******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ARID1B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr8:126193321-126193401 1.0000 80 chr14:35122440-35122520 1.0000 80 chr19:4247673-4247753 1.0000 80 chr11:107436854-10743693 1.0000 80 chr4:129566595-129566675 1.0000 80 chr5:153121745-153121825 1.0000 80 chr17:62919222-62919302 1.0000 80 chr4:144940557-144940637 1.0000 80 chr3:32115910-32115990 1.0000 80 chr1:120809572-120809652 1.0000 80 chr9:102907608-102907688 1.0000 80 chr8:38068324-38068404 1.0000 80 chr1:90169244-90169324 1.0000 80 chr1:67420694-67420774 1.0000 80 chr9:125209208-125209288 1.0000 80 chr1:117300832-117300912 1.0000 80 chr1:35602536-35602616 1.0000 80 chr17:60311533-60311613 1.0000 80 chr5:70681217-70681297 1.0000 80 chr6:159303109-159303189 1.0000 80 chr2:38591483-38591563 1.0000 80 chr18:8913752-8913832 1.0000 80 chr7:92515501-92515581 1.0000 80 chr1:249183761-249183841 1.0000 80 chr4:144826768-144826848 1.0000 80 chr1:153031963-153032043 1.0000 80 chr1:87901336-87901416 1.0000 80 chr1:209819347-209819427 1.0000 80 chr2:64479902-64479982 1.0000 80 chr7:64405508-64405588 1.0000 80 chr11:5181583-5181663 1.0000 80 chr5:176421980-176422060 1.0000 80 chr20:39679412-39679492 1.0000 80 chr6:35993462-35993542 1.0000 80 chr15:50039601-50039681 1.0000 80 chr6:27741806-27741886 1.0000 80 chr2:218706942-218707022 1.0000 80 chr7:29686807-29686887 1.0000 80 chr6:28514936-28515016 1.0000 80 chr18:968402-968482 1.0000 80 chr2:191136649-191136729 1.0000 80 chr11:43974075-43974155 1.0000 80 chr3:179093040-179093120 1.0000 80 chr7:104607700-104607780 1.0000 80 chr2:191049368-191049448 1.0000 80 chr7:88319278-88319358 1.0000 80 chrX:10838261-10838341 1.0000 80 chr1:25606333-25606413 1.0000 80 chr3:152949178-152949258 1.0000 80 chr1:25739925-25740005 1.0000 80 chr6:161223176-161223256 1.0000 80 chr22:44365573-44365653 1.0000 80 chr3:50577062-50577142 1.0000 80 chr1:6489891-6489971 1.0000 80 chr8:100150244-100150324 1.0000 80 chr1:57693107-57693187 1.0000 80 chr2:169990971-169991051 1.0000 80 chr6:38764356-38764436 1.0000 80 chr5:112378696-112378776 1.0000 80 chr6:16263841-16263921 1.0000 80 chr19:10727895-10727975 1.0000 80 chr4:57255923-57256003 1.0000 80 chrX:49100809-49100889 1.0000 80 chr20:9129840-9129920 1.0000 80 chr8:37939618-37939698 1.0000 80 chr1:38989340-38989420 1.0000 80 chr9:108409942-108410022 1.0000 80 chr6:44102157-44102237 1.0000 80 chrX:65382313-65382393 1.0000 80 chr2:170870534-170870614 1.0000 80 chr19:8098401-8098481 1.0000 80 chr1:202913665-202913745 1.0000 80 chr22:32022698-32022778 1.0000 80 chr6:20458740-20458820 1.0000 80 chr2:219287344-219287424 1.0000 80 chr16:58010486-58010566 1.0000 80 chr8:37949366-37949446 1.0000 80 chr22:37948842-37948922 1.0000 80 chr14:91040258-91040338 1.0000 80 chr14:20645717-20645797 1.0000 80 chr2:65233783-65233863 1.0000 80 chr7:135348924-135349004 1.0000 80 chr9:136159280-136159360 1.0000 80 chr1:18861049-18861129 1.0000 80 chr16:54482135-54482215 1.0000 80 chr4:8338331-8338411 1.0000 80 chr1:53079860-53079940 1.0000 80 chr1:41405194-41405274 1.0000 80 chr9:111896504-111896584 1.0000 80 chr3:195805981-195806061 1.0000 80 chr11:44291726-44291806 1.0000 80 chr8:21818128-21818208 1.0000 80 chr19:907354-907434 1.0000 80 chr15:40189616-40189696 1.0000 80 chr6:45262233-45262313 1.0000 80 chr1:28851660-28851740 1.0000 80 chr13:19398947-19399027 1.0000 80 chr7:107720769-107720849 1.0000 80 chr3:141567995-141568075 1.0000 80 chr15:35459076-35459156 1.0000 80 chr1:66004533-66004613 1.0000 80 chr8:93107690-93107770 1.0000 80 chr20:37081806-37081886 1.0000 80 chr17:65852238-65852318 1.0000 80 chr12:6874566-6874646 1.0000 80 chr12:92798832-92798912 1.0000 80 chr1:65783744-65783824 1.0000 80 chr2:149300796-149300876 1.0000 80 chr6:119863394-119863474 1.0000 80 chr18:55250662-55250742 1.0000 80 chr9:34150353-34150433 1.0000 80 chr3:43812277-43812357 1.0000 80 chr11:3986923-3987003 1.0000 80 chr4:69730317-69730397 1.0000 80 chr1:18857625-18857705 1.0000 80 chr1:61514709-61514789 1.0000 80 chr22:26800975-26801055 1.0000 80 chrX:130086527-130086607 1.0000 80 chr2:162029741-162029821 1.0000 80 chr8:126676823-126676903 1.0000 80 chr9:37197244-37197324 1.0000 80 chr7:111078720-111078800 1.0000 80 chr16:56312538-56312618 1.0000 80 chr6:134279189-134279269 1.0000 80 chr1:95645316-95645396 1.0000 80 chr11:9010293-9010373 1.0000 80 chr5:148018817-148018897 1.0000 80 chr1:211395919-211395999 1.0000 80 chr7:90929380-90929460 1.0000 80 chr14:57476389-57476469 1.0000 80 chr9:130188239-130188319 1.0000 80 chr5:149861680-149861760 1.0000 80 chr7:134519777-134519857 1.0000 80 chr19:52051121-52051201 1.0000 80 chr17:75118744-75118824 1.0000 80 chr19:10410317-10410397 1.0000 80 chr8:98790768-98790848 1.0000 80 chr19:21641036-21641116 1.0000 80 chrX:55143166-55143246 1.0000 80 chr17:71470661-71470741 1.0000 80 chr9:251546-251626 1.0000 80 chr12:6748481-6748561 1.0000 80 chr21:33918389-33918469 1.0000 80 chr6:125302791-125302871 1.0000 80 chr1:237077138-237077218 1.0000 80 chr1:25611722-25611802 1.0000 80 chr10:12307955-12308035 1.0000 80 chr10:13446408-13446488 1.0000 80 chr22:28956488-28956568 1.0000 80 chr5:1067947-1068027 1.0000 80 chr2:170521629-170521709 1.0000 80 chr9:110778130-110778210 1.0000 80 chr3:129180858-129180938 1.0000 80 chr19:516726-516806 1.0000 80 chr16:75077153-75077233 1.0000 80 chr8:37724762-37724842 1.0000 80 chr18:6683170-6683250 1.0000 80 chr21:35483101-35483181 1.0000 80 chr17:53894327-53894407 1.0000 80 chr8:96105523-96105603 1.0000 80 chr10:13457784-13457864 1.0000 80 chr8:101776307-101776387 1.0000 80 chr3:16346291-16346371 1.0000 80 chr14:36733974-36734054 1.0000 80 chr5:179982448-179982528 1.0000 80 chr5:148186174-148186254 1.0000 80 chr14:102144518-10214459 1.0000 80 chr4:17672227-17672307 1.0000 80 chr10:26055814-26055894 1.0000 80 chr6:4728376-4728456 1.0000 80 chr8:61242946-61243026 1.0000 80 chr22:22356471-22356551 1.0000 80 chr3:98302739-98302819 1.0000 80 chr2:72770848-72770928 1.0000 80 chr2:17304321-17304401 1.0000 80 chr4:139592836-139592916 1.0000 80 chr11:17208660-17208740 1.0000 80 chr18:3706625-3706705 1.0000 80 chr3:156178166-156178246 1.0000 80 chr7:51444284-51444364 1.0000 80 chr11:102212897-10221297 1.0000 80 chr15:35849817-35849897 1.0000 80 chr11:95276149-95276229 1.0000 80 chr18:6676252-6676332 1.0000 80 chr1:41286694-41286774 1.0000 80 chr5:180209004-180209084 1.0000 80 chr3:130062066-130062146 1.0000 80 chr19:12655329-12655409 1.0000 80 chr9:100705733-100705813 1.0000 80 chr7:2062732-2062812 1.0000 80 chr11:124537660-12453774 1.0000 80 chr20:57596209-57596289 1.0000 80 chr2:152646120-152646200 1.0000 80 chr4:145061886-145061966 1.0000 80 chr7:108178829-108178909 1.0000 80 chr8:99318569-99318649 1.0000 80 chr17:62101709-62101789 1.0000 80 chr5:139597291-139597371 1.0000 80 chr14:81868480-81868560 1.0000 80 chr5:131987928-131988008 1.0000 80 chr1:65696943-65697023 1.0000 80 chr3:125152084-125152164 1.0000 80 chr4:81100937-81101017 1.0000 80 chr3:20064535-20064615 1.0000 80 chrX:47543007-47543087 1.0000 80 chr12:50956916-50956996 1.0000 80 chr3:43719955-43720035 1.0000 80 chr3:31533313-31533393 1.0000 80 chrX:47572291-47572371 1.0000 80 chr1:207693590-207693670 1.0000 80 chr10:66268029-66268109 1.0000 80 chr13:95314708-95314788 1.0000 80 chr9:115185178-115185258 1.0000 80 chr8:11736998-11737078 1.0000 80 chr6:145207963-145208043 1.0000 80 chr6:146870146-146870226 1.0000 80 chr16:25783241-25783321 1.0000 80 chr17:52938583-52938663 1.0000 80 chr11:94833493-94833573 1.0000 80 chr15:91384378-91384458 1.0000 80 chr1:5946036-5946116 1.0000 80 chr22:43579671-43579751 1.0000 80 chr1:143942463-143942543 1.0000 80 chr3:32182563-32182643 1.0000 80 chr2:84178571-84178651 1.0000 80 chr15:50886661-50886741 1.0000 80 chr6:159920214-159920294 1.0000 80 chr14:67885770-67885850 1.0000 80 chr5:34700017-34700097 1.0000 80 chr1:26397037-26397117 1.0000 80 chr19:2161397-2161477 1.0000 80 chr11:125423012-12542309 1.0000 80 chr12:56520685-56520765 1.0000 80 chr2:65249004-65249084 1.0000 80 chr11:10921232-10921312 1.0000 80 chr3:4266847-4266927 1.0000 80 chr1:246741203-246741283 1.0000 80 chr12:7830214-7830294 1.0000 80 chr16:29954798-29954878 1.0000 80 chr10:25782242-25782322 1.0000 80 chr8:86971501-86971581 1.0000 80 chr1:206825547-206825627 1.0000 80 chr1:161136321-161136401 1.0000 80 chr9:123529081-123529161 1.0000 80 chr9:125016676-125016756 1.0000 80 chr7:43026531-43026611 1.0000 80 chr5:75615709-75615789 1.0000 80 chr1:27400857-27400937 1.0000 80 chr10:97185773-97185853 1.0000 80 chr11:76411677-76411757 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ARID1B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ARID1B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.233 G 0.232 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.233 G 0.232 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTTATCWB MEME-1 width = 8 sites = 124 llr = 941 E-value = 7.2e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::9::41 pos.