******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ARHGAP35.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:48103288-48103368 1.0000 80 chr10:1541109-1541189 1.0000 80 chr21:47235879-47235959 1.0000 80 chr19:8163170-8163250 1.0000 80 chr22:35939923-35940003 1.0000 80 chr19:415440-415520 1.0000 80 chr15:36936837-36936917 1.0000 80 chr12:132649130-13264921 1.0000 80 chr7:568217-568297 1.0000 80 chr2:241137298-241137378 1.0000 80 chr12:113875299-11387537 1.0000 80 chr16:12515725-12515805 1.0000 80 chr19:45249643-45249723 1.0000 80 chr15:27365146-27365226 1.0000 80 chr7:154609444-154609524 1.0000 80 chr6:164138295-164138375 1.0000 80 chr7:16438965-16439045 1.0000 80 chr21:47234591-47234671 1.0000 80 chr20:51810990-51811070 1.0000 80 chr19:3556548-3556628 1.0000 80 chr1:228229148-228229228 1.0000 80 chr10:1541927-1542007 1.0000 80 chr19:44302322-44302402 1.0000 80 chr2:3273032-3273112 1.0000 80 chr22:37468801-37468881 1.0000 80 chr10:11157448-11157528 1.0000 80 chr20:61888521-61888601 1.0000 80 chr3:38128920-38129000 1.0000 80 chr10:105461287-10546136 1.0000 80 chr17:80218434-80218514 1.0000 80 chr19:48272938-48273018 1.0000 80 chr15:58958051-58958131 1.0000 80 chr5:68345097-68345177 1.0000 80 chr5:103351608-103351688 1.0000 80 chr12:24861801-24861881 1.0000 80 chr2:232759799-232759879 1.0000 80 chr12:117563759-11756383 1.0000 80 chr5:19049027-19049107 1.0000 80 chr12:93467246-93467326 1.0000 80 chr22:37468161-37468241 1.0000 80 chr2:242605271-242605351 1.0000 80 chr2:45660661-45660741 1.0000 80 chr7:101160794-101160874 1.0000 80 chr19:765370-765450 1.0000 80 chr17:80217984-80218064 1.0000 80 chr9:72046842-72046922 1.0000 80 chr4:80927145-80927225 1.0000 80 chr7:157726166-157726246 1.0000 80 chr7:158939430-158939510 1.0000 80 chr2:111568150-111568230 1.0000 80 chr13:114754493-11475457 1.0000 80 chr10:126030589-12603066 1.0000 80 chr17:74273741-74273821 1.0000 80 chr11:65508826-65508906 1.0000 80 chr1:149606016-149606096 1.0000 80 chr3:195872136-195872216 1.0000 80 chr7:72068229-72068309 1.0000 80 chr1:117724426-117724506 1.0000 80 chr1:17007435-17007515 1.0000 80 chr11:100580119-10058019 1.0000 80 chr11:1285822-1285902 1.0000 80 chr13:114755020-11475510 1.0000 80 chr4:603359-603439 1.0000 80 chr19:2440718-2440798 1.0000 80 chr5:64086164-64086244 1.0000 80 chr20:34622995-34623075 1.0000 80 chr19:46914930-46915010 1.0000 80 chr15:38800965-38801045 1.0000 80 chr5:80112536-80112616 1.0000 80 chr12:131613682-13161376 1.0000 80 chr8:15274606-15274686 1.0000 80 chr6:170166015-170166095 1.0000 80 chr6:149765974-149766054 1.0000 80 chr12:111734959-11173503 1.0000 80 chrX:63615368-63615448 1.0000 80 chr20:61888950-61889030 1.0000 80 chr6:1704243-1704323 1.0000 80 chr19:54664439-54664519 1.0000 80 chr3:71099930-71100010 1.0000 80 chr7:151406890-151406970 1.0000 80 chr17:46059810-46059890 1.0000 80 chr16:85381809-85381889 1.0000 80 chr19:56670529-56670609 1.0000 80 chr13:114753547-11475362 1.0000 80 chr12:117564363-11756444 1.0000 80 chr20:52675557-52675637 1.0000 80 chr17:19091380-19091460 1.0000 80 chr20:55986051-55986131 1.0000 80 chr6:147312434-147312514 1.0000 80 chr11:102524798-10252487 1.0000 80 chr19:10117821-10117901 1.0000 80 chr16:27879184-27879264 1.0000 80 chr14:29299349-29299429 1.0000 80 chr19:55038381-55038461 1.0000 80 chr22:19165314-19165394 1.0000 80 chr1:92371919-92371999 1.0000 80 chr9:76484390-76484470 1.0000 80 chr11:125840563-12584064 1.0000 80 chr7:66675714-66675794 1.0000 80 chr11:134314443-13431452 1.0000 80 chr3:72387399-72387479 1.0000 80 chr16:85380057-85380137 1.0000 80 chr19:48321476-48321556 1.0000 80 chr20:51765805-51765885 1.0000 80 chr1:232941068-232941148 1.0000 80 chr9:6413115-6413195 1.0000 80 chr13:114753751-11475383 1.0000 80 chr14:30766259-30766339 1.0000 80 chr15:91382426-91382506 1.0000 80 chr17:18585670-18585750 1.0000 80 chr1:11238513-11238593 1.0000 80 chr20:58405228-58405308 1.0000 80 chr19:3914392-3914472 1.0000 80 chr22:23605023-23605103 1.0000 80 chr12:117566148-11756622 1.0000 80 chr4:110657025-110657105 1.0000 80 chr19:3382724-3382804 1.0000 80 chr14:100705133-10070521 1.0000 80 chr17:19015581-19015661 1.0000 80 chr1:205678465-205678545 1.0000 80 chr1:231473961-231474041 1.0000 80 chr1:39249444-39249524 1.0000 80 chr14:71787003-71787083 1.0000 80 chr1:44443500-44443580 1.0000 80 chr12:121342447-12134252 1.0000 80 chr22:21314063-21314143 1.0000 80 chr16:30411985-30412065 1.0000 80 chr8:67940856-67940936 1.0000 80 chr21:46576088-46576168 1.0000 80 chr17:40850476-40850556 1.0000 80 chr1:104068462-104068542 1.0000 80 chr7:129592056-129592136 1.0000 80 chr1:231147217-231147297 1.0000 80 chr11:69965713-69965793 1.0000 80 chr3:160116981-160117061 1.0000 80 chr12:27091316-27091396 1.0000 80 chr2:54483403-54483483 1.0000 80 chr10:135186889-13518696 1.0000 80 chr6:44025301-44025381 1.0000 80 chr19:41130842-41130922 1.0000 80 chrX:118986995-118987075 1.0000 80 chr17:7760899-7760979 1.0000 80 chr15:34880659-34880739 1.0000 80 chr15:20545107-20545187 1.0000 80 chr5:89953810-89953890 1.0000 80 chr17:18967125-18967205 1.0000 80 chr16:85495785-85495865 1.0000 80 chr22:19712066-19712146 1.0000 80 chr1:4036106-4036186 1.0000 80 chr16:85380257-85380337 1.0000 80 chr5:139126707-139126787 1.0000 80 chr19:3370565-3370645 1.0000 80 chr5:172108080-172108160 1.0000 80 chr12:69594327-69594407 1.0000 80 chr12:51018917-51018997 1.0000 80 chr16:81649190-81649270 1.0000 80 chr12:111875728-11187580 1.0000 80 chr6:3196044-3196124 1.0000 80 chr12:49351290-49351370 1.0000 80 chr17:77801153-77801233 1.0000 80 chr10:72464283-72464363 1.0000 80 chr10:103124617-10312469 1.0000 80 chr18:20991259-20991339 1.0000 80 chr22:35627067-35627147 1.0000 80 chr19:10759167-10759247 1.0000 80 chr7:157318294-157318374 1.0000 80 chr17:4843549-4843629 1.0000 80 chr21:45158612-45158692 1.0000 80 chr10:102820483-10282056 1.0000 80 chr18:60732541-60732621 1.0000 80 chr17:4167264-4167344 1.0000 80 chrX:151903169-151903249 1.0000 80 chr12:29534127-29534207 1.0000 80 chr5:179245097-179245177 1.0000 80 chr1:155054211-155054291 1.0000 80 chr13:115047211-11504729 1.0000 80 chr7:76255807-76255887 1.0000 80 chr6:97731133-97731213 1.0000 80 chr3:191143196-191143276 1.0000 80 chr5:139493591-139493671 1.0000 80 chrX:53711156-53711236 1.0000 80 chr1:207226279-207226359 1.0000 80 chr19:2362060-2362140 1.0000 80 chr4:6615517-6615597 1.0000 80 chr6:108279314-108279394 1.0000 80 chr1:47890102-47890182 1.0000 80 chr15:43462201-43462281 1.0000 80 chr17:53046029-53046109 1.0000 80 chr7:72832791-72832871 1.0000 80 chr1:245508941-245509021 1.0000 80 chr8:103766762-103766842 1.0000 80 chr22:19709377-19709457 1.0000 80 chr10:112064676-11206475 1.0000 80 chr13:79980363-79980443 1.0000 80 chr5:122278446-122278526 1.0000 80 chr4:8545460-8545540 1.0000 80 chr3:49131507-49131587 1.0000 80 chr7:157085152-157085232 1.0000 80 chr16:85853126-85853206 1.0000 80 chr19:3154621-3154701 1.0000 80 chr1:151712156-151712236 1.0000 80 chr22:50578731-50578811 1.0000 80 chr4:68267711-68267791 1.0000 80 chr11:13484822-13484902 1.0000 80 chr2:219773761-219773841 1.0000 80 chr10:49862926-49863006 1.0000 80 chr1:33764399-33764479 1.0000 80 chr2:220363541-220363621 1.0000 80 chr9:102007091-102007171 1.0000 80 chr16:88280457-88280537 1.0000 80 chr15:78730438-78730518 1.0000 80 chr18:34481273-34481353 1.0000 80 chr19:47818462-47818542 1.0000 80 chr1:45479098-45479178 1.0000 80 chr10:86093672-86093752 1.0000 80 chr2:225450207-225450287 1.0000 80 chr6:14108497-14108577 1.0000 80 chr3:41643768-41643848 1.0000 80 chr9:88555890-88555970 1.0000 80 chr1:16839584-16839664 1.0000 80 chr17:5390424-5390504 1.0000 80 chr4:103749110-103749190 1.0000 80 chr1:114931571-114931651 1.0000 80 chr22:23282943-23283023 1.0000 80 chr16:54908077-54908157 1.0000 80 chr6:8166539-8166619 1.0000 80 chr12:57940972-57941052 1.0000 80 chr3:197765840-197765920 1.0000 80 chr6:147981723-147981803 1.0000 80 chr5:79657061-79657141 1.0000 80 chr22:21435557-21435637 1.0000 80 chr16:81611638-81611718 1.0000 80 chr13:114873772-11487385 1.0000 80 chr9:138033381-138033461 1.0000 80 chr10:3801707-3801787 1.0000 80 chr5:112267325-112267405 1.0000 80 chr19:2156458-2156538 1.0000 80 chrX:41193082-41193162 1.0000 80 chr22:23333354-23333434 1.0000 80 chr4:169457767-169457847 1.0000 80 chr1:149514148-149514228 1.0000 80 chr3:137893763-137893843 1.0000 80 chr12:131889584-13188966 1.0000 80 chr22:19981655-19981735 1.0000 80 chr21:44580130-44580210 1.0000 80 chr12:104882282-10488236 1.0000 80 chr3:128215009-128215089 1.0000 80 chr22:20037590-20037670 1.0000 80 chr19:13180246-13180326 1.0000 80 chr22:23608194-23608274 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ARHGAP35/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ARHGAP35.