+2]_52 chr9:135199959-135200039 7.4e-05 16_[+2]_56 chr11:46262585-46262665 7.4e-05 53_[+2]_19 chr21:40554840-40554920 7.4e-05 24_[+2]_48 chr9:90427868-90427948 7.4e-05 55_[+2]_17 chr19:49253212-49253292 7.4e-05 59_[+2]_13 chr2:238349549-238349629 7.4e-05 4_[+2]_68 chr19:49253004-49253084 7.4e-05 11_[+2]_61 chr15:31555671-31555751 9.2e-05 56_[+2]_16 chr1:68368599-68368679 9.2e-05 7_[+2]_65 chr11:71423576-71423656 0.00013 65_[+2]_7 chr9:93578118-93578198 0.00013 49_[+2]_23 chr1:62978843-62978923 0.00013 41_[+2]_31 chr20:45802647-45802727 0.00013 18_[+2]_54 chr19:6829106-6829186 0.00013 [+2]_72 chr19:55695243-55695323 0.00013 50_[+2]_22 chr11:65187591-65187671 0.00013 44_[+2]_28 chr8:41892987-41893067 0.00013 3_[+2]_69 chr10:4053748-4053828 0.00015 69_[+2]_3 chr1:229887602-229887682 0.00015 44_[+2]_28 chr10:74147067-74147147 0.00015 67_[+2]_5 chr12:1704512-1704592 0.00015 46_[+2]_26 chr10:11648181-11648261 0.00015 49_[+2]_23 chr20:30586168-30586248 0.00017 24_[+2]_48 chr3:196249716-196249796 0.00017 14_[+2]_58 chr1:224007769-224007849 0.00017 41_[+2]_31 chr22:50179861-50179941 0.00017 61_[+2]_11 chr19:18100397-18100477 0.0002 48_[+2]_24 chr2:198364744-198364824 0.0002 48_[+2]_24 chr12:112677905-11267798 0.0002 25_[+2]_47 chr7:106742727-106742807 0.0002 25_[+2]_47 chr6:44215506-44215586 0.0002 62_[+2]_10 chr5:149012131-149012211 0.0002 35_[+2]_37 chr13:60042684-60042764 0.0002 7_[+2]_65 chr7:101861028-101861108 0.00025 23_[+2]_49 chr1:118153842-118153922 0.00025 61_[+2]_11 chr1:78227876-78227956 0.00025 60_[+2]_12 chr11:47299814-47299894 0.00025 44_[+2]_28 chr11:65464774-65464854 0.00029 22_[+2]_50 chr1:46764151-46764231 0.00029 30_[+2]_42 chr6:151007102-151007182 0.00029 58_[+2]_14 chr7:8857229-8857309 0.00029 46_[+2]_26 chr3:167791999-167792079 0.00032 20_[+2]_52 chr1:101281805-101281885 0.00032 61_[+2]_11 chr13:113808827-11380890 0.00032 60_[+2]_12 chr15:63683965-63684045 0.00032 62_[+2]_10 chr12:53038947-53039027 0.00032 17_[+2]_55 chr3:81793638-81793718 0.00032 23_[+2]_49 chr11:98420489-98420569 0.00037 67_[+2]_5 chr1:54520094-54520174 0.00037 32_[+2]_40 chr12:125596082-12559616 0.00037 6_[+2]_66 chr2:75937559-75937639 0.00037 12_[+2]_60 chr11:44799926-44800006 0.00037 42_[+2]_30 chr2:10447750-10447830 0.00037 54_[+2]_18 chr11:4913374-4913454 0.00037 8_[+2]_64 chr15:90708982-90709062 0.00037 16_[+2]_56 chr3:37270287-37270367 0.00039 43_[+2]_29 chr1:181998334-181998414 0.00044 10_[+2]_62 chr3:185694808-185694888 0.00044 1_[+2]_71 chrX:38499155-38499235 0.00044 28_[+2]_44 chr8:77912272-77912352 0.00048 51_[+2]_21 chr9:131953632-131953712 0.00054 63_[+2]_9 chr19:14638405-14638485 0.00054 61_[+2]_11 chr1:113760546-113760626 0.00054 3_[+2]_69 chr1:26827789-26827869 0.00054 36_[+2]_36 chr11:134665775-13466585 0.00054 69_[+2]_3 chr9:135983533-135983613 0.00054 37_[+2]_35 chr11:134665575-13466565 0.00054 22_[+2]_50 chr7:120678031-120678111 0.00054 55_[+2]_17 chr16:77792570-77792650 0.00057 62_[+2]_10 chr3:61237478-61237558 0.00057 25_[+2]_47 chr19:3262526-3262606 0.00057 60_[+2]_12 chr18:75707713-75707793 0.00057 68_[+2]_4 chr7:50423950-50424030 0.00057 34_[+2]_38 chr20:56041195-56041275 0.00057 39_[+2]_33 chr6:168105079-168105159 0.00059 36_[+2]_36 chr15:60973741-60973821 0.00061 3_[+2]_69 chr1:182365873-182365953 0.00067 52_[+2]_20 chr16:87887254-87887334 0.00067 68_[+2]_4 chr19:51337194-51337274 0.00067 35_[+2]_37 chr1:924402-924482 0.00067 9_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTAGAAR width=8 seqs=108 chr16:1325324-1325404 ( 39) TCTAGAAA 1 chr16:1325112-1325192 ( 59) TCTAGAAA 1 chr11:65261302-65261382 ( 13) TCTAGAAA 1 chr11:117689075-11768915 ( 60) TCTAGAAA 1 chr14:25517614-25517694 ( 66) TCTAGAAA 1 chr8:37447905-37447985 ( 17) TCTAGAAA 1 chr3:13620701-13620781 ( 57) TCTAGAAA 1 chr12:124710428-12471050 ( 54) TCTAGAAA 1 chr10:75823154-75823234 ( 22) TCTAGAAA 1 chr17:33380379-33380459 ( 22) TCTAGAAA 1 chr20:23094860-23094940 ( 29) TCTAGAAG 1 chr9:138693061-138693141 ( 57) TCTAGAAG 1 chr10:134893-134973 ( 6) TCTAGAAG 1 chr6:36087142-36087222 ( 55) TCTAGAAG 1 chr1:78470510-78470590 ( 54) TCTAGAAG 1 chr12:7014757-7014837 ( 58) TCTAGAAG 1 chr3:50687594-50687674 ( 21) TCTAGAAG 1 chr4:25308433-25308513 ( 13) TCTAGAAG 1 chr18:55454660-55454740 ( 44) TCTAGAAC 1 chr22:27031230-27031310 ( 44) TCTAGAAC 1 chr13:41538247-41538327 ( 41) TCTAGAAC 1 chr8:27220303-27220383 ( 36) TCTAGAAC 1 chr1:36253278-36253358 ( 31) TCTAGAAC 1 chr6:120061063-120061143 ( 18) TCCAGAAA 1 chr17:75424504-75424584 ( 35) TCCAGAAA 1 chr6:35311680-35311760 ( 28) TCCAGAAA 1 chr11:107272053-10727213 ( 1) TCCAGAAA 1 