******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/AFF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:190971025-190971105 1.0000 80 chr19:49362012-49362092 1.0000 80 chr19:49310027-49310107 1.0000 80 chr19:49416528-49416608 1.0000 80 chr19:55831281-55831361 1.0000 80 chr19:49486857-49486937 1.0000 80 chr19:54396428-54396508 1.0000 80 chr19:49385137-49385217 1.0000 80 chr19:54480867-54480947 1.0000 80 chr19:55709057-55709137 1.0000 80 chr19:54682362-54682442 1.0000 80 chr11:74459583-74459663 1.0000 80 chr19:46027169-46027249 1.0000 80 chr1:20960623-20960703 1.0000 80 chr19:49228254-49228334 1.0000 80 chr19:54411486-54411566 1.0000 80 chr19:51142563-51142643 1.0000 80 chr19:49013931-49014011 1.0000 80 chr19:49490330-49490410 1.0000 80 chr19:55690506-55690586 1.0000 80 chr10:89102584-89102664 1.0000 80 chr19:55816995-55817075 1.0000 80 chr19:48922680-48922760 1.0000 80 chrX:49068881-49068961 1.0000 80 chr1:10706560-10706640 1.0000 80 chr10:81586496-81586576 1.0000 80 chrX:11128216-11128296 1.0000 80 chr7:20257086-20257166 1.0000 80 chr19:50163172-50163252 1.0000 80 chr19:49248611-49248691 1.0000 80 chr17:7118414-7118494 1.0000 80 chr3:75690318-75690398 1.0000 80 chr6:31866312-31866392 1.0000 80 chr16:1625729-1625809 1.0000 80 chr7:63767727-63767807 1.0000 80 chr14:90620620-90620700 1.0000 80 chr9:72435526-72435606 1.0000 80 chr19:20163084-20163164 1.0000 80 chr5:142784262-142784342 1.0000 80 chr2:128643966-128644046 1.0000 80 chr6:44101510-44101590 1.0000 80 chr19:50651536-50651616 1.0000 80 chr2:27319243-27319323 1.0000 80 chr12:58287797-58287877 1.0000 80 chr4:56365872-56365952 1.0000 80 chr16:68482607-68482687 1.0000 80 chr6:52929641-52929721 1.0000 80 chr19:55677437-55677517 1.0000 80 chr19:49017202-49017282 1.0000 80 chr10:63661111-63661191 1.0000 80 chr11:64376990-64377070 1.0000 80 chr11:65635649-65635729 1.0000 80 chr17:40559667-40559747 1.0000 80 chr11:64387359-64387439 1.0000 80 chr6:10147337-10147417 1.0000 80 chr19:55815797-55815877 1.0000 80 chr13:30881193-30881273 1.0000 80 chrX:106045774-106045854 1.0000 80 chr16:86143898-86143978 1.0000 80 chr19:49148188-49148268 1.0000 80 chr14:36295377-36295457 1.0000 80 chr17:7358828-7358908 1.0000 80 chr2:23598481-23598561 1.0000 80 chr19:44488221-44488301 1.0000 80 chr19:507896-507976 1.0000 80 chr8:124054097-124054177 1.0000 80 chrX:697958-698038 1.0000 80 chr11:64038435-64038515 1.0000 80 chr22:41840456-41840536 1.0000 80 chr20:45368985-45369065 1.0000 80 chr11:34607721-34607801 1.0000 80 chr12:56132170-56132250 1.0000 80 chr3:63953418-63953498 1.0000 80 chr4:10172881-10172961 1.0000 80 chr1:201645477-201645557 1.0000 80 chr19:35696741-35696821 1.0000 80 chr19:54382702-54382782 1.0000 80 chr19:55708317-55708397 1.0000 80 chr19:36249320-36249400 1.0000 80 chr19:49404475-49404555 1.0000 80 chr1:205414386-205414466 1.0000 80 chr7:63386654-63386734 1.0000 80 chr14:23676161-23676241 1.0000 80 chr4:74939244-74939324 1.0000 80 chr1:147142662-147142742 1.0000 80 chr2:136288400-136288480 1.0000 80 chr2:86332689-86332769 1.0000 80 chr11:46134683-46134763 1.0000 80 chr19:41084535-41084615 1.0000 80 chr19:49250486-49250566 1.0000 80 chr7:63361078-63361158 1.0000 80 chr1:154979431-154979511 1.0000 80 chr3:97483353-97483433 1.0000 80 chr11:65660907-65660987 1.0000 80 chr3:15141029-15141109 1.0000 80 chr2:120769285-120769365 1.0000 80 chr5:178487308-178487388 1.0000 80 chr5:138875540-138875620 1.0000 80 chr8:134403311-134403391 1.0000 80 chr7:62528828-62528908 1.0000 80 chr20:52380531-52380611 1.0000 80 chr19:48833432-48833512 1.0000 80 chr6:106494859-106494939 1.0000 80 chr19:49422143-49422223 1.0000 80 chr3:156544901-156544981 1.0000 80 chr5:150180934-150181014 1.0000 80 chr8:82755007-82755087 1.0000 80 chr4:10241815-10241895 1.0000 80 chr3:69788441-69788521 1.0000 80 chr7:111201405-111201485 1.0000 80 chr19:48903790-48903870 1.0000 80 chr11:66138863-66138943 1.0000 80 chr16:31232820-31232900 1.0000 80 chr3:101443649-101443729 1.0000 80 chr6:158939654-158939734 1.0000 80 chr6:157801089-157801169 1.0000 80 chr19:49479575-49479655 1.0000 80 chr19:49224348-49224428 1.0000 80 chr19:56989398-56989478 1.0000 80 chr17:7094941-7095021 1.0000 80 chr4:185265098-185265178 1.0000 80 chr6:158154523-158154603 1.0000 80 chr19:7616335-7616415 1.0000 80 chr22:50050653-50050733 1.0000 80 chr10:3598574-3598654 1.0000 80 chrX:64196372-64196452 1.0000 80 chr1:202636493-202636573 1.0000 80 chr17:55162004-55162084 1.0000 80 chr7:57472358-57472438 1.0000 80 chr2:39005278-39005358 1.0000 80 chr22:30163136-30163216 1.0000 80 chr3:61235767-61235847 1.0000 80 chr14:106938390-10693847 1.0000 80 chr19:49469195-49469275 1.0000 80 chr14:81408126-81408206 1.0000 80 chr19:49618307-49618387 1.0000 80 chr1:114912289-114912369 1.0000 80 chr19:48907016-48907096 1.0000 80 chr2:217277114-217277194 1.0000 80 chr12:84412651-84412731 1.0000 80 chr18:56806956-56807036 1.0000 80 chr21:43919658-43919738 1.0000 80 chr19:50030962-50031042 1.0000 80 chr12:1705014-1705094 1.0000 80 chr19:55800672-55800752 1.0000 80 chr19:54503110-54503190 1.0000 80 chr19:50836848-50836928 1.0000 80 chrX:80457385-80457465 1.0000 80 chr17:38582969-38583049 1.0000 80 chr19:48848317-48848397 1.0000 80 chr6:37190422-37190502 1.0000 80 chr10:76817578-76817658 1.0000 80 chr21:15755517-15755597 1.0000 80 chr17:34259065-34259145 1.0000 80 chr13:41837951-41838031 1.0000 80 chr19:38270214-38270294 1.0000 80 chr2:220150946-220151026 1.0000 80 chr2:70974554-70974634 1.0000 80 chr14:82000452-82000532 1.0000 80 chr6:43215024-43215104 1.0000 80 chr14:24701757-24701837 1.0000 80 chr20:2489688-2489768 1.0000 80 chrX:149736806-149736886 1.0000 80 chr19:50169437-50169517 1.0000 80 chr14:24711341-24711421 1.0000 80 chrX:106362030-106362110 1.0000 80 chr11:60681329-60681409 1.0000 80 chr2:12004152-12004232 1.0000 80 chr5:57878760-57878840 1.0000 80 chr10:104262591-10426267 1.0000 80 chr2:217633654-217633734 1.0000 80 chr10:38383178-38383258 1.0000 80 chr19:19887273-19887353 1.0000 80 chr13:31736477-31736557 1.0000 80 chr13:52157981-52158061 1.0000 80 chr7:68999524-68999604 1.0000 80 chr1:205744601-205744681 1.0000 80 chr4:6712256-6712336 1.0000 80 chr1:113500021-113500101 1.0000 80 chr9:40792129-40792209 1.0000 80 chr15:64443668-64443748 1.0000 80 chr2:191631542-191631622 1.0000 80 chr19:45988715-45988795 1.0000 80 chr16:31106264-31106344 1.0000 80 chrX:70315582-70315662 1.0000 80 chr19:37861884-37861964 1.0000 80 chr19:14593237-14593317 1.0000 80 chr14:59655255-59655335 1.0000 80 chr12:104323506-10432358 1.0000 80 chr10:92631650-92631730 1.0000 80 chr21:10163718-10163798 1.0000 80 chr20:4045270-4045350 1.0000 80 chr15:58649978-58650058 1.0000 80 chr16:30939350-30939430 1.0000 80 chr12:861517-861597 1.0000 80 chr7:72745740-72745820 1.0000 80 chr5:74807675-74807755 1.0000 80 chr15:40986914-40986994 1.0000 80 chr12:133532884-13353296 1.0000 80 chr10:63661315-63661395 1.0000 80 chr19:42772874-42772954 1.0000 80 chr11:64715039-64715119 1.0000 80 chr2:239142992-239143072 1.0000 80 chr7:150689946-150690026 1.0000 80 chr11:134123317-13412339 1.0000 80 chr17:16439099-16439179 1.0000 80 chr19:49968755-49968835 1.0000 80 chr2:220577976-220578056 1.0000 80 chr6:37016463-37016543 1.0000 80 chr5:138775182-138775262 1.0000 80 chr19:55629916-55629996 1.0000 80 chr14:106857369-10685744 1.0000 80 chr5:124060907-124060987 1.0000 80 chr7:141264317-141264397 1.0000 80 chr19:55607058-55607138 1.0000 80 chr19:44145638-44145718 1.0000 80 chr9:101172672-101172752 1.0000 80 chr6:116989943-116990023 1.0000 80 chr6:164034893-164034973 1.0000 80 chr3:195853968-195854048 1.0000 80 chr14:77787563-77787643 1.0000 80 chr20:48732486-48732566 1.0000 80 chr19:44331383-44331463 1.0000 80 chr18:832203-832283 1.0000 80 chr19:44860862-44860942 1.0000 80 chr18:9137660-9137740 1.0000 80 chr6:6278810-6278890 1.0000 80 chr19:36363224-36363304 1.0000 80 chr8:101828535-101828615 1.0000 80 chr19:48965795-48965875 1.0000 80 chr4:109571570-109571650 1.0000 80 chr19:12032839-12032919 1.0000 80 chr8:22787581-22787661 1.0000 80 chr9:15422739-15422819 1.0000 80 chr4:18023789-18023869 1.0000 80 chr19:28284797-28284877 1.0000 80 chr16:70488316-70488396 1.0000 80 chr20:20693542-20693622 1.0000 80 chr15:41099664-41099744 1.0000 80 chr3:75834789-75834869 1.0000 80 chr5:178157748-178157828 1.0000 80 chr19:50339856-50339936 1.0000 80 chr3:184550002-184550082 1.0000 80 chr2:53994736-53994816 1.0000 80 chr19:48866437-48866517 1.0000 80 chr20:42747450-42747530 1.0000 80 chr10:43048328-43048408 1.0000 80 chr10:97853312-97853392 1.0000 80 chr11:125773107-12577318 1.0000 80 chr7:106211528-106211608 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_AFF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/AFF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.224 C 0.271 G 0.276 T 0.228 Background letter frequencies (from file dataset with add-one prior applied): A 0.224 C 0.271 G 0.276 T 0.228 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGGARWT MEME-1 width = 8 sites = 113 llr = 932 E-value = 3.3e-100 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a341 pos.