-specific C 6::::a:3 probability G 2::::::3 matrix T 1aa1a:63 bits 2.1 * 1.9 ** ** 1.7 ** ** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ****** (10.9 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:161136321-161136401 51 1.73e-05 GGGTGTGGCC CTTATCTG CACCCAGCAG chr8:96105523-96105603 8 1.73e-05 gaaactt cttatctg aggaatgcag chr17:71470661-71470741 52 1.73e-05 GGCTGCAGCT CTTATCTG TCTCTTGCTA chr19:8098401-8098481 35 1.73e-05 cccgagctgt cttatctg tgttttactg chr9:108409942-108410022 31 1.73e-05 AGGCTGCACT CTTATCTG CTGCCCACAG chrX:10838261-10838341 15 1.73e-05 TGTCCTAAAG CTTATCTG TGCTGGACAC chr1:67420694-67420774 32 1.73e-05 AGTCACACTT CTTATCTG TATATCCAGG chr1:5946036-5946116 6 3.48e-05 ATGAG CTTATCTC TCTCTTGCAG chr6:146870146-146870226 52 3.48e-05 ACCCACTGCA CTTATCTC CTTCCTGCAG chr1:41286694-41286774 11 3.48e-05 TCAGCCCTTC CTTATCTC TCCTCCCCAG chr5:179982448-179982528 45 3.48e-05 GAGACATTTG CTTATCTC ACATATCCTG chr22:28956488-28956568 7 3.48e-05 tcatct cttatctc tcttcacact chr19:10410317-10410397 13 3.48e-05 CTTCCTCCTA CTTATCTC TTCCACCCAG chr1:211395919-211395999 44 3.48e-05 atgccttcct cttatctc aactgcaaag chr1:95645316-95645396 13 3.48e-05 gaagagctgt cttatctc cttctgccac chr9:37197244-37197324 46 3.48e-05 GGAAGCAGCT CTTATCTC TCCAGACCTG chrX:130086527-130086607 67 3.48e-05 tgtggtttgt cttatctc tggcta chr1:18857625-18857705 24 3.48e-05 atgaatcatc cttatctc tgtcatgccc chr15:40189616-40189696 11 3.48e-05 GAGATTAAGA CTTATCTC TCAAACACAC chr8:21818128-21818208 6 3.48e-05 CCATC CTTATCTC ATGCACGCCA chr1:41405194-41405274 68 3.48e-05 ATTGCCCATG CTTATCTC CAGAG chr6:44102157-44102237 3 3.48e-05 CC CTTATCTC CAGAGGCCAG chr2:64479902-64479982 12 3.48e-05 cggctccacc cttatctc cttttgctga chr10:97185773-97185853 6 5.48e-05 TTTGC CTTATCTT TTCCTCCAGC chr5:75615709-75615789 64 5.48e-05 AAGAATCCAG CTTATCTT ACTACTACA chr10:66268029-66268109 25 5.48e-05 AATAGCACTT CTTATCTT TGTTCCGTTG chr18:6676252-6676332 29 5.48e-05 GTCCCTGAGT CTTATCTT TCCTGCCAGC chr11:102212897-10221297 54 5.48e-05 tatgctttgt cttatctt tggttaacag chr3:16346291-16346371 24 5.48e-05 GTTACCCTTT CTTATCTT TGTTGTTGCA chr10:12307955-12308035 58 5.48e-05 CCTGCCAGTT CTTATCTT CCTCTCTCAG chr19:52051121-52051201 21 5.48e-05 aaggaaatca cttatctt ctgacaacaa chr14:57476389-57476469 7 5.48e-05 AGCATG CTTATCTT GCCTAACCAG chr11:9010293-9010373 40 5.48e-05 GTCTCACTCT CTTATCTT TCAGATGCAG chr12:92798832-92798912 42 5.48e-05 CTTCTTCTGC CTTATCTT TGGTCTCCTT chr1:18861049-18861129 71 5.48e-05 ctctctgagt cttatctt tc chr19:10727895-10727975 13 5.48e-05 TGTTCTTCTT CTTATCTT GCAGCATTGT chr18:968402-968482 8 5.48e-05 ATAGGCT CTTATCTT AGCCTTTCCA chr1:249183761-249183841 18 5.48e-05 aaggaaatca cttatctt ctaactacaa chr9:125209208-125209288 37 5.48e-05 aaggaaatca cttatctt ctaacaataa chr5:139597291-139597371 3 7.21e-05 TC CTTATCAG TGCTTTGCAG chr17:62101709-62101789 19 7.21e-05 GTCATCAAAT CTTATCAG ACCTGCCACC chr7:2062732-2062812 11 7.21e-05 tcaacaccct cttatcag aaacggacag chr18:6683170-6683250 58 7.21e-05 TCAATCCAAT CTTATCAG CACTAAACAG chr9:110778130-110778210 22 7.21e-05 ctgccctgtt cttatcag gactttcctt chr2:170521629-170521709 41 7.21e-05 caggagcctt cttatcag cctgtacaga chr2:170870534-170870614 22 7.21e-05 CACAGATGCC CTTATCAG CAGCAACCAG chr22:44365573-44365653 42 7.21e-05 agagatagca cttatcag gcccacgcca chr7:64405508-64405588 41 7.21e-05 ccacacccca cttatcag ctgtgaacat chr7:92515501-92515581 1 7.21e-05 . cttatcag cttaagaagc chr6:159303109-159303189 6 7.21e-05 atggg cttatcag taatgtgaag chr8:38068324-38068404 7 7.21e-05 AACAGG CTTATCAG AAACCTACCA chr5:149861680-149861760 52 8.95e-05 GTCCGTGGAC CTTATCAC ATACAAGGTC chr2:149300796-149300876 29 8.95e-05 ctgagttggg cttatcac ttgaggtcag chr3:195805981-195806061 30 8.95e-05 TTACAAAAAG CTTATCAC TACCACTCCA chr1:25606333-25606413 15 8.95e-05 ACATCCACTT CTTATCAC CCCTGAACAC chr1:153031963-153032043 26 8.95e-05 CAACAGGAGG CTTATCAC ACCAGTGCAG chr8:61242946-61243026 44 1.09e-04 ctgaaccaac cttatcat actagtgcac chr10:13446408-13446488 38 1.09e-04 ATTAAAACTG CTTATCAT CTTAAGTTTT chr5:148018817-148018897 37 1.09e-04 atccaaattc cttatcat agctaaccag chr2:162029741-162029821 3 1.09e-04 AG CTTATCAT GGCACCCTCA chr17:65852238-65852318 16 1.09e-04 ttctgacttt cttatcat ttctctccag chr4:57255923-57256003 49 1.09e-04 ATACAAAGTC CTTATCAT GTTTCCACAC chr1:87901336-87901416 15 1.09e-04 GGCTAGCGTT CTTATCAT AGCACACCAC chr6:159920214-159920294 19 1.47e-04 ccatttcacc cttatcta tagggtgcag chr2:84178571-84178651 50 1.47e-04 GTCTCAGCAC GTTATCTG TAGCACACAG chr8:99318569-99318649 20 1.47e-04 TATTTGTCCT GTTATCTG GATCCACAGC chr19:12655329-12655409 22 1.47e-04 ggtcaatcca gttatctg ccttacacag chr5:180209004-180209084 29 1.47e-04 actcgattat gttatctg tagattccag chr3:129180858-129180938 33 1.47e-04 ttccagttcc cttatcta aaaggagcat chrX:55143166-55143246 6 1.47e-04 tggac cttatcta tactccccag chr11:44291726-44291806 43 1.47e-04 GGAGATGTGG GTTATCTG GGGAAGACAG chr16:54482135-54482215 45 1.47e-04 TCCCTTGGCA GTTATCTG CTCTGACACC chr14:20645717-20645797 32 1.47e-04 gcaactcatg cttatcta tcttgtgacc chr7:29686807-29686887 61 1.47e-04 tggtcactat cttatcta caacctcatg chr20:39679412-39679492 48 1.47e-04 AGACCAGCTT GTTATCTG TCCTAGACAG chr10:25782242-25782322 37 2.24e-04 TCCAGCCAAG TTTATCTC TGCACCACTC chr4:81100937-81101017 31 2.24e-04 cagtgcagga tttatctc ctcagacaaa chr11:124537660-12453774 44 2.24e-04 CTTCTATATC TTTATCTC TTCTAGACAG chr6:4728376-4728456 40 2.24e-04 TGTTACTTCT TTTATCTC TGGTCACACC chr1:237077138-237077218 42 2.24e-04 gattcaaggc tttatctc ctgtcctcac chr9:34150353-34150433 27 2.24e-04 CTTTTGCAGT TTTATCTC CCTTCAGCAG chr1:66004533-66004613 27 2.24e-04 aaatgtgcct tttatctc ttgtgccttt chr3:32115910-32115990 7 2.24e-04 ttactc tttatctc cagaacccag chr14:35122440-35122520 5 2.24e-04 actc tttatctc cagagcccag chr1:206825547-206825627 47 2.61e-04 TTTGCCAGTT GTTATCAG TGTTGAAGAA chr3:32182563-32182643 35 2.61e-04 TACTTTCACC CTTATCAA ACCTGCAAGC chr2:72770848-72770928 4 2.61e-04 GTC CTTATCAA TGCAGTGCAC chr21:33918389-33918469 22 2.61e-04 aagcagacca gttatcag accattacag chr6:119863394-119863474 9 2.61e-04 TGAACTTA GTTATCAG GTGAAGCACA chr1:28851660-28851740 6 2.61e-04 cactg gttatcag aacggaacag chr5:70681217-70681297 11 2.61e-04 ACGATTTCAC GTTATCAG TGCAGTTCGG chr16:25783241-25783321 6 3.01e-04 CTCTT TTTATCTT CTGGTTCCAA chr10:13457784-13457864 27 3.01e-04 GCCCAGCTTA TTTATCTT GTGAGCTTCA chr16:75077153-75077233 61 3.01e-04 CAGACATGGT TTTATCTT TTCAGAAGCT chr5:1067947-1068027 10 3.01e-04 GGGGACCCT GTTATCAC AAGTCAGCAC chr6:134279189-134279269 21 3.01e-04 CAGGCATCTG GTTATCAC TGATGGCAGA chr12:56520685-56520765 51 3.41e-04 CCAGATAAAA TTTATCAG CTGCAGGCCT chr1:65696943-65697023 34 3.41e-04 AATAAATGCC ATTATCTG TATGTTTCAG chr3:43812277-43812357 35 3.41e-04 GCTCGAGTTC TTTATCAG GCTGTGACAG chr2:17304321-17304401 41 4.01e-04 gtcaaccctg gttatcat ggggtgacag chr4:17672227-17672307 58 4.01e-04 Atttctatac attatctc atggatgcat chr11:5181583-5181663 1 4.01e-04 . tttatcac ctgggtgcag chr3:43719955-43720035 4 4.21e-04 tat gttatcta tagattccag chr6:38764356-38764436 12 4.21e-04 aactggttat gttatcta tagattccag chr6:27741806-27741886 44 4.21e-04 cactggttat gttatcta tagtttccag chr18:8913752-8913832 55 4.21e-04 aatcggttat gttatcta tagattacag chr2:65249004-65249084 64 4.84e-04 CCCTGGGGCA CTTTTCTG CTTCCTTCC chr19:21641036-21641116 51 4.84e-04 tgcagataac attatctt agtcctcgca chr8:126676823-126676903 26 4.84e-04 TGTCATTCCT ATTATCTT ATTTACCCAT chr2:191136649-191136729 16 4.84e-04 cacatatgct attatctt ctCACCCaca chr18:55250662-55250742 16 5.25e-04 gcgagtctca cttttctc atctgcaaaa chr20:9129840-9129920 21 5.25e-04 ccagactccc cttttctc cacagcagcc chr3:20064535-20064615 40 5.44e-04 agataataac aTTATCag tgctgaccat chr10:26055814-26055894 4 5.44e-04 GCC ATTATCAG CCGCCAACAG chr20:37081806-37081886 29 5.44e-04 atTCATATCA ATTATCAG TTCtgtgcag chr7:104607700-104607780 45 5.44e-04 GGTTCAGTTG ATTATCAG TATCTTCAGG chr8:11736998-11737078 39 6.04e-04 GATAACCCGG GTTATCAA GTGCTGTCTT chr12:50956916-50956996 59 6.04e-04 CACtttgttt cttttctt cttctgagat chr4:69730317-69730397 37 6.04e-04 gagcacattc cttttctt tctggacaca chr5:176421980-176422060 48 6.04e-04 ttcagatagt gttatcaa ggctctgcca chr11:3986923-3987003 14 7.08e-04 ACTTTTTTCT TTTATCAA ACCATTGCAg chr22:26800975-26801055 11 7.65e-04 TAACAATTTT GTTTTCTG GAATCTGTCA chr12:6748481-6748561 56 8.25e-04 ATGTCAAGGA TTTTTCTG GTAATGGTAG chr9:251546-251626 24 8.25e-04 CGATAGCAGC TTTTTCTG AGATGCGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161136321-161136401 1.7e-05 50_[+1]_22 chr8:96105523-96105603 1.7e-05 7_[+1]_65 chr17:71470661-71470741 1.7e-05 51_[+1]_21 chr19:8098401-8098481 1.7e-05 34_[+1]_38 chr9:108409942-108410022 1.7e-05 30_[+1]_42 chrX:10838261-10838341 1.7e-05 14_[+1]_58 chr1:67420694-67420774 1.7e-05 31_[+1]_41 chr1:5946036-5946116 3.5e-05 5_[+1]_67 chr6:146870146-146870226 3.5e-05 51_[+1]_21 chr1:41286694-41286774 3.5e-05 10_[+1]_62 chr5:179982448-179982528 3.5e-05 44_[+1]_28 chr22:28956488-28956568 3.5e-05 6_[+1]_66 chr19:10410317-10410397 3.5e-05 12_[+1]_60 chr1:211395919-211395999 3.5e-05 43_[+1]_29 chr1:95645316-95645396 3.5e-05 12_[+1]_60 chr9:37197244-37197324 3.5e-05 45_[+1]_27 chrX:130086527-130086607 3.5e-05 66_[+1]_6 chr1:18857625-18857705 3.5e-05 23_[+1]_49 chr15:40189616-40189696 3.5e-05 10_[+1]_62 chr8:21818128-21818208 3.5e-05 5_[+1]_67 chr1:41405194-41405274 3.5e-05 67_[+1]_5 chr6:44102157-44102237 3.5e-05 2_[+1]_70 chr2:64479902-64479982 3.5e-05 11_[+1]_61 chr10:97185773-97185853 5.5e-05 5_[+1]_67 chr5:75615709-75615789 