chr12:76175487-76175567 ( 21) TCCAGAAA 1 chr9:135199959-135200039 ( 17) TCCAGAAA 1 chr11:46262585-46262665 ( 54) TCCAGAAA 1 chr21:40554840-40554920 ( 25) TCCAGAAA 1 chr9:90427868-90427948 ( 56) TCCAGAAA 1 chr19:49253212-49253292 ( 60) TCCAGAAA 1 chr2:238349549-238349629 ( 5) TCCAGAAA 1 chr19:49253004-49253084 ( 12) TCCAGAAA 1 chr15:31555671-31555751 ( 57) TCTGGAAA 1 chr1:68368599-68368679 ( 8) TCTGGAAA 1 chr11:71423576-71423656 ( 66) TCTAGATA 1 chr9:93578118-93578198 ( 50) TCTAGATA 1 chr1:62978843-62978923 ( 42) TCTAGAGA 1 chr20:45802647-45802727 ( 19) TCTAGAGA 1 chr19:6829106-6829186 ( 1) TCTAGATA 1 chr19:55695243-55695323 ( 51) TCTAGATA 1 chr11:65187591-65187671 ( 45) TCTAGAGA 1 chr8:41892987-41893067 ( 4) TCTAGATA 1 chr10:4053748-4053828 ( 70) TCTAGAAT 1 chr1:229887602-229887682 ( 45) TCTAGAAT 1 chr10:74147067-74147147 ( 68) TCTAGAAT 1 chr12:1704512-1704592 ( 47) TCTAGAAT 1 chr10:11648181-11648261 ( 50) TCTAGAAT 1 chr20:30586168-30586248 ( 25) TCCAGAAG 1 chr3:196249716-196249796 ( 15) TCCAGAAG 1 chr1:224007769-224007849 ( 42) TCCAGAAG 1 chr22:50179861-50179941 ( 62) TCCAGAAG 1 chr19:18100397-18100477 ( 49) TCTGGAAG 1 chr2:198364744-198364824 ( 49) TCCAGAAC 1 chr12:112677905-11267798 ( 26) TCCAGAAC 1 chr7:106742727-106742807 ( 26) TCTGGAAG 1 chr6:44215506-44215586 ( 63) TCTGGAAG 1 chr5:149012131-149012211 ( 36) TCCAGAAC 1 chr13:60042684-60042764 ( 8) TCTGGAAG 1 chr7:101861028-101861108 ( 24) TCTAGAGG 1 chr1:118153842-118153922 ( 62) TCTAGAGG 1 chr1:78227876-78227956 ( 61) TCTGGAAC 1 chr11:47299814-47299894 ( 45) TCTAGAGG 1 chr11:65464774-65464854 ( 23) TCTAGAGC 1 chr1:46764151-46764231 ( 31) TCTAGATC 1 chr6:151007102-151007182 ( 59) TCTAGAGC 1 chr7:8857229-8857309 ( 47) TCTAGAGC 1 chr3:167791999-167792079 ( 21) TCCAGATA 1 chr1:101281805-101281885 ( 62) TCCAGATA 1 chr13:113808827-11380890 ( 61) TCCAGATA 1 chr15:63683965-63684045 ( 63) TCCAGATA 1 chr12:53038947-53039027 ( 18) TCCAGAGA 1 chr3:81793638-81793718 ( 24) TCCAGATA 1 chr11:98420489-98420569 ( 68) TCTGGATA 1 chr1:54520094-54520174 ( 33) TCCAGAAT 1 chr12:125596082-12559616 ( 7) TCTGGAGA 1 chr2:75937559-75937639 ( 13) TCTGGATA 1 chr11:44799926-44800006 ( 43) TCCAGAAT 1 chr2:10447750-10447830 ( 55) TCTGGAGA 1 chr11:4913374-4913454 ( 9) TCCAGAAT 1 chr15:90708982-90709062 ( 17) TCTGGATA 1 chr3:37270287-37270367 ( 44) TCTGGAAT 1 chr1:181998334-181998414 ( 11) TCTAGAGT 1 chr3:185694808-185694888 ( 2) TCTAGATT 1 chrX:38499155-38499235 ( 29) TCTAGATT 1 chr8:77912272-77912352 ( 52) TCCGGAAC 1 chr9:131953632-131953712 ( 64) TCTGGATG 1 chr19:14638405-14638485 ( 62) TCTGGATG 1 chr1:113760546-113760626 ( 4) TCTGGAGG 1 chr1:26827789-26827869 ( 37) TCTGGAGG 1 chr11:134665775-13466585 ( 70) TCTGGAGG 1 chr9:135983533-135983613 ( 38) TCCAGAGC 1 chr11:134665575-13466565 ( 23) TCTGGAGG 1 chr7:120678031-120678111 ( 56) TCTGGATG 1 chr16:77792570-77792650 ( 63) TCTGGATC 1 chr3:61237478-61237558 ( 26) TCTGGATC 1 chr19:3262526-3262606 ( 61) TCTGGATC 1 chr18:75707713-75707793 ( 69) TCTGGAGC 1 chr7:50423950-50424030 ( 35) TCTGGATC 1 chr20:56041195-56041275 ( 40) TCTGGAGC 1 chr6:168105079-168105159 ( 37) TCCGGAGA 1 chr15:60973741-60973821 ( 4) TCCGGAAT 1 chr1:182365873-182365953 ( 53) TCTGGATT 1 chr16:87887254-87887334 ( 69) TCTGGATT 1 chr19:51337194-51337274 ( 36) TCTGGATT 1 chr1:924402-924482 ( 10) TCTGGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.59116 E= 7.3e-055 -1340 -1340 -1340 192 -1340 217 -1340 -1340 -1340 41 -1340 141 134 -1340 36 -1340 -1340 -1340 207 -1340 187 -1340 -1340 -1340 102 -1340 -23 -14 57 -19 2 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 7.3e-055 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.296296 0.000000 0.703704 0.694444 0.000000 0.305556 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555556 0.000000 0.203704 0.240741 0.407407 0.194444 0.240741 0.157407 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTAGAAR MEME-2 regular expression -------------------------------------------------------------------------------- TC[TC][AG]GA[ATG][AG] -------------------------------------------------------------------------------- Time 8.17 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGAGTCA MEME-3 width = 8 sites = 22 llr = 199 E-value = 3.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6::a:1:a pos.