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.246 C 0.265 G 0.247 T 0.241 Background letter frequencies (from file dataset with add-one prior applied): A 0.246 C 0.265 G 0.247 T 0.241 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTCGCGA MEME-1 width = 8 sites = 62 llr = 606 E-value = 6.2e-070 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:::::a pos.-specific C :9:a:8:: probability G ::::a:a: matrix T a:a::2:: bits 2.1 * 1.8 * *** ** 1.6 * *** ** 1.4 ***** ** Relative 1.2 ******** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCGCGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:137893763-137893843 27 1.62e-05 GGTTTCCAGA TCTCGCGA GAGAGGGACC chr4:169457767-169457847 41 1.62e-05 aaccatcaga tctcgcga gaactcactc chrX:41193082-41193162 35 1.62e-05 AGACGCAAGT TCTCGCGA GATCTCGAGA chr6:147981723-147981803 45 1.62e-05 ccctcgctgt tctcgcga tagtgagaga chr12:57940972-57941052 3 1.62e-05 AG TCTCGCGA CAGCAGTAGC chr4:103749110-103749190 10 1.62e-05 GGAGACGAC TCTCGCGA GAACTTCGTG chr9:88555890-88555970 29 1.62e-05 TAACTTCCGG TCTCGCGA TCGTCTCTAA chr2:225450207-225450287 35 1.62e-05 GACGCTCAGA TCTCGCGA GAAGAGGGCG chr2:220363541-220363621 40 1.62e-05 GCGAATGAGT TCTCGCGA CTTGCGAGAA chr11:13484822-13484902 39 1.62e-05 CCAGCAGCGT TCTCGCGA GAACGGTGCT chr3:49131507-49131587 14 1.62e-05 CGATTGCTCC TCTCGCGA TAATCGGGGC chr13:79980363-79980443 15 1.62e-05 TGCCGGTAAA TCTCGCGA GAATTGATGA chr10:112064676-11206475 42 1.62e-05 GACGGTGAAG TCTCGCGA GAAATACAAA chr17:53046029-53046109 27 1.62e-05 AGAGGTCAAA TCTCGCGA GGCGTGCTCC chr1:207226279-207226359 49 1.62e-05 AATAGTCTAC TCTCGCGA GAGTCAGAAA chr5:139493591-139493671 36 1.62e-05 CTCCCGCAGA TCTCGCGA GAGTGGCTGA chr6:97731133-97731213 39 1.62e-05 CCCCACGAAT TCTCGCGA GAGTCCGTCA chr12:29534127-29534207 56 1.62e-05 AATGTACAGA TCTCGCGA TATTCCCTTT chr17:4167264-4167344 49 1.62e-05 AATCACCAAG TCTCGCGA GAATCGCGGG chr10:102820483-10282056 50 1.62e-05 CTGTTCTGAT TCTCGCGA CAGTTGCGAG chr17:4843549-4843629 5 1.62e-05 GCGC TCTCGCGA TAGACACAGC chr12:49351290-49351370 58 1.62e-05 TAGCGGCAGT TCTCGCGA GACCCATCAC chr6:3196044-3196124 9 1.62e-05 caaccaga tctcgcga gaactcactc chr17:7760899-7760979 28 1.62e-05 ACGGCACAGA TCTCGCGA GCTTCTCCTA chrX:118986995-118987075 43 1.62e-05 CCTGCCAAGC TCTCGCGA GACTTGGGCC chr2:54483403-54483483 25 1.62e-05 CACCCCTCAG TCTCGCGA CACTCActcc chr12:27091316-27091396 73 1.62e-05 AGGAAAGAAA TCTCGCGA chr16:30411985-30412065 53 1.62e-05 CTGGACGGGT TCTCGCGA GATCGTAAGC chr14:71787003-71787083 25 1.62e-05 CCGCCGCTTC TCTCGCGA GACTTGTGCG chr17:19015581-19015661 61 1.62e-05 CGAAAACCTT TCTCGCGA CATTGCCAAG chr14:100705133-10070521 23 1.62e-05 AGCGCGGAAG TCTCGCGA GGCCGGGCCC chr17:18585670-18585750 59 1.62e-05 GCTCCGTCCG TCTCGCGA GAGTATGAGG chr9:6413115-6413195 32 1.62e-05 CCGGCGTGGA TCTCGCGA GATCCGGCTT chr1:232941068-232941148 18 1.62e-05 CTTCCGCAAA TCTCGCGA GATAGCAGGC chr1:92371919-92371999 3 1.62e-05 CA TCTCGCGA gaaccacatg chr16:27879184-27879264 51 1.62e-05 TCCTTGCGTT TCTCGCGA GACCAGGCCC chr20:52675557-52675637 43 1.62e-05 aaccatcaga tctcgcga gactcactca chr8:15274606-15274686 45 1.62e-05 gtgagtgcgt tctcgcga gatctgtttg chr7:101160794-101160874 31 1.62e-05 aatcatcaga tctcgcga gacttactca chr2:232759799-232759879 58 1.62e-05 gtgagtgcat tctcgcga gatctgctca chr16:54908077-54908157 40 3.10e-05 aacaaccaga tctcgtga gaactcactc chr4:8545460-8545540 45 3.10e-05 ttgagtgagt tctcgtga tattgagtga chr1:245508941-245509021 33 3.10e-05 ttgctgctgt tctcgtga tagtgagtga chr3:191143196-191143276 51 3.10e-05 cccgtgctgt tctcgtga tagtgaataa chr22:35627067-35627147 24 3.10e-05 aaccatcaga tctcgtga gaactcactc chr5:172108080-172108160 38 3.10e-05 aacaaccaga tctcgtga gaactcgcta chr1:4036106-4036186 25 3.10e-05 ccaatgctgt tctcgtga tagtgagtga chr14:30766259-30766339 27 3.10e-05 aacaaccaga tctcgtga gaactcacgc chr11:134314443-13431452 58 3.10e-05 aaccaccaga tctcgtga gacttactca chr11:1285822-1285902 34 3.10e-05 aaccaccaga tctcgtga gaattcactc chr2:219773761-219773841 39 4.60e-05 GAAGACGCGC TATCGCGA GATCGGTGGG chr15:34880659-34880739 53 4.60e-05 actcacccac tatcgcga gaacagcctg chr19:55038381-55038461 26 4.60e-05 GATTCCCTCC TATCGCGA GATCTTCACC chr14:29299349-29299429 45 4.60e-05 tggagtgcag tatcgcga tatcggttcg chrX:63615368-63615448 25 4.60e-05 CGAAAGCTCC TATCGCGA CACTTTGACC chr15:78730438-78730518 45 6.23e-05 TGTCCGACGA TCTCGCGG GAGTTAGGCG chr1:231473961-231474041 29 6.23e-05 TTCCGCGAAC TCTCGCGG GATTGACGGG chr7:129592056-129592136 7 9.11e-05 AGGCCG TCTCGGGA GTCCAAACGT chr19:3914392-3914472 12 1.06e-04 acttactcac tgtcgcga gaatagcaca chr17:18967125-18967205 17 1.58e-04 CGAAAACCTT TCTCGCTA CACTGCCAAG chr10:135186889-13518696 50 1.58e-04 ACCAGGCGGC CCTCGCGA GATCAGCCCG chr3:160116981-160117061 46 1.58e-04 CCCTTCCTCT TCCCGCGA TACTTCTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:137893763-137893843 1.6e-05 26_[+1]_46 chr4:169457767-169457847 1.6e-05 40_[+1]_32 chrX:41193082-41193162 1.6e-05 34_[+1]_38 chr6:147981723-147981803 1.6e-05 44_[+1]_28 chr12:57940972-57941052 1.6e-05 2_[+1]_70 chr4:103749110-103749190 1.6e-05 9_[+1]_63 chr9:88555890-88555970 1.6e-05 28_[+1]_44 chr2:225450207-225450287 1.6e-05 34_[+1]_38 chr2:220363541-220363621 1.6e-05 39_[+1]_33 chr11:13484822-13484902 1.6e-05 38_[+1]_34 chr3:49131507-49131587 1.6e-05 13_[+1]_59 chr13:79980363-79980443 1.6e-05 14_[+1]_58 chr10:112064676-11206475 1.6e-05 41_[+1]_31 chr17:53046029-53046109 1.6e-05 26_[+1]_46 chr1:207226279-207226359 1.6e-05 48_[+1]_24 chr5:139493591-139493671 1.6e-05 35_[+1]_37 chr6:97731133-97731213 1.6e-05 38_[+1]_34 chr12:29534127-29534207 1.6e-05 55_[+1]_17 chr17:4167264-4167344 1.6e-05 48_[+1]_24 chr10:102820483-10282056 1.6e-05 49_[+1]_23 chr17:4843549-4843629 1.6e-05 4_[+1]_68 chr12:49351290-49351370 1.6e-05 57_[+1]_15 chr6:3196044-3196124 1.6e-05 8_[+1]_64 chr17:7760899-7760979 1.6e-05 27_[+1]_45 chrX:118986995-118987075 1.6e-05 42_[+1]_30 chr2:54483403-54483483 1.6e-05 24_[+1]_48 chr12:27091316-27091396 1.6e-05 72_[+1] chr16:30411985-30412065 1.6e-05 52_[+1]_20 chr14:71787003-71787083 1.6e-05 24_[+1]_48 chr17:19015581-19015661 1.6e-05 60_[+1]_12 chr14:100705133-10070521 1.6e-05 22_[+1]_50 chr17:18585670-18585750 1.6e-05 58_[+1]_14 chr9:6413115-6413195 1.6e-05 31_[+1]_41 chr1:232941068-232941148 1.6e-05 17_[+1]_55 chr1:92371919-92371999 1.6e-05 2_[+1]_70 chr16:27879184-27879264 1.6e-05 50_[+1]_22 chr20:52675557-52675637 1.6e-05 42_[+1]_30 chr8:15274606-15274686 1.6e-05 44_[+1]_28 chr7:101160794-101160874 1.6e-05 30_[+1]_42 chr2:232759799-232759879 1.6e-05 57_[+1]_15 chr16:54908077-54908157 3.1e-05 39_[+1]_33 chr4:8545460-8545540 3.1e-05 44_[+1]_28 chr1:245508941-245509021 3.1e-05 32_[+1]_40 chr3:191143196-191143276 3.1e-05 50_[+1]_22 chr22:35627067-35627147 3.1e-05 23_[+1]_49 chr5:172108080-172108160 3.1e-05 37_[+1]_35 chr1:4036106-4036186 3.1e-05 24_[+1]_48 chr14:30766259-30766339 3.1e-05 26_[+1]_46 chr11:134314443-13431452 3.1e-05 57_[+1]_15 chr11:1285822-1285902 3.1e-05 33_[+1]_39 chr2:219773761-219773841 4.6e-05 38_[+1]_34 chr15:34880659-34880739 4.6e-05 52_[+1]_20 chr19:55038381-55038461 4.6e-05 25_[+1]_47 chr14:29299349-29299429 