5.5e-05 63_[+1]_9 chr10:66268029-66268109 5.5e-05 24_[+1]_48 chr18:6676252-6676332 5.5e-05 28_[+1]_44 chr11:102212897-10221297 5.5e-05 53_[+1]_19 chr3:16346291-16346371 5.5e-05 23_[+1]_49 chr10:12307955-12308035 5.5e-05 57_[+1]_15 chr19:52051121-52051201 5.5e-05 20_[+1]_52 chr14:57476389-57476469 5.5e-05 6_[+1]_66 chr11:9010293-9010373 5.5e-05 39_[+1]_33 chr12:92798832-92798912 5.5e-05 41_[+1]_31 chr1:18861049-18861129 5.5e-05 70_[+1]_2 chr19:10727895-10727975 5.5e-05 12_[+1]_60 chr18:968402-968482 5.5e-05 7_[+1]_65 chr1:249183761-249183841 5.5e-05 17_[+1]_55 chr9:125209208-125209288 5.5e-05 36_[+1]_36 chr5:139597291-139597371 7.2e-05 2_[+1]_70 chr17:62101709-62101789 7.2e-05 18_[+1]_54 chr7:2062732-2062812 7.2e-05 10_[+1]_62 chr18:6683170-6683250 7.2e-05 57_[+1]_15 chr9:110778130-110778210 7.2e-05 21_[+1]_51 chr2:170521629-170521709 7.2e-05 40_[+1]_32 chr2:170870534-170870614 7.2e-05 21_[+1]_51 chr22:44365573-44365653 7.2e-05 41_[+1]_31 chr7:64405508-64405588 7.2e-05 40_[+1]_32 chr7:92515501-92515581 7.2e-05 [+1]_72 chr6:159303109-159303189 7.2e-05 5_[+1]_67 chr8:38068324-38068404 7.2e-05 6_[+1]_66 chr5:149861680-149861760 8.9e-05 51_[+1]_21 chr2:149300796-149300876 8.9e-05 28_[+1]_44 chr3:195805981-195806061 8.9e-05 29_[+1]_43 chr1:25606333-25606413 8.9e-05 14_[+1]_58 chr1:153031963-153032043 8.9e-05 25_[+1]_47 chr8:61242946-61243026 0.00011 43_[+1]_29 chr10:13446408-13446488 0.00011 37_[+1]_35 chr5:148018817-148018897 0.00011 36_[+1]_36 chr2:162029741-162029821 0.00011 2_[+1]_70 chr17:65852238-65852318 0.00011 15_[+1]_57 chr4:57255923-57256003 0.00011 48_[+1]_24 chr1:87901336-87901416 0.00011 14_[+1]_58 chr6:159920214-159920294 0.00015 18_[+1]_54 chr2:84178571-84178651 0.00015 49_[+1]_23 chr8:99318569-99318649 0.00015 19_[+1]_53 chr19:12655329-12655409 0.00015 21_[+1]_51 chr5:180209004-180209084 0.00015 28_[+1]_44 chr3:129180858-129180938 0.00015 32_[+1]_40 chrX:55143166-55143246 0.00015 5_[+1]_67 chr11:44291726-44291806 0.00015 42_[+1]_30 chr16:54482135-54482215 0.00015 44_[+1]_28 chr14:20645717-20645797 0.00015 31_[+1]_41 chr7:29686807-29686887 0.00015 60_[+1]_12 chr20:39679412-39679492 0.00015 47_[+1]_25 chr10:25782242-25782322 0.00022 36_[+1]_36 chr4:81100937-81101017 0.00022 30_[+1]_42 chr11:124537660-12453774 0.00022 43_[+1]_29 chr6:4728376-4728456 0.00022 39_[+1]_33 chr1:237077138-237077218 0.00022 41_[+1]_31 chr9:34150353-34150433 0.00022 26_[+1]_46 chr1:66004533-66004613 0.00022 26_[+1]_46 chr3:32115910-32115990 0.00022 6_[+1]_66 chr14:35122440-35122520 0.00022 4_[+1]_68 chr1:206825547-206825627 0.00026 46_[+1]_26 chr3:32182563-32182643 0.00026 34_[+1]_38 chr2:72770848-72770928 0.00026 3_[+1]_69 chr21:33918389-33918469 0.00026 21_[+1]_51 chr6:119863394-119863474 0.00026 8_[+1]_64 chr1:28851660-28851740 0.00026 5_[+1]_67 chr5:70681217-70681297 0.00026 10_[+1]_62 chr16:25783241-25783321 0.0003 5_[+1]_67 chr10:13457784-13457864 0.0003 26_[+1]_46 chr16:75077153-75077233 0.0003 60_[+1]_12 chr5:1067947-1068027 0.0003 9_[+1]_63 chr6:134279189-134279269 0.0003 20_[+1]_52 chr12:56520685-56520765 0.00034 50_[+1]_22 chr1:65696943-65697023 0.00034 33_[+1]_39 chr3:43812277-43812357 0.00034 34_[+1]_38 chr2:17304321-17304401 0.0004 40_[+1]_32 chr4:17672227-17672307 0.0004 57_[+1]_15 chr11:5181583-5181663 0.0004 [+1]_72 chr3:43719955-43720035 0.00042 3_[+1]_69 chr6:38764356-38764436 0.00042 11_[+1]_61 chr6:27741806-27741886 0.00042 43_[+1]_29 chr18:8913752-8913832 0.00042 54_[+1]_18 chr2:65249004-65249084 0.00048 63_[+1]_9 chr19:21641036-21641116 0.00048 50_[+1]_22 chr8:126676823-126676903 0.00048 25_[+1]_47 chr2:191136649-191136729 0.00048 15_[+1]_57 chr18:55250662-55250742 0.00052 15_[+1]_57 chr20:9129840-9129920 0.00052 20_[+1]_52 chr3:20064535-20064615 0.00054 39_[+1]_33 chr10:26055814-26055894 0.00054 3_[+1]_69 chr20:37081806-37081886 0.00054 28_[+1]_44 chr7:104607700-104607780 0.00054 44_[+1]_28 chr8:11736998-11737078 0.0006 38_[+1]_34 chr12:50956916-50956996 0.0006 58_[+1]_14 chr4:69730317-69730397 0.0006 36_[+1]_36 chr5:176421980-176422060 0.0006 47_[+1]_25 chr11:3986923-3987003 0.00071 13_[+1]_59 chr22:26800975-26801055 0.00077 10_[+1]_62 chr12:6748481-6748561 0.00083 55_[+1]_17 chr9:251546-251626 0.00083 23_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCWB width=8 seqs=124 chr1:161136321-161136401 ( 51) CTTATCTG 1 chr8:96105523-96105603 ( 8) CTTATCTG 1 chr17:71470661-71470741 ( 52) CTTATCTG 1 chr19:8098401-8098481 ( 35) CTTATCTG 1 chr9:108409942-108410022 ( 31) CTTATCTG 1 chrX:10838261-10838341 ( 15) CTTATCTG 1 chr1:67420694-67420774 ( 32) CTTATCTG 1 chr1:5946036-5946116 ( 6) CTTATCTC 1 chr6:146870146-146870226 ( 52) CTTATCTC 1 chr1:41286694-41286774 ( 11) CTTATCTC 1 chr5:179982448-179982528 ( 45) CTTATCTC 1 chr22:28956488-28956568 ( 7) CTTATCTC 1 chr19:10410317-10410397 ( 13) CTTATCTC 1 chr1:211395919-211395999 ( 44) CTTATCTC 1 chr1:95645316-95645396 ( 13) CTTATCTC 1 chr9:37197244-37197324 ( 46) CTTATCTC 1 chrX:130086527-130086607 ( 67) CTTATCTC 1 chr1:18857625-18857705 ( 24) CTTATCTC 1 chr15:40189616-40189696 ( 11) CTTATCTC 1 chr8:21818128-21818208 ( 6) CTTATCTC 1 chr1:41405194-41405274 ( 68) CTTATCTC 1 chr6:44102157-44102237 ( 3) CTTATCTC 1 chr2:64479902-64479982 ( 12) CTTATCTC 1 chr10:97185773-97185853 ( 6) CTTATCTT 1 chr5:75615709-75615789 ( 64) CTTATCTT 1 chr10:66268029-66268109 ( 25) CTTATCTT 1 chr18:6676252-6676332 ( 29) CTTATCTT 1 chr11:102212897-10221297 ( 54) CTTATCTT 1 chr3:16346291-16346371 ( 24) CTTATCTT 1 chr10:12307955-12308035 ( 58) CTTATCTT 1 chr19:52051121-52051201 ( 21) CTTATCTT 1 chr14:57476389-57476469 ( 7) CTTATCTT 1 chr11:9010293-9010373 ( 40) CTTATCTT 1 chr12:92798832-92798912 ( 42) CTTATCTT 1 chr1:18861049-18861129 ( 71) CTTATCTT 1 chr19:10727895-10727975 ( 13) CTTATCTT 1 chr18:968402-968482 ( 8) CTTATCTT 1 chr1:249183761-249183841 ( 18) CTTATCTT 1 chr9:125209208-125209288 ( 37) CTTATCTT 1 chr5:139597291-139597371 ( 3) CTTATCAG 1 chr17:62101709-62101789 ( 19) CTTATCAG 1 chr7:2062732-2062812 ( 11) CTTATCAG 1 chr18:6683170-6683250 ( 58) CTTATCAG 1 chr9:110778130-110778210 ( 22) CTTATCAG 1 chr2:170521629-170521709 ( 41) CTTATCAG 1 chr2:170870534-170870614 ( 22) CTTATCAG 1 chr22:44365573-44365653 ( 42) CTTATCAG 1 chr7:64405508-64405588 ( 41) CTTATCAG 1 chr7:92515501-92515581 ( 1) CTTATCAG 1 chr6:159303109-159303189 ( 6) CTTATCAG 1 chr8:38068324-38068404 ( 7) CTTATCAG 1 chr5:149861680-149861760 ( 52) CTTATCAC 1 chr2:149300796-149300876 ( 29) CTTATCAC 1 chr3:195805981-195806061 ( 30) CTTATCAC 1 chr1:25606333-25606413 ( 15) CTTATCAC 1 chr1:153031963-153032043 ( 26) CTTATCAC 1 chr8:61242946-61243026 ( 44) CTTATCAT 1 chr10:13446408-13446488 ( 38) CTTATCAT 1 chr5:148018817-148018897 ( 37) CTTATCAT 1 chr2:162029741-162029821 ( 3) CTTATCAT 1 chr17:65852238-65852318 ( 16) CTTATCAT 1 chr4:57255923-57256003 ( 49) CTTATCAT 1 chr1:87901336-87901416 ( 15) CTTATCAT 1 chr6:159920214-159920294 ( 19) CTTATCTA 1 chr2:84178571-84178651 ( 50) GTTATCTG 1 chr8:99318569-99318649 ( 20) GTTATCTG 1 chr19:12655329-12655409 ( 22) GTTATCTG 1 chr5:180209004-180209084 ( 29) GTTATCTG 1 chr3:129180858-129180938 ( 33) CTTATCTA 1 chrX:55143166-55143246 ( 6) CTTATCTA 1 chr11:44291726-44291806 ( 43) GTTATCTG 1 chr16:54482135-54482215 ( 45) GTTATCTG 1 chr14:20645717-20645797 ( 32) CTTATCTA 1 chr7:29686807-29686887 ( 61) CTTATCTA 1 chr20:39679412-39679492 ( 48) GTTATCTG 1 chr10:25782242-25782322 ( 37) TTTATCTC 1 chr4:81100937-81101017 ( 31) TTTATCTC 1 chr11:124537660-12453774 ( 44) TTTATCTC 1 chr6:4728376-4728456 ( 40) TTTATCTC 1 chr1:237077138-237077218 ( 42) TTTATCTC 1 chr9:34150353-34150433 ( 27) TTTATCTC 1 chr1:66004533-66004613 ( 27) TTTATCTC 1 chr3:32115910-32115990 ( 7) TTTATCTC 1 chr14:35122440-35122520 ( 5) TTTATCTC 1 chr1:206825547-206825627 ( 47) GTTATCAG 1 chr3:32182563-32182643 ( 35) CTTATCAA 1 chr2:72770848-72770928 ( 4) CTTATCAA 1 chr21:33918389-33918469 ( 22) GTTATCAG 1 chr6:119863394-119863474 ( 9) GTTATCAG 1 chr1:28851660-28851740 ( 6) GTTATCAG 1 chr5:70681217-70681297 ( 11) GTTATCAG 1 chr16:25783241-25783321 ( 6) TTTATCTT 1 chr10:13457784-13457864 ( 27) TTTATCTT 1 chr16:75077153-75077233 ( 61) TTTATCTT 1 chr5:1067947-1068027 ( 10) GTTATCAC 1 chr6:134279189-134279269 ( 21) GTTATCAC 1 chr12:56520685-56520765 ( 51) TTTATCAG 1 chr1:65696943-65697023 ( 34) ATTATCTG 1 chr3:43812277-43812357 ( 35) TTTATCAG 1 chr2:17304321-17304401 ( 41) GTTATCAT 1 chr4:17672227-17672307 ( 58) ATTATCTC 1 chr11:5181583-5181663 ( 1) TTTATCAC 1 chr3:43719955-43720035 ( 4) GTTATCTA 1 chr6:38764356-38764436 ( 12) GTTATCTA 1 chr6:27741806-27741886 ( 44) GTTATCTA 1 chr18:8913752-8913832 ( 55) GTTATCTA 1 chr2:65249004-65249084 ( 64) CTTTTCTG 1 chr19:21641036-21641116 ( 51) ATTATCTT 1 chr8:126676823-126676903 ( 26) ATTATCTT 1 chr2:191136649-191136729 ( 16) ATTATCTT 1 chr18:55250662-55250742 ( 16) CTTTTCTC 1 chr20:9129840-9129920 ( 21) CTTTTCTC 1 chr3:20064535-20064615 ( 40) ATTATCAG 1 chr10:26055814-26055894 ( 4) ATTATCAG 1 chr20:37081806-37081886 ( 29) ATTATCAG 1 chr7:104607700-104607780 ( 45) ATTATCAG 1 chr8:11736998-11737078 ( 39) GTTATCAA 1 chr12:50956916-50956996 ( 59) CTTTTCTT 1 chr4:69730317-69730397 ( 37) CTTTTCTT 1 chr5:176421980-176422060 ( 48) GTTATCAA 1 chr11:3986923-3987003 ( 14) TTTATCAA 1 chr22:26800975-26801055 ( 11) GTTTTCTG 1 chr12:6748481-6748561 ( 56) TTTTTCTG 1 chr9:251546-251626 ( 24) TTTTTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.49627 E= 7.2e-082 -188 137 -38 -88 -1360 -1360 -1360 190 -1360 -1360 -1360 190 181 -1360 -1360 -205 -1360 -1360 -1360 190 -1360 210 -1360 -1360 41 -1360 -1360 127 -124 32 55 -5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 7.2e-082 0.072581 0.604839 0.177419 0.145161 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.935484 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.354839 0.000000 0.000000 0.645161 0.112903 0.290323 0.338710 0.258065 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-1 regular expression -------------------------------------------------------------------------------- CTTATC[TA][GCT] -------------------------------------------------------------------------------- Time 4.80 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGATAAG MEME-2 width = 8 sites = 119 llr = 875 E-value = 2.2e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 27:a:a92 pos.