-specific C 2:::3:a: probability G 2:a:7::: matrix T :a:::9:: bits 2.2 * * 2.0 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 ******* Entropy 1.1 ******* (13.1 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGAGTCA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:26578497-26578577 64 1.82e-05 TCCTTGCTCA ATGAGTCA TGTTCTCTG chr11:107711672-10771175 4 1.82e-05 CCT ATGAGTCA TGTCATCCCT chr7:51444370-51444450 68 1.82e-05 GAGAATTAGT ATGAGTCA TATAA chr7:100861310-100861390 46 1.82e-05 ACGCCACGTA ATGAGTCA AAGCTGTGGC chr5:34924199-34924279 22 1.82e-05 CGGTTAGATG ATGAGTCA CACAGTGACT chr13:41538247-41538327 17 1.82e-05 TGGCTAAAGT ATGAGTCA TCAAGAACCT chrX:154564016-154564096 47 1.82e-05 CTTCAATGCC ATGAGTCA GCACAGGAGA chr16:55787014-55787094 17 1.82e-05 tcaccaggaa atgagtca gcTTAATCAA chr11:4913374-4913454 26 1.82e-05 TGAGACTATC ATGAGTCA TTCCTCTTCT chr10:4983870-4983950 15 3.41e-05 CCTAGTCACT GTGAGTCA GCAAGATTTT chr9:75764530-75764610 64 3.41e-05 AGCAAGAGTG GTGAGTCA TTTCTCTGG chr15:90708982-90709062 32 3.41e-05 ATAATTGTCA GTGAGTCA GACCTCGTTC chr1:7907851-7907931 47 5.12e-05 TGGCCAAAAG ATGACTCA GTAAAATGTT chr1:78227876-78227956 46 6.60e-05 GGACACCCAG CTGAGTCA TACTGATTCT chr1:202928468-202928548 60 8.09e-05 ggcagagaaa gtgactca ttgtaatctg chr11:46258838-46258918 1 8.09e-05 . gtgactca catcttgagt chr2:86221340-86221420 3 9.98e-05 AA ATGAGACA TGTGACCAAA chr17:46438276-46438356 15 9.98e-05 caaccttgca aTGAGACA GTGAAAAACA chr2:238349549-238349629 29 9.98e-05 AACTCCAGAA ATGAGACA GCTCCGGAAA chr2:62531968-62532048 65 1.14e-04 ACGCTGGCGG CTGACTCA CAGGAAAT chr11:94877593-94877673 45 1.14e-04 AGGAAGTCCT CTGACTCA GATCCGTCTC chr4:87932900-87932980 35 1.14e-04 GTTGAGCTTC CTGACTCA CAGTCTAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:26578497-26578577 1.8e-05 63_[+3]_9 chr11:107711672-10771175 1.8e-05 3_[+3]_69 chr7:51444370-51444450 1.8e-05 67_[+3]_5 chr7:100861310-100861390 1.8e-05 45_[+3]_27 chr5:34924199-34924279 1.8e-05 21_[+3]_51 chr13:41538247-41538327 1.8e-05 16_[+3]_56 chrX:154564016-154564096 1.8e-05 46_[+3]_26 chr16:55787014-55787094 1.8e-05 16_[+3]_56 chr11:4913374-4913454 1.8e-05 25_[+3]_47 chr10:4983870-4983950 3.4e-05 14_[+3]_58 chr9:75764530-75764610 3.4e-05 63_[+3]_9 chr15:90708982-90709062 3.4e-05 31_[+3]_41 chr1:7907851-7907931 5.1e-05 46_[+3]_26 chr1:78227876-78227956 6.6e-05 45_[+3]_27 chr1:202928468-202928548 8.1e-05 59_[+3]_13 chr11:46258838-46258918 8.1e-05 [+3]_72 chr2:86221340-86221420 0.0001 2_[+3]_70 chr17:46438276-46438356 0.0001 14_[+3]_58 chr2:238349549-238349629 0.0001 28_[+3]_44 chr2:62531968-62532048 0.00011 64_[+3]_8 chr11:94877593-94877673 0.00011 44_[+3]_28 chr4:87932900-87932980 0.00011 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGAGTCA width=8 seqs=22 chr2:26578497-26578577 ( 64) ATGAGTCA 1 chr11:107711672-10771175 ( 4) ATGAGTCA 1 chr7:51444370-51444450 ( 68) ATGAGTCA 1 chr7:100861310-100861390 ( 46) ATGAGTCA 1 chr5:34924199-34924279 ( 22) ATGAGTCA 1 chr13:41538247-41538327 ( 17) ATGAGTCA 1 chrX:154564016-154564096 ( 47) ATGAGTCA 1 chr16:55787014-55787094 ( 17) ATGAGTCA 1 chr11:4913374-4913454 ( 26) ATGAGTCA 1 chr10:4983870-4983950 ( 15) GTGAGTCA 1 chr9:75764530-75764610 ( 64) GTGAGTCA 1 chr15:90708982-90709062 ( 32) GTGAGTCA 1 chr1:7907851-7907931 ( 47) ATGACTCA 1 chr1:78227876-78227956 ( 46) CTGAGTCA 1 chr1:202928468-202928548 ( 60) GTGACTCA 1 chr11:46258838-46258918 ( 1) GTGACTCA 1 chr2:86221340-86221420 ( 3) ATGAGACA 1 chr17:46438276-46438356 ( 15) ATGAGACA 1 chr2:238349549-238349629 ( 29) ATGAGACA 1 chr2:62531968-62532048 ( 65) CTGACTCA 1 chr11:94877593-94877673 ( 45) CTGACTCA 1 chr4:87932900-87932980 ( 35) CTGACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 3.3e+000 111 -29 -7 -1110 -1110 -1110 -1110 192 -1110 -1110 207 -1110 187 -1110 -1110 -1110 -1110 29 161 -1110 -101 -1110 -1110 170 -1110 217 -1110 -1110 187 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.3e+000 0.590909 0.181818 0.227273 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.136364 0.000000 0.000000 0.863636 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAGTCA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]TGA[GC]TCA -------------------------------------------------------------------------------- Time 11.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCTGGA MEME-4 width = 8 sites = 37 llr = 298 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 22::32:a pos.