******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ADNP.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:45434429-45434509 1.0000 80 chr11:44399543-44399623 1.0000 80 chr19:14894133-14894213 1.0000 80 chr19:2702966-2703046 1.0000 80 chr2:238872075-238872155 1.0000 80 chr16:50099585-50099665 1.0000 80 chr12:112791377-11279145 1.0000 80 chr1:167218108-167218188 1.0000 80 chr19:4968464-4968544 1.0000 80 chr12:109213894-10921397 1.0000 80 chr4:110652424-110652504 1.0000 80 chr20:61426355-61426435 1.0000 80 chr8:27182114-27182194 1.0000 80 chr22:27990599-27990679 1.0000 80 chr22:41776364-41776444 1.0000 80 chr6:71275747-71275827 1.0000 80 chr7:156659475-156659555 1.0000 80 chr19:49955555-49955635 1.0000 80 chr11:36214614-36214694 1.0000 80 chr16:87809017-87809097 1.0000 80 chr2:217363188-217363268 1.0000 80 chr3:172259127-172259207 1.0000 80 chr19:50178924-50179004 1.0000 80 chr6:6968648-6968728 1.0000 80 chr12:112278705-11227878 1.0000 80 chr8:67574142-67574222 1.0000 80 chr17:73106870-73106950 1.0000 80 chr16:58483336-58483416 1.0000 80 chr12:122308223-12230830 1.0000 80 chr3:13654998-13655078 1.0000 80 chr2:26284412-26284492 1.0000 80 chr12:104998718-10499879 1.0000 80 chr9:126448488-126448568 1.0000 80 chr20:33049226-33049306 1.0000 80 chr11:118933586-11893366 1.0000 80 chr7:100426189-100426269 1.0000 80 chr20:48294426-48294506 1.0000 80 chr16:8233477-8233557 1.0000 80 chr17:30333313-30333393 1.0000 80 chr7:139898775-139898855 1.0000 80 chr1:39298164-39298244 1.0000 80 chr12:98896504-98896584 1.0000 80 chr9:97060760-97060840 1.0000 80 chr19:49382421-49382501 1.0000 80 chr19:51092149-51092229 1.0000 80 chr15:58717068-58717148 1.0000 80 chr12:104962770-10496285 1.0000 80 chr10:104749282-10474936 1.0000 80 chr9:95821518-95821598 1.0000 80 chr19:39695888-39695968 1.0000 80 chr11:63350525-63350605 1.0000 80 chr17:77697534-77697614 1.0000 80 chr19:36294161-36294241 1.0000 80 chr12:110703827-11070390 1.0000 80 chr17:42621677-42621757 1.0000 80 chr12:110536566-11053664 1.0000 80 chr3:156393395-156393475 1.0000 80 chr10:104749491-10474957 1.0000 80 chr6:35362245-35362325 1.0000 80 chr4:110652221-110652301 1.0000 80 chr19:12992843-12992923 1.0000 80 chr1:46624850-46624930 1.0000 80 chr1:31340570-31340650 1.0000 80 chr1:51177410-51177490 1.0000 80 chr2:238872288-238872368 1.0000 80 chr12:108522484-10852256 1.0000 80 chr19:50861469-50861549 1.0000 80 chr3:77239011-77239091 1.0000 80 chr16:4350143-4350223 1.0000 80 chr7:12605661-12605741 1.0000 80 chr8:41410801-41410881 1.0000 80 chr14:81770761-81770841 1.0000 80 chr5:39186979-39187059 1.0000 80 chr20:45829092-45829172 1.0000 80 chr19:921704-921784 1.0000 80 chr1:156226968-156227048 1.0000 80 chr19:40715538-40715618 1.0000 80 chr16:22207668-22207748 1.0000 80 chr7:98670799-98670879 1.0000 80 chr19:1247797-1247877 1.0000 80 chr2:55857914-55857994 1.0000 80 chr1:29370713-29370793 1.0000 80 chr1:32234597-32234677 1.0000 80 chr4:55270320-55270400 1.0000 80 chr15:83754961-83755041 1.0000 80 chr12:112278910-11227899 1.0000 80 chr2:71558466-71558546 1.0000 80 chr7:129844351-129844431 1.0000 80 chr12:110704027-11070410 1.0000 80 chr6:17701415-17701495 1.0000 80 chr1:31542358-31542438 1.0000 80 chr6:139767176-139767256 1.0000 80 chr6:27661455-27661535 1.0000 80 chr2:191398054-191398134 1.0000 80 chr19:4470994-4471074 1.0000 80 chr12:109163048-10916312 1.0000 80 chr17:42768192-42768272 1.0000 80 chr20:17906681-17906761 1.0000 80 chr19:13068418-13068498 1.0000 80 chr19:860404-860484 