-specific C 4::::::2 probability G 3:a:::15 matrix T 23::a::1 bits 2.1 * 1.9 *** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.1 ****** (10.6 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:25782242-25782322 54 1.71e-05 CTGCACCACT CAGATAAG CCCCATGCTG chr11:125423012-12542309 39 1.71e-05 gtggtggctc cagataag ggggagtgga chr11:94833493-94833573 20 1.71e-05 cagtgctctt cagataag gacacagctc chr19:52051121-52051201 67 1.71e-05 cagtgaaaca cagataag acagct chr12:6874566-6874646 33 1.71e-05 GTGCCTGACT CAGATAAG ACAAGAGCAG chr13:19398947-19399027 44 1.71e-05 aagttaagtg cagataag ggaacctgga chr8:37949366-37949446 73 1.71e-05 ctggtgagta cagataag chr16:58010486-58010566 32 1.71e-05 CTGGGCCCTA CAGATAAG GTAGCTGCTA chr8:37939618-37939698 71 1.71e-05 ctggtgagta cagataag gc chr3:50577062-50577142 36 1.71e-05 CTGCAGGAGA CAGATAAG GTTGGGGAGA chr1:249183761-249183841 65 1.71e-05 cagtaaaaca cagataag gcagctcg chr1:120809572-120809652 73 1.71e-05 CTGGCTACTA CAGATAAG chr5:34700017-34700097 72 3.41e-05 TCTGGTGCTA GAGATAAG G chr22:43579671-43579751 41 3.41e-05 GTGGGATGGG GAGATAAG GGCCTTGGTC chr14:81868480-81868560 55 3.41e-05 GTGCTTAAGG GAGATAAG CCTTCCTCAG chr3:98302739-98302819 7 3.41e-05 GGACCA GAGATAAG GGAGGCAGAA chr8:101776307-101776387 2 3.41e-05 T GAGATAAG GCAAGAACAT chr15:35459076-35459156 38 3.41e-05 GAGCTTAAGA GAGATAAG ACATGACTTT chr6:20458740-20458820 24 3.41e-05 GTGGACCTTG GAGATAAG CTTCTATTCT chr6:16263841-16263921 7 3.41e-05 gttgca gagataag aggtcggggc chr3:152949178-152949258 14 3.41e-05 ttggggcaca gagataag aggttggggc chr17:60311533-60311613 29 3.41e-05 ctgggcaaca gagataag accctatctc chr1:35602536-35602616 36 3.41e-05 ttggggcaaa gagataag aggttggggc chr9:102907608-102907688 64 3.41e-05 atggggtgca gagataag aagtcaggg chr4:129566595-129566675 35 3.41e-05 ctgggacaca gagataag aggtcggggc chr2:17304321-17304401 69 5.12e-05 atgtcacagc cagataac cctc chr4:17672227-17672307 8 5.12e-05 ATGCACC CAGATAAC AACACTGGCT chr19:21641036-21641116 43 5.12e-05 cctggctttg cagataac attatcttag chr19:4247673-4247753 52 5.12e-05 tctggtcatg cagataac ctctgcctta chr7:43026531-43026611 18 1.08e-04 TGTGGAAAAA AAGATAAG ACTGGTGAGA chr16:29954798-29954878 71 1.08e-04 agataagcac aagataag ca chr14:67885770-67885850 61 1.08e-04 CTGCTGGATA TAGATAAG AGCCCCTTCC chr15:91384378-91384458 51 1.08e-04 GTGGTCTGCT CTGATAAG GATTTGCGTC chr17:52938583-52938663 38 1.08e-04 GCTGCCTTAA CTGATAAG CCTATGAATG chr6:145207963-145208043 45 1.08e-04 CTGGTGTGGT CTGATAAG CATAGTCTAT chrX:47572291-47572371 59 1.08e-04 caggtgcact aagataag gaagctaaaa chr5:131987928-131988008 45 1.08e-04 ctgggaggcc aagataag aggatcactt chr3:130062066-130062146 51 1.08e-04 ctggttgata tagataag taagccactt chr15:35849817-35849897 16 1.08e-04 GTTTGTTGGG TAGATAAG TGAAGAAGAT chr12:6748481-6748561 71 1.08e-04 CTGGTAATGG TAGATAAG GG chr17:75118744-75118824 65 1.08e-04 catgaggaca ctgataag aacacaca chr7:90929380-90929460 71 1.08e-04 cctgctatca tagataag gt chr18:55250662-55250742 67 1.08e-04 ggctgctgtg aagataag agggga chr3:141567995-141568075 62 1.08e-04 TAGGCAGAAG CTGATAag gagaagcagg chr1:202913665-202913745 36 1.08e-04 ATGGGCAGCA AAGATAAG CTTTACTTGA chr1:38989340-38989420 67 1.08e-04 ctctacccat tagataag aacttt chr1:57693107-57693187 26 1.08e-04 gctgggtaaa tagataag gagcaacaga chr7:104607700-104607780 13 1.08e-04 GTGGGCTGAG TAGATAAG GCAAGCTGGG chr6:28514936-28515016 70 1.08e-04 tctgcacagc aagataag taa chr6:35993462-35993542 62 1.08e-04 CATGTTTTTG TAGATAAG AGAATTCCAG chr3:32115910-32115990 70 1.08e-04 cttcacgtta ctgataag ccc chr5:153121745-153121825 53 1.08e-04 atggggaagC AAGATAAG AAGAAGGTAG chr14:35122440-35122520 68 1.08e-04 ctttgcatta ctgataag ccctc chr1:5946036-5946116 47 1.25e-04 ATGACAATTG GAGATAAC ATATAATGGA chr9:111896504-111896584 60 1.25e-04 ctgcattagg gagataac aaggaggaca chr1:25739925-25740005 45 1.42e-04 GTGTTCAGGG GTGATAAG AAGTGGATGT chr15:50039601-50039681 23 1.42e-04 gaggcacttt gtgataag gtagtttttt chr1:117300832-117300912 50 1.42e-04 TGGGCAGGGA GTGATAAG AAGGGAAAAG chr8:126193321-126193401 48 1.42e-04 CTGCAGCAAA GTGATAAG GCAGCAGCTT chr12:56520685-56520765 42 1.61e-04 CCTGCAGAAC CAGATAAA ATTTATCAGC chr14:57476389-57476469 68 1.81e-04 ATCAATGGGA GAGATAAA GAATT chr6:45262233-45262313 3 1.81e-04 aa gagataaa gggcatccac chr5:112378696-112378776 65 1.81e-04 CTTGCAGGAG GAGATAAA GAACTGGG chr6:161223176-161223256 39 1.81e-04 tctgctcact gagataaa tgcatatctg chr1:209819347-209819427 4 1.81e-04 caa gagataaa aatgacagct chr2:38591483-38591563 40 1.81e-04 CTGTGTTGCA GAGATAAA CTCAAAGTGA chr6:159303109-159303189 69 1.81e-04 ctgggttctg gagataaa gagt chr11:107436854-10743693 39 1.81e-04 tctgctcact gagataaa tgcatatctg chr22:37948842-37948922 30 1.96e-04 CTGGGTGACA CAGATAGG GACGAAGAGC chr1:27400857-27400937 65 2.67e-04 ctgttgagca gagatagg gaggatct chr8:86971501-86971581 64 2.67e-04 CTGGTCTCCA AAGATAAC ATTTGTCAT chr8:11736998-11737078 27 2.67e-04 CCTCGGGGGC CTGATAAC CCGGGTTATC chr3:31533313-31533393 65 2.67e-04 gtggtgggtc ctgataac acagttct chr3:125152084-125152164 11 2.67e-04 ttgtgcagtg ctgataac accaacgttg chr9:100705733-100705813 49 2.67e-04 TGTACACATA TAGATAAC ATGTTCTATA chr7:51444284-51444364 16 2.67e-04 aggctagaat ctgataac caggaagtgt chr1:237077138-237077218 1 2.67e-04 . tagataac ttacactcta chr7:29686807-29686887 35 2.67e-04 gtgcatcctt tagataac tgccactctg chr11:5181583-5181663 52 2.67e-04 tcagcaaagg gagatagg agtggggctg chr1:90169244-90169324 6 2.67e-04 aatta tagataac atctagaaga chr1:246741203-246741283 55 3.26e-04 TGTTTCCTAC CAGATAAT ACTTGTGGTT chr15:50886661-50886741 39 3.26e-04 ATGGCTAAGA ATGATAAG TGGAGGAGGC chr16:56312538-56312618 48 3.26e-04 tgcataatgt cagataat gctaagggct chr1:53079860-53079940 70 3.26e-04 ctggagccac atgataag gag chrX:65382313-65382393 73 3.26e-04 GTGTGCGAGG CAGATAAT chr21:35483101-35483181 20 3.43e-04 attgctaaca gtgataac attgtgctca chr9:251546-251626 43 3.43e-04 GATGCGCCTG GTGATAAC ATTTTCCAGT chr12:7830214-7830294 13 4.28e-04 GCCTTTGCTC TAGATAAA ATTCCCTGAC chr1:26397037-26397117 64 4.28e-04 ctgttggcta aagataaa ggatttcct chr1:207693590-207693670 42 4.28e-04 atgggacagc tagataaa acctacttga chr11:17208660-17208740 73 4.28e-04 GTGTAGAGTG AAGATAAA chr7:107720769-107720849 33 4.28e-04 CTGGACCCTG TAGATAAA ACCTCTTTAA chr7:88319278-88319358 30 4.28e-04 ctgaaaagca aagataaa gcagaatcac chr22:32022698-32022778 48 4.63e-04 TTGGCCTGCA CAGATAGC GGAAGGAAGA chr16:25783241-25783321 38 5.12e-04 CATTTAGTGG AAGATAGG ATAACGTTTC chr4:145061886-145061966 31 5.12e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr7:111078720-111078800 7 5.12e-04 acaaag ctgatagg caaaagaaag chr4:144826768-144826848 21 5.12e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr4:144940557-144940637 12 5.12e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr21:33918389-33918469 57 5.26e-04 tggaagggca gagatagc gttaagccca chr22:44365573-44365653 33 5.26e-04 tctggggaca gagatagc acttatcagg chr2:152646120-152646200 43 5.81e-04 CTATCTGAAC ATGATAAC CGAGTGTCGT chr8:98790768-98790848 71 5.81e-04 ttgtgtccgg ttgataac ac chr8:100150244-100150324 44 5.81e-04 tggtccacag atgataac agtggtatca chr19:2161397-2161477 72 6.63e-04 cTGtctgggc ctgataat t chr3:20064535-20064615 29 6.63e-04 gatgcactac tagataat aacaTTATCa chr20:57596209-57596289 35 6.63e-04 CTGAAGCTGG AAGATAAT ACGGAAAGGG chr6:119863394-119863474 61 6.63e-04 GTGCTGTTGT CTGATAAT GGTTATCGCT chr7:108178829-108178909 53 7.00e-04 atggttctgt gtgataat gcaggcacca chr4:139592836-139592916 8 7.00e-04 AGACTAA GAGATAGA GAAAACATGG chr2:149300796-149300876 71 7.45e-04 cctggccaaa atgataaa ac chr7:135348924-135349004 68 7.45e-04 CTGTTGCTCA TTGATAAA CTGAG chr4:81100937-81101017 59 7.94e-04 ggtggaaagg ctgatagc tgcatgggtt chr2:169990971-169991051 66 7.94e-04 acttggttta ctgatagc agttcca chr1:143942463-143942543 64 8.45e-04 GGTGAGCAAG CAGATAGT CTGAAGCAA chr5:176421980-176422060 40 8.45e-04 tctggctttt cagatagt gttatcaagg chr18:8913752-8913832 27 9.79e-04 ctggtagtta aagataga cccctgacct chr11:76411677-76411757 5 9.94e-04 AGAG CAGATGAG AAGGGATGAT chr11:10921232-10921312 14 9.94e-04 GAGACAGAGG CAGATGAG TCACAATCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:25782242-25782322 1.7e-05 53_[+2]_19 chr11:125423012-12542309 1.7e-05 38_[+2]_34 chr11:94833493-94833573 1.7e-05 19_[+2]_53 