-specific C 21:a:::: probability G :::::8a: matrix T 58a:7::: bits 2.2 * * 2.0 * ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** *** Entropy 1.1 ******* (11.6 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTGGA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:18100397-18100477 67 1.71e-05 ATTCTAGACA TTTCTGGA GCCTTT chr20:30944942-30945022 31 1.71e-05 TCTAGAAATG TTTCTGGA CAACGACTGA chr11:107272053-10727213 41 1.71e-05 tgcagcaaag tttctgga tacaagatta chrX:38499155-38499235 41 1.71e-05 TAGATTCTTC TTTCTGGA TTCTTCTAGA chr1:924402-924482 54 1.71e-05 GGGTTGATTG TTTCTGGA GTTCGTGGTT chr10:75823154-75823234 11 1.71e-05 ggccacattc tttctgga aactctagaa chr20:56041195-56041275 26 1.71e-05 cctgggtttc tttctgga gtcctttctg chr6:44215506-44215586 71 4.91e-05 GTTCTGGAAG CTTCTGGA TT chr20:45802647-45802727 27 4.91e-05 AGTCTAGAGA ATTCTGGA GTTCTCTAGA chr1:78227876-78227956 7 4.91e-05 TCACTG ATTCTGGA GTAGAATTCT chr11:134665575-13466565 63 4.91e-05 GGAGTATTAT CTTCTGGA GGGGGAGTAT chr4:25308433-25308513 38 4.91e-05 AAGcctttag cttctgga gacctcaggc chr19:14765757-14765837 56 6.67e-05 CGTTTTGGAT TTTCAGGA CTTTTTGTTC chr9:119079944-119080024 67 6.67e-05 ATTCATGATT TTTCAGGA TTCTTA chr2:10548554-10548634 11 6.67e-05 ATGCAACAGC TTTCAGGA AGGCCTCCAG chr12:7014757-7014837 23 6.67e-05 ACTCCAGAGC TTTCAGGA GGGAAGAAAG chr1:36253278-36253358 40 6.67e-05 atctagaacc tttcagga gtctggcagg chr3:69261654-69261734 18 8.64e-05 TTCTGACCCT TTTCTAGA CTCTGGAATG chr12:112677905-11267798 14 1.04e-04 AACTCTAGAG TATCTGGA Tgaatccaga chr1:224007769-224007849 66 1.04e-04 gcaatgacag tatctgga gacagag chr2:169907464-169907544 67 1.37e-04 tatctagaag cttcagga tgtgat chr9:131953632-131953712 72 1.37e-04 tatctgGATG CTTCAGGA A chr5:34924199-34924279 41 1.37e-04 ACAGTGACTC ATTCAGGA GAAAAGAGGA chr22:27031230-27031310 59 1.74e-04 AACAAGGACG CTTCTAGA TCATCAAGTC chr10:4053748-4053828 34 1.74e-04 agaatctatg attctaga tctgatctag chr18:57528452-57528532 73 1.74e-04 AAATGAGGTC ATTCTAGA chr19:3262526-3262606 46 1.74e-04 GGTCTAGAAT ATTCTAGA CCCAGGGTCT chr8:37447905-37447985 28 1.74e-04 CTAGAAAGAG CTTCTAGA TAATACTTCA chr3:37270287-37270367 19 2.21e-04 AATCGAGGTG TCTCTGGA GTTTTCTGGA chr1:12040043-12040123 20 2.21e-04 ACAGAATGCA AATCTGGA TTCCAGAGCT chr11:65464774-65464854 32 2.21e-04 ATCTAGAGCC TCTCTGGA TCATTCCAGC chr8:77912272-77912352 33 2.21e-04 TTCCTAGCCG AATCTGGA TTACCAAGGC chr17:33380379-33380459 10 2.21e-04 taacaaaga aatctgga aaaaTCTAGA chr10:97026505-97026585 5 2.42e-04 AATC TTTCAAGA ATGCATCTGG chr7:50423950-50424030 24 2.60e-04 CTTCTAGAAC TATCAGGA ACTTCTGGAT chr17:14209308-14209388 6 2.75e-04 agatc gttctgga ccattctgGA chr1:181998334-181998414 60 3.76e-04 gctttatttc ttgctgga ctactctatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18100397-18100477 1.7e-05 66_[+4]_6 chr20:30944942-30945022 1.7e-05 30_[+4]_42 chr11:107272053-10727213 1.7e-05 40_[+4]_32 chrX:38499155-38499235 1.7e-05 40_[+4]_32 chr1:924402-924482 1.7e-05 53_[+4]_19 chr10:75823154-75823234 1.7e-05 10_[+4]_62 chr20:56041195-56041275 1.7e-05 25_[+4]_47 chr6:44215506-44215586 4.9e-05 70_[+4]_2 chr20:45802647-45802727 4.9e-05 26_[+4]_46 chr1:78227876-78227956 4.9e-05 6_[+4]_66 chr11:134665575-13466565 4.9e-05 62_[+4]_10 chr4:25308433-25308513 4.9e-05 37_[+4]_35 chr19:14765757-14765837 6.7e-05 55_[+4]_17 chr9:119079944-119080024 6.7e-05 66_[+4]_6 chr2:10548554-10548634 6.7e-05 10_[+4]_62 chr12:7014757-7014837 6.7e-05 22_[+4]_50 chr1:36253278-36253358 6.7e-05 39_[+4]_33 chr3:69261654-69261734 8.6e-05 17_[+4]_55 chr12:112677905-11267798 0.0001 13_[+4]_59 chr1:224007769-224007849 0.0001 65_[+4]_7 chr2:169907464-169907544 0.00014 66_[+4]_6 chr9:131953632-131953712 0.00014 71_[+4]_1 chr5:34924199-34924279 0.00014 40_[+4]_32 chr22:27031230-27031310 0.00017 58_[+4]_14 chr10:4053748-4053828 0.00017 33_[+4]_39 chr18:57528452-57528532 0.00017 72_[+4] chr19:3262526-3262606 0.00017 45_[+4]_27 chr8:37447905-37447985 0.00017 27_[+4]_45 chr3:37270287-37270367 0.00022 18_[+4]_54 chr1:12040043-12040123 0.00022 19_[+4]_53 chr11:65464774-65464854 0.00022 31_[+4]_41 chr8:77912272-77912352 0.00022 32_[+4]_40 chr17:33380379-33380459 0.00022 9_[+4]_63 chr10:97026505-97026585 0.00024 4_[+4]_68 chr7:50423950-50424030 0.00026 23_[+4]_49 chr17:14209308-14209388 0.00028 5_[+4]_67 chr1:181998334-181998414 0.00038 59_[+4]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTGGA width=8 seqs=37 chr19:18100397-18100477 ( 67) TTTCTGGA 1 chr20:30944942-30945022 ( 31) TTTCTGGA 1 chr11:107272053-10727213 ( 41) TTTCTGGA 1 chrX:38499155-38499235 ( 41) TTTCTGGA 1 chr1:924402-924482 ( 54) TTTCTGGA 1 chr10:75823154-75823234 ( 11) TTTCTGGA 1 chr20:56041195-56041275 ( 26) TTTCTGGA 1 chr6:44215506-44215586 ( 71) CTTCTGGA 1 chr20:45802647-45802727 ( 27) ATTCTGGA 1 chr1:78227876-78227956 ( 7) ATTCTGGA 1 chr11:134665575-13466565 ( 63) CTTCTGGA 1 chr4:25308433-25308513 ( 38) CTTCTGGA 1 chr19:14765757-14765837 ( 56) TTTCAGGA 1 chr9:119079944-119080024 ( 67) TTTCAGGA 1 chr2:10548554-10548634 ( 11) TTTCAGGA 1 chr12:7014757-7014837 ( 23) TTTCAGGA 1 chr1:36253278-36253358 ( 40) TTTCAGGA 1 chr3:69261654-69261734 ( 18) TTTCTAGA 