-specific C :::::121 probability G :aaa:6:: matrix T a:::::58 bits 2.2 * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** * Entropy 1.1 ***** * (11.9 bits) 0.9 ***** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGGAGTT consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:48732486-48732566 60 1.54e-05 CAGTGCCTGA TGGGAGTT GTAGTACGTC chr5:74807675-74807755 33 1.54e-05 CGCAGCCTCC TGGGAGTT GTAGTCGCGA chr16:31106264-31106344 38 1.54e-05 CCAGGCATGA TGGGAGTT GTAGTCGGCG chr14:24701757-24701837 63 1.54e-05 CGTTTCCCCC TGGGAGTT GTAGTCTAAC chr6:43215024-43215104 60 1.54e-05 CTCGGCCTGC TGGGAGTT GTAGTCTCAG chr13:41837951-41838031 61 1.54e-05 CAAAGAATCC TGGGAGTT GTAGTTTACC chr19:48848317-48848397 68 1.54e-05 AGAGGCCTCC TGGGAGTT TTGTT chr14:81408126-81408206 10 1.54e-05 TTGGCCGTC TGGGAGTT GTAGTCCATC chr3:101443649-101443729 62 1.54e-05 GGCTACCCTC TGGGAGTT GTAGTTCACC chr19:49422143-49422223 70 1.54e-05 AAAGGACTGC TGGGAGTT GAA chr1:154979431-154979511 63 1.54e-05 TGGTGCACAC TGGGAGTT GTAGTCCTTG chr7:63361078-63361158 22 1.54e-05 CTGTGCATGC TGGGAGTT GTAGTCTCTT chr19:507896-507976 57 1.54e-05 CGGGGCTTGC TGGGAGTT GTAGTGCGCG chr17:7358828-7358908 59 1.54e-05 TTGAGCATCA TGGGAGTT GTAGTACTCC chr19:49148188-49148268 65 1.54e-05 CAGAGCCCCG TGGGAGTT GTAGTTCT chr11:64387359-64387439 19 1.54e-05 CAGGGGCAGG TGGGAGTT GTGGTTCTGG chr6:44101510-44101590 63 1.54e-05 CATGGCACTC TGGGAGTT GTAGTGCTCA chr17:7118414-7118494 69 1.54e-05 CGGGGCCTTA TGGGAGTT GGAG chr19:49248611-49248691 68 1.54e-05 CGTTGCCTTC TGGGAGTT GTAGT chr19:50163172-50163252 54 1.54e-05 CTAGGGCTGC TGGGAGTT GTAGTTTTac chr19:55690506-55690586 70 1.54e-05 CGAGTCATGC TGGGAGTT GTA chr19:49013931-49014011 72 1.54e-05 CAAGGCATTG TGGGAGTT G chr19:51142563-51142643 65 1.54e-05 CAGGATCTGC TGGGAGTT GAAGTCCT chr19:49228254-49228334 66 1.54e-05 CAAAGTCTTC TGGGAGTT GTAGTCC chr19:49486857-49486937 64 1.54e-05 AAAGGCCTTC TGGGAGTT GTAGTTCTC chr19:55831281-55831361 67 1.54e-05 CGGGGCATGC TGGGAGTT GTAGTT chr19:49416528-49416608 70 1.54e-05 CAGGGTCTGC TGGGAGTT GTA chr6:6278810-6278890 25 3.05e-05 GAGGGAACTG TGGGAGAT AAGATGCCTG chr6:116989943-116990023 66 3.05e-05 CAGTGCATTC TGGGAGAT GTAGTCt chr9:101172672-101172752 73 3.05e-05 gaagcggtca tgggagAT chr16:30939350-30939430 55 3.05e-05 CAAGGACTGT TGGGAGAT GTAGTTCAGG chr19:37861884-37861964 24 3.05e-05 CGGGGTTCTC TGGGAGAT GTAGTTCAAC chr19:48907016-48907096 14 3.05e-05 CATTGCATGC TGGGAGAT GTAGTCTCCT chr19:49469195-49469275 70 3.05e-05 CGTGGGCTTC TGGGAGAT TGA chr19:7616335-7616415 16 3.05e-05 CAGAGCGTGC TGGGAGAT GTAGTCCGGC chr2:23598481-23598561 28 3.05e-05 gccaggaTGC TGGGAGAT GTAGTctcac chr2:27319243-27319323 67 3.05e-05 CAGTGCATTC TGGGAGAT GCAGTC chr3:75690318-75690398 16 3.05e-05 CTGGTCTTGC TGGGAGAT GCAGTCTCAT chr19:54682362-54682442 70 3.05e-05 TGGGGCCTGC TGGGAGAT GTA chr19:49385137-49385217 73 3.05e-05 CAAGTGATGA TGGGAGAT chr15:41099664-41099744 67 4.30e-05 CCTAGCCCTC TGGGAATT GTGTTC chr21:10163718-10163798 43 4.30e-05 CAAAGCCTCA TGGGAATT GTAGTGTCAC chr19:55800672-55800752 38 4.30e-05 CAGGGACCCA TGGGAATT GGAGTCTCTT chr11:66138863-66138943 68 4.30e-05 AGTCGGCTGA TGGGAATT GTAGT chr22:41840456-41840536 16 4.30e-05 CTCTGCACTC TGGGAATT GTAGTCCTCA chr6:31866312-31866392 68 4.30e-05 CAGAGCTTTC TGGGAATT GTAGT chr19:54396428-54396508 69 4.30e-05 CAGGGTCTGA TGGGAATT ATAG chr11:125773107-12577318 60 5.53e-05 TCCAAGTTTG TGGGAAAT GTAGTTCTGA chr19:50339856-50339936 42 5.53e-05 CTGGGATTGC TGGGAAAT GTGGTCTTAG chr8:101828535-101828615 60 5.53e-05 caagggagcc tgggaaat gtggtctttg chr19:55629916-55629996 49 5.53e-05 CAGGGCATGC TGGGAAAT GAAATTTGCG chr2:220577976-220578056 58 5.53e-05 gaggggagtc tgggaaat gtagtctttt chr19:45988715-45988795 69 5.53e-05 CAGAGCCTCT TGGGAAAT GTAG chr10:38383178-38383258 38 5.53e-05 CGAGGGCTTG TGGGAAAT GAAGCGTGCA chr19:38270214-38270294 32 5.53e-05 CGTTGCCCTC TGGGAAAT GTAGTTTAAG chr21:15755517-15755597 7 5.53e-05 GCCCCC TGGGAAAT GTAGTCCGCT chr2:217277114-217277194 67 5.53e-05 CGTTGCCTGC TGGGAAAT GTAGTT chr1:202636493-202636573 41 5.53e-05 caggggagct tgggaaat gtagtttgct chr4:185265098-185265178 64 5.53e-05 ctggggattc tgggaaat gtagtttgc chr17:7094941-7095021 64 5.53e-05 CAGGGGCTGC TGGGAAAT GTAGTCCTG chr19:48833432-48833512 70 5.53e-05 CATGGGATAT TGGGAAAT GTA chr9:72435526-72435606 73 5.53e-05 CACTGCATTC TGGGAAAT chr19:54411486-54411566 70 5.53e-05 CCAGGGCTGA TGGGAAAT GTA chr19:54480867-54480947 65 5.53e-05 CGGGGTCTCA TGGGAAAT GTAGTCCT chr19:49968755-49968835 44 7.36e-05 CAGAGGCTCA TGGGAGCT GGAGTTTAGG chr2:191631542-191631622 52 7.36e-05 caagggagcc tgggagct gtagtcgtct chr7:57472358-57472438 27 7.36e-05 CTCTGCATGC TGGGAGCT GTAGTCTCTT chrX:64196372-64196452 16 7.36e-05 TGGAGAGGCC TGGGAGCT GTAGTCCGGA chr3:69788441-69788521 27 7.36e-05 CCTGGCCTTC TGGGAGCT GTAGTTTTCG chr19:20163084-20163164 34 7.36e-05 CCTGATATGC TGGGAGCT GTAGTCTCTT chr19:55607058-55607138 66 8.85e-05 AGGACGACTC TGGGAACT ATAGTCT chr7:141264317-141264397 45 8.85e-05 atggggatta tgggaact gtagttcagg chr7:150689946-150690026 72 8.85e-05 ACCTGCATTC TGGGAACT G chr19:14593237-14593317 28 8.85e-05 CAGTGCCTGA TGGGAACT CAGCATCCAG chr1:205414386-205414466 7 8.85e-05 GGTTTC TGGGAACT GTAGTCTACA chr19:44488221-44488301 50 8.85e-05 TGTGGAGTCG TGGGAACT TTGGCTCAGG chr10:76817578-76817658 65 1.04e-04 AAGTCTGGGA TGGGACTT TGCTTTCG chr8:134403311-134403391 48 1.04e-04 gtgtggttgg tgggactt ctgggatagc chr11:46134683-46134763 64 1.04e-04 CAATGCATAC TGGGACTT GTAGTAAGT chr17:40559667-40559747 62 1.04e-04 CAGGGCATGC TGGGACTT GTAGTCTCTA chr16:68482607-68482687 7 1.04e-04 GCCTTC TGGGACTT ATAGTTCTTT chr10:104262591-10426267 46 1.16e-04 CGCAGTACCC TGGGATTT GTGGTCTCCC chr4:56365872-56365952 36 1.16e-04 ggggcaactc tgggattt gagcagtggt chr19:55816995-55817075 67 1.16e-04 CTGGGGCTCA TGGGATTT GTAGTT chr19:55709057-55709137 65 1.16e-04 CATGGTGTGA TGGGATTT GTAGTCCT chr20:20693542-20693622 50 1.50e-04 TTCGGCACGA TGGGAGTC AGTGGGCCGG chr15:40986914-40986994 60 1.50e-04 CATTACCTCT TGGGAGTC GTGGTCTTCG chr2:220150946-220151026 71 1.50e-04 CTGTGCATCT TGGGACAT GT chr19:49310027-49310107 70 1.50e-04 TGGAGGATTC TGGGACAT GCA chr19:54503110-54503190 50 1.77e-04 TGTTGCATGC TGGGAGTA GGGTCTCCAC chr11:65635649-65635729 72 1.95e-04 CAAAGCCCCC TGGGAGAC G chr13:31736477-31736557 19 2.10e-04 GAGAGCATGT TGGGAATC GTAGTCCCGC chr2:86332689-86332769 66 2.10e-04 AAAGCGCTTC TGGGAATC GTAGTTT chr8:22787581-22787661 25 2.44e-04 CCTTTGCTCT TGGGAGAA GGACCCAGAG chr11:65660907-65660987 20 2.44e-04 CATAAGCCCC TGGGAGAA AATGGGCACA chr19:41084535-41084615 19 2.44e-04 TGAGATACAG TGGGAGGT GTAGTTCCCT chr19:49017202-49017282 47 2.44e-04 CAGAGGCTTA TGGGAGGT GTAGTCCTGG chrX:11128216-11128296 8 2.44e-04 GGAATCA TGGGAGAA ACAAGAGAAT chr14:82000452-82000532 67 2.70e-04 GGGGTGCTCT TGGGAAAC GTAGTC chr19:49362012-49362092 66 2.70e-04 TGAGGCCTGA TGGGAAAC GTAGTCC chr5:57878760-57878840 19 3.34e-04 GCTTGCTTGC CGGGAGTT GTAGTTCACC chr19:49618307-49618387 66 3.34e-04 AGGGGTTCTT CGGGAGTT GTAGTTT chr5:178487308-178487388 21 3.34e-04 CGGCGTCCCC TGGGAAGT GTAGTCGGCG chr18:56806956-56807036 20 3.53e-04 CGCAGCATTC TGGGAGTG GTAGTTTTCT chr16:86143898-86143978 20 3.53e-04 AGGAGGCTCA TGGGAGTG CAGAGGAGGC chr4:190971025-190971105 63 3.53e-04 ACCAAAGGGC TGGGAGTG TTTATGAGAC chr11:64038435-64038515 59 3.68e-04 acGCCTGGAG TGGGATCT AGACTACAGA chr19:48866437-48866517 66 4.07e-04 CGAAGCCTGC TGGGAGCC GTAGTCC chr11:134123317-13412339 17 4.07e-04 CCTGTCCCCT TGGGAGCC CGCCTGGCAC chrX:70315582-70315662 39 4.07e-04 CGAAGCAGGA CGGGAGAT GTAGTCCTCA chr13:52157981-52158061 63 4.74e-04 TGGTGCATGT TGGGAGCA GTAAGCGGCC chr10:81586496-81586576 20 4.74e-04 CGTCCCTCGC TGGGAGCA GAGCTAGCCG chr9:15422739-15422819 2 5.06e-04 C CGGGAAAT GTAGTTTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:48732486-48732566 1.5e-05 59_[+1]_13 chr5:74807675-74807755 1.5e-05 32_[+1]_40 chr16:31106264-31106344 1.5e-05 37_[+1]_35 chr14:24701757-24701837 1.5e-05 62_[+1]_10 chr6:43215024-43215104 1.5e-05 59_[+1]_13 chr13:41837951-41838031 1.5e-05 60_[+1]_12 chr19:48848317-48848397 1.5e-05 67_[+1]_5 chr14:81408126-81408206 1.5e-05 9_[+1]_63 chr3:101443649-101443729 1.5e-05 61_[+1]_11 chr19:49422143-49422223 1.5e-05 69_[+1]_3 chr1:154979431-154979511 1.5e-05 62_[+1]_10 chr7:63361078-63361158 1.5e-05 21_[+1]_51 chr19:507896-507976 1.5e-05 56_[+1]_16 chr17:7358828-7358908 1.5e-05 58_[+1]_14 chr19:49148188-49148268 1.5e-05 64_[+1]_8 chr11:64387359-64387439 1.5e-05 18_[+1]_54 chr6:44101510-44101590 1.5e-05 62_[+1]_10 chr17:7118414-7118494 1.5e-05 68_[+1]_4 chr19:49248611-49248691 1.5e-05 67_[+1]_5 chr19:50163172-50163252 1.5e-05 53_[+1]_19 chr19:55690506-55690586 1.5e-05 69_[+1]_3 chr19:49013931-49014011 1.5e-05 71_[+1]_1 chr19:51142563-51142643 1.5e-05 64_[+1]_8 chr19:49228254-49228334 1.5e-05 65_[+1]_7 chr19:49486857-49486937 1.5e-05 63_[+1]_9 chr19:55831281-55831361 1.5e-05 66_[+1]_6 chr19:49416528-49416608 1.5e-05 69_[+1]_3 chr6:6278810-6278890 3.1e-05 24_[+1]_48 chr6:116989943-116990023 3.1e-05 65_[+1]_7 chr9:101172672-101172752 3.1e-05 72_[+1] chr16:30939350-30939430 3.1e-05 54_[+1]_18 chr19:37861884-37861964 3.1e-05 23_[+1]_49 chr19:48907016-48907096 3.1e-05 13_[+1]_59 chr19:49469195-49469275 3.1e-05 69_[+1]_3 chr19:7616335-7616415 3.1e-05 15_[+1]_57 chr2:23598481-23598561 3.1e-05 27_[+1]_45 chr2:27319243-27319323 3.1e-05 66_[+1]_6 chr3:75690318-75690398 3.1e-05 15_[+1]_57 chr19:54682362-54682442 3.1e-05 69_[+1]_3 chr19:49385137-49385217 3.1e-05 72_[+1] chr15:41099664-41099744 4.3e-05 66_[+1]_6 chr21:10163718-10163798 4.3e-05 42_[+1]_30 chr19:55800672-55800752 4.3e-05 37_[+1]_35 chr11:66138863-66138943 4.3e-05 67_[+1]_5 chr22:41840456-41840536 4.3e-05 15_[+1]_57 chr6:31866312-31866392 4.3e-05 67_[+1]_5 chr19:54396428-54396508 4.3e-05 68_[+1]_4 chr11:125773107-12577318 5.5e-05 59_[+1]_13 chr19:50339856-50339936 5.5e-05 41_[+1]_31 chr8:101828535-101828615 5.5e-05 59_[+1]_13 chr19:55629916-55629996 5.5e-05 48_[+1]_24 chr2:220577976-220578056 5.5e-05 57_[+1]_15 chr19:45988715-45988795 5.5e-05 68_[+1]_4 chr10:38383178-38383258 5.5e-05 37_[+1]_35 chr19:38270214-38270294 5.5e-05 31_[+1]_41 chr21:15755517-15755597 5.5e-05 6_[+1]_66 chr2:217277114-217277194 5.5e-05 66_[+1]_6 chr1:202636493-202636573 5.5e-05 40_[+1]_32 chr4:185265098-185265178 5.5e-05 63_[+1]_9 chr17:7094941-7095021 5.5e-05 63_[+1]_9 chr19:48833432-48833512 5.5e-05 69_[+1]_3 chr9:72435526-72435606 5.5e-05 72_[+1] chr19:54411486-54411566 5.5e-05 69_[+1]_3 chr19:54480867-54480947 5.5e-05 64_[+1]_8 chr19:49968755-49968835 7.4e-05 43_[+1]_29 chr2:191631542-191631622 7.4e-05 51_[+1]_21 chr7:57472358-57472438 7.4e-05 26_[+1]_46 chrX:64196372-64196452 7.4e-05 15_[+1]_57 chr3:69788441-69788521 7.4e-05 26_[+1]_46 chr19:20163084-20163164 7.4e-05 33_[+1]_39 chr19:55607058-55607138 8.9e-05 65_[+1]_7 chr7:141264317-141264397 8.9e-05 44_[+1]_28 chr7:150689946-150690026 8.9e-05 71_[+1]_1 chr19:14593237-14593317 8.9e-05 27_[+1]_45 chr1:205414386-205414466 8.9e-05 6_[+1]_66 chr19:44488221-44488301 8.9e-05 49_[+1]_23 chr10:76817578-76817658 0.0001 64_[+1]_8 chr8:134403311-134403391 0.0001 47_[+1]_25 chr11:46134683-46134763 0.0001 63_[+1]_9 chr17:40559667-40559747 0.0001 61_[+1]_11 chr16:68482607-68482687 0.0001 6_[+1]_66 chr10:104262591-10426267 0.00012 45_[+1]_27 chr4:56365872-56365952 0.00012 35_[+1]_37 chr19:55816995-55817075 0.00012 66_[+1]_6 chr19:55709057-55709137 0.00012 64_[+1]_8 chr20:20693542-20693622 0.00015 49_[+1]_23 chr15:40986914-40986994 0.00015 59_[+1]_13 chr2:220150946-220151026 0.00015 70_[+1]_2 chr19:49310027-49310107 0.00015 69_[+1]_3 chr19:54503110-54503190 0.00018 49_[+1]_23 chr11:65635649-65635729 0.0002 71_[+1]_1 chr13:31736477-31736557 0.00021 18_[+1]_54 chr2:86332689-86332769 0.00021 65_[+1]_7 chr8:22787581-22787661 0.00024 24_[+1]_48 chr11:65660907-65660987 0.00024 19_[+1]_53 chr19:41084535-41084615 0.00024 18_[+1]_54 chr19:49017202-49017282 0.00024 46_[+1]_26 chrX:11128216-11128296 0.00024 7_[+1]_65 chr14:82000452-82000532 0.00027 66_[+1]_6 chr19:49362012-49362092 0.00027 65_[+1]_7 chr5:57878760-57878840 0.00033 18_[+1]_54 chr19:49618307-49618387 