chr19:52051121-52051201 1.7e-05 66_[+2]_6 chr12:6874566-6874646 1.7e-05 32_[+2]_40 chr13:19398947-19399027 1.7e-05 43_[+2]_29 chr8:37949366-37949446 1.7e-05 72_[+2] chr16:58010486-58010566 1.7e-05 31_[+2]_41 chr8:37939618-37939698 1.7e-05 70_[+2]_2 chr3:50577062-50577142 1.7e-05 35_[+2]_37 chr1:249183761-249183841 1.7e-05 64_[+2]_8 chr1:120809572-120809652 1.7e-05 72_[+2] chr5:34700017-34700097 3.4e-05 71_[+2]_1 chr22:43579671-43579751 3.4e-05 40_[+2]_32 chr14:81868480-81868560 3.4e-05 54_[+2]_18 chr3:98302739-98302819 3.4e-05 6_[+2]_66 chr8:101776307-101776387 3.4e-05 1_[+2]_71 chr15:35459076-35459156 3.4e-05 37_[+2]_35 chr6:20458740-20458820 3.4e-05 23_[+2]_49 chr6:16263841-16263921 3.4e-05 6_[+2]_66 chr3:152949178-152949258 3.4e-05 13_[+2]_59 chr17:60311533-60311613 3.4e-05 28_[+2]_44 chr1:35602536-35602616 3.4e-05 35_[+2]_37 chr9:102907608-102907688 3.4e-05 63_[+2]_9 chr4:129566595-129566675 3.4e-05 34_[+2]_38 chr2:17304321-17304401 5.1e-05 68_[+2]_4 chr4:17672227-17672307 5.1e-05 7_[+2]_65 chr19:21641036-21641116 5.1e-05 42_[+2]_30 chr19:4247673-4247753 5.1e-05 51_[+2]_21 chr7:43026531-43026611 0.00011 17_[+2]_55 chr16:29954798-29954878 0.00011 70_[+2]_2 chr14:67885770-67885850 0.00011 60_[+2]_12 chr15:91384378-91384458 0.00011 50_[+2]_22 chr17:52938583-52938663 0.00011 37_[+2]_35 chr6:145207963-145208043 0.00011 44_[+2]_28 chrX:47572291-47572371 0.00011 58_[+2]_14 chr5:131987928-131988008 0.00011 44_[+2]_28 chr3:130062066-130062146 0.00011 50_[+2]_22 chr15:35849817-35849897 0.00011 15_[+2]_57 chr12:6748481-6748561 0.00011 70_[+2]_2 chr17:75118744-75118824 0.00011 64_[+2]_8 chr7:90929380-90929460 0.00011 70_[+2]_2 chr18:55250662-55250742 0.00011 66_[+2]_6 chr3:141567995-141568075 0.00011 61_[+2]_11 chr1:202913665-202913745 0.00011 35_[+2]_37 chr1:38989340-38989420 0.00011 66_[+2]_6 chr1:57693107-57693187 0.00011 25_[+2]_47 chr7:104607700-104607780 0.00011 12_[+2]_60 chr6:28514936-28515016 0.00011 69_[+2]_3 chr6:35993462-35993542 0.00011 61_[+2]_11 chr3:32115910-32115990 0.00011 69_[+2]_3 chr5:153121745-153121825 0.00011 52_[+2]_20 chr14:35122440-35122520 0.00011 67_[+2]_5 chr1:5946036-5946116 0.00012 46_[+2]_26 chr9:111896504-111896584 0.00012 59_[+2]_13 chr1:25739925-25740005 0.00014 44_[+2]_28 chr15:50039601-50039681 0.00014 22_[+2]_50 chr1:117300832-117300912 0.00014 49_[+2]_23 chr8:126193321-126193401 0.00014 47_[+2]_25 chr12:56520685-56520765 0.00016 41_[+2]_31 chr14:57476389-57476469 0.00018 67_[+2]_5 chr6:45262233-45262313 0.00018 2_[+2]_70 chr5:112378696-112378776 0.00018 64_[+2]_8 chr6:161223176-161223256 0.00018 38_[+2]_34 chr1:209819347-209819427 0.00018 3_[+2]_69 chr2:38591483-38591563 0.00018 39_[+2]_33 chr6:159303109-159303189 0.00018 68_[+2]_4 chr11:107436854-10743693 0.00018 38_[+2]_34 chr22:37948842-37948922 0.0002 29_[+2]_43 chr1:27400857-27400937 0.00027 64_[+2]_8 chr8:86971501-86971581 0.00027 63_[+2]_9 chr8:11736998-11737078 0.00027 26_[+2]_46 chr3:31533313-31533393 0.00027 64_[+2]_8 chr3:125152084-125152164 0.00027 10_[+2]_62 chr9:100705733-100705813 0.00027 48_[+2]_24 chr7:51444284-51444364 0.00027 15_[+2]_57 chr1:237077138-237077218 0.00027 [+2]_72 chr7:29686807-29686887 0.00027 34_[+2]_38 chr11:5181583-5181663 0.00027 51_[+2]_21 chr1:90169244-90169324 0.00027 5_[+2]_67 chr1:246741203-246741283 0.00033 54_[+2]_18 chr15:50886661-50886741 0.00033 38_[+2]_34 chr16:56312538-56312618 0.00033 47_[+2]_25 chr1:53079860-53079940 0.00033 69_[+2]_3 chrX:65382313-65382393 0.00033 72_[+2] chr21:35483101-35483181 0.00034 19_[+2]_53 chr9:251546-251626 0.00034 42_[+2]_30 chr12:7830214-7830294 0.00043 12_[+2]_60 chr1:26397037-26397117 0.00043 63_[+2]_9 chr1:207693590-207693670 0.00043 41_[+2]_31 chr11:17208660-17208740 0.00043 72_[+2] chr7:107720769-107720849 0.00043 32_[+2]_40 chr7:88319278-88319358 0.00043 29_[+2]_43 chr22:32022698-32022778 0.00046 47_[+2]_25 chr16:25783241-25783321 0.00051 37_[+2]_35 chr4:145061886-145061966 0.00051 30_[+2]_42 chr7:111078720-111078800 0.00051 6_[+2]_66 chr4:144826768-144826848 0.00051 20_[+2]_52 chr4:144940557-144940637 0.00051 11_[+2]_61 chr21:33918389-33918469 0.00053 56_[+2]_16 chr22:44365573-44365653 0.00053 32_[+2]_40 chr2:152646120-152646200 0.00058 42_[+2]_30 chr8:98790768-98790848 0.00058 70_[+2]_2 chr8:100150244-100150324 0.00058 43_[+2]_29 chr19:2161397-2161477 0.00066 71_[+2]_1 chr3:20064535-20064615 0.00066 28_[+2]_44 chr20:57596209-57596289 0.00066 34_[+2]_38 chr6:119863394-119863474 0.00066 60_[+2]_12 chr7:108178829-108178909 0.0007 52_[+2]_20 chr4:139592836-139592916 0.0007 7_[+2]_65 chr2:149300796-149300876 0.00074 70_[+2]_2 chr7:135348924-135349004 0.00074 67_[+2]_5 chr4:81100937-81101017 0.00079 58_[+2]_14 chr2:169990971-169991051 0.00079 65_[+2]_7 chr1:143942463-143942543 0.00085 63_[+2]_9 chr5:176421980-176422060 0.00085 39_[+2]_33 chr18:8913752-8913832 0.00098 26_[+2]_46 chr11:76411677-76411757 0.00099 4_[+2]_68 chr11:10921232-10921312 0.00099 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGATAAG width=8 seqs=119 chr10:25782242-25782322 ( 54) CAGATAAG 1 chr11:125423012-12542309 ( 39) CAGATAAG 1 chr11:94833493-94833573 ( 20) CAGATAAG 1 chr19:52051121-52051201 ( 67) CAGATAAG 1 chr12:6874566-6874646 ( 33) CAGATAAG 1 chr13:19398947-19399027 ( 44) CAGATAAG 1 chr8:37949366-37949446 ( 73) CAGATAAG 1 chr16:58010486-58010566 ( 32) CAGATAAG 1 chr8:37939618-37939698 ( 71) CAGATAAG 1 chr3:50577062-50577142 ( 36) CAGATAAG 1 chr1:249183761-249183841 ( 65) CAGATAAG 1 chr1:120809572-120809652 ( 73) CAGATAAG 1 chr5:34700017-34700097 ( 72) GAGATAAG 1 chr22:43579671-43579751 ( 41) GAGATAAG 1 chr14:81868480-81868560 ( 55) GAGATAAG 1 chr3:98302739-98302819 ( 7) GAGATAAG 1 chr8:101776307-101776387 ( 2) GAGATAAG 1 chr15:35459076-35459156 ( 38) GAGATAAG 1 chr6:20458740-20458820 ( 24) GAGATAAG 1 chr6:16263841-16263921 ( 7) GAGATAAG 1 chr3:152949178-152949258 ( 14) GAGATAAG 1 chr17:60311533-60311613 ( 29) GAGATAAG 1 chr1:35602536-35602616 ( 36) GAGATAAG 1 chr9:102907608-102907688 ( 64) GAGATAAG 1 chr4:129566595-129566675 ( 35) GAGATAAG 1 chr2:17304321-17304401 ( 69) CAGATAAC 1 chr4:17672227-17672307 ( 8) CAGATAAC 1 chr19:21641036-21641116 ( 43) CAGATAAC 1 chr19:4247673-4247753 ( 52) CAGATAAC 1 chr7:43026531-43026611 ( 18) AAGATAAG 1 chr16:29954798-29954878 ( 71) AAGATAAG 1 chr14:67885770-67885850 ( 61) TAGATAAG 1 chr15:91384378-91384458 ( 51) CTGATAAG 1 chr17:52938583-52938663 ( 38) CTGATAAG 1 chr6:145207963-145208043 ( 45) CTGATAAG 1 chrX:47572291-47572371 ( 59) AAGATAAG 1 chr5:131987928-131988008 ( 45) AAGATAAG 1 chr3:130062066-130062146 ( 51) TAGATAAG 1 chr15:35849817-35849897 ( 16) TAGATAAG 1 chr12:6748481-6748561 ( 71) TAGATAAG 1 chr17:75118744-75118824 ( 65) CTGATAAG 1 chr7:90929380-90929460 ( 71) TAGATAAG 1 chr18:55250662-55250742 ( 67) AAGATAAG 1 chr3:141567995-141568075 ( 62) CTGATAAG 1 chr1:202913665-202913745 ( 36) AAGATAAG 1 chr1:38989340-38989420 ( 67) TAGATAAG 1 chr1:57693107-57693187 ( 26) TAGATAAG 1 chr7:104607700-104607780 ( 13) TAGATAAG 1 chr6:28514936-28515016 ( 70) AAGATAAG 1 chr6:35993462-35993542 ( 62) TAGATAAG 1 chr3:32115910-32115990 ( 70) CTGATAAG 1 chr5:153121745-153121825 ( 53) AAGATAAG 1 chr14:35122440-35122520 ( 68) CTGATAAG 1 chr1:5946036-5946116 ( 47) GAGATAAC 1 chr9:111896504-111896584 ( 60) GAGATAAC 1 chr1:25739925-25740005 ( 45) GTGATAAG 1 chr15:50039601-50039681 ( 23) GTGATAAG 1 chr1:117300832-117300912 ( 50) GTGATAAG 1 chr8:126193321-126193401 ( 48) GTGATAAG 1 chr12:56520685-56520765 ( 42) CAGATAAA 1 chr14:57476389-57476469 ( 68) GAGATAAA 1 chr6:45262233-45262313 ( 3) GAGATAAA 1 chr5:112378696-112378776 ( 65) GAGATAAA 1 chr6:161223176-161223256 ( 39) GAGATAAA 1 chr1:209819347-209819427 ( 4) GAGATAAA 1 chr2:38591483-38591563 ( 40) GAGATAAA 1 chr6:159303109-159303189 ( 69) GAGATAAA 1 chr11:107436854-10743693 ( 39) GAGATAAA 1 chr22:37948842-37948922 ( 30) CAGATAGG 1 chr1:27400857-27400937 ( 65) GAGATAGG 1 chr8:86971501-86971581 ( 64) AAGATAAC 1 chr8:11736998-11737078 ( 27) CTGATAAC 1 chr3:31533313-31533393 ( 65) CTGATAAC 1 chr3:125152084-125152164 ( 11) CTGATAAC 1 chr9:100705733-100705813 ( 49) TAGATAAC 1 chr7:51444284-51444364 ( 16) CTGATAAC 1 chr1:237077138-237077218 ( 1) TAGATAAC 1 chr7:29686807-29686887 ( 35) TAGATAAC 1 chr11:5181583-5181663 ( 52) GAGATAGG 1 chr1:90169244-90169324 ( 6) TAGATAAC 1 chr1:246741203-246741283 ( 55) CAGATAAT 1 chr15:50886661-50886741 ( 39) ATGATAAG 1 chr16:56312538-56312618 ( 48) CAGATAAT 1 chr1:53079860-53079940 ( 70) ATGATAAG 1 chrX:65382313-65382393 ( 73) CAGATAAT 1 chr21:35483101-35483181 ( 20) GTGATAAC 1 chr9:251546-251626 ( 43) GTGATAAC 1 chr12:7830214-7830294 ( 13) TAGATAAA 1 chr1:26397037-26397117 ( 64) AAGATAAA 1 chr1:207693590-207693670 ( 42) TAGATAAA 1 chr11:17208660-17208740 ( 73) AAGATAAA 1 chr7:107720769-107720849 ( 33) TAGATAAA 1 chr7:88319278-88319358 ( 30) AAGATAAA 1 chr22:32022698-32022778 ( 48) CAGATAGC 1 chr16:25783241-25783321 ( 38) AAGATAGG 1 chr4:145061886-145061966 ( 31) CTGATAGG 1 chr7:111078720-111078800 ( 7) CTGATAGG 1 chr4:144826768-144826848 ( 21) CTGATAGG 1 chr4:144940557-144940637 ( 12) CTGATAGG 1 chr21:33918389-33918469 ( 57) GAGATAGC 1 chr22:44365573-44365653 ( 33) GAGATAGC 1 chr2:152646120-152646200 ( 43) ATGATAAC 1 chr8:98790768-98790848 ( 71) TTGATAAC 1 