1 chr12:112677905-11267798 ( 14) TATCTGGA 1 chr1:224007769-224007849 ( 66) TATCTGGA 1 chr2:169907464-169907544 ( 67) CTTCAGGA 1 chr9:131953632-131953712 ( 72) CTTCAGGA 1 chr5:34924199-34924279 ( 41) ATTCAGGA 1 chr22:27031230-27031310 ( 59) CTTCTAGA 1 chr10:4053748-4053828 ( 34) ATTCTAGA 1 chr18:57528452-57528532 ( 73) ATTCTAGA 1 chr19:3262526-3262606 ( 46) ATTCTAGA 1 chr8:37447905-37447985 ( 28) CTTCTAGA 1 chr3:37270287-37270367 ( 19) TCTCTGGA 1 chr1:12040043-12040123 ( 20) AATCTGGA 1 chr11:65464774-65464854 ( 32) TCTCTGGA 1 chr8:77912272-77912352 ( 33) AATCTGGA 1 chr17:33380379-33380459 ( 10) AATCTGGA 1 chr10:97026505-97026585 ( 5) TTTCAAGA 1 chr7:50423950-50424030 ( 24) TATCAGGA 1 chr17:14209308-14209388 ( 6) GTTCTGGA 1 chr1:181998334-181998414 ( 60) TTGCTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.1086 E= 1.2e+001 -17 -23 -314 103 -76 -204 -1185 156 -1185 -1185 -314 188 -1185 217 -1185 -1185 -2 -1185 -1185 146 -54 -1185 177 -1185 -1185 -1185 207 -1185 187 -1185 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.2e+001 0.243243 0.189189 0.027027 0.540541 0.162162 0.054054 0.000000 0.783784 0.000000 0.000000 0.027027 0.972973 0.000000 1.000000 0.000000 0.000000 0.270270 0.000000 0.000000 0.729730 0.189189 0.000000 0.810811 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTGGA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]TTC[TA]GGA -------------------------------------------------------------------------------- Time 14.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCCWCCC MEME-5 width = 8 sites = 14 llr = 136 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::6::3 pos.-specific C a6aa:aa7 probability G :::::::: matrix T :4::4::: bits 2.2 * ** ** 2.0 * ** ** 1.7 * ** ** 1.5 * ** ** Relative 1.3 * ** *** Entropy 1.1 **** *** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCACCC consensus T T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:38206446-38206526 4 7.51e-06 CTA CCCCACCC AGCCGCTCCC chr11:65464774-65464854 9 7.51e-06 GAGACAGG CCCCACCC CCTTGATCTA chr7:106742727-106742807 58 7.51e-06 tctgggaact ccccaccc cttttctaga chr4:186317584-186317664 66 7.51e-06 GGCCGCGGAG CCCCACCC GCTCCTA chr1:65432472-65432552 59 1.48e-05 CGTAGATTGA CCCCTCCC AGCTCTGGAG chr11:46262585-46262665 43 1.48e-05 ACTCCTCAGA CCCCTCCC TTTTCCAGAA chr9:114951319-114951399 3 2.37e-05 CT CTCCACCC AGGAATAATG chr20:17891652-17891732 58 2.37e-05 tccaggaact ctccaccc tttttctaga chr6:151007102-151007182 73 3.23e-05 GAGCTACTTG CTCCTCCC chr6:168105079-168105159 68 3.23e-05 TCCGGAGAGA CTCCTCCC AGTTC chr12:1704512-1704592 21 5.05e-05 AAACAATGAC CCCCTCCA GTCGGTGTTC chr13:31736085-31736165 49 5.05e-05 CCTCCACCGG CCCCTCCA CGTGCCACTT chr11:71423576-71423656 17 6.15e-05 ttaacggttc ctccacca ttcttagtca chr15:84132006-84132086 55 6.15e-05 gtaatggcat ctccacca atgaactgac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:38206446-38206526 7.5e-06 3_[+5]_69 chr11:65464774-65464854 7.5e-06 8_[+5]_64 chr7:106742727-106742807 7.5e-06 57_[+5]_15 chr4:186317584-186317664 7.5e-06 65_[+5]_7 chr1:65432472-65432552 1.5e-05 58_[+5]_14 chr11:46262585-46262665 1.5e-05 42_[+5]_30 chr9:114951319-114951399 2.4e-05 2_[+5]_70 chr20:17891652-17891732 2.4e-05 57_[+5]_15 chr6:151007102-151007182 3.2e-05 72_[+5] chr6:168105079-168105159 3.2e-05 67_[+5]_5 chr12:1704512-1704592 5.1e-05 20_[+5]_52 chr13:31736085-31736165 5.1e-05 48_[+5]_24 chr11:71423576-71423656 6.1e-05 16_[+5]_56 chr15:84132006-84132086 6.1e-05 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCCWCCC width=8 seqs=14 chr3:38206446-38206526 ( 4) CCCCACCC 1 chr11:65464774-65464854 ( 9) CCCCACCC 1 chr7:106742727-106742807 ( 58) CCCCACCC 1 chr4:186317584-186317664 ( 66) CCCCACCC 1 chr1:65432472-65432552 ( 59) CCCCTCCC 1 chr11:46262585-46262665 ( 43) CCCCTCCC 1 chr9:114951319-114951399 ( 3) CTCCACCC 1 chr20:17891652-17891732 ( 58) CTCCACCC 1 chr6:151007102-151007182 ( 73) CTCCTCCC 1 chr6:168105079-168105159 ( 68) CTCCTCCC 1 chr12:1704512-1704592 ( 21) CCCCTCCA 1 chr13:31736085-31736165 ( 49) CCCCTCCA 1 chr11:71423576-71423656 ( 17) CTCCACCA 1 chr15:84132006-84132086 ( 55) CTCCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 2.1e+002 -1045 217 -1045 -1045 -1045 136 -1045 69 -1045 217 -1045 -1045 -1045 217 -1045 -1045 106 -1045 -1045 69 -1045 217 -1045 -1045 -1045 217 -1045 -1045 6 168 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.1e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWCCC MEME-5 regular expression -------------------------------------------------------------------------------- C[CT]CC[AT]CC[CA] -------------------------------------------------------------------------------- Time 17.