0.00033 65_[+1]_7 chr5:178487308-178487388 0.00033 20_[+1]_52 chr18:56806956-56807036 0.00035 19_[+1]_53 chr16:86143898-86143978 0.00035 19_[+1]_53 chr4:190971025-190971105 0.00035 62_[+1]_10 chr11:64038435-64038515 0.00037 58_[+1]_14 chr19:48866437-48866517 0.00041 65_[+1]_7 chr11:134123317-13412339 0.00041 16_[+1]_56 chrX:70315582-70315662 0.00041 38_[+1]_34 chr13:52157981-52158061 0.00047 62_[+1]_10 chr10:81586496-81586576 0.00047 19_[+1]_53 chr9:15422739-15422819 0.00051 1_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGARWT width=8 seqs=113 chr20:48732486-48732566 ( 60) TGGGAGTT 1 chr5:74807675-74807755 ( 33) TGGGAGTT 1 chr16:31106264-31106344 ( 38) TGGGAGTT 1 chr14:24701757-24701837 ( 63) TGGGAGTT 1 chr6:43215024-43215104 ( 60) TGGGAGTT 1 chr13:41837951-41838031 ( 61) TGGGAGTT 1 chr19:48848317-48848397 ( 68) TGGGAGTT 1 chr14:81408126-81408206 ( 10) TGGGAGTT 1 chr3:101443649-101443729 ( 62) TGGGAGTT 1 chr19:49422143-49422223 ( 70) TGGGAGTT 1 chr1:154979431-154979511 ( 63) TGGGAGTT 1 chr7:63361078-63361158 ( 22) TGGGAGTT 1 chr19:507896-507976 ( 57) TGGGAGTT 1 chr17:7358828-7358908 ( 59) TGGGAGTT 1 chr19:49148188-49148268 ( 65) TGGGAGTT 1 chr11:64387359-64387439 ( 19) TGGGAGTT 1 chr6:44101510-44101590 ( 63) TGGGAGTT 1 chr17:7118414-7118494 ( 69) TGGGAGTT 1 chr19:49248611-49248691 ( 68) TGGGAGTT 1 chr19:50163172-50163252 ( 54) TGGGAGTT 1 chr19:55690506-55690586 ( 70) TGGGAGTT 1 chr19:49013931-49014011 ( 72) TGGGAGTT 1 chr19:51142563-51142643 ( 65) TGGGAGTT 1 chr19:49228254-49228334 ( 66) TGGGAGTT 1 chr19:49486857-49486937 ( 64) TGGGAGTT 1 chr19:55831281-55831361 ( 67) TGGGAGTT 1 chr19:49416528-49416608 ( 70) TGGGAGTT 1 chr6:6278810-6278890 ( 25) TGGGAGAT 1 chr6:116989943-116990023 ( 66) TGGGAGAT 1 chr9:101172672-101172752 ( 73) TGGGAGAT 1 chr16:30939350-30939430 ( 55) TGGGAGAT 1 chr19:37861884-37861964 ( 24) TGGGAGAT 1 chr19:48907016-48907096 ( 14) TGGGAGAT 1 chr19:49469195-49469275 ( 70) TGGGAGAT 1 chr19:7616335-7616415 ( 16) TGGGAGAT 1 chr2:23598481-23598561 ( 28) TGGGAGAT 1 chr2:27319243-27319323 ( 67) TGGGAGAT 1 chr3:75690318-75690398 ( 16) TGGGAGAT 1 chr19:54682362-54682442 ( 70) TGGGAGAT 1 chr19:49385137-49385217 ( 73) TGGGAGAT 1 chr15:41099664-41099744 ( 67) TGGGAATT 1 chr21:10163718-10163798 ( 43) TGGGAATT 1 chr19:55800672-55800752 ( 38) TGGGAATT 1 chr11:66138863-66138943 ( 68) TGGGAATT 1 chr22:41840456-41840536 ( 16) TGGGAATT 1 chr6:31866312-31866392 ( 68) TGGGAATT 1 chr19:54396428-54396508 ( 69) TGGGAATT 1 chr11:125773107-12577318 ( 60) TGGGAAAT 1 chr19:50339856-50339936 ( 42) TGGGAAAT 1 chr8:101828535-101828615 ( 60) TGGGAAAT 1 chr19:55629916-55629996 ( 49) TGGGAAAT 1 chr2:220577976-220578056 ( 58) TGGGAAAT 1 chr19:45988715-45988795 ( 69) TGGGAAAT 1 chr10:38383178-38383258 ( 38) TGGGAAAT 1 chr19:38270214-38270294 ( 32) TGGGAAAT 1 chr21:15755517-15755597 ( 7) TGGGAAAT 1 chr2:217277114-217277194 ( 67) TGGGAAAT 1 chr1:202636493-202636573 ( 41) TGGGAAAT 1 chr4:185265098-185265178 ( 64) TGGGAAAT 1 chr17:7094941-7095021 ( 64) TGGGAAAT 1 chr19:48833432-48833512 ( 70) TGGGAAAT 1 chr9:72435526-72435606 ( 73) TGGGAAAT 1 chr19:54411486-54411566 ( 70) TGGGAAAT 1 chr19:54480867-54480947 ( 65) TGGGAAAT 1 chr19:49968755-49968835 ( 44) TGGGAGCT 1 chr2:191631542-191631622 ( 52) TGGGAGCT 1 chr7:57472358-57472438 ( 27) TGGGAGCT 1 chrX:64196372-64196452 ( 16) TGGGAGCT 1 chr3:69788441-69788521 ( 27) TGGGAGCT 1 chr19:20163084-20163164 ( 34) TGGGAGCT 1 chr19:55607058-55607138 ( 66) TGGGAACT 1 chr7:141264317-141264397 ( 45) TGGGAACT 1 chr7:150689946-150690026 ( 72) TGGGAACT 1 chr19:14593237-14593317 ( 28) TGGGAACT 1 chr1:205414386-205414466 ( 7) TGGGAACT 1 chr19:44488221-44488301 ( 50) TGGGAACT 1 chr10:76817578-76817658 ( 65) TGGGACTT 1 chr8:134403311-134403391 ( 48) TGGGACTT 1 chr11:46134683-46134763 ( 64) TGGGACTT 1 chr17:40559667-40559747 ( 62) TGGGACTT 1 chr16:68482607-68482687 ( 7) TGGGACTT 1 chr10:104262591-10426267 ( 46) TGGGATTT 1 chr4:56365872-56365952 ( 36) TGGGATTT 1 chr19:55816995-55817075 ( 67) TGGGATTT 1 chr19:55709057-55709137 ( 65) TGGGATTT 1 chr20:20693542-20693622 ( 50) TGGGAGTC 1 chr15:40986914-40986994 ( 60) TGGGAGTC 1 chr2:220150946-220151026 ( 71) TGGGACAT 1 chr19:49310027-49310107 ( 70) TGGGACAT 1 chr19:54503110-54503190 ( 50) TGGGAGTA 1 chr11:65635649-65635729 ( 72) TGGGAGAC 1 chr13:31736477-31736557 ( 19) TGGGAATC 1 chr2:86332689-86332769 ( 66) TGGGAATC 1 chr8:22787581-22787661 ( 25) TGGGAGAA 1 chr11:65660907-65660987 ( 20) TGGGAGAA 1 chr19:41084535-41084615 ( 19) TGGGAGGT 1 chr19:49017202-49017282 ( 47) TGGGAGGT 1 chrX:11128216-11128296 ( 8) TGGGAGAA 1 chr14:82000452-82000532 ( 67) TGGGAAAC 1 chr19:49362012-49362092 ( 66) TGGGAAAC 1 chr5:57878760-57878840 ( 19) CGGGAGTT 1 chr19:49618307-49618387 ( 66) CGGGAGTT 1 chr5:178487308-178487388 ( 21) TGGGAAGT 1 chr18:56806956-56807036 ( 20) TGGGAGTG 1 chr16:86143898-86143978 ( 20) TGGGAGTG 1 chr4:190971025-190971105 ( 63) TGGGAGTG 1 chr11:64038435-64038515 ( 59) TGGGATCT 1 chr19:48866437-48866517 ( 66) TGGGAGCC 1 chr11:134123317-13412339 ( 17) TGGGAGCC 1 chrX:70315582-70315662 ( 39) CGGGAGAT 1 chr13:52157981-52158061 ( 63) TGGGAGCA 1 chr10:81586496-81586576 ( 20) TGGGAGCA 1 chr9:15422739-15422819 ( 2) CGGGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.56083 E= 3.3e-100 -1346 -294 -1346 208 -1346 -1346 185 -1346 -1346 -1346 185 -1346 -1346 -1346 185 -1346 216 -1346 -1346 -1346 51 -213 106 -237 66 -85 -338 104 -208 -177 -338 188 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 113 E= 3.3e-100 0.000000 0.035398 0.000000 0.964602 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.318584 0.061947 0.575221 0.044248 0.353982 0.150442 0.026549 0.469027 0.053097 0.079646 0.026549 0.840708 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGARWT MEME-1 regular expression -------------------------------------------------------------------------------- TGGGA[GA][TA]T -------------------------------------------------------------------------------- Time 4.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAGVA MEME-2 width = 8 sites = 127 llr = 938 E-value = 3.5e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::9129 pos.-specific C :aaa::4: probability G ::::163: matrix T 9::::3:: bits 2.2 1.9 1.7 *** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ***** * (10.7 bits) 0.9 ***** * 0.6 ***** * 0.4 ****** * 0.2 ******** 0.0 -------- Multilevel TCCCAGCA consensus TG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:28284797-28284877 54 1.70e-05 CGGACTACAA TCCCAGCA TACAACGGGA chr19:48965795-48965875 9 1.70e-05 ACTACAAC TCCCAGCA GCCTCTTGGG chr19:44145638-44145718 7 1.70e-05 CACGGC TCCCAGCA TCCTCTCTGT chr19:42772874-42772954 52 1.70e-05 AGACTACGGT TCCCAGCA GGAACTGCGA chr10:92631650-92631730 22 1.70e-05 TAACTACAGC TCCCAGCA TGCCTGAGGG chr19:45988715-45988795 8 1.70e-05 CTACAAG TCCCAGCA GGCCCCGCGG chr19:19887273-19887353 52 1.70e-05 AGACTACAAC TCCCAGCA TACCAGGCGC chrX:149736806-149736886 69 1.70e-05 AAAATGGGCT TCCCAGCA GCCT chr19:48848317-48848397 18 1.70e-05 GGACTACAAC TCCCAGCA GCCCATGCCT chr19:49469195-49469275 9 1.70e-05 ACTACATC TCCCAGCA GGCCGTGCGC chr19:48833432-48833512 9 1.70e-05 ACCACAAC TCCCAGCA GGCAGCGGCG chr7:62528828-62528908 48 1.70e-05 AGACTACAGC TCCCAGCA TGTACAGCAA chr11:46134683-46134763 12 1.70e-05 CAACTACAGG TCCCAGCA TGCAGTGCTC chr2:86332689-86332769 3 1.70e-05 GC TCCCAGCA GGACAAGCGC chr7:63386654-63386734 38 1.70e-05 GGGACTACAA TCCCAGCA TGCAACGGGA chr8:124054097-124054177 11 1.70e-05 CCACTACAAA TCCCAGCA GGCACCGCGC chr19:49148188-49148268 4 1.70e-05 AAC TCCCAGCA GGCCCCAGTG chr17:40559667-40559747 26 1.70e-05 CAACTACACC TCCCAGCA GGCAAGGTGA chr16:1625729-1625809 8 1.70e-05 TGGCCTC TCCCAGCA GGCCATTCAC chr19:48922680-48922760 2 1.70e-05 T TCCCAGCA GCCCCTGGAG chr19:55816995-55817075 8 1.70e-05 CTACAAG TCCCAGCA GCCCCTGGGG chr19:48866437-48866517 5 3.44e-05 CAAC TCCCAGGA GGCGCCAGGG chr2:239142992-239143072 38 3.44e-05 GAACTACATC TCCCAGGA GGCCCCGCGG chr14:59655255-59655335 41 3.44e-05 GGACCACTAC TCCCAGGA GTCTGCGCGC chr13:52157981-52158061 14 3.44e-05 AAACTACGAC TCCCAGGA GGCCACTGGG chr17:34259065-34259145 57 3.44e-05 gtcagtgggc tcccagga tgaagttgct chr3:61235767-61235847 47 3.44e-05 AGACTTCGTC TCCCAGGA GACATCTCGC chr19:49422143-49422223 38 3.44e-05 CAAAAACGGC TCCCAGGA GTGGTAGCGT chr6:10147337-10147417 15 3.44e-05 AAACTCCATT TCCCAGGA agcactgtac chr9:72435526-72435606 11 3.44e-05 AAACTGCGGA TCCCAGGA TGCAGTTCCC chr19:49228254-49228334 6 3.44e-05 ACAAC TCCCAGGA AGCTTCAGGG chr19:55831281-55831361 5 3.44e-05 CAAG TCCCAGGA GGGCCGGGCG chr19:44331383-44331463 36 4.85e-05 GGACTACATT TCCCAGAA GTCTCCGGGG chr6:116989943-116990023 22 4.85e-05 AAAGAAGTAA TCCCAGAA TGCGCCGCTC chr9:101172672-101172752 28 4.85e-05 aaactacatt tcccagaa tcgcctgcca chrX:106362030-106362110 26 4.85e-05 GGACCTCAAG TCCCAGAA CTCCGCGCGG chr14:82000452-82000532 26 4.85e-05 AGACTACAAT TCCCAGAA TGCGCTTCAT chr10:3598574-3598654 8 4.85e-05 CGCTCTC TCCCAGAA TTCCCCTTGT chr19:49479575-49479655 27 4.85e-05 GAACTCTAAC TCCCAGAA GCCTCTGGAC chr8:82755007-82755087 28 4.85e-05 AGACTACAAT TCCCAGAA GGAACTGCGA chr19:54382702-54382782 62 4.85e-05 GGACTACCAG TCCCAGAA TGCACTGCGC chr19:50651536-50651616 15 4.85e-05 GGACTACATT TCCCAGAA ACCATTGAGG chr19:49490330-49490410 26 4.85e-05 ACCCTATGAC TCCCAGAA TGCCCAGGGA chr19:46027169-46027249 5 4.85e-05 CAAA TCCCAGAA TACTCTGTTC chr19:54396428-54396508 7 4.85e-05 TACAGT TCCCAGAA GACCCTAGGA chr19:55607058-55607138 6 6.25e-05 ACAAT TCCCATCA GCCCCCGGGG chr14:106857369-10685744 17 6.25e-05 ACCGCCCACG TCCCATCA GCCCCGCGCC chr2:70974554-70974634 22 6.25e-05 CCATGTGCTC TCCCATCA TGCCATGTGC chr21:43919658-43919738 46 6.25e-05 TGCGGAGCTT TCCCATCA TCCACAGAGG chr14:106938390-10693847 24 6.25e-05 ACCGCCCACG TCCCATCA GCCCCGCGTC chr11:65660907-65660987 40 6.25e-05 TGGGCACAAC TCCCATCA GGCCCAGACG chr11:65635649-65635729 10 6.25e-05 GACTATGAT TCCCATCA TCCCTCAGGG chr11:64376990-64377070 38 6.25e-05 GAACTATAAC TCCCATCA GTCCTTGGAG chr19:50339856-50339936 7 7.68e-05 AGCGTT TCCCATGA TCCTCCTGTG chr3:75834789-75834869 36 7.68e-05 ACACTACATT TCCCATGA GGCTCTGCGG chr7:141264317-141264397 24 7.68e-05 attgggcccc tcccatga cacatgggga chr2:12004152-12004232 46 7.68e-05 tttttttGTC TCCCATGA ATTGCATCAC chr3:97483353-97483433 15 7.68e-05 AGCCTACAAC TCCCATGA TGCTACGCCG chr19:55708317-55708397 19 7.68e-05 AAACTACAAC TCCCATGA GGCCTTGGGC chr19:55690506-55690586 10 7.68e-05 AACTCCAAC TCCCATGA GGCCTTTGCG chr19:54682362-54682442 8 7.68e-05 ctacaat tcccatgA GCCTCCGGGG chr19:55709057-55709137 2 7.68e-05 T TCCCATGA GGCTATGGAT chr19:54480867-54480947 5 7.68e-05 CAAC TCCCATGA