4.6e-05 44_[+1]_28 chrX:63615368-63615448 4.6e-05 24_[+1]_48 chr15:78730438-78730518 6.2e-05 44_[+1]_28 chr1:231473961-231474041 6.2e-05 28_[+1]_44 chr7:129592056-129592136 9.1e-05 6_[+1]_66 chr19:3914392-3914472 0.00011 11_[+1]_61 chr17:18967125-18967205 0.00016 16_[+1]_56 chr10:135186889-13518696 0.00016 49_[+1]_23 chr3:160116981-160117061 0.00016 45_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCGCGA width=8 seqs=62 chr3:137893763-137893843 ( 27) TCTCGCGA 1 chr4:169457767-169457847 ( 41) TCTCGCGA 1 chrX:41193082-41193162 ( 35) TCTCGCGA 1 chr6:147981723-147981803 ( 45) TCTCGCGA 1 chr12:57940972-57941052 ( 3) TCTCGCGA 1 chr4:103749110-103749190 ( 10) TCTCGCGA 1 chr9:88555890-88555970 ( 29) TCTCGCGA 1 chr2:225450207-225450287 ( 35) TCTCGCGA 1 chr2:220363541-220363621 ( 40) TCTCGCGA 1 chr11:13484822-13484902 ( 39) TCTCGCGA 1 chr3:49131507-49131587 ( 14) TCTCGCGA 1 chr13:79980363-79980443 ( 15) TCTCGCGA 1 chr10:112064676-11206475 ( 42) TCTCGCGA 1 chr17:53046029-53046109 ( 27) TCTCGCGA 1 chr1:207226279-207226359 ( 49) TCTCGCGA 1 chr5:139493591-139493671 ( 36) TCTCGCGA 1 chr6:97731133-97731213 ( 39) TCTCGCGA 1 chr12:29534127-29534207 ( 56) TCTCGCGA 1 chr17:4167264-4167344 ( 49) TCTCGCGA 1 chr10:102820483-10282056 ( 50) TCTCGCGA 1 chr17:4843549-4843629 ( 5) TCTCGCGA 1 chr12:49351290-49351370 ( 58) TCTCGCGA 1 chr6:3196044-3196124 ( 9) TCTCGCGA 1 chr17:7760899-7760979 ( 28) TCTCGCGA 1 chrX:118986995-118987075 ( 43) TCTCGCGA 1 chr2:54483403-54483483 ( 25) TCTCGCGA 1 chr12:27091316-27091396 ( 73) TCTCGCGA 1 chr16:30411985-30412065 ( 53) TCTCGCGA 1 chr14:71787003-71787083 ( 25) TCTCGCGA 1 chr17:19015581-19015661 ( 61) TCTCGCGA 1 chr14:100705133-10070521 ( 23) TCTCGCGA 1 chr17:18585670-18585750 ( 59) TCTCGCGA 1 chr9:6413115-6413195 ( 32) TCTCGCGA 1 chr1:232941068-232941148 ( 18) TCTCGCGA 1 chr1:92371919-92371999 ( 3) TCTCGCGA 1 chr16:27879184-27879264 ( 51) TCTCGCGA 1 chr20:52675557-52675637 ( 43) TCTCGCGA 1 chr8:15274606-15274686 ( 45) TCTCGCGA 1 chr7:101160794-101160874 ( 31) TCTCGCGA 1 chr2:232759799-232759879 ( 58) TCTCGCGA 1 chr16:54908077-54908157 ( 40) TCTCGTGA 1 chr4:8545460-8545540 ( 45) TCTCGTGA 1 chr1:245508941-245509021 ( 33) TCTCGTGA 1 chr3:191143196-191143276 ( 51) TCTCGTGA 1 chr22:35627067-35627147 ( 24) TCTCGTGA 1 chr5:172108080-172108160 ( 38) TCTCGTGA 1 chr1:4036106-4036186 ( 25) TCTCGTGA 1 chr14:30766259-30766339 ( 27) TCTCGTGA 1 chr11:134314443-13431452 ( 58) TCTCGTGA 1 chr11:1285822-1285902 ( 34) TCTCGTGA 1 chr2:219773761-219773841 ( 39) TATCGCGA 1 chr15:34880659-34880739 ( 53) TATCGCGA 1 chr19:55038381-55038461 ( 26) TATCGCGA 1 chr14:29299349-29299429 ( 45) TATCGCGA 1 chrX:63615368-63615448 ( 25) TATCGCGA 1 chr15:78730438-78730518 ( 45) TCTCGCGG 1 chr1:231473961-231474041 ( 29) TCTCGCGG 1 chr7:129592056-129592136 ( 7) TCTCGGGA 1 chr19:3914392-3914472 ( 12) TGTCGCGA 1 chr17:18967125-18967205 ( 17) TCTCGCTA 1 chr10:135186889-13518696 ( 50) CCTCGCGA 1 chr3:160116981-160117061 ( 46) TCCCGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.15962 E= 6.2e-070 -1260 -404 -1260 203 -161 177 -393 -1260 -1260 -404 -1260 203 -1260 191 -1260 -1260 -1260 -1260 202 -1260 -1260 163 -393 -58 -1260 -1260 199 -390 197 -1260 -293 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 6.2e-070 0.000000 0.016129 0.000000 0.983871 0.080645 0.903226 0.016129 0.000000 0.000000 0.016129 0.000000 0.983871 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.822581 0.016129 0.161290 0.000000 0.000000 0.983871 0.016129 0.967742 0.000000 0.032258 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 regular expression -------------------------------------------------------------------------------- TCTCGCGA -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAKKGAY MEME-2 width = 8 sites = 48 llr = 396 E-value = 1.5e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::a1 pos.-specific C :::1:::3 probability G :a:439:1 matrix T a::571:5 bits 2.1 *** * 1.8 *** * 1.6 *** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 *** *** (11.9 bits) 0.8 *** *** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGATTGAT consensus GG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:72387399-72387479 28 1.25e-05 CAAGGTTAGA tgattgat tgactgactg chr7:72068229-72068309 55 1.25e-05 AGATGACAGA Tgattgat ggatggacag chr7:154609444-154609524 32 1.25e-05 ATGTCCTCAG TGATTGAT GGATGATGTC chr19:2362060-2362140 56 2.52e-05 tgtggggtca tgagtgat cgtttatgtt chr16:85380257-85380337 38 2.52e-05 ggtggatgga tgagtgat tgacaggtag chr1:231147217-231147297 17 2.52e-05 TTGTGTAGGC TGAGTGAT GATAGCGCAG chr7:151406890-151406970 27 2.52e-05 tgtgatgctg tgagtgat gtgtgacatt chr15:38800965-38801045 52 2.52e-05 CCATTCCCCA TGAGTGAT AACCAGCTTT chr17:80217984-80218064 29 2.52e-05 gatggtgtac tgagtgat gtgactgatg chr17:80218434-80218514 6 2.52e-05 TGTAC TGAGTGAT GGGACTGATG chr21:47234591-47234671 30 2.52e-05 tgatgagtgg tgagtgat gagtgagtgg chr21:47235879-47235959 1 2.52e-05 . tgagtgat gagtggtgag chr9:138033381-138033461 5 5.17e-05 tgaa tgatggat ggatagatga chr19:3154621-3154701 38 5.17e-05 ggtggatgga tgatggat ggatggatag chr11:69965713-69965793 20 5.17e-05 gaggaatgaa tgatggat gacgggtgga chr16:85380057-85380137 19 5.17e-05 gatgggtgga tgatggat ggatggatga chr4:603359-603439 33 5.17e-05 ACAAGGAAGA TGATTGAC ACATGGAAGA chr3:195872136-195872216 31 5.17e-05 CACCTGGCTC TGATTGAC AGGCGCACAC chr7:157726166-157726246 23 5.17e-05 TGAGTCACTC TGATTGAC AGCTTTAGAG chr22:37468161-37468241 40 5.17e-05 aatggatgga tgatggat gaacggatga chr22:37468801-37468881 5 5.17e-05 tgga tgatggat ggatggatga chr7:16438965-16439045 16 5.17e-05 ATGACTGACA TGATTGAC GTGACACATT chr12:113875299-11387537 36 5.17e-05 ATGAACATGT TGATGGAT GGACAGACAG chr7:568217-568297 13 5.17e-05 aatagacaga tgatggat ggatggataa chr19:415440-415520 30 5.17e-05 aatgggttac tgatggat ttatagatgg chr4:68267711-68267791 9 7.88e-05 ATTTGTAG TGAGTGAC AACTTGTTTG chr11:125840563-12584064 63 7.88e-05 CAGTAAATGT TGAGTGAC AACAAATGAC chr12:131613682-13161376 30 7.88e-05 TGTCTGAGTG TGAGTGAC AGGCCCGCCC chr22:19981655-19981735 48 1.06e-04 acggacagat tgatggaC AGGTCGGAGG chr20:61888950-61889030 37 1.06e-04 cggaggacag tgatggac agtggaggac chr20:61888521-61888601 26 1.06e-04 cagagggcag tgatggac agtaatggac chr3:191143196-191143276 20 1.18e-04 tggtgggagg tgattgaa tcatcgggcg chr16:88280457-88280537 33 1.46e-04 agtgaatgaa tgagtgag tgaatgagtg chr4:8545460-8545540 36 1.46e-04 ctcgtgatat tgagtgag ttctcgtgat chr1:245508941-245509021 44 1.46e-04 ctcgtgatag tgagtgag ttctcgtgag chr1:4036106-4036186 36 1.46e-04 ctcgtgatag tgagtgag ttctcacgag chr10:86093672-86093752 42 1.73e-04 agtAGAGGAA TGAGTGAA TATAGGATGA chr15:58958051-58958131 12 1.73e-04 ctcatcatca tgactgat gacatcattc chr19:765370-765450 28 1.86e-04 AGACCCTATC TGATGGAG GAGGCATCTG chr20:58405228-58405308 13 1.99e-04 TGTGCGTGTC TGATGGAA GAGGGTATGA chr1:151712156-151712236 67 2.54e-04 gaatTTTGGG TGACTGAC AGTTCC chr7:157318294-157318374 62 2.54e-04 GTGCACCGTC TGAGGGAA AAGAGGGCCG chr15:34880659-34880739 69 2.54e-04 gagaacagcc tgagggaa cact chr9:72046842-72046922 37 2.54e-04 ACAGCAGTGT TGACTGAC AGCAGTGATA chr3:71099930-71100010 24 2.67e-04 CCTGTCATGT TGATTTAT GGGCGCATCA chr20:51810990-51811070 19 2.67e-04 TTCAAAGACA TGATTTAT GGTTAGTCTC chr1:17007435-17007515 16 3.09e-04 AACTGTGGGG TGACTGAG AGTATCCAAA chr1:16839584-16839664 37 3.34e-04 TAAAAAGAGG TGATTTAC AGTGCTATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:72387399-72387479 1.2e-05 27_[+2]_45 chr7:72068229-72068309 1.2e-05 54_[+2]_18 chr7:154609444-154609524 1.2e-05 31_[+2]_41 chr19:2362060-2362140 2.5e-05 55_[+2]_17 chr16:85380257-85380337 2.5e-05 37_[+2]_35 chr1:231147217-231147297 2.5e-05 16_[+2]_56 chr7:151406890-151406970 2.5e-05 26_[+2]_46 chr15:38800965-38801045 2.5e-05 51_[+2]_21 chr17:80217984-80218064 2.5e-05 28_[+2]_44 chr17:80218434-80218514 2.5e-05 5_[+2]_67 chr21:47234591-47234671 2.5e-05 29_[+2]_43 chr21:47235879-47235959 2.5e-05 [+2]_72 chr9:138033381-138033461 5.2e-05 