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:120678031-120678111 6.39e-06 43_[+1(2.03e-05)]_2_[+4(1.71e-05)]_\ 19 chr17:33380379-33380459 3.18e-04 11_[+2(9.23e-05)]_2_[+2(2.10e-05)]_\ 51 chr4:25308433-25308513 7.00e-05 12_[+2(3.93e-05)]_1_[+1(2.03e-05)]_\ 8_[+4(4.91e-05)]_35 chr20:56041195-56041275 1.68e-04 25_[+4(1.71e-05)]_4_[+4(1.71e-05)]_\ 4_[+1(3.80e-05)]_23 chr10:75823154-75823234 7.84e-06 10_[+4(1.71e-05)]_3_[+2(2.10e-05)]_\ 27_[+1(3.80e-05)]_16 chr11:47299814-47299894 5.04e-04 80 chr19:49253004-49253084 7.17e-04 11_[+2(7.40e-05)]_61 chr1:36253278-36253358 1.19e-04 12_[+1(8.76e-05)]_10_[+2(5.64e-05)]_\ 1_[+4(6.67e-05)]_33 chr22:50179861-50179941 4.88e-04 25_[+2(7.40e-05)]_47 chr11:134665575-13466565 1.98e-03 20_[+4(4.91e-05)]_34_[+4(4.91e-05)]_\ 10 chr16:81131374-81131454 6.69e-04 34_[+2(7.40e-05)]_38 chr17:17640039-17640119 8.69e-04 43_[+4(1.71e-05)]_29 chr8:27220303-27220383 5.19e-04 12_[+2(5.64e-05)]_15_[+2(5.64e-05)]_\ 15_[+2(5.64e-05)]_14 chr3:50687594-50687674 1.37e-04 20_[+2(3.93e-05)]_2_[+2(3.93e-05)]_\ 42 chr12:124710428-12471050 1.17e-04 7_[+2(5.64e-05)]_10_[+2(2.10e-05)]_\ 20_[+2(2.10e-05)]_19 chr3:186254753-186254833 2.03e-03 9_[+4(1.71e-05)]_63 chr2:238349549-238349629 4.85e-04 4_[+2(7.40e-05)]_9_[+2(7.40e-05)]_\ 26_[+2(7.40e-05)]_9_[+2(7.40e-05)] chr3:81793638-81793718 1.93e-06 9_[+4(1.71e-05)]_63 chr12:53038947-53039027 7.81e-04 13_[+5(7.21e-05)]_59 chr6:168105079-168105159 1.03e-03 4_[+5(3.23e-05)]_13_[+5(3.23e-05)]_\ 13_[+5(3.23e-05)]_13_[+5(3.23e-05)]_5 chr1:39255596-39255676 1.18e-02 44_[+2(2.10e-05)]_28 chr3:13620701-13620781 1.89e-05 56_[+2(2.10e-05)]_1_[+1(2.03e-05)]_\ 7 chr1:7907851-7907931 9.99e-04 46_[+3(5.12e-05)]_26 chr10:11648181-11648261 1.80e-03 80 chr15:90708982-90709062 7.14e-06 14_[+4(1.71e-05)]_9_[+3(3.41e-05)]_\ 41 chr19:49253212-49253292 1.58e-04 39_[+1(2.03e-05)]_12_[+2(7.40e-05)]_\ 13 chr9:90427868-90427948 6.92e-05 20_[+1(2.03e-05)]_27_[+2(7.40e-05)]_\ 17 chr8:41892987-41893067 3.62e-05 15_[+2(2.10e-05)]_57 chr20:60841496-60841576 9.29e-03 80 chr6:16891448-16891528 8.16e-01 80 chr1:924402-924482 3.82e-04 7_[+4(1.71e-05)]_16_[+1(3.80e-05)]_\ 14_[+4(1.71e-05)]_19 chr11:4913374-4913454 1.60e-07 25_[+3(1.82e-05)]_6_[+1(2.03e-05)]_\ 33 chr1:224007769-224007849 2.68e-04 80 chr21:40554840-40554920 2.62e-03 24_[+2(7.40e-05)]_3_[+2(7.40e-05)]_\ 3_[+2(7.40e-05)]_26 chr13:60042684-60042764 1.60e-03 80 chr12:7014757-7014837 8.07e-05 22_[+4(6.67e-05)]_27_[+2(3.93e-05)]_\ 15 chr2:10447750-10447830 6.81e-03 80 chr8:37447905-37447985 1.56e-04 16_[+2(2.10e-05)]_45_[+2(2.10e-05)]_\ 3 chr19:49471746-49471826 2.59e-02 63_[+2(7.40e-05)]_9 chr11:44799926-44800006 1.32e-03 52_[+2(9.23e-05)]_20 chr1:78470510-78470590 9.40e-05 14_[+1(2.03e-05)]_31_[+2(3.93e-05)]_\ 19 chrX:38499155-38499235 2.58e-06 26_[+4(8.64e-05)]_6_[+4(1.71e-05)]_\ 3_[+1(2.03e-05)]_21 chr1:78227876-78227956 6.71e-06 6_[+4(4.91e-05)]_6_[+1(3.80e-05)]_\ 17_[+3(6.60e-05)]_5_[+4(4.91e-05)]_6_[+1(3.80e-05)] chr15:63683965-63684045 3.98e-04 10_[+2(3.93e-05)]_62 chr11:65187591-65187671 5.61e-05 22_[+4(1.71e-05)]_50 chr2:10548554-10548634 3.99e-04 10_[+4(6.67e-05)]_5_[+2(7.40e-05)]_\ 49 chr15:85590512-85590592 2.47e-04 18_[+1(3.80e-05)]_54 chrX:48448266-48448346 2.78e-01 80 chr17:14209308-14209388 1.07e-03 15_[+4(4.91e-05)]_57 chr9:135983533-135983613 3.36e-03 80 chr16:55787014-55787094 3.63e-05 16_[+3(1.82e-05)]_56 chr13:113808827-11380890 2.40e-03 80 chr11:46262585-46262665 3.04e-06 42_[+5(1.48e-05)]_3_[+2(7.40e-05)]_\ 5_[+2(9.23e-05)]_6 chr19:51337194-51337274 2.77e-03 33_[+4(4.91e-05)]_39 chr16:87887254-87887334 2.21e-04 54_[+4(4.91e-05)]_4_[+4(1.71e-05)]_\ 6 chr1:101281805-101281885 8.62e-05 15_[+5(7.21e-05)]_57 chr19:55695243-55695323 1.06e-03 60_[+4(4.91e-05)]_12 chr2:75937559-75937639 1.49e-04 10_[+4(4.91e-05)]_6_[+4(1.71e-05)]_\ 48 chr7:8857229-8857309 1.89e-03 22_[+2(7.40e-05)]_50 chr5:130709146-130709226 2.63e-04 20_[+1(3.80e-05)]_52 chr19:6829106-6829186 4.16e-02 80 chr6:151007102-151007182 8.07e-07 47_[+1(2.03e-05)]_2_[+1(3.80e-05)]_\ 7_[+5(3.23e-05)] chr6:36087142-36087222 7.87e-05 43_[+1(2.03e-05)]_2_[+1(2.03e-05)]_\ 19 chr3:71545412-71545492 1.23e-04 34_[+1(2.03e-05)]_38 chr7:106741441-106741521 1.76e-04 10_[+4(1.71e-05)]_62 chr7:50423950-50424030 9.46e-05 14_[+1(2.03e-05)]_10_[+4(4.91e-05)]_\ 40 chr5:149012131-149012211 7.19e-04 80 chr8:77912272-77912352 1.98e-03 5_[+2(9.23e-05)]_67 chr13:31736085-31736165 2.66e-04 48_[+5(5.05e-05)]_24 chr19:48167548-48167628 5.07e-05 53_[+4(1.71e-05)]_19 chr19:5165016-5165096 9.54e-01 