TCCACTGCGG chr19:49310027-49310107 9 7.68e-05 ACTACAAC TCCCATGA AGCCCTGGGC chr19:36363224-36363304 21 8.85e-05 GAACTACATC TCCCATAA TGCCAGGCAG chr6:164034893-164034973 39 8.85e-05 TCCTTAGAGT TCCCATAA TCCCTCAGTG chr17:7094941-7095021 9 1.02e-04 ACTCCAAT TCCCAACA GCCCTAGAGG chr17:7118414-7118494 7 1.02e-04 CACAAC TCCCAACA GCGCCATGGG chr15:41099664-41099744 11 1.16e-04 GTACTACAAC TCCCAAGA GTCTAAGCGC chr17:16439099-16439179 22 1.16e-04 GGACCACATT TCCCAAGA ACACTGCGTT chr1:201645477-201645557 29 1.16e-04 CCTTTCTCCT TCCCAAGA CTGAAATGCA chrX:106045774-106045854 67 1.16e-04 AAACTACAAC TCCCAAGA GGTAAA chr19:49250486-49250566 12 1.28e-04 AGACTACAAC TCCCAAAA TGCCCTGGGG chr14:77787563-77787643 68 1.80e-04 CGACAACGAC TCCCGGCA TGCAG chr19:49618307-49618387 6 1.80e-04 ACGCC TCCCGGCA GCTCCCGAGG chr19:49404475-49404555 26 1.80e-04 TGTTGCTAGT TCCCAGTA GCAGTTGATG chr12:56132170-56132250 36 1.80e-04 CCTCCTTCTC TCCCGGCA GCTCATACAT chr14:36295377-36295457 62 1.80e-04 GAACTACAAC TCCCGGCA AGCATCGGAA chr19:55677437-55677517 16 1.80e-04 GGACTACAAA TCCCAGTA GGCGTTCCGC chr19:51142563-51142643 4 1.80e-04 AAT TCCCGGCA GGTCTCGCGC chr4:185265098-185265178 7 2.35e-04 ccaagc tcccacca gtgtctccca chr5:138875540-138875620 14 2.35e-04 TTGGAAGAAG ACCCAGGA AGTATTACTT chr3:184550002-184550082 30 3.04e-04 GCTGTTTCCT ACCCAGAA TGCCTTTCTG chr12:133532884-13353296 12 3.04e-04 GAACTACATT TCCCAGCG TCCCGCTCGC chr12:861517-861597 14 3.04e-04 AAACTACAAC TCCCACGA GGCATTAGGC chr1:202636493-202636573 14 3.04e-04 ggctgaacct acccagaa tccacttgtc chr10:43048328-43048408 42 3.96e-04 ACGCTACATT TCCCACAA GCCCTCGCGC chr18:9137660-9137740 67 3.96e-04 GACAGGCAGT TCCCGTCA TCGTTT chr19:55800672-55800752 25 3.96e-04 AGTCTCTTCC TCCCAGGG ACCCATGGGA chr1:147142662-147142742 64 3.96e-04 AAACTACAAC TCCCACAA GGCTGCGCG chr19:49416528-49416608 8 3.96e-04 CTACAAT TCCCAGGG GCCCTTGAGG chr7:150689946-150690026 12 5.32e-04 GAACTACAAA CCCCAGCA TGCACTCTGG chr12:104323506-10432358 38 5.32e-04 AGACTACGAC CCCCAGCA TTCAATGCAG chr13:41837951-41838031 36 5.32e-04 AAACTACAAC TCCCAGAG CGCCCACCAA chr19:50030962-50031042 17 5.32e-04 AAAATACATT TCCCGTGA GGCGTTGTGA chr19:49224348-49224428 14 5.32e-04 AAACTACAAA CCCCAGCA ACTCCTGGGG chr6:44101510-44101590 23 5.32e-04 GGCATAGCTT TCCCAGCC TTCCCTGCTT chr7:63767727-63767807 4 5.32e-04 ATC TCTCAGCA TGTCTAGCTA chr3:75690318-75690398 40 5.32e-04 TCATAAACAC TCCCAGCC CTTTGGTCAC chr19:49248611-49248691 8 5.32e-04 CTACAAT ACCCATGA GGCCACTGGG chr19:49013931-49014011 12 5.32e-04 GGACTACAAC TCCCGTGA TGCTCTGCGA chr19:49362012-49362092 6 5.32e-04 ACAAT ACCCATGA CACCCAGGGA chr1:113500021-113500101 61 5.62e-04 acttgctgct tgccagga ccctgCCCTT chr14:24701757-24701837 33 5.62e-04 TCTCCCATCG TGCCAGGA GGCGGTCCCG chr3:15141029-15141109 30 5.62e-04 CGATGGAAAG TCCAAGAA TAGAACCACA chr19:36249320-36249400 54 5.62e-04 TCTAAAGGTG TCCAAGAA AGGCTTGAGA chr3:63953418-63953498 16 5.62e-04 TCTGTTGATC TGCCAGGA CCTTTGTAAT chr2:23598481-23598561 17 5.62e-04 attgtctaac tgccagga TGCTGGGAGA chr4:18023789-18023869 11 6.61e-04 AGACTTCACT TCCCAGGC TCCATTTCGC chr9:40792129-40792209 63 6.61e-04 TAACTACAGT TCCCGTAA GCCCGTGCGT chr10:76817578-76817658 24 6.61e-04 agactacatt tcccaggc tcccttgcag chr14:90620620-90620700 68 6.61e-04 ATGCTCTCCC ACCCATAA TGCCT chr20:20693542-20693622 21 6.87e-04 GAGACAGTCC TCCAATCA GGCTGGCGGT chr11:64715039-64715119 54 7.64e-04 AGAGACATGG TCTCAGAA ATCTAGCCAA chr19:50169437-50169517 3 7.64e-04 GA TTCCAGCA GGGGTCGGAG chr21:10163718-10163798 63 8.08e-04 AGTGTCACCT TCCAATGA TGTTACCATC chr22:41840456-41840536 73 8.08e-04 TGACCTACTT TCCCTGCA chr19:50163172-50163252 4 8.08e-04 AAC TCCCTGCA GCCCCTGCTG chr19:12032839-12032919 7 9.25e-04 gctcac ttccagga ccttatcaag chr2:217277114-217277194 19 9.25e-04 CGCGTTCTCG TCTCATCA TTCTTACTTT chr19:49385137-49385217 12 9.25e-04 AAACTACAAT TCCCAATA GGCTTTGCAA chr19:49486857-49486937 4 9.25e-04 AAC CCCCATCA GCGCCTAGGG chr11:64387359-64387439 37 1.06e-03 GTGGTTCTGG ACCCAAGA ACTGATGGGA chr11:60681329-60681409 36 1.17e-03 GAACTACATG ACCCAAAA TGCCGAGTGG chr14:81408126-81408206 64 1.17e-03 AGGGAGAGAG TCCCGAAA AGGAACTGC chr19:56989398-56989478 58 1.17e-03 GGACTACATT TCCCAACG GCCCCTGCAC chr1:154979431-154979511 28 1.23e-03 GGACTACAAC TCCCAAGG TACATACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:28284797-28284877 1.7e-05 53_[+2]_19 chr19:48965795-48965875 1.7e-05 8_[+2]_64 chr19:44145638-44145718 1.7e-05 6_[+2]_66 chr19:42772874-42772954 1.7e-05 51_[+2]_21 chr10:92631650-92631730 1.7e-05 21_[+2]_51 chr19:45988715-45988795 1.7e-05 7_[+2]_65 chr19:19887273-19887353 1.7e-05 51_[+2]_21 chrX:149736806-149736886 1.7e-05 68_[+2]_4 chr19:48848317-48848397 1.7e-05 17_[+2]_55 chr19:49469195-49469275 1.7e-05 8_[+2]_64 chr19:48833432-48833512 1.7e-05 8_[+2]_64 chr7:62528828-62528908 1.7e-05 47_[+2]_25 chr11:46134683-46134763 1.7e-05 11_[+2]_61 chr2:86332689-86332769 1.7e-05 2_[+2]_70 chr7:63386654-63386734 1.7e-05 37_[+2]_35 chr8:124054097-124054177 1.7e-05 10_[+2]_62 chr19:49148188-49148268 1.7e-05 3_[+2]_69 chr17:40559667-40559747 1.7e-05 25_[+2]_47 chr16:1625729-1625809 1.7e-05 7_[+2]_65 chr19:48922680-48922760 1.7e-05 1_[+2]_71 chr19:55816995-55817075 1.7e-05 7_[+2]_65 chr19:48866437-48866517 3.4e-05 4_[+2]_68 chr2:239142992-239143072 3.4e-05 37_[+2]_35 chr14:59655255-59655335 3.4e-05 40_[+2]_32 chr13:52157981-52158061 3.4e-05 13_[+2]_59 chr17:34259065-34259145 3.4e-05 56_[+2]_16 chr3:61235767-61235847 3.4e-05 46_[+2]_26 chr19:49422143-49422223 3.4e-05 37_[+2]_35 chr6:10147337-10147417 3.4e-05 14_[+2]_58 chr9:72435526-72435606 3.4e-05 10_[+2]_62 chr19:49228254-49228334 3.4e-05 5_[+2]_67 chr19:55831281-55831361 3.4e-05 4_[+2]_68 chr19:44331383-44331463 4.8e-05 35_[+2]_37 chr6:116989943-116990023 4.8e-05 21_[+2]_51 chr9:101172672-101172752 4.8e-05 27_[+2]_45 chrX:106362030-106362110 4.8e-05 25_[+2]_47 chr14:82000452-82000532 4.8e-05 25_[+2]_47 chr10:3598574-3598654 4.8e-05 7_[+2]_65 chr19:49479575-49479655 4.8e-05 26_[+2]_46 chr8:82755007-82755087 4.8e-05 27_[+2]_45 chr19:54382702-54382782 4.8e-05 61_[+2]_11 chr19:50651536-50651616 4.8e-05 14_[+2]_58 chr19:49490330-49490410 4.8e-05 25_[+2]_47 chr19:46027169-46027249 4.8e-05 4_[+2]_68 chr19:54396428-54396508 4.8e-05 6_[+2]_66 chr19:55607058-55607138 6.3e-05 5_[+2]_67 chr14:106857369-10685744 6.3e-05 16_[+2]_56 chr2:70974554-70974634 6.3e-05 21_[+2]_51 chr21:43919658-43919738 6.3e-05 45_[+2]_27 chr14:106938390-10693847 6.3e-05 23_[+2]_49 chr11:65660907-65660987 6.3e-05 39_[+2]_33 chr11:65635649-65635729 6.3e-05 9_[+2]_63 chr11:64376990-64377070 6.3e-05 37_[+2]_35 chr19:50339856-50339936 7.7e-05 6_[+2]_66 chr3:75834789-75834869 7.7e-05 35_[+2]_37 chr7:141264317-141264397 7.7e-05 23_[+2]_49 chr2:12004152-12004232 7.7e-05 45_[+2]_27 chr3:97483353-97483433 7.7e-05 14_[+2]_58 chr19:55708317-55708397 7.7e-05 18_[+2]_54 chr19:55690506-55690586 7.7e-05 9_[+2]_63 chr19:54682362-54682442 7.7e-05 7_[+2]_65 chr19:55709057-55709137 7.7e-05 1_[+2]_71 chr19:54480867-54480947 7.7e-05 4_[+2]_68 chr19:49310027-49310107 7.7e-05 8_[+2]_64 chr19:36363224-36363304 8.8e-05 20_[+2]_52 chr6:164034893-164034973 8.8e-05 38_[+2]_34 chr17:7094941-7095021 0.0001 8_[+2]_64 chr17:7118414-7118494 0.0001 6_[+2]_66 chr15:41099664-41099744 0.00012 10_[+2]_62 chr17:16439099-16439179 0.00012 21_[+2]_51 chr1:201645477-201645557 0.00012 28_[+2]_44 chrX:106045774-106045854 0.00012 66_[+2]_6 chr19:49250486-49250566 0.00013 11_[+2]_61 chr14:77787563-77787643 0.00018 67_[+2]_5 chr19:49618307-49618387 0.00018 5_[+2]_67 chr19:49404475-49404555 0.00018 25_[+2]_47 chr12:56132170-56132250 0.00018 35_[+2]_37 chr14:36295377-36295457 0.00018 61_[+2]_11 chr19:55677437-55677517 0.00018 15_[+2]_57 chr19:51142563-51142643 0.00018 3_[+2]_69 chr4:185265098-185265178 0.00023 6_[+2]_66 chr5:138875540-138875620 0.00023 13_[+2]_59 chr3:184550002-184550082 0.0003 29_[+2]_43 chr12:133532884-13353296 0.0003 11_[+2]_61 chr12:861517-861597 0.0003 13_[+2]_59 chr1:202636493-202636573 0.0003 13_[+2]_59 chr10:43048328-43048408 0.0004 41_[+2]_31 chr18:9137660-9137740 0.0004 66_[+2]_6 chr19:55800672-55800752 0.0004 24_[+2]_48 chr1:147142662-147142742 0.0004 63_[+2]_9 chr19:49416528-49416608 0.0004 7_[+2]_65 chr7:150689946-150690026 0.00053 11_[+2]_61 chr12:104323506-10432358 0.00053 37_[+2]_35 chr13:41837951-41838031 0.00053 35_[+2]_37 chr19:50030962-50031042 0.00053 16_[+2]_56 chr19:49224348-49224428 0.00053 13_[+2]_59 chr6:44101510-44101590 0.00053 22_[+2]_50 chr7:63767727-63767807 0.00053 3_[+2]_69 chr3:75690318-75690398 0.00053 39_[+2]_33 chr19:49248611-49248691 0.00053 7_[+2]_65 chr19:49013931-49014011 0.00053 11_[+2]_61 chr19:49362012-49362092 0.00053 5_[+2]_67 chr1:113500021-113500101 0.00056 60_[+2]_12 chr14:24701757-24701837 0.00056 32_[+2]_40 chr3:15141029-15141109 0.00056 29_[+2]_43 chr19:36249320-36249400 0.00056 53_[+2]_19 chr3:63953418-63953498 0.00056 15_[+2]_57 chr2:23598481-23598561 0.00056 16_[+2]_56 chr4:18023789-18023869 0.00066 10_[+2]_62 chr9:40792129-40792209 0.00066 62_[+2]_10 chr10:76817578-76817658 0.00066 23_[+2]_49 chr14:90620620-90620700 0.00066 67_[+2]_5 chr20:20693542-20693622 0.00069 20_[+2]_52 chr11:64715039-64715119 0.00076 53_[+2]_19 chr19:50169437-50169517 0.00076 2_[+2]_70 chr21:10163718-10163798 0.00081 62_[+2]_10 chr22:41840456-41840536 0.00081 72_[+2] chr19:50163172-50163252 0.00081 3_[+2]_69 chr19:12032839-12032919 0.00092 6_[+2]_66 chr2:217277114-217277194 0.00092 18_[+2]_54 chr19:49385137-49385217 0.00092 11_[+2]_61 chr19:49486857-49486937 0.00092 3_[+2]_69 chr11:64387359-64387439 0.0011 36_[+2]_36 chr11:60681329-60681409 0.0012 35_[+2]_37 chr14:81408126-81408206 0.0012 63_[+2]_9 chr19:56989398-56989478 0.0012 57_[+2]_15 chr1:154979431-154979511 0.0012 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAGVA width=8 seqs=127 chr19:28284797-28284877 ( 54) TCCCAGCA 1 chr19:48965795-48965875 ( 9) TCCCAGCA 1 chr19:44145638-44145718 ( 7) TCCCAGCA 1 chr19:42772874-42772954 ( 52) TCCCAGCA 1 chr10:92631650-92631730 ( 22) TCCCAGCA 1 chr19:45988715-45988795 ( 8) TCCCAGCA 1 chr19:19887273-19887353 ( 52) TCCCAGCA 1 chrX:149736806-149736886 ( 69) TCCCAGCA 1 chr19:48848317-48848397 ( 18) TCCCAGCA 1 chr19:49469195-49469275 ( 9) TCCCAGCA 1 chr19:48833432-48833512 ( 9) TCCCAGCA 1 chr7:62528828-62528908 ( 48) TCCCAGCA 1 chr11:46134683-46134763 ( 12) TCCCAGCA 1 chr2:86332689-86332769 ( 3) TCCCAGCA 1 chr7:63386654-63386734 ( 38) TCCCAGCA 1 chr8:124054097-124054177 ( 11) TCCCAGCA 1 chr19:49148188-49148268 ( 4) TCCCAGCA 1 chr17:40559667-40559747 ( 26) TCCCAGCA 1 chr16:1625729-1625809 ( 8) TCCCAGCA 1 chr19:48922680-48922760 ( 2) TCCCAGCA 