4_[+2]_68 chr19:3154621-3154701 5.2e-05 37_[+2]_35 chr11:69965713-69965793 5.2e-05 19_[+2]_53 chr16:85380057-85380137 5.2e-05 18_[+2]_54 chr4:603359-603439 5.2e-05 32_[+2]_40 chr3:195872136-195872216 5.2e-05 30_[+2]_42 chr7:157726166-157726246 5.2e-05 22_[+2]_50 chr22:37468161-37468241 5.2e-05 39_[+2]_33 chr22:37468801-37468881 5.2e-05 4_[+2]_68 chr7:16438965-16439045 5.2e-05 15_[+2]_57 chr12:113875299-11387537 5.2e-05 35_[+2]_37 chr7:568217-568297 5.2e-05 12_[+2]_60 chr19:415440-415520 5.2e-05 29_[+2]_43 chr4:68267711-68267791 7.9e-05 8_[+2]_64 chr11:125840563-12584064 7.9e-05 62_[+2]_10 chr12:131613682-13161376 7.9e-05 29_[+2]_43 chr22:19981655-19981735 0.00011 47_[+2]_25 chr20:61888950-61889030 0.00011 36_[+2]_36 chr20:61888521-61888601 0.00011 25_[+2]_47 chr3:191143196-191143276 0.00012 19_[+2]_53 chr16:88280457-88280537 0.00015 32_[+2]_40 chr4:8545460-8545540 0.00015 35_[+2]_37 chr1:245508941-245509021 0.00015 43_[+2]_29 chr1:4036106-4036186 0.00015 35_[+2]_37 chr10:86093672-86093752 0.00017 41_[+2]_31 chr15:58958051-58958131 0.00017 11_[+2]_61 chr19:765370-765450 0.00019 27_[+2]_45 chr20:58405228-58405308 0.0002 12_[+2]_60 chr1:151712156-151712236 0.00025 66_[+2]_6 chr7:157318294-157318374 0.00025 61_[+2]_11 chr15:34880659-34880739 0.00025 68_[+2]_4 chr9:72046842-72046922 0.00025 36_[+2]_36 chr3:71099930-71100010 0.00027 23_[+2]_49 chr20:51810990-51811070 0.00027 18_[+2]_54 chr1:17007435-17007515 0.00031 15_[+2]_57 chr1:16839584-16839664 0.00033 36_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAKKGAY width=8 seqs=48 chr3:72387399-72387479 ( 28) TGATTGAT 1 chr7:72068229-72068309 ( 55) TGATTGAT 1 chr7:154609444-154609524 ( 32) TGATTGAT 1 chr19:2362060-2362140 ( 56) TGAGTGAT 1 chr16:85380257-85380337 ( 38) TGAGTGAT 1 chr1:231147217-231147297 ( 17) TGAGTGAT 1 chr7:151406890-151406970 ( 27) TGAGTGAT 1 chr15:38800965-38801045 ( 52) TGAGTGAT 1 chr17:80217984-80218064 ( 29) TGAGTGAT 1 chr17:80218434-80218514 ( 6) TGAGTGAT 1 chr21:47234591-47234671 ( 30) TGAGTGAT 1 chr21:47235879-47235959 ( 1) TGAGTGAT 1 chr9:138033381-138033461 ( 5) TGATGGAT 1 chr19:3154621-3154701 ( 38) TGATGGAT 1 chr11:69965713-69965793 ( 20) TGATGGAT 1 chr16:85380057-85380137 ( 19) TGATGGAT 1 chr4:603359-603439 ( 33) TGATTGAC 1 chr3:195872136-195872216 ( 31) TGATTGAC 1 chr7:157726166-157726246 ( 23) TGATTGAC 1 chr22:37468161-37468241 ( 40) TGATGGAT 1 chr22:37468801-37468881 ( 5) TGATGGAT 1 chr7:16438965-16439045 ( 16) TGATTGAC 1 chr12:113875299-11387537 ( 36) TGATGGAT 1 chr7:568217-568297 ( 13) TGATGGAT 1 chr19:415440-415520 ( 30) TGATGGAT 1 chr4:68267711-68267791 ( 9) TGAGTGAC 1 chr11:125840563-12584064 ( 63) TGAGTGAC 1 chr12:131613682-13161376 ( 30) TGAGTGAC 1 chr22:19981655-19981735 ( 48) TGATGGAC 1 chr20:61888950-61889030 ( 37) TGATGGAC 1 chr20:61888521-61888601 ( 26) TGATGGAC 1 chr3:191143196-191143276 ( 20) TGATTGAA 1 chr16:88280457-88280537 ( 33) TGAGTGAG 1 chr4:8545460-8545540 ( 36) TGAGTGAG 1 chr1:245508941-245509021 ( 44) TGAGTGAG 1 chr1:4036106-4036186 ( 36) TGAGTGAG 1 chr10:86093672-86093752 ( 42) TGAGTGAA 1 chr15:58958051-58958131 ( 12) TGACTGAT 1 chr19:765370-765450 ( 28) TGATGGAG 1 chr20:58405228-58405308 ( 13) TGATGGAA 1 chr1:151712156-151712236 ( 67) TGACTGAC 1 chr7:157318294-157318374 ( 62) TGAGGGAA 1 chr15:34880659-34880739 ( 69) TGAGGGAA 1 chr9:72046842-72046922 ( 37) TGACTGAC 1 chr3:71099930-71100010 ( 24) TGATTTAT 1 chr20:51810990-51811070 ( 19) TGATTTAT 1 chr1:17007435-17007515 ( 16) TGACTGAG 1 chr1:16839584-16839664 ( 37) TGATTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.5e-013 -1223 -1223 -1223 205 -1223 -1223 202 -1223 202 -1223 -1223 -1223 -1223 -167 68 111 -1223 -1223 43 147 -1223 -1223 192 -195 202 -1223 -1223 -1223 -124 3 -98 105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.5e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.395833 0.520833 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.937500 0.062500 1.000000 0.000000 0.000000 0.000000 0.104167 0.270833 0.125000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKKGAY MEME-2 regular expression -------------------------------------------------------------------------------- TGA[TG][TG]GA[TC] -------------------------------------------------------------------------------- Time 8.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CATCCMTC MEME-3 width = 8 sites = 64 llr = 484 E-value = 1.3e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7::15:: pos.-specific C a31873:a probability G :::::2:: matrix T ::922:a: bits 2.1 * 1.8 * ** 1.6 * ** 1.4 * * ** Relative 1.2 * ** ** Entropy 1.0 **** ** (10.9 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATCCATC consensus C TC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:131889584-13188966 31 1.73e-05 cccatccatc catccatc atccatccat chr19:2156458-2156538 65 1.73e-05 cccacccacc catccatc cacccaCC chr21:46576088-46576168 35 1.73e-05 gtcatccatc catccatc cacccaccca chr19:48321476-48321556 41 1.73e-05 tccatccatc catccatc catccatcca chr7:66675714-66675794 40 1.73e-05 tctgtccgtc catccatc catccatccg chr13:114753547-11475362 53 1.73e-05 CCCCTCAGTC CATCCATC ACTCACccat chr19:56670529-56670609 45 1.73e-05 atcatctacc catccatc acccatccgt chr16:85381809-85381889 40 1.73e-05 gtccatcatc catccatc catcatccac chr19:2440718-2440798 5 1.73e-05 catc catccatc catccatcta chr13:114755020-11475510 22 1.73e-05 acccatcact catccatc tatccaccca chr2:111568150-111568230 1 1.73e-05 . catccatc attcatcatc chr19:48272938-48273018 28 1.73e-05 atccatcatc catccatc aatcatccat chr10:105461287-10546136 5 1.73e-05 ccac catccatc catccactac chr3:38128920-38129000 30 1.73e-05 atgctcacac catccatc agcactgaca chr1:228229148-228229228 38 1.73e-05 gtcaatctgc catccatc aatccatcat chr20:51810990-51811070 50 1.73e-05 CTTTCAGCAT CATCCATC AAGTCCTGGT chr16:12515725-12515805 71 1.73e-05 atccgtccat catccatc ac chr12:132649130-13264921 35 1.73e-05 tctatccacc catccatc atccatccag chr12:51018917-51018997 35 3.60e-05 ACATATCTTT CATCCCTC AGCTTTAAAT chr13:114873772-11487385 42 7.21e-05 TGTCACCCCA CATCCGTC ATCCCGTGTC chr13:114753751-11475383 19 7.21e-05 atcactcacc catccgtc cacccattca chr12:93467246-93467326 60 7.21e-05 CTGTCACCAC CATCCGTC TCTAAAACCC chr19:45249643-45249723 43 7.21e-05 acccttattt cctccatc agacccttac chr7:158939430-158939510 44 8.78e-05 atctgcctgt catctatc aatctatcat chr6:1704243-1704323 4 1.04e-04 GCT CATTCATC ACCCTATTCA chr15:58958051-58958131 25 1.04e-04 ctgatgacat cattcatc attcattcat chr2:241137298-241137378 45 1.04e-04 tgtccatcac cattcatc actgtccatc chr10:1541109-1541189 13 1.04e-04 actcattcat cattcatc gctcactcat chr5:79657061-79657141 32 1.24e-04 tccttccttc cctccctc ctttcttctt chr7:72832791-72832871 34 1.24e-04 ttccttcctt cctccctc cctgtctctc chr19:10117821-10117901 58 1.24e-04 CCTCTGACCT CCTCCCTC TGACATTCCC chr19:54664439-54664519 55 1.24e-04 gcctaggcct cctccctc agactcagta chr12:111734959-11173503 53 1.24e-04 AAACACGCCT CCTCCCTC TGATCATCCC chr19:44302322-44302402 70 1.24e-04 GGTCATGCCT CCTCCCTC AGA chr22:23608194-23608274 9 1.59e-04 ggttgtcc catctctc tagtctcctt chr5:112267325-112267405 38 2.08e-04 AGCTCTTGGA CATCAATC ATGCTGTGAC chr12:117564363-11756444 23 2.08e-04 ATGTTGCTGT CATCTGTC ACTGTCTCCT chr11:65508826-65508906 39 2.08e-04 TGTCTCTCAC CATCTGTC CACTGATTGC chr12:117563759-11756383 40 2.08e-04 tcacatcact catctgtc ctgacacctg chr6:164138295-164138375 41 2.08e-04 tgtcACATGT CATCTGtc atttttctct chr13:114754493-11475457 27 2.27e-04 acccatcact cacccatc tgtccatcac chr16:81611638-81611718 43 2.77e-04 atcaccatca ccttcatc accaccatca chr3:197765840-197765920 32 2.77e-04 aacccagcca ccttcatc agcaacccaa chr1:47890102-47890182 57 3.27e-04 CCCGAATACT CCTCTCTC CCCTTTCCCT chr1:155054211-155054291 20 3.27e-04 ctcttccctg cctctctc ggtttctgcg chr19:3370565-3370645 54 3.27e-04 cccttctctc cctctctc cttctctctt chr10:1541927-1542007 13 3.27e-04 actgctcact catcactc acttattact chr22:35939923-35940003 56 3.27e-04 ctctctgcct cctctctc tgactccctg chr19:10759167-10759247 