80 chr1:182365873-182365953 1.20e-03 20_[+4(1.71e-05)]_22_[+4(4.91e-05)]_\ 22 chr3:196249716-196249796 3.04e-03 32_[+2(7.40e-05)]_40 chr22:25103486-25103566 3.29e-02 80 chr10:3710586-3710666 2.90e-04 22_[+4(1.71e-05)]_50 chr9:75764530-75764610 1.05e-06 43_[+1(2.03e-05)]_12_[+3(3.41e-05)]_\ 9 chr10:134893-134973 8.91e-04 5_[+2(3.93e-05)]_12_[+2(3.93e-05)]_\ 12_[+2(3.93e-05)]_12_[+2(3.93e-05)]_7 chr12:1704512-1704592 4.11e-07 20_[+5(5.05e-05)]_7_[+1(2.03e-05)]_\ 2_[+1(2.03e-05)]_27 chrX:154564016-154564096 2.78e-04 46_[+3(1.82e-05)]_26 chr1:149982914-149982994 4.98e-01 80 chr8:85980999-85981079 7.31e-02 80 chr1:118153842-118153922 1.48e-02 80 chr9:19748928-19749008 4.81e-04 38_[+1(8.76e-05)]_34 chr9:135199959-135200039 1.67e-03 16_[+2(7.40e-05)]_56 chr10:97026505-97026585 1.80e-03 80 chr14:25517614-25517694 1.31e-04 23_[+1(5.51e-05)]_34_[+2(2.10e-05)]_\ 7 chr13:41538247-41538327 1.96e-06 16_[+3(1.82e-05)]_15_[+1(5.51e-05)]_\ 19_[+1(3.80e-05)]_6 chr18:75707713-75707793 1.33e-03 49_[+1(7.27e-05)]_23 chr10:18871877-18871957 8.04e-03 80 chr9:138693061-138693141 6.12e-05 34_[+4(1.71e-05)]_14_[+2(3.93e-05)]_\ 16 chr12:76175487-76175567 3.05e-06 20_[+2(7.40e-05)]_38_[+1(2.03e-05)]_\ 6 chr19:6601755-6601835 2.07e-01 80 chr20:30586168-30586248 1.02e-03 53_[+1(3.80e-05)]_19 chr1:202928266-202928346 8.99e-01 80 chr3:44564094-44564174 2.18e-01 80 chr12:9950745-9950825 3.60e-01 80 chr13:31735054-31735134 1.69e-03 80 chr20:45802647-45802727 1.43e-05 26_[+4(4.91e-05)]_3_[+1(5.51e-05)]_\ 35 chr3:136618697-136618777 5.00e-04 53_[+4(1.71e-05)]_19 chr12:125596082-12559616 4.19e-04 37_[+1(8.76e-05)]_35 chr5:43212747-43212827 1.65e-01 80 chr5:34924199-34924279 8.22e-07 21_[+3(1.82e-05)]_4_[+3(8.09e-05)]_\ 23_[+2(2.10e-05)]_8 chr21:35406857-35406937 2.49e-02 80 chr1:68368599-68368679 1.78e-04 7_[+2(9.23e-05)]_32_[+4(1.71e-05)]_\ 25 chr4:87932900-87932980 1.35e-03 80 chr7:100861310-100861390 1.17e-01 45_[+3(1.82e-05)]_27 chr19:21776007-21776087 2.29e-01 80 chr8:61975112-61975192 9.91e-01 80 chr1:44020243-44020323 6.74e-04 21_[+4(1.71e-05)]_51 chr3:69261654-69261734 1.92e-03 17_[+4(8.64e-05)]_55 chr3:98312644-98312724 9.46e-01 80 chr3:185694808-185694888 6.64e-05 63_[+4(1.71e-05)]_9 chr11:46258838-46258918 1.58e-04 [+3(8.09e-05)]_72 chr1:118107537-118107617 8.77e-03 80 chr16:81130442-81130522 3.91e-04 60_[+4(1.71e-05)]_12 chr1:62978843-62978923 5.35e-04 12_[+1(3.80e-05)]_6_[+1(3.80e-05)]_\ 6_[+1(3.80e-05)]_6_[+1(3.80e-05)]_6_[+1(3.80e-05)]_4 chr19:3262526-3262606 1.69e-03 80 chr5:39399717-39399797 1.36e-03 34_[+4(4.91e-05)]_38 chr3:130569239-130569319 2.48e-01 80 chr11:107272053-10727213 4.02e-05 [+2(7.40e-05)]_2_[+1(2.03e-05)]_22_\ [+4(1.71e-05)]_32 chr10:4983870-4983950 2.65e-04 14_[+3(3.41e-05)]_58 chr11:94877593-94877673 3.09e-04 80 chr9:93578118-93578198 5.08e-04 58_[+1(3.80e-05)]_14 chr12:30685309-30685389 6.42e-05 37_[+1(3.80e-05)]_35 chr1:41575469-41575549 1.01e-02 80 chr11:117689075-11768915 6.36e-05 48_[+1(2.03e-05)]_2_[+1(2.03e-05)]_\ 14 chr14:31500865-31500945 1.50e-04 3_[+1(2.03e-05)]_69 chr17:32258287-32258367 9.27e-01 80 chr19:51338514-51338594 1.04e-04 8_[+1(2.03e-05)]_64 chr1:65432472-65432552 9.79e-05 58_[+5(1.48e-05)]_14 chr4:186317584-186317664 5.73e-02 65_[+5(7.51e-06)]_7 chr6:44215506-44215586 8.05e-06 8_[+1(7.27e-05)]_45_[+1(7.27e-05)]_\ 1_[+4(4.91e-05)]_2 chr10:74147067-74147147 5.72e-04 57_[+2(9.23e-05)]_15 chr6:35311680-35311760 7.84e-03 27_[+2(7.40e-05)]_45 chr9:108438690-108438770 1.21e-01 80 chr11:63953494-63953574 7.68e-01 80 chr11:134665775-13466585 2.40e-04 22_[+1(3.80e-05)]_37_[+4(1.71e-05)]_\ 5 chr20:23094860-23094940 3.29e-05 28_[+2(3.93e-05)]_3_[+1(7.27e-05)]_\ 33 chr11:65261302-65261382 1.04e-04 1_[+1(3.80e-05)]_3_[+2(2.10e-05)]_\ 60 chr1:110089041-110089121 9.80e-01 80 chr1:26827789-26827869 8.91e-05 53_[+1(3.80e-05)]_19 chr1:229887602-229887682 2.95e-04 43_[+1(5.51e-05)]_5_[+1(2.03e-05)]_\ 16 chr4:80131611-80131691 3.72e-04 1_[+4(4.91e-05)]_71 chr1:113760546-113760626 4.00e-04 35_[+4(4.91e-05)]_37 chr20:44547097-44547177 3.48e-05 66_[+1(2.03e-05)]_6 chr5:96519118-96519198 2.02e-01 80 chr9:119079944-119080024 1.33e-04 20_[+1(5.51e-05)]_38_[+4(6.67e-05)]_\ 6 chr3:81792709-81792789 3.63e-01 80 chr18:57528452-57528532 9.06e-03 35_[+4(1.71e-05)]_37 chr1:193091539-193091619 4.64e-03 56_[+1(8.76e-05)]_16 chr1:54520094-54520174 6.75e-04 56_[+4(4.91e-05)]_16 chr1:46764151-46764231 4.11e-04 18_[+2(3.93e-05)]_54 chr9:78977695-78977775 8.03e-01 80 chr20:17891652-17891732 3.22e-08 57_[+5(2.37e-05)]_3_[+1(2.03e-05)]_\ 4 chr6:10402029-10402109 6.19e-03 80 chr6:38764397-38764477 9.90e-01 80 