chr8:100150244-100150324 ( 44) ATGATAAC 1 chr19:2161397-2161477 ( 72) CTGATAAT 1 chr3:20064535-20064615 ( 29) TAGATAAT 1 chr20:57596209-57596289 ( 35) AAGATAAT 1 chr6:119863394-119863474 ( 61) CTGATAAT 1 chr7:108178829-108178909 ( 53) GTGATAAT 1 chr4:139592836-139592916 ( 8) GAGATAGA 1 chr2:149300796-149300876 ( 71) ATGATAAA 1 chr7:135348924-135349004 ( 68) TTGATAAA 1 chr4:81100937-81101017 ( 59) CTGATAGC 1 chr2:169990971-169991051 ( 66) CTGATAGC 1 chr1:143942463-143942543 ( 64) CAGATAGT 1 chr5:176421980-176422060 ( 40) CAGATAGT 1 chr18:8913752-8913832 ( 27) AAGATAGA 1 chr11:76411677-76411757 ( 5) CAGATGAG 1 chr11:10921232-10921312 ( 14) CAGATGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.52526 E= 2.2e-063 -67 70 35 -75 143 -1354 -1354 5 -1354 -1354 211 -1354 190 -1354 -1354 -1354 -1354 -1354 -1354 190 188 -1354 -378 -1354 168 -1354 -70 -1354 -74 -15 124 -167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 119 E= 2.2e-063 0.168067 0.378151 0.294118 0.159664 0.722689 0.000000 0.000000 0.277311 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.983193 0.000000 0.016807 0.000000 0.857143 0.000000 0.142857 0.000000 0.159664 0.210084 0.546218 0.084034 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-2 regular expression -------------------------------------------------------------------------------- [CG][AT]GATAA[GC] -------------------------------------------------------------------------------- Time 8.28 secs. ******************************************************************************** ******************************************************************************** MOTIF RRVWGCWG MEME-3 width = 8 sites = 59 llr = 438 E-value = 5.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6436::5: pos.-specific C ::4::a:: probability G 463:a::a matrix T :::4::5: bits 2.1 ** * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** * Entropy 1.1 ** ** * (10.7 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCAGCAG consensus GAGT T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:130086527-130086607 10 1.29e-05 atatcactg agcagcag agactctgaa chr15:35459076-35459156 13 1.29e-05 ATCATTCTCA AGCAGCAG GGAAAAGGAG chr11:102212897-10221297 13 3.71e-05 aacttggaag ggcagcag aggtttgggg chr19:907354-907434 35 3.71e-05 TCTCCACCCC AGCAGCTG GACAGGGCCG chr22:37948842-37948922 15 3.71e-05 CACCTCGAGG AGCAGCTG GGTGACACAG chr1:25606333-25606413 59 3.71e-05 TTATCAAACC AGCAGCTG ATGTGAGTGC chr7:104607700-104607780 73 3.71e-05 GAGCAAAGTA AGCAGCTG chr1:153031963-153032043 54 3.71e-05 GCACTAGAAT GGCAGCAG CCCTAGTGCC chr8:126193321-126193401 33 3.71e-05 CCTGATGGAG AGCAGCTG CAGCAAAGTG chr16:29954798-29954878 48 6.13e-05 atatgcctat agctgcag aaaaaagata chr8:11736998-11737078 7 6.13e-05 TCTCCC AGCTGCAG ACCCTCGGGG chr14:36733974-36734054 59 6.13e-05 cgatacaggt ggcagctg atgtttcaac chr3:179093040-179093120 72 6.13e-05 CAGTAAACCT GGCAGCTG A chr1:27400857-27400937 50 8.55e-05 gggaaatgga agctgctg ttgagcagag chr17:71470661-71470741 42 8.55e-05 CTCTGCCACC GGCTGCAG CTCTTATCTG chrX:55143166-55143246 70 8.55e-05 gttcctgcac ggctgcag ggt chr3:50577062-50577142 24 8.55e-05 AGTTGACGAT GGCTGCAG GAGACAGATA chr1:25739925-25740005 2 8.55e-05 C AGCTGCTG GTTTGATAAG chr18:55250662-55250742 57 1.10e-04 acttctgcag ggctgctg tgaagataag chr5:131987928-131988008 1 1.73e-04 . aggtgcag tggctgatgc chr14:102144518-10214459 12 1.73e-04 TACATTGAAC AGGTGCAG CGGGAAAAGG chr6:159920214-159920294 29 2.39e-04 cttatctata gggtgcag ctttgcttaa chr3:125152084-125152164 63 2.39e-04 ggtgatagtt gggtgcag caagattgtg chr10:13446408-13446488 59 2.39e-04 AAGTTTTATG AACAGCTG TGAGTAgagt chr6:119863394-119863474 49 2.39e-04 ATTCTCTTGA AGGTGCTG TTGTCTGATA chr3:141567995-141568075 71 2.39e-04 GCTGATAagg agaagcag ga chr16:58010486-58010566 60 2.39e-04 TTGGTGAGTC AGAAGCAG GGAGCCCTTG chr6:16263841-16263921 41 2.39e-04 ataagggatg gggtgcag agataagagg chr7:88319278-88319358 15 2.39e-04 CAACAGCTGa aacagctg aaaagcaaag chr11:5181583-5181663 11 2.39e-04 tttatcacct gggtgcag gcgggctgag chr1:35602536-35602616 71 2.39e-04 taagggattg gggtgcag ag chr2:84178571-84178651 6 3.06e-04 TCTCT GACAGCTG TCTCTCTCAT chr14:81868480-81868560 2 3.06e-04 G AGAAGCTG TGGGAGGTTT chr3:98302739-98302819 25 3.06e-04 GGAGGCAGAA AGAAGCTG TCTTTGAAGA chr9:37197244-37197324 36 3.06e-04 TTCATGTCCT GGAAGCAG CTCTTATCTC chr2:191049368-191049448 70 3.06e-04 ACAGGGGAAA GGGTGCTG GGT chr1:209819347-209819427 15 3.06e-04 agataaaaat gacagctg tttggcttag chr9:125016676-125016756 20 3.62e-04 TGGAGATGGG GACTGCAG GCTCTGATAG chr5:148186174-148186254 2 3.62e-04 T AACTGCTG GGAAGAAGGG chr11:9010293-9010373 50 3.62e-04 CTTATCTTTC AGATGCAG CCTGCAGAAG chr1:117300832-117300912 69 3.62e-04 AGGGAAAAGA GGAAGCTG GCTT chr9:100705733-100705813 30 4.17e-04 CTGCTAAAAC AGATGCTG CTGTACACAT chr19:52051121-52051201 48 4.17e-04 agcagccgga aagagcag acagtgaaac chr12:6874566-6874646 43 4.17e-04 CAGATAAGAC AAGAGCAG GGTTGTCTgg chr1:202913665-202913745 52 4.17e-04 AGCTTTACTT GACTGCTG GGTAGGAGCA chr1:249183761-249183841 46 4.17e-04 gcagccagaa aagagcag acagtaaaac chr9:125209208-125209288 64 4.17e-04 agcagccaga aagagcag acggtaaaa chr11:125423012-12542309 9 4.58e-04 agagatgg aagagctg gtggtgtggt chr1:95645316-95645396 4 4.58e-04 aag aagagctg tcttatctcc chr19:2161397-2161477 25 5.31e-04 cagcctccca aagtgctg ggattacagg chrX:47572291-47572371 73 5.31e-04 taaggaagct aaaagcag chr18:6683170-6683250 9 5.31e-04 CTCCCCCT AAAAGCAG AAACAAAACA chr8:37724762-37724842 4 5.31e-04 GAC AAGTGCTG CCTCATCTAT chr1:18857625-18857705 59 5.31e-04 acctactatc aagtgctg ccagccttac chr8:99318569-99318649 61 5.75e-04 AGACGATAAG GAAAGCAG GGACTACTCC chr9:130188239-130188319 22 5.75e-04 agacacctgg gaaagcag agcagatggg chr7:111078720-111078800 20 5.75e-04 ataggcaaaa gaaagcag agaaagccaa chr17:53894327-53894407 47 6.07e-04 AATAGAATGT GAAAGCTG CAAGAAAGAT chr8:96105523-96105603 18 6.39e-04 cttatctgag gaatgcag gcctcctttc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:130086527-130086607 1.3e-05 9_[+3]_63 chr15:35459076-35459156 1.3e-05 12_[+3]_60 chr11:102212897-10221297 3.7e-05 12_[+3]_60 chr19:907354-907434 3.7e-05 34_[+3]_38 chr22:37948842-37948922 3.7e-05 14_[+3]_58 chr1:25606333-25606413 3.7e-05 58_[+3]_14 chr7:104607700-104607780 3.7e-05 72_[+3] chr1:153031963-153032043 3.7e-05 53_[+3]_19 chr8:126193321-126193401 3.7e-05 32_[+3]_40 chr16:29954798-29954878 6.1e-05 47_[+3]_25 chr8:11736998-11737078 6.1e-05 6_[+3]_66 chr14:36733974-36734054 6.1e-05 58_[+3]_14 chr3:179093040-179093120 6.1e-05 71_[+3]_1 chr1:27400857-27400937 8.6e-05 49_[+3]_23 chr17:71470661-71470741 8.6e-05 41_[+3]_31 chrX:55143166-55143246 8.6e-05 69_[+3]_3 chr3:50577062-50577142 8.6e-05 23_[+3]_49 chr1:25739925-25740005 8.6e-05 1_[+3]_71 chr18:55250662-55250742 0.00011 56_[+3]_16 chr5:131987928-131988008 0.00017 [+3]_72 chr14:102144518-10214459 0.00017 11_[+3]_61 chr6:159920214-159920294 0.00024 28_[+3]_44 chr3:125152084-125152164 0.00024 62_[+3]_10 chr10:13446408-13446488 0.00024 58_[+3]_14 chr6:119863394-119863474 0.00024 48_[+3]_24 chr3:141567995-141568075 0.00024 70_[+3]_2 chr16:58010486-58010566 0.00024 59_[+3]_13 chr6:16263841-16263921 0.00024 40_[+3]_32 chr7:88319278-88319358 0.00024 14_[+3]_58 chr11:5181583-5181663 0.00024 10_[+3]_62 chr1:35602536-35602616 0.00024 70_[+3]_2 chr2:84178571-84178651 0.00031 5_[+3]_67 chr14:81868480-81868560 0.00031 1_[+3]_71 chr3:98302739-98302819 0.00031 24_[+3]_48 chr9:37197244-37197324 0.00031 35_[+3]_37 chr2:191049368-191049448 0.00031 69_[+3]_3 chr1:209819347-209819427 0.00031 14_[+3]_58 chr9:125016676-125016756 0.00036 19_[+3]_53 chr5:148186174-148186254 0.00036 1_[+3]_71 chr11:9010293-9010373 0.00036 49_[+3]_23 chr1:117300832-117300912 0.00036 68_[+3]_4 chr9:100705733-100705813 0.00042 29_[+3]_43 chr19:52051121-52051201 0.00042 47_[+3]_25 chr12:6874566-6874646 0.00042 42_[+3]_30 chr1:202913665-202913745 0.00042 51_[+3]_21 chr1:249183761-249183841 0.00042 45_[+3]_27 chr9:125209208-125209288 0.00042 63_[+3]_9 chr11:125423012-12542309 0.00046 8_[+3]_64 chr1:95645316-95645396 0.00046 3_[+3]_69 chr19:2161397-2161477 0.00053 24_[+3]_48 chrX:47572291-47572371 0.00053 72_[+3] chr18:6683170-6683250 0.00053 8_[+3]_64 chr8:37724762-37724842 0.00053 3_[+3]_69 chr1:18857625-18857705 0.00053 58_[+3]_14 chr8:99318569-99318649 0.00058 60_[+3]_12 chr9:130188239-130188319 0.00058 21_[+3]_51 chr7:111078720-111078800 0.00058 19_[+3]_53 chr17:53894327-53894407 0.00061 46_[+3]_26 chr8:96105523-96105603 0.00064 17_[+3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRVWGCWG width=8 seqs=59 chrX:130086527-130086607 ( 10) AGCAGCAG 1 chr15:35459076-35459156 ( 13) AGCAGCAG 1 chr11:102212897-10221297 ( 13) GGCAGCAG 1 chr19:907354-907434 ( 35) AGCAGCTG 1 chr22:37948842-37948922 ( 15) AGCAGCTG 1 chr1:25606333-25606413 ( 59) AGCAGCTG 1 chr7:104607700-104607780 ( 73) AGCAGCTG 1 chr1:153031963-153032043 ( 54) GGCAGCAG 1 chr8:126193321-126193401 ( 33) AGCAGCTG 1 chr16:29954798-29954878 ( 48) AGCTGCAG 1 chr8:11736998-11737078 ( 7) AGCTGCAG 1 chr14:36733974-36734054 ( 59) GGCAGCTG 1 chr3:179093040-179093120 ( 72) GGCAGCTG 1 chr1:27400857-27400937 ( 50) AGCTGCTG 1 chr17:71470661-71470741 ( 42) GGCTGCAG 1 chrX:55143166-55143246 ( 70) GGCTGCAG 1 chr3:50577062-50577142 ( 24) GGCTGCAG 1 chr1:25739925-25740005 ( 