32 3.78e-04 AGGGGGATGA CCTCAATC TTCAACCAAT chr11:102524798-10252487 7 3.78e-04 CACACA CATCAGTC ACCTGTCACA chr1:117724426-117724506 25 3.78e-04 TCAGTGTGGT CATCAGTC AGCGTGGTCA chr2:54483403-54483483 15 3.98e-04 TCGCGACACC CACCCCTC AGTCTCGCGA chr1:151712156-151712236 6 4.38e-04 accca cccccatc aggactgaag chr19:48103288-48103368 60 4.38e-04 ttatctgagt cccccatc gatggacaac chr10:49862926-49863006 21 4.74e-04 ttctctcctc ccttcctc cctttctccc chr16:85853126-85853206 20 4.74e-04 tctctctctc CCttcctc tctttttttt chr3:160116981-160117061 37 4.74e-04 AGTTACGCTC CCTTCCTC TTCCCGCGAT chr20:51765805-51765885 12 5.50e-04 TGACAGGTGT CATTTGTC ACTGGGGCTT chr5:139126707-139126787 37 6.04e-04 tgtctctgtc cctcagtc tctgctcagg chr12:117566148-11756622 29 7.19e-04 atgtcactgt cacctgtc aatgccatgt chr15:91382426-91382506 60 7.19e-04 cgtccagaat caccaatc ccctactgtt chr2:242605271-242605351 40 7.19e-04 cagtcactgt cacctgtc actgtcactg chr5:68345097-68345177 6 7.19e-04 TATGA CACCTGTC TCTCTTTCCT chr1:45479098-45479178 13 8.68e-04 TTACAATAAG CACTTATC CTAACTGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:131889584-13188966 1.7e-05 30_[+3]_42 chr19:2156458-2156538 1.7e-05 64_[+3]_8 chr21:46576088-46576168 1.7e-05 34_[+3]_38 chr19:48321476-48321556 1.7e-05 40_[+3]_32 chr7:66675714-66675794 1.7e-05 39_[+3]_33 chr13:114753547-11475362 1.7e-05 52_[+3]_20 chr19:56670529-56670609 1.7e-05 44_[+3]_28 chr16:85381809-85381889 1.7e-05 39_[+3]_33 chr19:2440718-2440798 1.7e-05 4_[+3]_68 chr13:114755020-11475510 1.7e-05 21_[+3]_51 chr2:111568150-111568230 1.7e-05 [+3]_72 chr19:48272938-48273018 1.7e-05 27_[+3]_45 chr10:105461287-10546136 1.7e-05 4_[+3]_68 chr3:38128920-38129000 1.7e-05 29_[+3]_43 chr1:228229148-228229228 1.7e-05 37_[+3]_35 chr20:51810990-51811070 1.7e-05 49_[+3]_23 chr16:12515725-12515805 1.7e-05 70_[+3]_2 chr12:132649130-13264921 1.7e-05 34_[+3]_38 chr12:51018917-51018997 3.6e-05 34_[+3]_38 chr13:114873772-11487385 7.2e-05 41_[+3]_31 chr13:114753751-11475383 7.2e-05 18_[+3]_54 chr12:93467246-93467326 7.2e-05 59_[+3]_13 chr19:45249643-45249723 7.2e-05 42_[+3]_30 chr7:158939430-158939510 8.8e-05 43_[+3]_29 chr6:1704243-1704323 0.0001 3_[+3]_69 chr15:58958051-58958131 0.0001 24_[+3]_48 chr2:241137298-241137378 0.0001 44_[+3]_28 chr10:1541109-1541189 0.0001 12_[+3]_60 chr5:79657061-79657141 0.00012 31_[+3]_41 chr7:72832791-72832871 0.00012 33_[+3]_39 chr19:10117821-10117901 0.00012 57_[+3]_15 chr19:54664439-54664519 0.00012 54_[+3]_18 chr12:111734959-11173503 0.00012 52_[+3]_20 chr19:44302322-44302402 0.00012 69_[+3]_3 chr22:23608194-23608274 0.00016 8_[+3]_64 chr5:112267325-112267405 0.00021 37_[+3]_35 chr12:117564363-11756444 0.00021 22_[+3]_50 chr11:65508826-65508906 0.00021 38_[+3]_34 chr12:117563759-11756383 0.00021 39_[+3]_33 chr6:164138295-164138375 0.00021 40_[+3]_32 chr13:114754493-11475457 0.00023 26_[+3]_46 chr16:81611638-81611718 0.00028 42_[+3]_30 chr3:197765840-197765920 0.00028 31_[+3]_41 chr1:47890102-47890182 0.00033 56_[+3]_16 chr1:155054211-155054291 0.00033 19_[+3]_53 chr19:3370565-3370645 0.00033 53_[+3]_19 chr10:1541927-1542007 0.00033 12_[+3]_60 chr22:35939923-35940003 0.00033 55_[+3]_17 chr19:10759167-10759247 0.00038 31_[+3]_41 chr11:102524798-10252487 0.00038 6_[+3]_66 chr1:117724426-117724506 0.00038 24_[+3]_48 chr2:54483403-54483483 0.0004 14_[+3]_58 chr1:151712156-151712236 0.00044 5_[+3]_67 chr19:48103288-48103368 0.00044 59_[+3]_13 chr10:49862926-49863006 0.00047 20_[+3]_52 chr16:85853126-85853206 0.00047 19_[+3]_53 chr3:160116981-160117061 0.00047 36_[+3]_36 chr20:51765805-51765885 0.00055 11_[+3]_61 chr5:139126707-139126787 0.0006 36_[+3]_36 chr12:117566148-11756622 0.00072 28_[+3]_44 chr15:91382426-91382506 0.00072 59_[+3]_13 chr2:242605271-242605351 0.00072 39_[+3]_33 chr5:68345097-68345177 0.00072 5_[+3]_67 chr1:45479098-45479178 0.00087 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATCCMTC width=8 seqs=64 chr12:131889584-13188966 ( 31) CATCCATC 1 chr19:2156458-2156538 ( 65) CATCCATC 1 chr21:46576088-46576168 ( 35) CATCCATC 1 chr19:48321476-48321556 ( 41) CATCCATC 1 chr7:66675714-66675794 ( 40) CATCCATC 1 chr13:114753547-11475362 ( 53) CATCCATC 1 chr19:56670529-56670609 ( 45) CATCCATC 1 chr16:85381809-85381889 ( 40) CATCCATC 1 chr19:2440718-2440798 ( 5) CATCCATC 1 chr13:114755020-11475510 ( 22) CATCCATC 1 chr2:111568150-111568230 ( 1) CATCCATC 1 chr19:48272938-48273018 ( 28) CATCCATC 1 chr10:105461287-10546136 ( 5) CATCCATC 1 chr3:38128920-38129000 ( 30) CATCCATC 1 chr1:228229148-228229228 ( 38) CATCCATC 1 chr20:51810990-51811070 ( 50) CATCCATC 1 chr16:12515725-12515805 ( 71) CATCCATC 1 chr12:132649130-13264921 ( 35) CATCCATC 1 chr12:51018917-51018997 ( 35) CATCCCTC 1 chr13:114873772-11487385 ( 42) CATCCGTC 1 chr13:114753751-11475383 ( 19) CATCCGTC 1 chr12:93467246-93467326 ( 60) CATCCGTC 1 chr19:45249643-45249723 ( 43) CCTCCATC 1 chr7:158939430-158939510 ( 44) CATCTATC 1 chr6:1704243-1704323 ( 4) CATTCATC 1 chr15:58958051-58958131 ( 25) CATTCATC 1 chr2:241137298-241137378 ( 45) CATTCATC 1 chr10:1541109-1541189 ( 13) CATTCATC 1 chr5:79657061-79657141 ( 32) CCTCCCTC 1 chr7:72832791-72832871 ( 34) CCTCCCTC 1 chr19:10117821-10117901 ( 58) CCTCCCTC 1 chr19:54664439-54664519 ( 55) CCTCCCTC 1 chr12:111734959-11173503 ( 53) CCTCCCTC 1 chr19:44302322-44302402 ( 70) CCTCCCTC 1 chr22:23608194-23608274 ( 9) CATCTCTC 1 chr5:112267325-112267405 ( 38) CATCAATC 1 chr12:117564363-11756444 ( 23) CATCTGTC 1 chr11:65508826-65508906 ( 39) CATCTGTC 1 chr12:117563759-11756383 ( 40) CATCTGTC 1 chr6:164138295-164138375 ( 41) CATCTGTC 1 chr13:114754493-11475457 ( 27) CACCCATC 1 chr16:81611638-81611718 ( 43) CCTTCATC 1 chr3:197765840-197765920 ( 32) CCTTCATC 1 chr1:47890102-47890182 ( 57) CCTCTCTC 1 chr1:155054211-155054291 ( 20) CCTCTCTC 1 chr19:3370565-3370645 ( 54) CCTCTCTC 1 chr10:1541927-1542007 ( 13) CATCACTC 1 chr22:35939923-35940003 ( 56) CCTCTCTC 1 chr19:10759167-10759247 ( 32) CCTCAATC 1 chr11:102524798-10252487 ( 7) CATCAGTC 1 chr1:117724426-117724506 ( 25) CATCAGTC 1 chr2:54483403-54483483 ( 15) CACCCCTC 1 chr1:151712156-151712236 ( 6) CCCCCATC 1 chr19:48103288-48103368 ( 60) CCCCCATC 1 chr10:49862926-49863006 ( 21) CCTTCCTC 1 chr16:85853126-85853206 ( 20) CCTTCCTC 1 chr3:160116981-160117061 ( 37) CCTTCCTC 1 chr20:51765805-51765885 ( 12) CATTTGTC 1 chr5:139126707-139126787 ( 37) CCTCAGTC 1 chr12:117566148-11756622 ( 29) CACCTGTC 1 chr15:91382426-91382506 ( 60) CACCAATC 1 chr2:242605271-242605351 ( 40) CACCTGTC 1 chr5:68345097-68345177 ( 6) CACCTGTC 1 chr1:45479098-45479178 ( 13) CACTTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.47551 E= 1.3e-011 -1264 191 -1264 -1264 148 24 -1264 -1264 -1264 -92 -1264 183 -1264 164 -1264 -49 -117 131 -1264 -4 107 0 -17 -1264 -1264 -1264 -1264 205 -1264 191 -1264 -1264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 1.3e-011 0.000000 1.000000 0.000000 0.000000 0.687500 0.312500 0.000000 0.000000 0.000000 0.140625 0.000000 0.859375 0.000000 0.828125 0.000000 0.171875 0.109375 0.656250 0.000000 0.234375 0.515625 0.265625 0.218750 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCMTC MEME-3 regular expression -------------------------------------------------------------------------------- C[AC]TC[CT][ACG]TC -------------------------------------------------------------------------------- Time 12.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CCATCATC MEME-4 width = 8 sites = 42 llr = 354 E-value = 2.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::a:: pos.