chr10:4053748-4053828 2.22e-04 19_[+1(2.03e-05)]_53 chr17:56494867-56494947 2.98e-04 11_[+4(4.91e-05)]_61 chr16:1325112-1325192 3.36e-05 25_[+2(2.10e-05)]_25_[+2(2.10e-05)]_\ 14 chr10:25351525-25351605 5.70e-01 80 chr19:14638405-14638485 1.48e-03 80 chr17:60758910-60758990 5.15e-04 58_[+4(1.71e-05)]_14 chr20:30944942-30945022 2.58e-05 20_[+2(2.10e-05)]_2_[+4(1.71e-05)]_\ 42 chr6:28675741-28675821 1.20e-02 12_[+2(7.40e-05)]_60 chr22:27031230-27031310 7.97e-04 43_[+2(5.64e-05)]_29 chr12:122521123-12252120 1.54e-04 66_[+4(1.71e-05)]_6 chr17:46438276-46438356 9.36e-05 14_[+3(9.98e-05)]_58 chr7:101861028-101861108 1.88e-02 80 chr5:138883640-138883720 2.29e-01 80 chr19:46706546-46706626 5.00e-03 80 chr3:65486218-65486298 5.88e-03 80 chr17:80416051-80416131 6.61e-01 80 chr3:87845663-87845743 1.22e-03 22_[+1(3.80e-05)]_50 chr1:156711242-156711322 2.14e-04 69_[+1(3.80e-05)]_3 chr15:60973741-60973821 4.16e-05 12_[+1(2.03e-05)]_60 chr3:129118395-129118475 9.49e-01 80 chr1:19786363-19786443 2.73e-01 80 chr1:11990009-11990089 6.77e-03 80 chr7:106742727-106742807 1.49e-07 57_[+5(7.51e-06)]_3_[+1(2.03e-05)]_\ 4 chr1:202928468-202928548 2.65e-05 42_[+1(3.80e-05)]_9_[+3(8.09e-05)]_\ 13 chr4:109571564-109571644 8.77e-01 80 chr5:124060898-124060978 6.64e-01 80 chr1:113369030-113369110 4.01e-01 80 chr16:1325324-1325404 3.77e-04 5_[+2(2.10e-05)]_25_[+2(2.10e-05)]_\ 25_[+2(2.10e-05)]_1 chr9:114951319-114951399 8.73e-05 2_[+5(2.37e-05)]_46_[+2(7.40e-05)]_\ 16 chr11:65464774-65464854 4.39e-06 8_[+5(7.51e-06)]_33_[+4(8.64e-05)]_\ 23 chr3:61237478-61237558 4.32e-05 33_[+4(1.71e-05)]_39 chr8:38708619-38708699 9.45e-02 80 chr15:31555671-31555751 7.12e-04 26_[+1(8.76e-05)]_22_[+2(9.23e-05)]_\ 16 chr3:167791999-167792079 2.63e-04 33_[+4(4.91e-05)]_39 chr1:12040043-12040123 5.43e-03 80 chr1:100274359-100274439 9.84e-01 80 chr6:119578331-119578411 6.15e-01 80 chr1:160548321-160548401 4.66e-03 57_[+2(3.93e-05)]_15 chr17:75424504-75424584 4.07e-05 9_[+4(4.91e-05)]_17_[+2(7.40e-05)]_\ 38 chr6:143386312-143386392 3.03e-03 80 chr3:37270287-37270367 5.62e-04 28_[+4(1.71e-05)]_44 chr5:149522472-149522552 1.60e-01 80 chr19:14765757-14765837 1.72e-03 55_[+4(6.67e-05)]_17 chr7:106183114-106183194 9.92e-02 80 chr15:93352383-93352463 9.75e-01 80 chr19:597604-597684 3.64e-01 80 chr6:120061063-120061143 1.90e-04 17_[+2(7.40e-05)]_21_[+4(4.91e-05)]_\ 26 chr7:101557356-101557436 3.00e-01 80 chr12:112677905-11267798 5.69e-04 5_[+1(8.76e-05)]_67 chr16:15670519-15670599 4.04e-03 45_[+1(8.76e-05)]_27 chr15:84132006-84132086 1.02e-02 54_[+5(6.15e-05)]_18 chr7:111126716-111126796 3.17e-01 80 chr16:77792570-77792650 8.11e-03 80 chr3:38206446-38206526 9.02e-03 3_[+5(7.51e-06)]_69 chr1:25022085-25022165 5.92e-01 80 chr7:51444370-51444450 9.25e-04 67_[+3(1.82e-05)]_5 chr9:131953632-131953712 4.08e-04 80 chr3:170541493-170541573 9.00e-01 80 chr5:173345015-173345095 9.19e-01 80 chr6:2846699-2846779 1.10e-03 80 chr2:174219402-174219482 5.30e-01 80 chr1:183447291-183447371 1.33e-04 44_[+1(2.03e-05)]_28 chr1:28994888-28994968 5.13e-01 80 chr1:181998334-181998414 3.66e-04 9_[+1(8.76e-05)]_2_[+1(2.03e-05)]_\ 53 chr4:88343793-88343873 6.19e-02 80 chr3:43728355-43728435 2.72e-01 80 chr2:198364744-198364824 2.23e-03 58_[+2(7.40e-05)]_14 chr19:18100397-18100477 9.18e-05 37_[+1(3.80e-05)]_1_[+4(1.71e-05)]_\ 12_[+4(1.71e-05)]_6 chr10:121643893-12164397 6.86e-01 80 chr2:62531968-62532048 1.87e-01 80 chr1:161067459-161067539 1.00e+00 80 chr6:28948723-28948803 3.05e-03 80 chr11:107711672-10771175 5.99e-04 3_[+3(1.82e-05)]_69 chr5:162853367-162853447 8.41e-04 36_[+2(7.40e-05)]_36 chr18:55454660-55454740 1.94e-03 17_[+2(5.64e-05)]_18_[+2(5.64e-05)]_\ 18_[+2(5.64e-05)]_3 chr14:31699049-31699129 7.93e-01 80 chr11:98420489-98420569 1.56e-06 21_[+5(7.21e-05)]_36_[+4(1.71e-05)]_\ 7 chr3:16346233-16346313 1.80e-03 80 chr9:19161823-19161903 1.45e-03 80 chr2:169907464-169907544 8.84e-05 58_[+2(3.93e-05)]_14 chr10:51563638-51563718 9.21e-01 80 chr11:71423576-71423656 1.70e-05 16_[+5(6.15e-05)]_56 chr3:196254730-196254810 7.84e-02 80 chr20:57596238-57596318 4.29e-03 80 chr2:26578497-26578577 2.51e-02 63_[+3(1.82e-05)]_9 chr7:139676996-139677076 9.14e-01 80 chr16:87808691-87808771 8.11e-02 80 chr1:150135522-150135602 3.67e-04 12_[+1(8.76e-05)]_60 chr12:122186858-12218693 3.45e-04 80 chr12:50956908-50956988 9.64e-01 80 chr1:109757538-109757618 7.27e-01 80 chr2:197265054-197265134 4.82e-04 56_[+2(9.23e-05)]_16 chr2:86221340-86221420 3.97e-06 2_[+3(9.98e-05)]_57_[+2(2.10e-05)]_\ 5 chr3:130611745-130611825 6.21e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************