1 chr19:55816995-55817075 ( 8) TCCCAGCA 1 chr19:48866437-48866517 ( 5) TCCCAGGA 1 chr2:239142992-239143072 ( 38) TCCCAGGA 1 chr14:59655255-59655335 ( 41) TCCCAGGA 1 chr13:52157981-52158061 ( 14) TCCCAGGA 1 chr17:34259065-34259145 ( 57) TCCCAGGA 1 chr3:61235767-61235847 ( 47) TCCCAGGA 1 chr19:49422143-49422223 ( 38) TCCCAGGA 1 chr6:10147337-10147417 ( 15) TCCCAGGA 1 chr9:72435526-72435606 ( 11) TCCCAGGA 1 chr19:49228254-49228334 ( 6) TCCCAGGA 1 chr19:55831281-55831361 ( 5) TCCCAGGA 1 chr19:44331383-44331463 ( 36) TCCCAGAA 1 chr6:116989943-116990023 ( 22) TCCCAGAA 1 chr9:101172672-101172752 ( 28) TCCCAGAA 1 chrX:106362030-106362110 ( 26) TCCCAGAA 1 chr14:82000452-82000532 ( 26) TCCCAGAA 1 chr10:3598574-3598654 ( 8) TCCCAGAA 1 chr19:49479575-49479655 ( 27) TCCCAGAA 1 chr8:82755007-82755087 ( 28) TCCCAGAA 1 chr19:54382702-54382782 ( 62) TCCCAGAA 1 chr19:50651536-50651616 ( 15) TCCCAGAA 1 chr19:49490330-49490410 ( 26) TCCCAGAA 1 chr19:46027169-46027249 ( 5) TCCCAGAA 1 chr19:54396428-54396508 ( 7) TCCCAGAA 1 chr19:55607058-55607138 ( 6) TCCCATCA 1 chr14:106857369-10685744 ( 17) TCCCATCA 1 chr2:70974554-70974634 ( 22) TCCCATCA 1 chr21:43919658-43919738 ( 46) TCCCATCA 1 chr14:106938390-10693847 ( 24) TCCCATCA 1 chr11:65660907-65660987 ( 40) TCCCATCA 1 chr11:65635649-65635729 ( 10) TCCCATCA 1 chr11:64376990-64377070 ( 38) TCCCATCA 1 chr19:50339856-50339936 ( 7) TCCCATGA 1 chr3:75834789-75834869 ( 36) TCCCATGA 1 chr7:141264317-141264397 ( 24) TCCCATGA 1 chr2:12004152-12004232 ( 46) TCCCATGA 1 chr3:97483353-97483433 ( 15) TCCCATGA 1 chr19:55708317-55708397 ( 19) TCCCATGA 1 chr19:55690506-55690586 ( 10) TCCCATGA 1 chr19:54682362-54682442 ( 8) TCCCATGA 1 chr19:55709057-55709137 ( 2) TCCCATGA 1 chr19:54480867-54480947 ( 5) TCCCATGA 1 chr19:49310027-49310107 ( 9) TCCCATGA 1 chr19:36363224-36363304 ( 21) TCCCATAA 1 chr6:164034893-164034973 ( 39) TCCCATAA 1 chr17:7094941-7095021 ( 9) TCCCAACA 1 chr17:7118414-7118494 ( 7) TCCCAACA 1 chr15:41099664-41099744 ( 11) TCCCAAGA 1 chr17:16439099-16439179 ( 22) TCCCAAGA 1 chr1:201645477-201645557 ( 29) TCCCAAGA 1 chrX:106045774-106045854 ( 67) TCCCAAGA 1 chr19:49250486-49250566 ( 12) TCCCAAAA 1 chr14:77787563-77787643 ( 68) TCCCGGCA 1 chr19:49618307-49618387 ( 6) TCCCGGCA 1 chr19:49404475-49404555 ( 26) TCCCAGTA 1 chr12:56132170-56132250 ( 36) TCCCGGCA 1 chr14:36295377-36295457 ( 62) TCCCGGCA 1 chr19:55677437-55677517 ( 16) TCCCAGTA 1 chr19:51142563-51142643 ( 4) TCCCGGCA 1 chr4:185265098-185265178 ( 7) TCCCACCA 1 chr5:138875540-138875620 ( 14) ACCCAGGA 1 chr3:184550002-184550082 ( 30) ACCCAGAA 1 chr12:133532884-13353296 ( 12) TCCCAGCG 1 chr12:861517-861597 ( 14) TCCCACGA 1 chr1:202636493-202636573 ( 14) ACCCAGAA 1 chr10:43048328-43048408 ( 42) TCCCACAA 1 chr18:9137660-9137740 ( 67) TCCCGTCA 1 chr19:55800672-55800752 ( 25) TCCCAGGG 1 chr1:147142662-147142742 ( 64) TCCCACAA 1 chr19:49416528-49416608 ( 8) TCCCAGGG 1 chr7:150689946-150690026 ( 12) CCCCAGCA 1 chr12:104323506-10432358 ( 38) CCCCAGCA 1 chr13:41837951-41838031 ( 36) TCCCAGAG 1 chr19:50030962-50031042 ( 17) TCCCGTGA 1 chr19:49224348-49224428 ( 14) CCCCAGCA 1 chr6:44101510-44101590 ( 23) TCCCAGCC 1 chr7:63767727-63767807 ( 4) TCTCAGCA 1 chr3:75690318-75690398 ( 40) TCCCAGCC 1 chr19:49248611-49248691 ( 8) ACCCATGA 1 chr19:49013931-49014011 ( 12) TCCCGTGA 1 chr19:49362012-49362092 ( 6) ACCCATGA 1 chr1:113500021-113500101 ( 61) TGCCAGGA 1 chr14:24701757-24701837 ( 33) TGCCAGGA 1 chr3:15141029-15141109 ( 30) TCCAAGAA 1 chr19:36249320-36249400 ( 54) TCCAAGAA 1 chr3:63953418-63953498 ( 16) TGCCAGGA 1 chr2:23598481-23598561 ( 17) TGCCAGGA 1 chr4:18023789-18023869 ( 11) TCCCAGGC 1 chr9:40792129-40792209 ( 63) TCCCGTAA 1 chr10:76817578-76817658 ( 24) TCCCAGGC 1 chr14:90620620-90620700 ( 68) ACCCATAA 1 chr20:20693542-20693622 ( 21) TCCAATCA 1 chr11:64715039-64715119 ( 54) TCTCAGAA 1 chr19:50169437-50169517 ( 3) TTCCAGCA 1 chr21:10163718-10163798 ( 63) TCCAATGA 1 chr22:41840456-41840536 ( 73) TCCCTGCA 1 chr19:50163172-50163252 ( 4) TCCCTGCA 1 chr19:12032839-12032919 ( 7) TTCCAGGA 1 chr2:217277114-217277194 ( 19) TCTCATCA 1 chr19:49385137-49385217 ( 12) TCCCAATA 1 chr19:49486857-49486937 ( 4) CCCCATCA 1 chr11:64387359-64387439 ( 37) ACCCAAGA 1 chr11:60681329-60681409 ( 36) ACCCAAAA 1 chr14:81408126-81408206 ( 64) TCCCGAAA 1 chr19:56989398-56989478 ( 58) TCCCAACG 1 chr1:154979431-154979511 ( 28) TCCCAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.89027 E= 3.5e-075 -183 -310 -1363 199 -1363 181 -313 -386 -1363 185 -1363 -327 -283 184 -1363 -1363 201 -1363 -181 -386 -113 -310 115 14 -2 59 33 -327 204 -310 -255 -1363 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 3.5e-075 0.062992 0.031496 0.000000 0.905512 0.000000 0.952756 0.031496 0.015748 0.000000 0.976378 0.000000 0.023622 0.031496 0.968504 0.000000 0.000000 0.905512 0.000000 0.078740 0.015748 0.102362 0.031496 0.614173 0.251969 0.220472 0.409449 0.346457 0.023622 0.921260 0.031496 0.047244 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-2 regular expression -------------------------------------------------------------------------------- TCCCA[GT][CGA]A -------------------------------------------------------------------------------- Time 8.20 secs. ******************************************************************************** ******************************************************************************** MOTIF RACTACAA MEME-3 width = 8 sites = 60 llr = 549 E-value = 1.8e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5a::a:a6 pos.-specific C 1:a::a:1 probability G 5:::::11 matrix T :::a:::2 bits 2.2 * ** 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (13.2 bits) 0.9 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACTACAA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:15422739-15422819 68 9.44e-06 cgccccAAGC AACTACAA CTTCC chr7:150689946-150690026 3 9.44e-06 AG AACTACAA ACCCCAGCAT chr12:861517-861597 5 9.44e-06 AGAA AACTACAA CTCCCACGAG chrX:149736806-149736886 20 9.44e-06 CCATATTGCG AACTACAA TTCCCAGCTG chr13:41837951-41838031 27 9.44e-06 GGTGGGACTA AACTACAA CTCCCAGAGC chr19:49224348-49224428 5 9.44e-06 AAAA AACTACAA ACCCCAGCAA chr19:49422143-49422223 1 9.44e-06 . AACTACAA CTCCCATCAG chr2:136288400-136288480 5 9.44e-06 CAGG AACTACAA TTCCAGCCAA chr1:147142662-147142742 55 9.44e-06 GAGCTGCGGA AACTACAA CTCCCACAAG chr19:55708317-55708397 10 9.44e-06 GTCCTTTTA AACTACAA CTCCCATGAG chr14:36295377-36295457 53 9.44e-06 GAGACCTACG AACTACAA CTCCCGGCAA chrX:106045774-106045854 58 9.44e-06 GCGCGTAGGA AACTACAA CTCCCAAGAG chr19:49385137-49385217 3 9.44e-06 TA AACTACAA TTCCCAATAG chr19:28284797-28284877 46 2.11e-05 AGGGCGGCCG GACTACAA TCCCAGCATA chr11:134123317-13412339 59 2.11e-05 CTCGTGGGAG GACTACAA CCCCCAGGGT chr19:19887273-19887353 43 2.11e-05 GCAGTAAAGA GACTACAA CTCCCAGCAT chr14:82000452-82000532 17 2.11e-05 GCTCATCCGA GACTACAA TTCCCAGAAT chr19:48848317-48848397 9 2.11e-05 AGGCTCAG GACTACAA CTCCCAGCAG chr2:39005278-39005358 8 2.11e-05 CAAGTAG GACTACAA AACAGAGGTT chrX:64196372-64196452 70 2.11e-05 GGGCCTGTAG GACTACAA CTC chr11:66138863-66138943 19 2.11e-05 CTCCGGAGCG GACTACAA CCCCGATCAC chr8:82755007-82755087 19 2.11e-05 AACAGGAGAA GACTACAA TTCCCAGAAG chr1:154979431-154979511 19 2.11e-05 TCTCAAGGGG GACTACAA CTCCCAAGGT chr7:63361078-63361158 73 2.11e-05 GGCACTTCGG GACTACAA chr19:49250486-49250566 3 2.11e-05 AA GACTACAA CTCCCAAAAT chr7:63386654-63386734 30 2.11e-05 AAGGCTGCGG GACTACAA TCCCAGCATG chr19:55815797-55815877 4 2.11e-05 TTG GACTACAA GTTGCAGCAT chr19:55677437-55677517 7 2.11e-05 AAAATG GACTACAA ATCCCAGTAG chr19:49013931-49014011 3 2.11e-05 TG GACTACAA CTCCCGTGAT chr19:36363224-36363304 12 3.07e-05 CCCAGTCCAG AACTACAT CTCCCATAAT chr9:101172672-101172752 19 3.07e-05 gaagccctga aactacat ttcccagaat chr2:239142992-239143072 29 3.07e-05 AAGGGGTCGG AACTACAT CTCCCAGGAG chr12:133532884-13353296 3 3.07e-05 AG AACTACAT TTCCCAGCGT chr11:60681329-60681409 27 3.07e-05 GTAGCTCTAG AACTACAT GACCCAAAAT chr14:24701757-24701837 16 3.07e-05 GGGCAGAACG AACTACAT CTCCCATCGT chr8:134403311-134403391 7 3.07e-05 aaataa aactacat ttcccagttt chr19:44331383-44331463 27 4.25e-05 TGCCGCTGTG GACTACAT TTCCCAGAAG chr10:76817578-76817658 15 4.25e-05 taaaataaaa gactacat ttcccaggct chr19:56989398-56989478 49 4.25e-05 GTGGCGCTCG GACTACAT TTCCCAACGG chr19:50651536-50651616 6 4.25e-05 AGCTG GACTACAT TTCCCAGAAA chr19:54411486-54411566 1 4.25e-05 . GACTACAT TTCCCCGCAG chr10:92631650-92631730 13 5.42e-05 TGCGCAGGTT AACTACAG CTCCCAGCAT chr9:40792129-40792209 45 5.42e-05 TAACATTGAA AACTACAG TAACTACAGT chr11:46134683-46134763 3 5.42e-05 TC AACTACAG GTCCCAGCAT chr1:205414386-205414466 70 5.42e-05 TGGTGGCACA AACTACAG ATC chr5:57878760-57878840 71 7.99e-05 CGGAGGGCGA GACTACAG CT chr7:62528828-62528908 39 7.99e-05 GCGGTGAAAA GACTACAG CTCCCAGCAT chr11:64038435-64038515 68 7.99e-05 GTGGGATCTA GACTACAG ATCCC chr8:124054097-124054177 2 7.99e-05 C CACTACAA ATCCCAGCAG chr3:75690318-75690398 68 7.99e-05 AGGGCTGCAG CACTACAA TCCTA chr19:50169437-50169517 27 9.14e-05 GGAGATTTGG AACTACAC CTCACAGCAG chr17:40559667-40559747 17 9.14e-05 TCTGTTACCC AACTACAC CTCCCAGCAG chr19:44860862-44860942 58 1.05e-04 GAAGTTACCC GACTACAC GGGGCTCCCA chr6:10147337-10147417 41 1.05e-04 actttgcaag gactacac ctcccaggat chr3:75834789-75834869 27 1.29e-04 TGGAAGGTGA CACTACAT TTCCCATGAG chr1:205744601-205744681 6 1.29e-04 TGTGG CACTACAT TTCCCAGCTT chr13:52157981-52158061 5 1.29e-04 AAGA AACTACGA CTCCCAGGAG chr7:20257086-20257166 44 1.29e-04 AAGGCAAGAG AACTACGA TACCCACAAT chr15:41099664-41099744 2 1.53e-04 G TACTACAA CTCCCAAGAG chr12:104323506-10432358 29 1.53e-04 AGAGACCAAA GACTACGA CCCCCAGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:15422739-15422819 9.4e-06 67_[+3]_5 chr7:150689946-150690026 9.4e-06 2_[+3]_70 chr12:861517-861597 9.4e-06 4_[+3]_68 chrX:149736806-149736886 9.4e-06 19_[+3]_53 chr13:41837951-41838031 9.4e-06 26_[+3]_46 chr19:49224348-49224428 9.4e-06 4_[+3]_68 chr19:49422143-49422223 9.4e-06 [+3]_72 chr2:136288400-136288480 9.4e-06 4_[+3]_68 chr1:147142662-147142742 9.4e-06 54_[+3]_18 chr19:55708317-55708397 9.4e-06 9_[+3]_63 chr14:36295377-36295457 9.4e-06 52_[+3]_20 chrX:106045774-106045854 9.4e-06 57_[+3]_15 chr19:49385137-49385217 9.4e-06 2_[+3]_70 chr19:28284797-28284877 2.1e-05 45_[+3]_27 chr11:134123317-13412339 2.1e-05 58_[+3]_14 chr19:19887273-19887353 2.1e-05 42_[+3]_30 chr14:82000452-82000532 2.1e-05 16_[+3]_56 chr19:48848317-48848397 2.1e-05 8_[+3]_64 chr2:39005278-39005358 2.1e-05 7_[+3]_65 chrX:64196372-64196452 2.1e-05 69_[+3]_3 chr11:66138863-66138943 2.1e-05 18_[+3]_54 