-specific C 89::9:38 probability G ::::1::: matrix T 21:a::72 bits 2.1 ** * 1.8 ** * 1.6 ** * 1.4 **** Relative 1.2 ****** * Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCATCATC consensus T CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:131889584-13188966 49 1.73e-05 atccatccat ccatcatc catccatcca chr16:81611638-81611718 28 1.73e-05 atcaccatca ccatcatc accatcacct chr21:46576088-46576168 6 1.73e-05 cctac ccatcatc acccatcatc chr7:66675714-66675794 59 1.73e-05 atccatccgt ccatcatc tgtctgtgtc chr13:114753547-11475362 3 1.73e-05 ac ccatcatc actcactcct chr19:56670529-56670609 14 1.73e-05 attcatccac ccatcatc cacccatgca chr16:85381809-85381889 32 1.73e-05 atccacctgt ccatcatc catccatcca chr19:2440718-2440798 36 1.73e-05 actcatccat ccatcatc tatctatcca chr2:111568150-111568230 63 1.73e-05 atccacccat ccatcatc catccatcca chr12:93467246-93467326 36 1.73e-05 TAAAACCCTT CCATCATC CCCCAACTGT chr19:48272938-48273018 20 1.73e-05 atccatccat ccatcatc catccatcaa chr10:105461287-10546136 27 1.73e-05 cactacccat ccatcatc tatccattca chr1:228229148-228229228 49 1.73e-05 atccatcaat ccatcatc catctatcca chr16:12515725-12515805 53 1.73e-05 ccgtccatca ccatcatc atccgtccat chr12:132649130-13264921 61 1.73e-05 agccatccat ccatcatc cattcatcca chr13:114873772-11487385 19 3.64e-05 CACCCTGAAA CCATCACC CCATCTGTCA chr12:49351290-49351370 69 3.64e-05 CTCGCGAGAC CCATCACC ATGG chr19:48321476-48321556 56 3.64e-05 atccatccat ccatcacc catccatcca chr13:114754493-11475457 38 3.64e-05 acccatctgt ccatcacc atcactcacc chr2:241137298-241137378 18 3.64e-05 ccatcactgt ccatcacc gtccatcgct chr19:47818462-47818542 29 6.79e-05 cctggatgta ccatcatt aatttagcca chr6:1704243-1704323 19 6.79e-05 ATCACCCTAT TCATCATC ACCTATCATT chr15:58958051-58958131 39 6.79e-05 catcattcat tcatcatc attcatcatt chr2:3273032-3273112 68 6.79e-05 tcgcactcaa tcatcatc acact chr10:1541927-1542007 52 6.79e-05 cattactcac tcatcatc attcccttgt chr22:21435557-21435637 53 8.41e-05 ctgcagtgag ccatgatc atgccattgc chr6:3196044-3196124 61 8.41e-05 acatctgccc ccatgatc cagtcaccat chr12:117566148-11756622 46 1.19e-04 caatgccatg tcatcacc tgtcaagtta chr13:114753751-11475383 7 1.19e-04 acctac ccatcact cacccatccg chr13:114755020-11475510 37 1.19e-04 atctatccac ccatcact caccccagtc chr10:126030589-12603066 43 1.19e-04 CCATGTCACA CCATCACT TTCACACCAT chr7:158939430-158939510 14 1.35e-04 tatcaatcac ctatcatc tgcctatctg chr6:164138295-164138375 64 1.35e-04 tctctgtcac ctatcatc tgtctgtta chr10:1541109-1541189 45 1.49e-04 catttattac tcatcatt caGTGTTCAT chr3:38128920-38129000 12 1.67e-04 ctgacaccat ccatcagc atgctcacac chr22:23608194-23608274 62 2.00e-04 tgcttgtctt ccatgacc ttgacttttt chr19:3914392-3914472 44 2.30e-04 agacctgccc ccatgatt cagtgacctc chr10:11157448-11157528 71 2.63e-04 CTTTAGCTAT TCATCACT GT chr5:19049027-19049107 16 2.92e-04 AGTCATAAAT CTATCATT ACCATCCCTT chr3:197765840-197765920 14 3.42e-04 cccaaccacc tcatcagc aacccagcca chr1:39249444-39249524 68 3.71e-04 GTGTATCTGT CAATCATT GTCAC chr7:101160794-101160874 20 3.71e-04 cccacttata taatcatc agatctcgcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:131889584-13188966 1.7e-05 48_[+4]_24 chr16:81611638-81611718 1.7e-05 27_[+4]_45 chr21:46576088-46576168 1.7e-05 5_[+4]_67 chr7:66675714-66675794 1.7e-05 58_[+4]_14 chr13:114753547-11475362 1.7e-05 2_[+4]_70 chr19:56670529-56670609 1.7e-05 13_[+4]_59 chr16:85381809-85381889 1.7e-05 31_[+4]_41 chr19:2440718-2440798 1.7e-05 35_[+4]_37 chr2:111568150-111568230 1.7e-05 62_[+4]_10 chr12:93467246-93467326 1.7e-05 35_[+4]_37 chr19:48272938-48273018 1.7e-05 19_[+4]_53 chr10:105461287-10546136 1.7e-05 26_[+4]_46 chr1:228229148-228229228 1.7e-05 48_[+4]_24 chr16:12515725-12515805 1.7e-05 52_[+4]_20 chr12:132649130-13264921 1.7e-05 60_[+4]_12 chr13:114873772-11487385 3.6e-05 18_[+4]_54 chr12:49351290-49351370 3.6e-05 68_[+4]_4 chr19:48321476-48321556 3.6e-05 55_[+4]_17 chr13:114754493-11475457 3.6e-05 37_[+4]_35 chr2:241137298-241137378 3.6e-05 17_[+4]_55 chr19:47818462-47818542 6.8e-05 28_[+4]_44 chr6:1704243-1704323 6.8e-05 18_[+4]_54 chr15:58958051-58958131 6.8e-05 38_[+4]_34 chr2:3273032-3273112 6.8e-05 67_[+4]_5 chr10:1541927-1542007 6.8e-05 51_[+4]_21 chr22:21435557-21435637 8.4e-05 52_[+4]_20 chr6:3196044-3196124 8.4e-05 60_[+4]_12 chr12:117566148-11756622 0.00012 45_[+4]_27 chr13:114753751-11475383 0.00012 6_[+4]_66 chr13:114755020-11475510 0.00012 36_[+4]_36 chr10:126030589-12603066 0.00012 42_[+4]_30 chr7:158939430-158939510 0.00013 13_[+4]_59 chr6:164138295-164138375 0.00013 63_[+4]_9 chr10:1541109-1541189 0.00015 44_[+4]_28 chr3:38128920-38129000 0.00017 11_[+4]_61 chr22:23608194-23608274 0.0002 61_[+4]_11 chr19:3914392-3914472 0.00023 43_[+4]_29 chr10:11157448-11157528 0.00026 70_[+4]_2 chr5:19049027-19049107 0.00029 15_[+4]_57 chr3:197765840-197765920 0.00034 13_[+4]_59 chr1:39249444-39249524 0.00037 67_[+4]_5 chr7:101160794-101160874 0.00037 19_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATCATC width=8 seqs=42 chr12:131889584-13188966 ( 49) CCATCATC 1 chr16:81611638-81611718 ( 28) CCATCATC 1 chr21:46576088-46576168 ( 6) CCATCATC 1 chr7:66675714-66675794 ( 59) CCATCATC 1 chr13:114753547-11475362 ( 3) CCATCATC 1 chr19:56670529-56670609 ( 14) CCATCATC 1 chr16:85381809-85381889 ( 32) CCATCATC 1 chr19:2440718-2440798 ( 36) CCATCATC 1 chr2:111568150-111568230 ( 63) CCATCATC 1 chr12:93467246-93467326 ( 36) CCATCATC 1 chr19:48272938-48273018 ( 20) CCATCATC 1 chr10:105461287-10546136 ( 27) CCATCATC 1 chr1:228229148-228229228 ( 49) CCATCATC 1 chr16:12515725-12515805 ( 53) CCATCATC 1 chr12:132649130-13264921 ( 61) CCATCATC 1 chr13:114873772-11487385 ( 19) CCATCACC 1 chr12:49351290-49351370 ( 69) CCATCACC 1 chr19:48321476-48321556 ( 56) CCATCACC 1 chr13:114754493-11475457 ( 38) CCATCACC 1 chr2:241137298-241137378 ( 18) CCATCACC 1 chr19:47818462-47818542 ( 29) CCATCATT 1 chr6:1704243-1704323 ( 19) TCATCATC 1 chr15:58958051-58958131 ( 39) TCATCATC 1 chr2:3273032-3273112 ( 68) TCATCATC 1 chr10:1541927-1542007 ( 52) TCATCATC 1 chr22:21435557-21435637 ( 53) CCATGATC 1 chr6:3196044-3196124 ( 61) CCATGATC 1 chr12:117566148-11756622 ( 46) TCATCACC 1 chr13:114753751-11475383 ( 7) CCATCACT 1 chr13:114755020-11475510 ( 37) CCATCACT 1 chr10:126030589-12603066 ( 43) CCATCACT 1 chr7:158939430-158939510 ( 14) CTATCATC 1 chr6:164138295-164138375 ( 64) CTATCATC 1 chr10:1541109-1541189 ( 45) TCATCATT 1 chr3:38128920-38129000 ( 12) CCATCAGC 1 chr22:23608194-23608274 ( 62) CCATGACC 1 chr19:3914392-3914472 ( 44) CCATGATT 1 chr10:11157448-11157528 ( 71) TCATCACT 1 chr5:19049027-19049107 ( 16) CTATCATT 1 chr3:197765840-197765920 ( 14) TCATCAGC 1 chr1:39249444-39249524 ( 68) CAATCATT 1 chr7:101160794-101160874 ( 20) TAATCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.74794 E= 2.8e-010 -1204 157 -1204 -17 -237 173 -1204 -176 202 -1204 -1204 -1204 -1204 -1204 -1204 205 -1204 177 -137 -1204 202 -1204 -1204 -1204 -1204 -2 -237 152 -1204 157 -1204 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 2.8e-010 0.000000 0.785714 0.000000 0.214286 0.047619 0.880952 0.000000 0.071429 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.904762 0.095238 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.261905 0.047619 0.690476 0.000000 0.785714 0.000000 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCATC MEME-4 regular expression -------------------------------------------------------------------------------- [CT]CATCA[TC][CT] -------------------------------------------------------------------------------- Time 15.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CATCCATC MEME-5 width = 8 sites = 32 llr = 271 E-value = 4.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :8:::91: pos.