2) AGCTGCTG 1 chr18:55250662-55250742 ( 57) GGCTGCTG 1 chr5:131987928-131988008 ( 1) AGGTGCAG 1 chr14:102144518-10214459 ( 12) AGGTGCAG 1 chr6:159920214-159920294 ( 29) GGGTGCAG 1 chr3:125152084-125152164 ( 63) GGGTGCAG 1 chr10:13446408-13446488 ( 59) AACAGCTG 1 chr6:119863394-119863474 ( 49) AGGTGCTG 1 chr3:141567995-141568075 ( 71) AGAAGCAG 1 chr16:58010486-58010566 ( 60) AGAAGCAG 1 chr6:16263841-16263921 ( 41) GGGTGCAG 1 chr7:88319278-88319358 ( 15) AACAGCTG 1 chr11:5181583-5181663 ( 11) GGGTGCAG 1 chr1:35602536-35602616 ( 71) GGGTGCAG 1 chr2:84178571-84178651 ( 6) GACAGCTG 1 chr14:81868480-81868560 ( 2) AGAAGCTG 1 chr3:98302739-98302819 ( 25) AGAAGCTG 1 chr9:37197244-37197324 ( 36) GGAAGCAG 1 chr2:191049368-191049448 ( 70) GGGTGCTG 1 chr1:209819347-209819427 ( 15) GACAGCTG 1 chr9:125016676-125016756 ( 20) GACTGCAG 1 chr5:148186174-148186254 ( 2) AACTGCTG 1 chr11:9010293-9010373 ( 50) AGATGCAG 1 chr1:117300832-117300912 ( 69) GGAAGCTG 1 chr9:100705733-100705813 ( 30) AGATGCTG 1 chr19:52051121-52051201 ( 48) AAGAGCAG 1 chr12:6874566-6874646 ( 43) AAGAGCAG 1 chr1:202913665-202913745 ( 52) GACTGCTG 1 chr1:249183761-249183841 ( 46) AAGAGCAG 1 chr9:125209208-125209288 ( 64) AAGAGCAG 1 chr11:125423012-12542309 ( 9) AAGAGCTG 1 chr1:95645316-95645396 ( 4) AAGAGCTG 1 chr19:2161397-2161477 ( 25) AAGTGCTG 1 chrX:47572291-47572371 ( 73) AAAAGCAG 1 chr18:6683170-6683250 ( 9) AAAAGCAG 1 chr8:37724762-37724842 ( 4) AAGTGCTG 1 chr1:18857625-18857705 ( 59) AAGTGCTG 1 chr8:99318569-99318649 ( 61) GAAAGCAG 1 chr9:130188239-130188319 ( 22) GAAAGCAG 1 chr7:111078720-111078800 ( 20) GAAAGCAG 1 chr17:53894327-53894407 ( 47) GAAAGCTG 1 chr8:96105523-96105603 ( 18) GAATGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 5.4e-003 111 -1253 87 -1253 54 -1253 140 -1253 -7 92 40 -1253 107 -1253 -1253 72 -1253 -1253 211 -1253 -1253 210 -1253 -1253 97 -1253 -1253 82 -1253 -1253 211 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 5.4e-003 0.576271 0.000000 0.423729 0.000000 0.389831 0.000000 0.610169 0.000000 0.254237 0.440678 0.305085 0.000000 0.559322 0.000000 0.000000 0.440678 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.525424 0.000000 0.000000 0.474576 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRVWGCWG MEME-3 regular expression -------------------------------------------------------------------------------- [AG][GA][CGA][AT]GC[AT]G -------------------------------------------------------------------------------- Time 11.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGYSTGG MEME-4 width = 8 sites = 17 llr = 155 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C ::255::: probability G aa814:aa matrix T :::4:a:: bits 2.1 ** ** 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 *** *** Entropy 1.1 *** *** (13.1 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCCTGG consensus CTG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:145207963-145208043 31 9.78e-06 CCAGTGAAGG GGGCCTGG TGTGGTCTGA chr7:108178829-108178909 28 9.78e-06 gagaagacta gggcctgg ttcacagatg chr16:58010486-58010566 18 9.78e-06 CTGTGCACCT GGGCCTGG GCCCTACAGA chr18:8913752-8913832 13 9.78e-06 gccacaccct gggcctgg tagttaaaga chr11:3986923-3987003 35 3.08e-05 ATTGCAggct gggcgtgg tggcccatgc chr9:102907608-102907688 37 3.08e-05 taagaggttg gggcgtgg aaataaggga chr19:4247673-4247753 39 3.08e-05 Ttttttactg gggtctgg tcatgcagat chr1:161136321-161136401 41 4.20e-05 CCGATAGCGA GGGTGTGG CCCTTATCTG chrX:47543007-47543087 6 4.20e-05 acatg gggtgtgg ggattagagg chr1:35602536-35602616 8 4.20e-05 gaggttg gggtgtgg aaataaggga chr8:61242946-61243026 65 5.18e-05 agtgcacctg ggccctgg gtggggtg chr8:21818128-21818208 24 7.29e-05 ATGCACGCCA GGCTCTGG CATAGCATTA chr5:176421980-176422060 27 7.29e-05 cattcctttg ggctctgg cttttcagat chr3:152949178-152949258 70 8.41e-05 taagaggttg gggcatgg aaa chr4:129566595-129566675 49 8.41e-05 taagaggtcg gggcatgg aaataaggga chr7:43026531-43026611 5 9.53e-05 GTAT GGCTGTGG AAAAAAAGAT chr15:91384378-91384458 28 1.18e-04 TTCATGAACG GGGGCTGG AAAATGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:145207963-145208043 9.8e-06 30_[+4]_42 chr7:108178829-108178909 9.8e-06 27_[+4]_45 chr16:58010486-58010566 9.8e-06 17_[+4]_55 chr18:8913752-8913832 9.8e-06 12_[+4]_60 chr11:3986923-3987003 3.1e-05 34_[+4]_38 chr9:102907608-102907688 3.1e-05 36_[+4]_36 chr19:4247673-4247753 3.1e-05 38_[+4]_34 chr1:161136321-161136401 4.2e-05 40_[+4]_32 chrX:47543007-47543087 4.2e-05 5_[+4]_67 chr1:35602536-35602616 4.2e-05 7_[+4]_65 chr8:61242946-61243026 5.2e-05 64_[+4]_8 chr8:21818128-21818208 7.3e-05 23_[+4]_49 chr5:176421980-176422060 7.3e-05 26_[+4]_46 chr3:152949178-152949258 8.4e-05 69_[+4]_3 chr4:129566595-129566675 8.4e-05 48_[+4]_24 chr7:43026531-43026611 9.5e-05 4_[+4]_68 chr15:91384378-91384458 0.00012 27_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGYSTGG width=8 seqs=17 chr6:145207963-145208043 ( 31) GGGCCTGG 1 chr7:108178829-108178909 ( 28) GGGCCTGG 1 chr16:58010486-58010566 ( 18) GGGCCTGG 1 chr18:8913752-8913832 ( 13) GGGCCTGG 1 chr11:3986923-3987003 ( 35) GGGCGTGG 1 chr9:102907608-102907688 ( 37) GGGCGTGG 1 chr19:4247673-4247753 ( 39) GGGTCTGG 1 chr1:161136321-161136401 ( 41) GGGTGTGG 1 chrX:47543007-47543087 ( 6) GGGTGTGG 1 chr1:35602536-35602616 ( 8) GGGTGTGG 1 chr8:61242946-61243026 ( 65) GGCCCTGG 1 chr8:21818128-21818208 ( 24) GGCTCTGG 1 chr5:176421980-176422060 ( 27) GGCTCTGG 1 chr3:152949178-152949258 ( 70) GGGCATGG 1 chr4:129566595-129566675 ( 49) GGGCATGG 1 chr7:43026531-43026611 ( 5) GGCTGTGG 1 chr15:91384378-91384458 ( 28) GGGGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 1.2e+004 -1073 -1073 211 -1073 -1073 -1073 211 -1073 -1073 1 172 -1073 -1073 118 -197 62 -118 118 61 -1073 -1073 -1073 -1073 190 -1073 -1073 211 -1073 -1073 -1073 211 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.235294 0.764706 0.000000 0.000000 0.529412 0.058824 0.411765 0.117647 0.529412 0.352941 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYSTGG MEME-4 regular expression -------------------------------------------------------------------------------- GG[GC][CT][CG]TGG -------------------------------------------------------------------------------- Time 14.80 secs. ******************************************************************************** ******************************************************************************** MOTIF STGASTCA MEME-5 width = 8 sites = 21 llr = 189 E-value = 7.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:a:1:a pos.-specific C 6:::6:a: probability G 4:a:4::: matrix T :9:::9:: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 *** ** Relative 1.3 *** *** Entropy 1.1 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGACTCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:75118744-75118824 34 1.50e-05 acagataacc ctgactca ccctgggttg chr4:8338331-8338411 47 1.50e-05 actcatccca ctgactca ccccacatgg chr1:6489891-6489971 18 1.50e-05 GGCGCTGGTG CTGACTCA GTGGCCAGAT chr2:218706942-218707022 53 1.50e-05 ccttaaactc ctgactca tttatccaac chr2:64479902-64479982 39 1.50e-05 actctctttt ctgactca gcccgcctgc chr14:67885770-67885850 18 4.49e-05 GATGTGAGGT GTGACTCA GCTGTGTGCA chr14:81868480-81868560 31 4.49e-05 AAAGCAGAGA GTGACTCA AGAAGTGTGC chr2:17304321-17304401 27 4.49e-05 gccagaccag ctgagtca accctggtta chr8:126676823-126676903 4 4.49e-05 CCG CTGAGTCA CCTGTGTCAT chr9:34150353-34150433 64 4.49e-05 GAGTTCAAGG CTGAGTCA TCAGGGTGA chr2:65233783-65233863 19 4.49e-05 gccaggcatg gtgactca cgcttgtaat chr2:219287344-219287424 34 4.49e-05 TCACTAAGAG GTGACTCA AAGTCAAGGT chr11:107436854-10743693 17 4.49e-05 agtcatccct ctgagtca tccctctgct chr19:2161397-2161477 44 5.98e-05 gattacaggc gtgagtca ccgctcctgg chr3:43812277-43812357 62 5.98e-05 GAGGCGAGTG GTGAGTCA TCACACTGGG chr1:67420694-67420774 19 5.98e-05 TTTTTACAAA GTGAGTCA CACTTCTTAT chr11:125423012-12542309 61 1.05e-04 agtggaaggg ctgagaca cccgatagct chr22:37948842-37948922 54 1.05e-04 GAGCAGCTGG GTGACACA GATAGGGATG chr8:38068324-38068404 43 1.05e-04 TGGATATAAT CTGAGACA AACAGGATGT chr16:29954798-29954878 26 1.20e-04 aagttaaaag cagactca ggggatatgc chr11:124537660-12453774 61 1.64e-04 CTTCTAGACA GAGACTCA CTCCTTTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:75118744-75118824 1.5e-05 33_[+5]_39 chr4:8338331-8338411 1.5e-05 46_[+5]_26 chr1:6489891-6489971 1.5e-05 17_[+5]_55 chr2:218706942-218707022 1.5e-05 52_[+5]_20 chr2:64479902-64479982 1.5e-05 38_[+5]_34 chr14:67885770-67885850 4.5e-05 17_[+5]_55 chr14:81868480-81868560 4.5e-05 30_[+5]_42 chr2:17304321-17304401 4.5e-05 26_[+5]_46 chr8:126676823-126676903 4.5e-05 3_[+5]_69 chr9:34150353-34150433 4.5e-05 63_[+5]_9 chr2:65233783-65233863 4.5e-05 18_[+5]_54 chr2:219287344-219287424 4.5e-05 33_[+5]_39 chr11:107436854-10743693 4.5e-05 16_[+5]_56 chr19:2161397-2161477 6e-05 43_[+5]_29 chr3:43812277-43812357 6e-05 61_[+5]_11 chr1:67420694-67420774 6e-05 18_[+5]_54 chr11:125423012-12542309 0.0001 60_[+5]_12 chr22:37948842-37948922 0.0001 53_[+5]_19 chr8:38068324-38068404 0.0001 42_[+5]_30 chr16:29954798-29954878 0.00012 25_[+5]_47 chr11:124537660-12453774 0.00016 60_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGASTCA width=8 seqs=21 chr17:75118744-75118824 ( 34) CTGACTCA 1 chr4:8338331-8338411 ( 47) CTGACTCA 