chr8:82755007-82755087 2.1e-05 18_[+3]_54 chr1:154979431-154979511 2.1e-05 18_[+3]_54 chr7:63361078-63361158 2.1e-05 72_[+3] chr19:49250486-49250566 2.1e-05 2_[+3]_70 chr7:63386654-63386734 2.1e-05 29_[+3]_43 chr19:55815797-55815877 2.1e-05 3_[+3]_69 chr19:55677437-55677517 2.1e-05 6_[+3]_66 chr19:49013931-49014011 2.1e-05 2_[+3]_70 chr19:36363224-36363304 3.1e-05 11_[+3]_61 chr9:101172672-101172752 3.1e-05 18_[+3]_54 chr2:239142992-239143072 3.1e-05 28_[+3]_44 chr12:133532884-13353296 3.1e-05 2_[+3]_70 chr11:60681329-60681409 3.1e-05 26_[+3]_46 chr14:24701757-24701837 3.1e-05 15_[+3]_57 chr8:134403311-134403391 3.1e-05 6_[+3]_66 chr19:44331383-44331463 4.3e-05 26_[+3]_46 chr10:76817578-76817658 4.3e-05 14_[+3]_58 chr19:56989398-56989478 4.3e-05 48_[+3]_24 chr19:50651536-50651616 4.3e-05 5_[+3]_67 chr19:54411486-54411566 4.3e-05 [+3]_72 chr10:92631650-92631730 5.4e-05 12_[+3]_60 chr9:40792129-40792209 5.4e-05 44_[+3]_28 chr11:46134683-46134763 5.4e-05 2_[+3]_70 chr1:205414386-205414466 5.4e-05 69_[+3]_3 chr5:57878760-57878840 8e-05 70_[+3]_2 chr7:62528828-62528908 8e-05 38_[+3]_34 chr11:64038435-64038515 8e-05 67_[+3]_5 chr8:124054097-124054177 8e-05 1_[+3]_71 chr3:75690318-75690398 8e-05 67_[+3]_5 chr19:50169437-50169517 9.1e-05 26_[+3]_46 chr17:40559667-40559747 9.1e-05 16_[+3]_56 chr19:44860862-44860942 0.00011 57_[+3]_15 chr6:10147337-10147417 0.00011 40_[+3]_32 chr3:75834789-75834869 0.00013 26_[+3]_46 chr1:205744601-205744681 0.00013 5_[+3]_67 chr13:52157981-52158061 0.00013 4_[+3]_68 chr7:20257086-20257166 0.00013 43_[+3]_29 chr15:41099664-41099744 0.00015 1_[+3]_71 chr12:104323506-10432358 0.00015 28_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RACTACAA width=8 seqs=60 chr9:15422739-15422819 ( 68) AACTACAA 1 chr7:150689946-150690026 ( 3) AACTACAA 1 chr12:861517-861597 ( 5) AACTACAA 1 chrX:149736806-149736886 ( 20) AACTACAA 1 chr13:41837951-41838031 ( 27) AACTACAA 1 chr19:49224348-49224428 ( 5) AACTACAA 1 chr19:49422143-49422223 ( 1) AACTACAA 1 chr2:136288400-136288480 ( 5) AACTACAA 1 chr1:147142662-147142742 ( 55) AACTACAA 1 chr19:55708317-55708397 ( 10) AACTACAA 1 chr14:36295377-36295457 ( 53) AACTACAA 1 chrX:106045774-106045854 ( 58) AACTACAA 1 chr19:49385137-49385217 ( 3) AACTACAA 1 chr19:28284797-28284877 ( 46) GACTACAA 1 chr11:134123317-13412339 ( 59) GACTACAA 1 chr19:19887273-19887353 ( 43) GACTACAA 1 chr14:82000452-82000532 ( 17) GACTACAA 1 chr19:48848317-48848397 ( 9) GACTACAA 1 chr2:39005278-39005358 ( 8) GACTACAA 1 chrX:64196372-64196452 ( 70) GACTACAA 1 chr11:66138863-66138943 ( 19) GACTACAA 1 chr8:82755007-82755087 ( 19) GACTACAA 1 chr1:154979431-154979511 ( 19) GACTACAA 1 chr7:63361078-63361158 ( 73) GACTACAA 1 chr19:49250486-49250566 ( 3) GACTACAA 1 chr7:63386654-63386734 ( 30) GACTACAA 1 chr19:55815797-55815877 ( 4) GACTACAA 1 chr19:55677437-55677517 ( 7) GACTACAA 1 chr19:49013931-49014011 ( 3) GACTACAA 1 chr19:36363224-36363304 ( 12) AACTACAT 1 chr9:101172672-101172752 ( 19) AACTACAT 1 chr2:239142992-239143072 ( 29) AACTACAT 1 chr12:133532884-13353296 ( 3) AACTACAT 1 chr11:60681329-60681409 ( 27) AACTACAT 1 chr14:24701757-24701837 ( 16) AACTACAT 1 chr8:134403311-134403391 ( 7) AACTACAT 1 chr19:44331383-44331463 ( 27) GACTACAT 1 chr10:76817578-76817658 ( 15) GACTACAT 1 chr19:56989398-56989478 ( 49) GACTACAT 1 chr19:50651536-50651616 ( 6) GACTACAT 1 chr19:54411486-54411566 ( 1) GACTACAT 1 chr10:92631650-92631730 ( 13) AACTACAG 1 chr9:40792129-40792209 ( 45) AACTACAG 1 chr11:46134683-46134763 ( 3) AACTACAG 1 chr1:205414386-205414466 ( 70) AACTACAG 1 chr5:57878760-57878840 ( 71) GACTACAG 1 chr7:62528828-62528908 ( 39) GACTACAG 1 chr11:64038435-64038515 ( 68) GACTACAG 1 chr8:124054097-124054177 ( 2) CACTACAA 1 chr3:75690318-75690398 ( 68) CACTACAA 1 chr19:50169437-50169517 ( 27) AACTACAC 1 chr17:40559667-40559747 ( 17) AACTACAC 1 chr19:44860862-44860942 ( 58) GACTACAC 1 chr6:10147337-10147417 ( 41) GACTACAC 1 chr3:75834789-75834869 ( 27) CACTACAT 1 chr1:205744601-205744681 ( 6) CACTACAT 1 chr13:52157981-52158061 ( 5) AACTACGA 1 chr7:20257086-20257166 ( 44) AACTACGA 1 chr15:41099664-41099744 ( 2) TACTACAA 1 chr12:104323506-10432358 ( 29) GACTACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 1.8e-050 106 -202 70 -377 216 -1255 -1255 -1255 -1255 188 -1255 -1255 -1255 -1255 -1255 213 216 -1255 -1255 -1255 -1255 188 -1255 -1255 208 -1255 -247 -1255 138 -202 -124 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.8e-050 0.466667 0.066667 0.450000 0.016667 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.583333 0.066667 0.116667 0.233333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTACAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]ACTACA[AT] -------------------------------------------------------------------------------- Time 11.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GTAGTYYH MEME-4 width = 8 sites = 52 llr = 442 E-value = 2.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::2 pos.-specific C :::::563 probability G a::a:::1 matrix T :a::a544 bits 2.2 ** * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ******* (12.3 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GTAGTCCT consensus TTC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:125773107-12577318 68 2.73e-05 TGTGGGAAAT GTAGTTCT GAGAA chr11:134123317-13412339 2 2.73e-05 T GTAGTCCT GTCCCCTTGG chrX:70315582-70315662 47 2.73e-05 GACGGGAGAT GTAGTCCT CAAGAGTGAC chr13:31736477-31736557 70 2.73e-05 GCTGGGATGT GTAGTCCT GGC chr17:7094941-7095021 72 2.73e-05 GCTGGGAAAT GTAGTCCT G chr5:178487308-178487388 64 2.73e-05 GCCGGGAGTG GTAGTTCT CCCGCGGTT chr1:154979431-154979511 71 2.73e-05 ACTGGGAGTT GTAGTCCT TG chr22:41840456-41840536 24 2.73e-05 TCTGGGAATT GTAGTCCT CAAACACCTC chr19:49148188-49148268 73 2.73e-05 CGTGGGAGTT GTAGTTCT chr19:49017202-49017282 55 2.73e-05 TATGGGAGGT GTAGTCCT GGCCTTGAGA chr6:31866312-31866392 34 2.73e-05 TCTGGGAACT GTAGTTCT CTTTGGTTAA chr19:55709057-55709137 73 2.73e-05 GATGGGATTT GTAGTCCT chr19:54480867-54480947 73 2.73e-05 CATGGGAAAT GTAGTCCT chr19:49486857-49486937 72 2.73e-05 TCTGGGAGTT GTAGTTCT C chr19:50339856-50339936 70 5.04e-05 GGCCAGAGAA GTAGTTTT GGA chr2:220577976-220578056 66 5.04e-05 tctgggaaat gtagtctt ttagctg chr18:56806956-56807036 28 5.04e-05 TCTGGGAGTG GTAGTTTT CTTCCTTCAG chr3:69788441-69788521 35 5.04e-05 TCTGGGAGCT GTAGTTTT CGTGGGAGCG chr19:50163172-50163252 62 5.04e-05 GCTGGGAGTT GTAGTTTT acacacacac chr5:178157748-178157828 33 1.10e-04 TCGGGGAAGT GTAGTTCC ATGCGTTTGA chr7:141264317-141264397 53 1.10e-04 tatgggaact gtagttca ggatgagatt chr5:138775182-138775262 43 1.10e-04 GCTGGTCATT GTAGTCCA GTCCATATGA chr15:40986914-40986994 33 1.10e-04 GCCGGGAGAT GTAGTCCC GGGCCGACGC chr16:30939350-30939430 63 1.10e-04 GTTGGGAGAT GTAGTTCA GGAGTTGGGT chr19:37861884-37861964 32 1.10e-04 TCTGGGAGAT GTAGTTCA ACGATGACGG chr5:57878760-57878840 27 1.10e-04 GCCGGGAGTT GTAGTTCA CCGCTCGCCC chr14:81408126-81408206 18 1.10e-04 TCTGGGAGTT GTAGTCCA TCTCGGCCTC chr3:101443649-101443729 70 1.10e-04 TCTGGGAGTT GTAGTTCA CCT chr19:41084535-41084615 27 1.10e-04 AGTGGGAGGT GTAGTTCC CTATCAGATG chrX:106045774-106045854 13 1.10e-04 TGTGGGAAGG GTAGTCCC ATGTTCCAGT chr11:64387359-64387439 58 1.10e-04 GATGGGAGTT GTAGTTCC TAAGCCATGT chr9:15422739-15422819 10 1.60e-04 CCGGGAAAT GTAGTTTC TGATGCCCTg chr20:48732486-48732566 33 1.60e-04 GCTGGTTGTT GTAGTCTA GCGTTGGCGC chr14:24701757-24701837 71 1.60e-04 CCTGGGAGTT GTAGTCTA AC chr6:43215024-43215104 68 1.60e-04 GCTGGGAGTT GTAGTCTC AGCCT chr19:38270214-38270294 40 1.60e-04 TCTGGGAAAT GTAGTTTA AGCCTAAAGC chr13:41837951-41838031 69 1.60e-04 CCTGGGAGTT GTAGTTTA CCTT chr19:48907016-48907096 22 1.60e-04 GCTGGGAGAT GTAGTCTC CTCACTGCCT chr7:57472358-57472438 35 1.60e-04 GCTGGGAGCT GTAGTCTC TTCACCGCTC chr6:157801089-157801169 24 1.60e-04 GCAGGGACTT GTAGTTTC TAAGGCCCCG chr7:63361078-63361158 30 1.60e-04 GCTGGGAGTT GTAGTCTC TTCACTGCTC chr1:205414386-205414466 15 1.60e-04 TCTGGGAACT GTAGTCTA CAAGACCGTG chr2:23598481-23598561 36 1.60e-04 GCTGGGAGAT GTAGTctc actccaaagg chr17:40559667-40559747 70 1.60e-04 GCTGGGACTT GTAGTCTC TAC chr19:20163084-20163164 42 1.60e-04 GCTGGGAGCT GTAGTCTC TTCACGGTTT chr21:15755517-15755597 15 1.93e-04 CCTGGGAAAT GTAGTCCG CTTGCTCTGA chrX:64196372-64196452 24 1.93e-04 CCTGGGAGCT GTAGTCCG GAGCTTCAGG chr19:7616335-7616415 24 1.93e-04 GCTGGGAGAT GTAGTCCG GCGTCCAGAG chr13:30881193-30881273 25 1.93e-04 GCCGGGCTTT GTAGTTCG CCAGTCCGAG chr10:89102584-89102664 73 1.93e-04 GTCGGGAGTC GTAGTCCG chr1:202636493-202636573 49 2.21e-04 cttgggaaat gtagtttg ctgagcagag chr4:185265098-185265178 72 2.21e-04 tctgggaaat gtagtttg c -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:125773107-12577318 2.7e-05 67_[+4]_5 chr11:134123317-13412339 2.7e-05 1_[+4]_71 chrX:70315582-70315662 2.7e-05 46_[+4]_26 chr13:31736477-31736557 2.7e-05 69_[+4]_3 chr17:7094941-7095021 2.7e-05 71_[+4]_1 chr5:178487308-178487388 2.7e-05 63_[+4]_9 chr1:154979431-154979511 2.7e-05 70_[+4]_2 chr22:41840456-41840536 2.7e-05 23_[+4]_49 chr19:49148188-49148268 2.7e-05 72_[+4] chr19:49017202-49017282 2.7e-05 54_[+4]_18 chr6:31866312-31866392 2.7e-05 33_[+4]_39 chr19:55709057-55709137 2.7e-05 72_[+4] chr19:54480867-54480947 2.7e-05 72_[+4] chr19:49486857-49486937 2.7e-05 71_[+4]_1 chr19:50339856-50339936 5e-05 69_[+4]_3 chr2:220577976-220578056 5e-05 65_[+4]_7 chr18:56806956-56807036 5e-05 27_[+4]_45 chr3:69788441-69788521 5e-05 34_[+4]_38 chr19:50163172-50163252 5e-05 61_[+4]_11 chr5:178157748-178157828 0.00011 32_[+4]_40 chr7:141264317-141264397 0.00011 52_[+4]_20 chr5:138775182-138775262 0.00011 42_[+4]_30 chr15:40986914-40986994 0.00011 32_[+4]_40 chr16:30939350-30939430 0.00011 62_[+4]_10 chr19:37861884-37861964 0.00011 31_[+4]_41 chr5:57878760-57878840 0.00011 26_[+4]_46 chr14:81408126-81408206 0.00011 17_[+4]_55 chr3:101443649-101443729 0.00011 69_[+4]_3 chr19:41084535-41084615 0.00011 26_[+4]_46 chrX:106045774-106045854 0.00011 12_[+4]_60 chr11:64387359-64387439 0.00011 57_[+4]_15 chr9:15422739-15422819 0.00016 9_[+4]_63 chr20:48732486-48732566 0.00016 32_[+4]_40 chr14:24701757-24701837 0.00016 70_[+4]_2 chr6:43215024-43215104 0.00016 67_[+4]_5 chr19:38270214-38270294 0.00016 39_[+4]_33 chr13:41837951-41838031 0.00016 68_[+4]_4 chr19:48907016-48907096 0.00016 21_[+4]_51 chr7:57472358-57472438 0.00016 34_[+4]_38 chr6:157801089-157801169 0.00016 23_[+4]_49 chr7:63361078-63361158 0.00016 29_[+4]_43 chr1:205414386-205414466 0.00016 14_[+4]_58 chr2:23598481-23598561 0.00016 35_[+4]_37 chr17:40559667-40559747 0.00016 69_[+4]_3 chr19:20163084-20163164 0.00016 41_[+4]_31 