-specific C a:28a::a probability G :1:::::: matrix T :282:19: bits 2.1 1.8 * * * 1.6 * * ** 1.4 * **** Relative 1.2 * * **** Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATCCATC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:131889584-13188966 23 1.73e-05 tccattcacc catccatc catccatcat chr19:2156458-2156538 45 1.73e-05 cccactaacc catccatc cacccaccca chr21:46576088-46576168 27 1.73e-05 catcatctgt catccatc catccatcca chr19:48321476-48321556 2 1.73e-05 c catccatc catccaccca chr7:66675714-66675794 48 1.73e-05 tccatccatc catccatc cgtccatcat chr16:85381809-85381889 17 1.73e-05 acccatctat catccatc cacctgtcca chr19:2440718-2440798 70 1.73e-05 atccatcatc catccatc tac chr2:111568150-111568230 45 1.73e-05 tctgttcatc catccatc atccacccat chr19:48272938-48273018 43 1.73e-05 atcaatcatc catccatc atccatccat chr10:105461287-10546136 43 1.73e-05 tctatccatt catccatc catcatccat chr3:38128920-38129000 70 1.73e-05 atgctcacac catccatc agc chr1:228229148-228229228 7 1.73e-05 atccaa catccatc aatctatcca chr12:132649130-13264921 19 1.73e-05 tctacctagc catccatc tatccaccca chr13:114753751-11475383 42 3.64e-05 attcatcACT CACCCATC TGTCAATCCA chr13:114753547-11475362 30 3.64e-05 tcggtccatc cacccatc ACTCACCCCT chr13:114755020-11475510 11 3.64e-05 tccttccatc cacccatc actcatccat chr13:114754493-11475457 52 3.64e-05 caccatcact cacccatc tgtcagtcca chr22:23608194-23608274 24 5.34e-05 ctctagtctc cttccatc tgtaccagtt chr19:56670529-56670609 30 6.91e-05 tccacccatg cattcatc atctacccat chr10:1541109-1541189 60 6.91e-05 attcaGTGTT CATTCATC GCTCACTAAt chr1:44443500-44443580 58 8.68e-05 GTGGTCTGTC CATCCAAC CATGTGCTAG chr13:114873772-11487385 70 1.04e-04 CATCACCCCG CGTCCATC ACc chr16:12515725-12515805 44 1.04e-04 catcaccagc cgtccatc accatcatca chr1:151712156-151712236 24 1.57e-04 aggactgaag cactcatc cttgtcctcc chr3:197765840-197765920 73 1.73e-04 aaaccaacca CTTTCATC chr20:55986051-55986131 32 1.89e-04 tccacatgga catgcatc cacagacaca chr12:93467246-93467326 16 2.06e-04 ctgTCACCAC CATCCGTC TCTAAAACCC chr19:55038381-55038461 40 2.26e-04 GCGAGATCTT CACCCAAC TCAAGAGACC chr1:11238513-11238593 61 2.43e-04 CAGTTAATTA CTTCCAAC TTTATCTTAC chr5:79657061-79657141 24 3.14e-04 tccttccttc cttccttc cctccctcct chr7:72832791-72832871 65 3.14e-04 ctctttcttc cttccttc ttttcttc chr5:122278446-122278526 65 3.62e-04 TCGGGTTTGT CTCTCATC TAAAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:131889584-13188966 1.7e-05 22_[+5]_50 chr19:2156458-2156538 1.7e-05 44_[+5]_28 chr21:46576088-46576168 1.7e-05 26_[+5]_46 chr19:48321476-48321556 1.7e-05 1_[+5]_71 chr7:66675714-66675794 1.7e-05 47_[+5]_25 chr16:85381809-85381889 1.7e-05 16_[+5]_56 chr19:2440718-2440798 1.7e-05 69_[+5]_3 chr2:111568150-111568230 1.7e-05 44_[+5]_28 chr19:48272938-48273018 1.7e-05 42_[+5]_30 chr10:105461287-10546136 1.7e-05 42_[+5]_30 chr3:38128920-38129000 1.7e-05 69_[+5]_3 chr1:228229148-228229228 1.7e-05 6_[+5]_66 chr12:132649130-13264921 1.7e-05 18_[+5]_54 chr13:114753751-11475383 3.6e-05 41_[+5]_31 chr13:114753547-11475362 3.6e-05 29_[+5]_43 chr13:114755020-11475510 3.6e-05 10_[+5]_62 chr13:114754493-11475457 3.6e-05 51_[+5]_21 chr22:23608194-23608274 5.3e-05 23_[+5]_49 chr19:56670529-56670609 6.9e-05 29_[+5]_43 chr10:1541109-1541189 6.9e-05 59_[+5]_13 chr1:44443500-44443580 8.7e-05 57_[+5]_15 chr13:114873772-11487385 0.0001 69_[+5]_3 chr16:12515725-12515805 0.0001 43_[+5]_29 chr1:151712156-151712236 0.00016 23_[+5]_49 chr3:197765840-197765920 0.00017 72_[+5] chr20:55986051-55986131 0.00019 31_[+5]_41 chr12:93467246-93467326 0.00021 15_[+5]_57 chr19:55038381-55038461 0.00023 39_[+5]_33 chr1:11238513-11238593 0.00024 60_[+5]_12 chr5:79657061-79657141 0.00031 23_[+5]_49 chr7:72832791-72832871 0.00031 64_[+5]_8 chr5:122278446-122278526 0.00036 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATCCATC width=8 seqs=32 chr12:131889584-13188966 ( 23) CATCCATC 1 chr19:2156458-2156538 ( 45) CATCCATC 1 chr21:46576088-46576168 ( 27) CATCCATC 1 chr19:48321476-48321556 ( 2) CATCCATC 1 chr7:66675714-66675794 ( 48) CATCCATC 1 chr16:85381809-85381889 ( 17) CATCCATC 1 chr19:2440718-2440798 ( 70) CATCCATC 1 chr2:111568150-111568230 ( 45) CATCCATC 1 chr19:48272938-48273018 ( 43) CATCCATC 1 chr10:105461287-10546136 ( 43) CATCCATC 1 chr3:38128920-38129000 ( 70) CATCCATC 1 chr1:228229148-228229228 ( 7) CATCCATC 1 chr12:132649130-13264921 ( 19) CATCCATC 1 chr13:114753751-11475383 ( 42) CACCCATC 1 chr13:114753547-11475362 ( 30) CACCCATC 1 chr13:114755020-11475510 ( 11) CACCCATC 1 chr13:114754493-11475457 ( 52) CACCCATC 1 chr22:23608194-23608274 ( 24) CTTCCATC 1 chr19:56670529-56670609 ( 30) CATTCATC 1 chr10:1541109-1541189 ( 60) CATTCATC 1 chr1:44443500-44443580 ( 58) CATCCAAC 1 chr13:114873772-11487385 ( 70) CGTCCATC 1 chr16:12515725-12515805 ( 44) CGTCCATC 1 chr1:151712156-151712236 ( 24) CACTCATC 1 chr3:197765840-197765920 ( 73) CTTTCATC 1 chr20:55986051-55986131 ( 32) CATGCATC 1 chr12:93467246-93467326 ( 16) CATCCGTC 1 chr19:55038381-55038461 ( 40) CACCCAAC 1 chr1:11238513-11238593 ( 61) CTTCCAAC 1 chr5:79657061-79657141 ( 24) CTTCCTTC 1 chr7:72832791-72832871 ( 65) CTTCCTTC 1 chr5:122278446-122278526 ( 65) CTCTCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 4.0e-002 -1164 191 -1164 -1164 161 -1164 -198 -36 -1164 -28 -1164 169 -1164 161 -298 -63 -1164 191 -1164 -1164 188 -1164 -298 -195 -139 -1164 -1164 191 -1164 191 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.0e-002 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.062500 0.187500 0.000000 0.218750 0.000000 0.781250 0.000000 0.812500 0.031250 0.156250 0.000000 1.000000 0.000000 0.000000 0.906250 0.000000 0.031250 0.062500 0.093750 0.000000 0.000000 0.906250 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCCATC MEME-5 regular expression -------------------------------------------------------------------------------- CA[TC]CCATC -------------------------------------------------------------------------------- Time 19.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:48103288-48103368 7.96e-02 80 chr10:1541109-1541189 3.22e-04 5_[+5(6.91e-05)]_46_[+5(6.91e-05)]_\ 13 chr21:47235879-47235959 1.86e-01 [+2(2.52e-05)]_72 chr19:8163170-8163250 8.33e-01 80 chr22:35939923-35940003 2.12e-01 80 chr19:415440-415520 3.32e-01 29_[+2(5.17e-05)]_18_[+2(5.17e-05)]_\ 17 chr15:36936837-36936917 9.02e-01 80 chr12:132649130-13264921 1.54e-05 2_[+3(7.21e-05)]_8_[+3(1.73e-05)]_8_\ [+3(1.73e-05)]_11_[+3(1.73e-05)]_7_[+5(6.91e-05)]_4 chr7:568217-568297 3.13e-01 12_[+2(5.17e-05)]_45_[+2(5.17e-05)]_\ 7 chr2:241137298-241137378 1.05e-04 17_[+4(3.64e-05)]_12_[+4(3.64e-05)]_\ 35 chr12:113875299-11387537 2.22e-01 35_[+2(5.17e-05)]_15_[+2(5.17e-05)]_\ 14 chr16:12515725-12515805 1.63e-05 6_[+4(3.64e-05)]_12_[+4(3.64e-05)]_\ 12_[+4(3.64e-05)]_1_[+4(6.79e-05)]_7_[+3(1.73e-05)]_2 chr19:45249643-45249723 4.96e-02 42_[+3(7.21e-05)]_30 chr15:27365146-27365226 8.24e-01 80 chr7:154609444-154609524 3.01e-02 31_[+2(1.25e-05)]_20_[+2(2.52e-05)]_\ 13 chr6:164138295-164138375 8.22e-03 80 chr7:16438965-16439045 4.78e-02 15_[+2(5.17e-05)]_57 chr21:47234591-47234671 1.86e-01 15_[+2(2.52e-05)]_6_[+2(2.52e-05)]_\ 28_[+2(2.52e-05)]_7 chr20:51810990-51811070 1.02e-05 49_[+3(1.73e-05)]_23 chr19:3556548-3556628 9.87e-01 80 chr1:228229148-228229228 1.65e-05 6_[+3(1.73e-05)]_23_[+3(1.73e-05)]_\ 7_[+3(1.73e-05)]_12_[+3(1.73e-05)] chr10:1541927-1542007 9.51e-04 51_[+4(6.79e-05)]_21 chr19:44302322-44302402 2.08e-01 80 chr2:3273032-3273112 4.93e-02 67_[+4(6.79e-05)]_5 chr22:37468801-37468881 3.45e-01 4_[+2(5.17e-05)]_22_[+2(5.17e-05)]_\ 11_[+2(5.17e-05)]_19 chr10:11157448-11157528 6.95e-02 80 chr20:61888521-61888601 4.57e-01 80 chr3:38128920-38129000 9.66e-05 8_[+3(1.73e-05)]_13_[+3(1.73e-05)]_\ 11_[+3(1.73e-05)]_13_[+3(1.73e-05)]_3 chr10:105461287-10546136 1.20e-05 4_[+3(1.73e-05)]_11_[+3(1.73e-05)]_\ 11_[+3(1.73e-05)]_3_[+3(1.73e-05)]_7_[+3(1.73e-05)]_4 chr17:80218434-80218514 1.00e-01 5_[+2(2.52e-05)]_31_[+2(7.88e-05)]_\ 16_[+2(7.88e-05)]_4 chr19:48272938-48273018 1.55e-05 [+4(1.73e-05)]_4_[+3(1.73e-05)]_3_\ [+3(1.73e-05)]_7_[+3(1.73e-05)]_3_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_7 chr15:58958051-58958131 1.05e-05 2_[+4(6.79e-05)]_14_[+5(6.91e-05)]_\ 6_[+4(6.79e-05)]_34 chr5:68345097-68345177 7.24e-02 80 chr5:103351608-103351688 6.13e-01 80 chr12:24861801-24861881 5.36e-02 80 chr2:232759799-232759879 6.02e-02 37_[+1(3.10e-05)]_12_[+1(1.62e-05)]_\ 15 chr12:117563759-11756383 8.01e-03 80 chr5:19049027-19049107 2.06e-02 80 chr12:93467246-93467326 1.07e-04 15_[+3(7.21e-05)]_12_[+4(1.73e-05)]_\ 16_[+3(7.21e-05)]_13 chr22:37468161-37468241 3.45e-01 