1 chr1:6489891-6489971 ( 18) CTGACTCA 1 chr2:218706942-218707022 ( 53) CTGACTCA 1 chr2:64479902-64479982 ( 39) CTGACTCA 1 chr14:67885770-67885850 ( 18) GTGACTCA 1 chr14:81868480-81868560 ( 31) GTGACTCA 1 chr2:17304321-17304401 ( 27) CTGAGTCA 1 chr8:126676823-126676903 ( 4) CTGAGTCA 1 chr9:34150353-34150433 ( 64) CTGAGTCA 1 chr2:65233783-65233863 ( 19) GTGACTCA 1 chr2:219287344-219287424 ( 34) GTGACTCA 1 chr11:107436854-10743693 ( 17) CTGAGTCA 1 chr19:2161397-2161477 ( 44) GTGAGTCA 1 chr3:43812277-43812357 ( 62) GTGAGTCA 1 chr1:67420694-67420774 ( 19) GTGAGTCA 1 chr11:125423012-12542309 ( 61) CTGAGACA 1 chr22:37948842-37948922 ( 54) GTGACACA 1 chr8:38068324-38068404 ( 43) CTGAGACA 1 chr16:29954798-29954878 ( 26) CAGACTCA 1 chr11:124537660-12453774 ( 61) GAGACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 7.2e+001 -1104 129 89 -1104 -149 -1104 -1104 176 -1104 -1104 211 -1104 190 -1104 -1104 -1104 -1104 129 89 -1104 -90 -1104 -1104 168 -1104 210 -1104 -1104 190 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.2e+001 0.000000 0.571429 0.428571 0.000000 0.095238 0.000000 0.000000 0.904762 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGASTCA MEME-5 regular expression -------------------------------------------------------------------------------- [CG]TGA[CG]TCA -------------------------------------------------------------------------------- Time 17.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:126193321-126193401 4.89e-03 32_[+3(3.71e-05)]_14_[+3(3.71e-05)]_\ 18 chr14:35122440-35122520 8.53e-03 80 chr19:4247673-4247753 3.14e-03 38_[+4(3.08e-05)]_5_[+2(5.12e-05)]_\ 21 chr11:107436854-10743693 3.80e-03 16_[+5(4.49e-05)]_56 chr4:129566595-129566675 5.83e-04 34_[+2(3.41e-05)]_6_[+4(8.41e-05)]_\ 24 chr5:153121745-153121825 5.87e-02 80 chr17:62919222-62919302 3.30e-01 80 chr4:144940557-144940637 8.41e-02 80 chr3:32115910-32115990 8.83e-03 80 chr1:120809572-120809652 4.57e-02 72_[+2(1.71e-05)] chr9:102907608-102907688 1.16e-04 22_[+2(3.41e-05)]_6_[+4(3.08e-05)]_\ 19_[+2(3.41e-05)]_9 chr8:38068324-38068404 1.43e-03 6_[+1(7.21e-05)]_66 chr1:90169244-90169324 2.55e-02 80 chr1:67420694-67420774 5.54e-03 18_[+5(5.98e-05)]_5_[+1(1.73e-05)]_\ 41 chr9:125209208-125209288 3.35e-02 36_[+1(5.48e-05)]_36 chr1:117300832-117300912 1.32e-02 80 chr1:35602536-35602616 4.04e-04 7_[+4(4.20e-05)]_20_[+2(3.41e-05)]_\ 6_[+4(8.41e-05)]_23 chr17:60311533-60311613 6.25e-03 28_[+2(3.41e-05)]_44 chr5:70681217-70681297 8.40e-02 80 chr6:159303109-159303189 1.66e-03 5_[+1(7.21e-05)]_67 chr2:38591483-38591563 2.13e-02 80 chr18:8913752-8913832 1.33e-03 12_[+4(9.78e-06)]_60 chr7:92515501-92515581 7.77e-03 [+1(7.21e-05)]_72 chr1:249183761-249183841 3.67e-04 17_[+1(5.48e-05)]_39_[+2(1.71e-05)]_\ 8 chr4:144826768-144826848 8.41e-02 80 chr1:153031963-153032043 8.12e-03 25_[+1(8.95e-05)]_20_[+3(3.71e-05)]_\ 19 chr1:87901336-87901416 7.59e-02 80 chr1:209819347-209819427 3.36e-02 80 chr2:64479902-64479982 1.01e-03 11_[+1(3.48e-05)]_19_[+5(1.50e-05)]_\ 34 chr7:64405508-64405588 1.83e-02 40_[+1(7.21e-05)]_32 chr11:5181583-5181663 1.05e-04 80 chr5:176421980-176422060 8.65e-03 26_[+4(7.29e-05)]_46 chr20:39679412-39679492 1.54e-01 80 chr6:35993462-35993542 2.39e-01 80 chr15:50039601-50039681 1.05e-01 80 chr6:27741806-27741886 2.47e-01 80 chr2:218706942-218707022 1.88e-02 52_[+5(1.50e-05)]_20 chr7:29686807-29686887 1.62e-02 80 chr6:28514936-28515016 2.42e-02 80 chr18:968402-968482 1.42e-01 7_[+1(5.48e-05)]_65 chr2:191136649-191136729 3.23e-01 80 chr11:43974075-43974155 5.86e-01 80 chr3:179093040-179093120 1.11e-01 71_[+3(6.13e-05)]_1 chr7:104607700-104607780 5.13e-05 72_[+3(3.71e-05)] chr2:191049368-191049448 6.18e-02 80 chr7:88319278-88319358 2.76e-02 80 chrX:10838261-10838341 2.64e-02 14_[+1(1.73e-05)]_58 chr1:25606333-25606413 8.30e-03 14_[+1(8.95e-05)]_36_[+3(3.71e-05)]_\ 14 chr3:152949178-152949258 2.02e-03 13_[+2(3.41e-05)]_6_[+4(8.41e-05)]_\ 20_[+2(3.41e-05)]_6_[+4(8.41e-05)]_3 chr1:25739925-25740005 2.11e-02 1_[+3(8.55e-05)]_71 chr6:161223176-161223256 4.85e-02 80 chr22:44365573-44365653 6.82e-03 41_[+1(7.21e-05)]_31 chr3:50577062-50577142 1.15e-03 23_[+3(8.55e-05)]_4_[+2(1.71e-05)]_\ 37 chr1:6489891-6489971 3.93e-04 17_[+5(1.50e-05)]_55 chr8:100150244-100150324 1.75e-01 80 chr1:57693107-57693187 9.73e-02 80 chr2:169990971-169991051 2.39e-01 80 chr6:38764356-38764436 3.91e-01 80 chr5:112378696-112378776 9.87e-02 80 chr6:16263841-16263921 2.06e-03 6_[+2(3.41e-05)]_33_[+2(3.41e-05)]_\ 25 chr19:10727895-10727975 6.67e-02 12_[+1(5.48e-05)]_60 chr4:57255923-57256003 2.06e-01 80 chrX:49100809-49100889 8.51e-01 80 chr20:9129840-9129920 2.80e-02 80 chr8:37939618-37939698 7.49e-03 70_[+2(1.71e-05)]_2 chr1:38989340-38989420 1.87e-01 80 chr9:108409942-108410022 1.74e-02 30_[+1(1.73e-05)]_42 chr6:44102157-44102237 1.06e-01 2_[+1(3.48e-05)]_70 chrX:65382313-65382393 1.30e-01 80 chr2:170870534-170870614 6.45e-03 21_[+1(7.21e-05)]_51 chr19:8098401-8098481 5.83e-02 34_[+1(1.73e-05)]_38 chr1:202913665-202913745 4.01e-02 80 chr22:32022698-32022778 2.51e-01 80 chr6:20458740-20458820 5.03e-02 23_[+2(3.41e-05)]_49 chr2:219287344-219287424 3.02e-02 33_[+5(4.49e-05)]_39 chr16:58010486-58010566 9.24e-07 17_[+4(9.78e-06)]_6_[+2(1.71e-05)]_\ 13_[+5(5.98e-05)]_20 chr8:37949366-37949446 7.75e-03 72_[+2(1.71e-05)] chr22:37948842-37948922 6.18e-04 14_[+3(3.71e-05)]_22_[+3(3.71e-05)]_\ 28 chr14:91040258-91040338 6.87e-01 80 chr14:20645717-20645797 5.94e-02 80 chr2:65233783-65233863 2.08e-02 18_[+5(4.49e-05)]_54 chr7:135348924-135349004 1.31e-01 80 chr9:136159280-136159360 3.74e-01 80 chr1:18861049-18861129 5.34e-02 70_[+1(5.48e-05)]_2 chr16:54482135-54482215 1.13e-01 80 chr4:8338331-8338411 3.43e-02 46_[+5(1.50e-05)]_26 chr1:53079860-53079940 1.01e-01 80 chr1:41405194-41405274 1.64e-01 67_[+1(3.48e-05)]_5 chr9:111896504-111896584 1.38e-01 80 chr3:195805981-195806061 2.39e-01 29_[+1(8.95e-05)]_43 chr11:44291726-44291806 1.06e-02 80 chr8:21818128-21818208 2.59e-03 5_[+1(3.48e-05)]_10_[+4(7.29e-05)]_\ 49 chr19:907354-907434 1.35e-02 34_[+3(3.71e-05)]_38 chr15:40189616-40189696 3.92e-02 10_[+1(3.48e-05)]_62 chr6:45262233-45262313 1.80e-01 80 chr1:28851660-28851740 4.25e-01 80 chr13:19398947-19399027 2.27e-03 43_[+2(1.71e-05)]_29 chr7:107720769-107720849 2.23e-01 80 chr3:141567995-141568075 1.20e-02 80 chr15:35459076-35459156 1.80e-04 12_[+3(1.29e-05)]_17_[+2(3.41e-05)]_\ 35 chr1:66004533-66004613 4.70e-01 80 chr8:93107690-93107770 1.27e-01 80 chr20:37081806-37081886 8.33e-02 80 chr17:65852238-65852318 2.76e-01 80 chr12:6874566-6874646 2.15e-06 26_[+5(1.50e-05)]_46 chr12:92798832-92798912 2.10e-01 41_[+1(5.48e-05)]_31 chr1:65783744-65783824 7.70e-02 80 chr2:149300796-149300876 1.31e-02 28_[+1(8.95e-05)]_44 chr6:119863394-119863474 5.31e-03 80 chr18:55250662-55250742 8.54e-04 80 chr9:34150353-34150433 1.69e-02 63_[+5(4.49e-05)]_9 chr3:43812277-43812357 6.49e-03 61_[+5(5.98e-05)]_11 chr11:3986923-3987003 2.13e-02 34_[+4(3.08e-05)]_38 chr4:69730317-69730397 1.70e-01 80 chr1:18857625-18857705 4.07e-03 23_[+1(3.48e-05)]_49 chr1:61514709-61514789 7.94e-01 80 chr22:26800975-26801055 5.08e-02 80 chrX:130086527-130086607 6.39e-04 9_[+3(1.29e-05)]_49_[+1(3.48e-05)]_\ 6 chr2:162029741-162029821 3.58e-01 80 chr8:126676823-126676903 1.86e-02 3_[+5(4.49e-05)]_69 chr9:37197244-37197324 8.63e-03 45_[+1(3.48e-05)]_27 chr7:111078720-111078800 9.44e-02 80 chr16:56312538-56312618 2.39e-01 80 chr6:134279189-134279269 5.12e-03 80 chr1:95645316-95645396 8.11e-03 12_[+1(3.48e-05)]_60 chr11:9010293-9010373 1.69e-03 39_[+1(5.48e-05)]_33 chr5:148018817-148018897 1.45e-01 80 chr1:211395919-211395999 4.07e-02 43_[+1(3.48e-05)]_29 chr7:90929380-90929460 5.29e-02 80 chr14:57476389-57476469 9.08e-03 6_[+1(5.48e-05)]_66 chr9:130188239-130188319 7.49e-02 80 chr5:149861680-149861760 9.90e-03 51_[+1(8.95e-05)]_21 chr7:134519777-134519857 5.60e-01 80 chr19:52051121-52051201 8.37e-05 20_[+1(5.48e-05)]_38_[+2(1.71e-05)]_\ 6 chr17:75118744-75118824 1.96e-03 24_[+2(5.12e-05)]_1_[+5(1.50e-05)]_\ 39 chr19:10410317-10410397 3.02e-02 12_[+1(3.48e-05)]_60 chr8:98790768-98790848 4.35e-01 80 chr19:21641036-21641116 6.63e-03 42_[+2(5.12e-05)]_30 chrX:55143166-55143246 2.09e-02 69_[+3(8.55e-05)]_3 chr17:71470661-71470741 3.40e-03 26_[+1(3.48e-05)]_7_[+3(8.55e-05)]_\ 2_[+1(1.73e-05)]_21 chr9:251546-251626 3.26e-03 80 chr12:6748481-6748561 1.93e-02 80 chr21:33918389-33918469 4.65e-03 80 chr6:125302791-125302871 5.88e-01 80 chr1:237077138-237077218 5.29e-02 80 chr1:25611722-25611802 2.53e-02 80 chr10:12307955-12308035 6.32e-03 57_[+1(5.48e-05)]_15 chr10:13446408-13446488 4.14e-03 80 chr22:28956488-28956568 3.44e-02 6_[+1(3.48e-05)]_66 chr5:1067947-1068027 4.28e-01 80 chr2:170521629-170521709 1.34e-01 40_[+1(7.21e-05)]_32 chr9:110778130-110778210 2.10e-01 21_[+1(7.21e-05)]_51 chr3:129180858-129180938 1.84e-02 80 chr19:516726-516806 9.72e-02 80 chr16:75077153-75077233 1.48e-01 80 chr8:37724762-37724842 3.08e-02 80 chr18:6683170-6683250 2.69e-02 57_[+1(7.21e-05)]_15 chr21:35483101-35483181 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49_[+3(8.55e-05)]_23 chr10:97185773-97185853 3.50e-02 5_[+1(5.48e-05)]_67 chr11:76411677-76411757 7.92e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************