chr21:15755517-15755597 0.00019 14_[+4]_58 chrX:64196372-64196452 0.00019 23_[+4]_49 chr19:7616335-7616415 0.00019 23_[+4]_49 chr13:30881193-30881273 0.00019 24_[+4]_48 chr10:89102584-89102664 0.00019 72_[+4] chr1:202636493-202636573 0.00022 48_[+4]_24 chr4:185265098-185265178 0.00022 71_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTAGTYYH width=8 seqs=52 chr11:125773107-12577318 ( 68) GTAGTTCT 1 chr11:134123317-13412339 ( 2) GTAGTCCT 1 chrX:70315582-70315662 ( 47) GTAGTCCT 1 chr13:31736477-31736557 ( 70) GTAGTCCT 1 chr17:7094941-7095021 ( 72) GTAGTCCT 1 chr5:178487308-178487388 ( 64) GTAGTTCT 1 chr1:154979431-154979511 ( 71) GTAGTCCT 1 chr22:41840456-41840536 ( 24) GTAGTCCT 1 chr19:49148188-49148268 ( 73) GTAGTTCT 1 chr19:49017202-49017282 ( 55) GTAGTCCT 1 chr6:31866312-31866392 ( 34) GTAGTTCT 1 chr19:55709057-55709137 ( 73) GTAGTCCT 1 chr19:54480867-54480947 ( 73) GTAGTCCT 1 chr19:49486857-49486937 ( 72) GTAGTTCT 1 chr19:50339856-50339936 ( 70) GTAGTTTT 1 chr2:220577976-220578056 ( 66) GTAGTCTT 1 chr18:56806956-56807036 ( 28) GTAGTTTT 1 chr3:69788441-69788521 ( 35) GTAGTTTT 1 chr19:50163172-50163252 ( 62) GTAGTTTT 1 chr5:178157748-178157828 ( 33) GTAGTTCC 1 chr7:141264317-141264397 ( 53) GTAGTTCA 1 chr5:138775182-138775262 ( 43) GTAGTCCA 1 chr15:40986914-40986994 ( 33) GTAGTCCC 1 chr16:30939350-30939430 ( 63) GTAGTTCA 1 chr19:37861884-37861964 ( 32) GTAGTTCA 1 chr5:57878760-57878840 ( 27) GTAGTTCA 1 chr14:81408126-81408206 ( 18) GTAGTCCA 1 chr3:101443649-101443729 ( 70) GTAGTTCA 1 chr19:41084535-41084615 ( 27) GTAGTTCC 1 chrX:106045774-106045854 ( 13) GTAGTCCC 1 chr11:64387359-64387439 ( 58) GTAGTTCC 1 chr9:15422739-15422819 ( 10) GTAGTTTC 1 chr20:48732486-48732566 ( 33) GTAGTCTA 1 chr14:24701757-24701837 ( 71) GTAGTCTA 1 chr6:43215024-43215104 ( 68) GTAGTCTC 1 chr19:38270214-38270294 ( 40) GTAGTTTA 1 chr13:41837951-41838031 ( 69) GTAGTTTA 1 chr19:48907016-48907096 ( 22) GTAGTCTC 1 chr7:57472358-57472438 ( 35) GTAGTCTC 1 chr6:157801089-157801169 ( 24) GTAGTTTC 1 chr7:63361078-63361158 ( 30) GTAGTCTC 1 chr1:205414386-205414466 ( 15) GTAGTCTA 1 chr2:23598481-23598561 ( 36) GTAGTCTC 1 chr17:40559667-40559747 ( 70) GTAGTCTC 1 chr19:20163084-20163164 ( 42) GTAGTCTC 1 chr21:15755517-15755597 ( 15) GTAGTCCG 1 chrX:64196372-64196452 ( 24) GTAGTCCG 1 chr19:7616335-7616415 ( 24) GTAGTCCG 1 chr13:30881193-30881273 ( 25) GTAGTTCG 1 chr10:89102584-89102664 ( 73) GTAGTCCG 1 chr1:202636493-202636573 ( 49) GTAGTTTG 1 chr4:185265098-185265178 ( 72) GTAGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 2.6e-023 -1234 -1234 185 -1234 -1234 -1234 -1234 213 216 -1234 -1234 -1234 -1234 -1234 185 -1234 -1234 -1234 -1234 213 -1234 99 -1234 102 -1234 114 -1234 82 4 -1 -104 68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.6e-023 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.596154 0.000000 0.403846 0.230769 0.269231 0.134615 0.365385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTYYH MEME-4 regular expression -------------------------------------------------------------------------------- GTAGT[CT][CT][TCA] -------------------------------------------------------------------------------- Time 14.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCTGGGA MEME-5 width = 8 sites = 19 llr = 172 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::2::::8 pos.-specific C :68::::: probability G :2::aaa2 matrix T a2:a:::: bits 2.2 * * 1.9 * **** 1.7 * **** 1.5 * ***** Relative 1.3 * ****** Entropy 1.1 * ****** (13.0 bits) 0.9 * ****** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTGGGA consensus GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:50339856-50339936 30 1.80e-05 CTGTGTGTGC TCCTGGGA TTGCTGGGAA chr8:101828535-101828615 14 1.80e-05 GTTCAAAGGC TCCTGGGA Ggaacttagt chr1:205744601-205744681 73 1.80e-05 CCGCGAAGcc tcctggga chr19:55815797-55815877 72 1.80e-05 TCCTAGAGCC TCCTGGGA G chrX:697958-698038 19 3.31e-05 TATCAGTGCA TTCTGGGA TTGAGGGCAT chr19:44488221-44488301 14 3.31e-05 GACCTGTGAA TTCTGGGA AGTGGAGTCC chr2:27319243-27319323 30 3.31e-05 CTGCAAGGGA TTCTGGGA AGTGTAGGCT chr6:31866312-31866392 23 3.31e-05 ATTAAAGGCC TTCTGGGA ACTGTAGTTC chr13:31736477-31736557 59 5.14e-05 GCGCCTTGCA TGCTGGGA TGTGTAGTCC chr19:7616335-7616415 44 5.14e-05 GTCCAGAGCA TGCTGGGA GGGAAGCCTT chr7:63767727-63767807 73 5.14e-05 GACTTGCGCA TGCTGGGA chr4:190971025-190971105 23 5.14e-05 GCCTGGTGCA TGCTGGGA TTGCAGTGCT chr11:125773107-12577318 35 6.63e-05 GCCCGAGCCC TCATGGGA GGTGTAGTCC chr19:49968755-49968835 10 6.63e-05 CCCAGAGGC TCATGGGA GCAGTTTAAG chr19:50836848-50836928 52 6.63e-05 GCGAGGGCCT TCATGGGA CTCGTAGTAC chr19:55800672-55800752 67 6.63e-05 CTCCCAAGGA TCATGGGA ATTGGA chr19:49224348-49224428 24 1.01e-04 CCCCAGCAAC TCCTGGGG CGGGGTCCGT chr8:124054097-124054177 69 1.01e-04 CCGCTGGGCC TCCTGGGG CCTG chr19:55816995-55817075 55 1.01e-04 CCTGGCTTCC TCCTGGGG CTCATGGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:50339856-50339936 1.8e-05 29_[+5]_43 chr8:101828535-101828615 1.8e-05 13_[+5]_59 chr1:205744601-205744681 1.8e-05 72_[+5] chr19:55815797-55815877 1.8e-05 71_[+5]_1 chrX:697958-698038 3.3e-05 18_[+5]_54 chr19:44488221-44488301 3.3e-05 13_[+5]_59 chr2:27319243-27319323 3.3e-05 29_[+5]_43 chr6:31866312-31866392 3.3e-05 22_[+5]_50 chr13:31736477-31736557 5.1e-05 58_[+5]_14 chr19:7616335-7616415 5.1e-05 43_[+5]_29 chr7:63767727-63767807 5.1e-05 72_[+5] chr4:190971025-190971105 5.1e-05 22_[+5]_50 chr11:125773107-12577318 6.6e-05 34_[+5]_38 chr19:49968755-49968835 6.6e-05 9_[+5]_63 chr19:50836848-50836928 6.6e-05 51_[+5]_21 chr19:55800672-55800752 6.6e-05 66_[+5]_6 chr19:49224348-49224428 0.0001 23_[+5]_49 chr8:124054097-124054177 0.0001 68_[+5]_4 chr19:55816995-55817075 0.0001 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCTGGGA width=8 seqs=19 chr19:50339856-50339936 ( 30) TCCTGGGA 1 chr8:101828535-101828615 ( 14) TCCTGGGA 1 chr1:205744601-205744681 ( 73) TCCTGGGA 1 chr19:55815797-55815877 ( 72) TCCTGGGA 1 chrX:697958-698038 ( 19) TTCTGGGA 1 chr19:44488221-44488301 ( 14) TTCTGGGA 1 chr2:27319243-27319323 ( 30) TTCTGGGA 1 chr6:31866312-31866392 ( 23) TTCTGGGA 1 chr13:31736477-31736557 ( 59) TGCTGGGA 1 chr19:7616335-7616415 ( 44) TGCTGGGA 1 chr7:63767727-63767807 ( 73) TGCTGGGA 1 chr4:190971025-190971105 ( 23) TGCTGGGA 1 chr11:125773107-12577318 ( 35) TCATGGGA 1 chr19:49968755-49968835 ( 10) TCATGGGA 1 chr19:50836848-50836928 ( 52) TCATGGGA 1 chr19:55800672-55800752 ( 67) TCATGGGA 1 chr19:49224348-49224428 ( 24) TCCTGGGG 1 chr8:124054097-124054177 ( 69) TCCTGGGG 1 chr19:55816995-55817075 ( 55) TCCTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.27554 E= 2.5e+003 -1089 -1089 -1089 213 -1089 109 -39 -12 -9 154 -1089 -1089 -1089 -1089 -1089 213 -1089 -1089 185 -1089 -1089 -1089 185 -1089 -1089 -1089 185 -1089 191 -1089 -81 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.5e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.578947 0.210526 0.210526 0.210526 0.789474 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.842105 0.000000 0.157895 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTGGGA MEME-5 regular expression -------------------------------------------------------------------------------- T[CGT][CA]TGGGA -------------------------------------------------------------------------------- Time 17.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:190971025-190971105 8.12e-03 22_[+5(5.14e-05)]_50 chr19:49362012-49362092 3.18e-03 80 chr19:49310027-49310107 1.87e-04 8_[+2(7.68e-05)]_50_[+5(3.31e-05)]_\ 6 chr19:49416528-49416608 1.15e-04 69_[+1(1.54e-05)]_3 chr19:55831281-55831361 1.50e-05 4_[+2(3.44e-05)]_54_[+1(1.54e-05)]_\ 6 chr19:49486857-49486937 3.82e-06 63_[+1(1.54e-05)]_[+4(2.73e-05)]_1 chr19:54396428-54396508 1.87e-04 6_[+2(4.85e-05)]_54_[+1(4.30e-05)]_\ 4 chr19:49385137-49385217 5.56e-06 2_[+3(9.44e-06)]_62_[+1(3.05e-05)] chr19:54480867-54480947 4.87e-07 4_[+2(7.68e-05)]_52_[+1(5.53e-05)]_\ [+4(2.73e-05)] chr19:55709057-55709137 7.11e-06 1_[+2(7.68e-05)]_63_[+4(2.73e-05)] chr19:54682362-54682442 1.49e-04 7_[+2(7.68e-05)]_54_[+1(3.05e-05)]_\ 3 chr11:74459583-74459663 5.40e-01 80 chr19:46027169-46027249 6.64e-03 4_[+2(4.85e-05)]_68 chr1:20960623-20960703 6.99e-01 80 chr19:49228254-49228334 9.76e-06 5_[+2(3.44e-05)]_52_[+1(1.54e-05)]_\ 7 chr19:54411486-54411566 1.45e-04 [+3(4.25e-05)]_61_[+1(5.53e-05)]_3 chr19:51142563-51142643 2.03e-05 64_[+1(1.54e-05)]_8 chr19:49013931-49014011 1.89e-05 2_[+3(2.11e-05)]_61_[+1(1.54e-05)]_\ 1 chr19:49490330-49490410 1.47e-02 25_[+2(4.85e-05)]_47 chr19:55690506-55690586 3.79e-06 9_[+2(7.68e-05)]_52_[+1(1.54e-05)]_\ 3 chr10:89102584-89102664 9.17e-02 80 chr19:55816995-55817075 8.47e-05 7_[+2(1.70e-05)]_48_[+5(6.63e-05)]_\ 9 chr19:48922680-48922760 1.71e-02 1_[+2(1.70e-05)]_71 chrX:49068881-49068961 7.29e-01 80 chr1:10706560-10706640 6.29e-01 80 chr10:81586496-81586576 1.72e-01 80 chrX:11128216-11128296 2.99e-02 4_[+5(6.63e-05)]_68 chr7:20257086-20257166 1.57e-01 80 chr19:50163172-50163252 5.30e-06 53_[+1(1.54e-05)]_[+4(5.04e-05)]_11 chr19:49248611-49248691 1.49e-04 67_[+1(1.54e-05)]_5 chr17:7118414-7118494 1.19e-04 68_[+1(1.54e-05)]_4 chr3:75690318-75690398 4.24e-06 15_[+1(3.05e-05)]_44_[+3(7.99e-05)]_\ 5 chr6:31866312-31866392 2.25e-05 22_[+5(3.31e-05)]_3_[+4(2.73e-05)]_\ 23_[+5(3.31e-05)]_8 chr16:1625729-1625809 9.17e-02 7_[+2(1.70e-05)]_14_[+2(6.25e-05)]_\ 43 chr7:63767727-63767807 5.76e-02 72_[+5(5.14e-05)] chr14:90620620-90620700 5.09e-01 80 chr9:72435526-72435606 7.46e-06 10_[+2(3.44e-05)]_51_[+5(3.31e-05)]_\ 3 chr19:20163084-20163164 3.12e-04 30_[+5(5.14e-05)]_42 chr5:142784262-142784342 8.26e-01 80 chr2:128643966-128644046 4.53e-01 80 chr6:44101510-44101590 2.32e-04 62_[+1(1.54e-05)]_10 chr19:50651536-50651616 5.61e-03 5_[+3(4.25e-05)]_1_[+2(4.85e-05)]_\ 58 chr2:27319243-27319323 6.30e-04 29_[+5(3.31e-05)]_29_[+1(3.05e-05)]_\ 6 chr12:58287797-58287877 6.04e-01 80 chr4:56365872-56365952 1.27e-02 80 chr16:68482607-68482687 2.15e-04 3_[+5(3.31e-05)]_69 chr6:52929641-52929721 7.39e-01 80 chr19:55677437-55677517 1.28e-03 6_[+3(2.11e-05)]_66 chr19:49017202-49017282 7.46e-04 54_[+4(2.73e-05)]_18 chr10:63661111-63661191 9.42e-01 80 chr11:64376990-64377070 1.18e-03 4_[+2(6.25e-05)]_25_[+2(6.25e-05)]_\ 26_[+2(6.25e-05)]_1 chr11:65635649-65635729 1.12e-03 9_[+2(6.25e-05)]_63 chr17:40559667-40559747 6.62e-08 16_[+3(9.14e-05)]_1_[+2(1.70e-05)]_\ 25_[+5(5.14e-05)]_14 chr11:64387359-64387439 3.75e-05 18_[+1(1.54e-05)]_23_[+1(1.54e-05)]_\ 23 chr6:10147337-10147417 2.82e-03 14_[+2(3.44e-05)]_27_[+2(3.44e-05)]_\ 23 chr19:55815797-55815877 