5_[+2(5.17e-05)]_26_[+2(5.17e-05)]_\ 7_[+2(5.17e-05)]_7_[+2(5.17e-05)]_3 chr2:242605271-242605351 1.70e-01 80 chr2:45660661-45660741 2.74e-01 80 chr7:101160794-101160874 9.34e-03 30_[+1(1.62e-05)]_42 chr19:765370-765450 3.95e-02 80 chr17:80217984-80218064 1.94e-01 28_[+2(2.52e-05)]_44 chr9:72046842-72046922 4.94e-01 80 chr4:80927145-80927225 2.23e-01 80 chr7:157726166-157726246 2.46e-01 22_[+2(5.17e-05)]_50 chr7:158939430-158939510 7.99e-03 43_[+3(8.78e-05)]_29 chr2:111568150-111568230 1.06e-05 [+3(1.73e-05)]_2_[+4(6.79e-05)]_10_\ [+4(6.79e-05)]_4_[+3(1.73e-05)]_11_[+3(1.73e-05)]_3_[+3(1.73e-05)]_2 chr13:114754493-11475457 3.37e-04 15_[+5(3.64e-05)]_3_[+5(3.64e-05)]_\ 3_[+4(3.64e-05)]_6_[+5(3.64e-05)]_21 chr10:126030589-12603066 1.10e-01 80 chr17:74273741-74273821 9.47e-01 80 chr11:65508826-65508906 6.56e-03 80 chr1:149606016-149606096 8.60e-01 80 chr3:195872136-195872216 1.74e-01 30_[+2(5.17e-05)]_25_[+2(5.17e-05)]_\ 9 chr7:72068229-72068309 1.64e-01 54_[+2(1.25e-05)]_18 chr1:117724426-117724506 2.19e-02 80 chr1:17007435-17007515 5.78e-01 80 chr11:100580119-10058019 1.26e-01 80 chr11:1285822-1285902 6.14e-02 33_[+1(3.10e-05)]_39 chr13:114755020-11475510 5.58e-05 2_[+5(5.34e-05)]_[+5(3.64e-05)]_3_\ [+3(1.73e-05)]_4_[+5(3.64e-05)]_39 chr4:603359-603439 3.31e-01 32_[+2(5.17e-05)]_25_[+2(5.17e-05)]_\ 7 chr19:2440718-2440798 1.44e-05 [+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(8.78e-05)]_4_[+3(1.73e-05)]_3_[+3(8.78e-05)]_18_[+3(1.73e-05)]_7 chr5:64086164-64086244 1.01e-01 80 chr20:34622995-34623075 9.99e-01 80 chr19:46914930-46915010 2.57e-01 80 chr15:38800965-38801045 2.36e-03 51_[+2(2.52e-05)]_21 chr5:80112536-80112616 9.24e-01 80 chr12:131613682-13161376 2.75e-01 29_[+2(7.88e-05)]_22_[+2(7.88e-05)]_\ 13 chr8:15274606-15274686 5.99e-02 44_[+1(1.62e-05)]_28 chr6:170166015-170166095 8.54e-01 80 chr6:149765974-149766054 7.38e-01 80 chr12:111734959-11173503 6.80e-02 80 chrX:63615368-63615448 1.70e-02 24_[+1(4.60e-05)]_48 chr20:61888950-61889030 4.55e-01 80 chr6:1704243-1704323 3.16e-04 3_[+5(6.91e-05)]_7_[+4(6.79e-05)]_\ 54 chr19:54664439-54664519 1.38e-01 80 chr3:71099930-71100010 1.38e-01 80 chr7:151406890-151406970 9.30e-02 26_[+2(2.52e-05)]_9_[+2(7.88e-05)]_\ 29 chr17:46059810-46059890 1.71e-01 80 chr16:85381809-85381889 1.65e-05 5_[+5(3.64e-05)]_3_[+3(1.73e-05)]_\ 11_[+3(1.73e-05)]_[+3(1.73e-05)]_15_[+3(7.21e-05)]_6 chr19:56670529-56670609 5.85e-06 2_[+5(6.91e-05)]_3_[+4(1.73e-05)]_\ 11_[+4(6.79e-05)]_4_[+3(1.73e-05)]_3_[+3(7.21e-05)]_17 chr13:114753547-11475362 1.29e-05 2_[+4(1.73e-05)]_19_[+5(3.64e-05)]_\ 15_[+3(1.73e-05)]_3_[+5(3.64e-05)]_9 chr12:117564363-11756444 3.99e-02 80 chr20:52675557-52675637 4.11e-02 42_[+1(1.62e-05)]_30 chr17:19091380-19091460 7.00e-01 80 chr20:55986051-55986131 1.73e-01 80 chr6:147312434-147312514 3.70e-01 80 chr11:102524798-10252487 1.45e-01 80 chr19:10117821-10117901 1.46e-01 80 chr16:27879184-27879264 5.22e-02 50_[+1(1.62e-05)]_22 chr14:29299349-29299429 9.62e-02 44_[+1(4.60e-05)]_28 chr19:55038381-55038461 4.75e-03 25_[+1(4.60e-05)]_47 chr22:19165314-19165394 3.77e-01 80 chr1:92371919-92371999 3.84e-02 2_[+1(1.62e-05)]_70 chr9:76484390-76484470 9.29e-01 80 chr11:125840563-12584064 2.00e-02 62_[+2(7.88e-05)]_10 chr7:66675714-66675794 1.06e-05 39_[+3(1.73e-05)]_[+3(1.73e-05)]_3_\ [+4(1.73e-05)]_14 chr11:134314443-13431452 5.51e-02 57_[+1(3.10e-05)]_15 chr3:72387399-72387479 1.58e-01 27_[+2(1.25e-05)]_45 chr16:85380057-85380137 3.41e-01 18_[+2(5.17e-05)]_30_[+2(5.17e-05)]_\ 16 chr19:48321476-48321556 3.04e-05 1_[+3(1.73e-05)]_8_[+3(1.73e-05)]_3_\ [+3(1.73e-05)]_[+3(1.73e-05)]_[+3(1.73e-05)]_[+3(1.73e-05)]_3_\ [+3(1.73e-05)]_[+3(1.73e-05)]_1 chr20:51765805-51765885 1.82e-01 80 chr1:232941068-232941148 1.63e-01 17_[+1(1.62e-05)]_32_[+1(3.10e-05)]_\ 15 chr9:6413115-6413195 8.37e-03 31_[+1(1.62e-05)]_41 chr13:114753751-11475383 3.91e-04 14_[+5(3.64e-05)]_8_[+5(6.91e-05)]_\ 3_[+5(3.64e-05)]_8_[+5(3.64e-05)]_15 chr14:30766259-30766339 8.34e-02 26_[+1(3.10e-05)]_46 chr15:91382426-91382506 2.54e-01 80 chr17:18585670-18585750 2.77e-03 58_[+1(1.62e-05)]_14 chr1:11238513-11238593 4.27e-02 80 chr20:58405228-58405308 4.85e-01 80 chr19:3914392-3914472 2.12e-03 80 chr22:23605023-23605103 1.00e+00 80 chr12:117566148-11756622 4.86e-02 80 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chr3:191143196-191143276 4.59e-03 50_[+1(3.10e-05)]_22 chr5:139493591-139493671 2.46e-02 35_[+1(1.62e-05)]_37 chrX:53711156-53711236 9.87e-01 80 chr1:207226279-207226359 2.31e-02 48_[+1(1.62e-05)]_24 chr19:2362060-2362140 4.39e-02 55_[+2(2.52e-05)]_17 chr4:6615517-6615597 9.88e-01 80 chr6:108279314-108279394 4.20e-01 80 chr1:47890102-47890182 4.24e-01 80 chr15:43462201-43462281 8.68e-01 80 chr17:53046029-53046109 2.80e-02 26_[+1(1.62e-05)]_11_[+1(1.62e-05)]_\ 27 chr7:72832791-72832871 5.11e-02 80 chr1:245508941-245509021 5.11e-03 32_[+1(3.10e-05)]_12_[+1(3.10e-05)]_\ 20 chr8:103766762-103766842 9.96e-01 80 chr22:19709377-19709457 5.25e-01 80 chr10:112064676-11206475 1.60e-01 41_[+1(1.62e-05)]_31 chr13:79980363-79980443 7.78e-02 14_[+1(1.62e-05)]_12_[+1(6.23e-05)]_\ 38 chr5:122278446-122278526 1.02e-01 80 chr4:8545460-8545540 1.52e-02 4_[+1(3.10e-05)]_12_[+1(3.10e-05)]_\ 12_[+1(3.10e-05)]_12_[+1(3.10e-05)]_8 chr3:49131507-49131587 5.10e-02 13_[+1(1.62e-05)]_59 chr7:157085152-157085232 9.62e-01 80 chr16:85853126-85853206 1.33e-01 80 chr19:3154621-3154701 3.43e-01 37_[+2(5.17e-05)]_35 chr1:151712156-151712236 1.91e-03 80 chr22:50578731-50578811 4.27e-01 80 chr4:68267711-68267791 5.04e-02 8_[+2(7.88e-05)]_64 chr11:13484822-13484902 8.02e-02 38_[+1(1.62e-05)]_34 chr2:219773761-219773841 2.41e-01 38_[+1(4.60e-05)]_34 chr10:49862926-49863006 1.13e-01 80 chr1:33764399-33764479 6.72e-01 80 chr2:220363541-220363621 2.95e-02 39_[+1(1.62e-05)]_33 chr9:102007091-102007171 9.77e-01 80 chr16:88280457-88280537 1.25e-01 80 chr15:78730438-78730518 1.24e-01 44_[+1(6.23e-05)]_28 chr18:34481273-34481353 9.39e-01 80 chr19:47818462-47818542 5.76e-02 28_[+4(6.79e-05)]_44 chr1:45479098-45479178 2.56e-01 80 chr10:86093672-86093752 4.69e-01 80 chr2:225450207-225450287 1.11e-01 34_[+1(1.62e-05)]_38 chr6:14108497-14108577 9.73e-01 80 chr3:41643768-41643848 1.00e+00 80 chr9:88555890-88555970 1.42e-02 28_[+1(1.62e-05)]_10_[+1(1.62e-05)]_\ 26 chr1:16839584-16839664 6.74e-01 80 chr17:5390424-5390504 6.36e-01 80 chr4:103749110-103749190 4.18e-03 9_[+1(1.62e-05)]_63 chr1:114931571-114931651 4.11e-01 80 chr22:23282943-23283023 1.00e+00 80 chr16:54908077-54908157 5.38e-02 39_[+1(3.10e-05)]_33 chr6:8166539-8166619 8.94e-02 80 chr12:57940972-57941052 4.46e-02 2_[+1(1.62e-05)]_70 chr3:197765840-197765920 7.41e-03 80 chr6:147981723-147981803 7.89e-03 44_[+1(1.62e-05)]_28 chr5:79657061-79657141 3.61e-02 80 chr22:21435557-21435637 1.27e-01 52_[+4(8.41e-05)]_20 chr16:81611638-81611718 2.80e-03 27_[+4(1.73e-05)]_1_[+4(3.64e-05)]_\ 10_[+4(1.73e-05)]_18 chr13:114873772-11487385 1.48e-04 18_[+4(3.64e-05)]_15_[+3(7.21e-05)]_\ 9_[+4(3.64e-05)]_6_[+4(3.64e-05)] chr9:138033381-138033461 3.41e-01 4_[+2(5.17e-05)]_35_[+2(5.17e-05)]_\ 25 chr10:3801707-3801787 9.70e-01 80 chr5:112267325-112267405 1.71e-02 80 chr19:2156458-2156538 1.29e-03 12_[+5(3.64e-05)]_24_[+3(1.73e-05)]_\ 12_[+3(1.73e-05)]_8 chrX:41193082-41193162 1.76e-01 34_[+1(1.62e-05)]_38 chr22:23333354-23333434 1.00e+00 80 chr4:169457767-169457847 4.35e-02 40_[+1(1.62e-05)]_32 chr1:149514148-149514228 9.35e-01 80 chr3:137893763-137893843 6.90e-02 26_[+1(1.62e-05)]_46 chr12:131889584-13188966 1.66e-05 6_[+3(1.73e-05)]_8_[+3(1.73e-05)]_\ [+3(1.73e-05)]_3_[+3(1.73e-05)]_3_[+3(1.73e-05)]_20 chr22:19981655-19981735 3.12e-01 80 chr21:44580130-44580210 9.84e-01 80 chr12:104882282-10488236 9.99e-01 80 chr3:128215009-128215089 9.99e-01 80 chr22:20037590-20037670 8.50e-01 80 chr19:13180246-13180326 5.32e-01 80 chr22:23608194-23608274 2.87e-04 23_[+5(5.34e-05)]_49 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************