1.56e-03 3_[+3(2.11e-05)]_60_[+5(1.80e-05)]_\ 1 chr13:30881193-30881273 1.98e-01 80 chrX:106045774-106045854 2.35e-06 57_[+3(9.44e-06)]_15 chr16:86143898-86143978 2.52e-02 16_[+5(6.63e-05)]_13_[+5(6.63e-05)]_\ 13_[+5(6.63e-05)]_14 chr19:49148188-49148268 4.12e-06 3_[+2(1.70e-05)]_53_[+1(1.54e-05)]_\ [+4(2.73e-05)] chr14:36295377-36295457 1.76e-03 52_[+3(9.44e-06)]_20 chr17:7358828-7358908 9.80e-05 58_[+1(1.54e-05)]_14 chr2:23598481-23598561 5.38e-06 27_[+1(3.05e-05)]_22_[+1(5.53e-05)]_\ 15 chr19:44488221-44488301 2.74e-03 13_[+5(3.31e-05)]_28_[+1(8.85e-05)]_\ 23 chr19:507896-507976 6.49e-04 56_[+1(1.54e-05)]_16 chr8:124054097-124054177 1.10e-04 1_[+3(7.99e-05)]_1_[+2(1.70e-05)]_\ 62 chrX:697958-698038 4.42e-02 18_[+5(3.31e-05)]_54 chr11:64038435-64038515 2.59e-02 67_[+3(7.99e-05)]_5 chr22:41840456-41840536 8.41e-05 15_[+1(4.30e-05)]_[+4(2.73e-05)]_49 chr20:45368985-45369065 7.73e-02 80 chr11:34607721-34607801 1.77e-01 80 chr12:56132170-56132250 2.05e-01 80 chr3:63953418-63953498 2.38e-01 80 chr4:10172881-10172961 8.74e-01 80 chr1:201645477-201645557 5.57e-02 80 chr19:35696741-35696821 9.97e-01 80 chr19:54382702-54382782 1.47e-03 61_[+2(4.85e-05)]_11 chr19:55708317-55708397 1.24e-03 9_[+3(9.44e-06)]_1_[+2(7.68e-05)]_\ 54 chr19:36249320-36249400 5.23e-01 80 chr19:49404475-49404555 8.58e-03 80 chr1:205414386-205414466 6.97e-06 3_[+5(3.31e-05)]_58_[+3(5.42e-05)]_\ 3 chr7:63386654-63386734 1.19e-04 29_[+3(2.11e-05)]_[+2(1.70e-05)]_35 chr14:23676161-23676241 2.34e-01 80 chr4:74939244-74939324 8.91e-01 80 chr1:147142662-147142742 4.11e-04 54_[+3(9.44e-06)]_18 chr2:136288400-136288480 2.47e-03 4_[+3(9.44e-06)]_68 chr2:86332689-86332769 1.40e-04 2_[+2(1.70e-05)]_52_[+5(3.31e-05)]_\ 10 chr11:46134683-46134763 2.35e-06 2_[+3(5.42e-05)]_1_[+2(1.70e-05)]_\ 61 chr19:41084535-41084615 3.82e-03 80 chr19:49250486-49250566 7.04e-04 2_[+3(2.11e-05)]_70 chr7:63361078-63361158 5.08e-07 21_[+1(1.54e-05)]_43_[+3(2.11e-05)] chr1:154979431-154979511 9.51e-07 18_[+3(2.11e-05)]_36_[+1(1.54e-05)]_\ [+4(2.73e-05)]_2 chr3:97483353-97483433 5.96e-03 14_[+2(7.68e-05)]_58 chr11:65660907-65660987 2.03e-03 6_[+2(8.85e-05)]_25_[+2(6.25e-05)]_\ 33 chr3:15141029-15141109 3.82e-02 80 chr2:120769285-120769365 9.47e-01 80 chr5:178487308-178487388 8.51e-04 63_[+4(2.73e-05)]_9 chr5:138875540-138875620 9.70e-02 80 chr8:134403311-134403391 2.26e-05 6_[+3(3.07e-05)]_39_[+5(3.31e-05)]_\ 19 chr7:62528828-62528908 1.22e-03 38_[+3(7.99e-05)]_1_[+2(1.70e-05)]_\ 25 chr20:52380531-52380611 4.91e-01 80 chr19:48833432-48833512 6.89e-04 8_[+2(1.70e-05)]_53_[+1(5.53e-05)]_\ 3 chr6:106494859-106494939 8.59e-01 80 chr19:49422143-49422223 9.10e-08 [+3(9.44e-06)]_1_[+2(6.25e-05)]_20_\ [+2(3.44e-05)]_24_[+1(1.54e-05)]_3 chr3:156544901-156544981 7.79e-02 80 chr5:150180934-150181014 2.45e-01 80 chr8:82755007-82755087 4.44e-03 18_[+3(2.11e-05)]_1_[+2(4.85e-05)]_\ 45 chr4:10241815-10241895 3.04e-01 80 chr3:69788441-69788521 7.71e-05 23_[+5(3.31e-05)]_3_[+4(5.04e-05)]_\ 38 chr7:111201405-111201485 1.37e-01 80 chr19:48903790-48903870 7.18e-02 80 chr11:66138863-66138943 1.01e-04 18_[+3(2.11e-05)]_41_[+1(4.30e-05)]_\ 5 chr16:31232820-31232900 1.74e-01 80 chr3:101443649-101443729 1.26e-03 61_[+1(1.54e-05)]_11 chr6:158939654-158939734 3.32e-01 80 chr6:157801089-157801169 5.71e-02 80 chr19:49479575-49479655 1.32e-01 26_[+2(4.85e-05)]_46 chr19:49224348-49224428 2.49e-04 4_[+3(9.44e-06)]_68 chr19:56989398-56989478 2.21e-02 48_[+3(4.25e-05)]_24 chr17:7094941-7095021 2.47e-06 60_[+5(5.14e-05)]_3_[+4(2.73e-05)]_\ 1 chr4:185265098-185265178 1.59e-05 60_[+5(3.31e-05)]_12 chr6:158154523-158154603 6.82e-01 80 chr19:7616335-7616415 3.29e-04 15_[+1(3.05e-05)]_20_[+5(5.14e-05)]_\ 29 chr22:50050653-50050733 3.35e-01 80 chr10:3598574-3598654 2.43e-01 7_[+2(4.85e-05)]_65 chrX:64196372-64196452 7.40e-06 15_[+1(7.36e-05)]_46_[+3(2.11e-05)]_\ 3 chr1:202636493-202636573 3.40e-04 40_[+1(5.53e-05)]_32 chr17:55162004-55162084 7.21e-01 80 chr7:57472358-57472438 2.99e-04 23_[+5(5.14e-05)]_49 chr2:39005278-39005358 1.18e-03 7_[+3(2.11e-05)]_65 chr22:30163136-30163216 2.91e-01 80 chr3:61235767-61235847 5.13e-02 46_[+2(3.44e-05)]_26 chr14:106938390-10693847 2.13e-01 23_[+2(6.25e-05)]_49 chr19:49469195-49469275 1.79e-05 8_[+2(1.70e-05)]_53_[+1(3.05e-05)]_\ 3 chr14:81408126-81408206 1.19e-04 9_[+1(1.54e-05)]_63 chr19:49618307-49618387 2.50e-02 80 chr1:114912289-114912369 8.42e-01 80 chr19:48907016-48907096 1.36e-04 13_[+1(3.05e-05)]_59 chr2:217277114-217277194 4.90e-04 63_[+5(5.14e-05)]_9 chr12:84412651-84412731 4.74e-01 80 chr18:56806956-56807036 3.47e-04 16_[+5(3.31e-05)]_3_[+4(5.04e-05)]_\ 45 chr21:43919658-43919738 2.05e-01 45_[+2(6.25e-05)]_14_[+2(8.85e-05)]_\ 5 chr19:50030962-50031042 8.29e-02 80 chr12:1705014-1705094 3.00e-01 80 chr19:55800672-55800752 2.36e-04 37_[+1(4.30e-05)]_24_[+1(4.30e-05)]_\ 3 chr19:54503110-54503190 1.43e-02 46_[+5(5.14e-05)]_26 chr19:50836848-50836928 5.19e-04 51_[+5(6.63e-05)]_21 chrX:80457385-80457465 8.91e-01 80 chr17:38582969-38583049 8.32e-01 80 chr19:48848317-48848397 8.77e-09 8_[+3(2.11e-05)]_1_[+2(1.70e-05)]_\ 42_[+1(1.54e-05)]_5 chr6:37190422-37190502 8.23e-01 80 chr10:76817578-76817658 1.10e-04 14_[+3(4.25e-05)]_58 chr21:15755517-15755597 3.66e-04 6_[+1(5.53e-05)]_66 chr17:34259065-34259145 6.43e-02 56_[+2(3.44e-05)]_16 chr13:41837951-41838031 1.41e-08 26_[+3(9.44e-06)]_26_[+1(1.54e-05)]_\ 12 chr19:38270214-38270294 1.78e-03 31_[+1(5.53e-05)]_41 chr2:220150946-220151026 5.00e-02 80 chr2:70974554-70974634 2.22e-01 1_[+2(6.25e-05)]_12_[+2(6.25e-05)]_\ 12_[+2(6.25e-05)]_31 chr14:82000452-82000532 1.11e-05 16_[+3(2.11e-05)]_1_[+2(4.85e-05)]_\ 47 chr6:43215024-43215104 3.81e-05 59_[+1(1.54e-05)]_13 chr14:24701757-24701837 7.46e-07 15_[+3(3.07e-05)]_39_[+1(1.54e-05)]_\ 10 chr20:2489688-2489768 8.17e-01 80 chrX:149736806-149736886 5.35e-04 19_[+3(9.44e-06)]_41_[+2(1.70e-05)]_\ 4 chr19:50169437-50169517 2.21e-02 26_[+3(9.14e-05)]_46 chr14:24711341-24711421 8.61e-01 80 chrX:106362030-106362110 3.82e-02 25_[+2(4.85e-05)]_47 chr11:60681329-60681409 4.26e-03 26_[+3(3.07e-05)]_46 chr2:12004152-12004232 2.23e-01 45_[+2(7.68e-05)]_27 chr5:57878760-57878840 9.15e-05 70_[+3(7.99e-05)]_2 chr10:104262591-10426267 6.92e-03 80 chr2:217633654-217633734 8.37e-01 80 chr10:38383178-38383258 3.89e-02 37_[+1(5.53e-05)]_35 chr19:19887273-19887353 1.21e-03 42_[+3(2.11e-05)]_1_[+2(1.70e-05)]_\ 21 chr13:31736477-31736557 3.34e-04 58_[+5(5.14e-05)]_3_[+4(2.73e-05)]_\ 3 chr13:52157981-52158061 1.44e-04 13_[+2(3.44e-05)]_59 chr7:68999524-68999604 9.32e-01 80 chr1:205744601-205744681 5.56e-03 72_[+5(1.80e-05)] chr4:6712256-6712336 6.21e-01 80 chr1:113500021-113500101 1.50e-01 80 chr9:40792129-40792209 2.91e-02 44_[+3(5.42e-05)]_1_[+3(5.42e-05)]_\ 19 chr15:64443668-64443748 2.49e-01 80 chr2:191631542-191631622 3.00e-03 51_[+1(7.36e-05)]_21 chr19:45988715-45988795 1.67e-04 7_[+2(1.70e-05)]_53_[+1(5.53e-05)]_\ 4 chr16:31106264-31106344 5.57e-04 37_[+1(1.54e-05)]_35 chrX:70315582-70315662 8.59e-03 46_[+4(2.73e-05)]_26 chr19:37861884-37861964 3.43e-04 23_[+1(3.05e-05)]_49 chr19:14593237-14593317 5.29e-03 27_[+1(8.85e-05)]_45 chr14:59655255-59655335 6.25e-03 40_[+2(3.44e-05)]_32 chr12:104323506-10432358 2.77e-02 80 chr10:92631650-92631730 4.28e-03 12_[+3(5.42e-05)]_1_[+2(1.70e-05)]_\ 51 chr21:10163718-10163798 1.67e-04 42_[+1(4.30e-05)]_30 chr20:4045270-4045350 6.83e-01 80 chr15:58649978-58650058 8.18e-01 80 chr16:30939350-30939430 5.35e-04 54_[+1(3.05e-05)]_18 chr12:861517-861597 3.50e-03 4_[+3(9.44e-06)]_68 chr7:72745740-72745820 7.39e-01 80 chr5:74807675-74807755 1.57e-04 32_[+1(1.54e-05)]_40 chr15:40986914-40986994 6.40e-04 80 chr12:133532884-13353296 5.38e-03 2_[+3(3.07e-05)]_24_[+3(9.14e-05)]_\ 38 chr10:63661315-63661395 6.00e-01 80 chr19:42772874-42772954 5.80e-03 51_[+2(1.70e-05)]_21 chr11:64715039-64715119 4.03e-01 80 chr2:239142992-239143072 1.04e-03 28_[+3(3.07e-05)]_1_[+2(3.44e-05)]_\ 35 chr7:150689946-150690026 2.27e-06 2_[+3(9.44e-06)]_58_[+5(3.31e-05)]_\ 4 chr11:134123317-13412339 4.33e-06 1_[+4(2.73e-05)]_49_[+3(2.11e-05)]_\ 14 chr17:16439099-16439179 1.25e-02 80 chr19:49968755-49968835 2.60e-03 9_[+5(6.63e-05)]_23_[+5(6.63e-05)]_\ 32 chr2:220577976-220578056 3.63e-04 57_[+1(5.53e-05)]_[+4(5.04e-05)]_7 chr6:37016463-37016543 8.28e-01 80 chr5:138775182-138775262 5.02e-02 80 chr19:55629916-55629996 3.61e-03 45_[+5(5.14e-05)]_27 chr14:106857369-10685744 2.68e-01 16_[+2(6.25e-05)]_56 chr5:124060907-124060987 9.83e-01 80 chr7:141264317-141264397 1.20e-05 23_[+2(7.68e-05)]_13_[+1(8.85e-05)]_\ 28 chr19:55607058-55607138 1.55e-04 5_[+2(6.25e-05)]_52_[+1(8.85e-05)]_\ 7 chr19:44145638-44145718 7.70e-02 6_[+2(1.70e-05)]_25_[+2(6.25e-05)]_\ 24_[+2(1.70e-05)]_1 chr9:101172672-101172752 8.23e-07 18_[+3(3.07e-05)]_1_[+2(4.85e-05)]_\ 37_[+1(3.05e-05)] chr6:116989943-116990023 1.48e-05 21_[+2(4.85e-05)]_36_[+1(3.05e-05)]_\ 7 chr6:164034893-164034973 1.45e-01 [+2(8.85e-05)]_30_[+2(8.85e-05)]_11_\ [+2(8.85e-05)]_15 chr3:195853968-195854048 1.91e-01 80 chr14:77787563-77787643 7.43e-02 80 chr20:48732486-48732566 1.86e-04 59_[+1(1.54e-05)]_13 chr19:44331383-44331463 1.40e-03 26_[+3(4.25e-05)]_1_[+2(4.85e-05)]_\ 37 chr18:832203-832283 3.21e-01 80 chr19:44860862-44860942 2.57e-02 80 chr18:9137660-9137740 1.19e-01 80 chr6:6278810-6278890 2.16e-02 24_[+1(3.05e-05)]_25_[+1(3.05e-05)]_\ 15 chr19:36363224-36363304 5.40e-03 11_[+3(3.07e-05)]_1_[+2(8.85e-05)]_\ 52 chr8:101828535-101828615 4.72e-04 13_[+5(1.80e-05)]_38_[+1(5.53e-05)]_\ 13 chr19:48965795-48965875 2.01e-02 8_[+2(1.70e-05)]_64 chr4:109571570-109571650 7.41e-01 80 chr19:12032839-12032919 5.86e-01 80 chr8:22787581-22787661 2.84e-03 80 chr9:15422739-15422819 2.09e-04 67_[+3(9.44e-06)]_5 chr4:18023789-18023869 4.06e-01 80 chr19:28284797-28284877 2.45e-04 45_[+3(2.11e-05)]_[+2(1.70e-05)]_19 chr16:70488316-70488396 9.25e-01 80 chr20:20693542-20693622 2.61e-02 80 chr15:41099664-41099744 5.05e-05 66_[+1(4.30e-05)]_6 chr3:75834789-75834869 2.39e-03 35_[+2(7.68e-05)]_37 chr5:178157748-178157828 3.29e-02 80 chr19:50339856-50339936 1.49e-06 6_[+2(7.68e-05)]_15_[+5(1.80e-05)]_\ 1_[+5(5.14e-05)]_23_[+4(5.04e-05)]_3 chr3:184550002-184550082 3.87e-01 80 chr2:53994736-53994816 2.47e-01 80 chr19:48866437-48866517 2.00e-04 4_[+2(3.44e-05)]_50_[+5(5.14e-05)]_\ 10 chr20:42747450-42747530 2.24e-01 80 chr10:43048328-43048408 1.05e-01 80 chr10:97853312-97853392 6.95e-01 80 chr11:125773107-12577318 1.23e-04 34_[+5(6.63e-05)]_17_[+1(5.53e-05)]_\ [+4(2.73e-05)]_5 chr7:106211528-106211608 3.41e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************