1.0000 80 chr5:149125272-149125352 1.0000 80 chr12:51789814-51789894 1.0000 80 chr2:113031859-113031939 1.0000 80 chr9:33077179-33077259 1.0000 80 chr12:109248861-10924894 1.0000 80 chr2:70476609-70476689 1.0000 80 chr7:135460828-135460908 1.0000 80 chr2:191299883-191299963 1.0000 80 chr17:42767952-42768032 1.0000 80 chr1:11801709-11801789 1.0000 80 chr2:26620027-26620107 1.0000 80 chr1:27817531-27817611 1.0000 80 chr12:124908374-12490845 1.0000 80 chr11:118781724-11878180 1.0000 80 chr6:7135348-7135428 1.0000 80 chr17:39686899-39686979 1.0000 80 chr9:19380634-19380714 1.0000 80 chr11:59332741-59332821 1.0000 80 chr8:86971002-86971082 1.0000 80 chr2:68363080-68363160 1.0000 80 chr18:3283363-3283443 1.0000 80 chr6:28318222-28318302 1.0000 80 chr12:117557880-11755796 1.0000 80 chr17:74721242-74721322 1.0000 80 chr3:128176334-128176414 1.0000 80 chr16:87809216-87809296 1.0000 80 chr1:28445398-28445478 1.0000 80 chr12:104970114-10497019 1.0000 80 chr1:120279415-120279495 1.0000 80 chr17:58117533-58117613 1.0000 80 chr16:75019536-75019616 1.0000 80 chr15:60709578-60709658 1.0000 80 chr3:15352811-15352891 1.0000 80 chr3:183254294-183254374 1.0000 80 chr12:92798401-92798481 1.0000 80 chr5:134792659-134792739 1.0000 80 chr16:187678-187758 1.0000 80 chr12:54753725-54753805 1.0000 80 chr3:197466883-197466963 1.0000 80 chr12:110493289-11049336 1.0000 80 chr2:12213574-12213654 1.0000 80 chr1:39280996-39281076 1.0000 80 chr6:158450880-158450960 1.0000 80 chr1:156308970-156309050 1.0000 80 chr11:66140130-66140210 1.0000 80 chr19:11671012-11671092 1.0000 80 chr11:117198127-11719820 1.0000 80 chr12:110134498-11013457 1.0000 80 chr16:68767004-68767084 1.0000 80 chr7:2371581-2371661 1.0000 80 chr2:43417142-43417222 1.0000 80 chr12:117038891-11703897 1.0000 80 chr7:106860435-106860515 1.0000 80 chr1:155828690-155828770 1.0000 80 chr11:85841125-85841205 1.0000 80 chr15:55611904-55611984 1.0000 80 chr6:43902490-43902570 1.0000 80 chr18:8913445-8913525 1.0000 80 chr17:8150834-8150914 1.0000 80 chr19:49955756-49955836 1.0000 80 chr1:167727219-167727299 1.0000 80 chr20:48294627-48294707 1.0000 80 chr9:115322341-115322421 1.0000 80 chr2:30457462-30457542 1.0000 80 chr1:35736131-35736211 1.0000 80 chr20:45317281-45317361 1.0000 80 chr5:96037420-96037500 1.0000 80 chr6:27242925-27243005 1.0000 80 chr10:73974903-73974983 1.0000 80 chr7:2664580-2664660 1.0000 80 chr12:122370183-12237026 1.0000 80 chr2:9970493-9970573 1.0000 80 chr3:151961834-151961914 1.0000 80 chr1:153644352-153644432 1.0000 80 chr4:100482491-100482571 1.0000 80 chr7:73937045-73937125 1.0000 80 chr6:158403813-158403893 1.0000 80 chr2:32390258-32390338 1.0000 80 chr17:61510036-61510116 1.0000 80 chr6:35243792-35243872 1.0000 80 chr12:117020425-11702050 1.0000 80 chr19:45931684-45931764 1.0000 80 chr8:67838216-67838296 1.0000 80 chr1:27340094-27340174 1.0000 80 chr1:22378756-22378836 1.0000 80 chr20:52258926-52259006 1.0000 80 chr11:36149268-36149348 1.0000 80 chr2:236930416-236930496 1.0000 80 chr11:36313919-36313999 1.0000 80 chr11:74736757-74736837 1.0000 80 chr3:171149472-171149552 1.0000 80 chr11:59333278-59333358 1.0000 80 chr11:10772087-10772167 1.0000 80 chr2:25022115-25022195 1.0000 80 chr12:122181191-12218127 1.0000 80 chr17:76026350-76026430 1.0000 80 chr1:113436223-113436303 1.0000 80 chr3:47785059-47785139 1.0000 80 chr12:122181404-12218148 1.0000 80 chr16:11659703-11659783 1.0000 80 chr20:30913620-30913700 1.0000 80 chr12:93735339-93735419 1.0000 80 chr6:28676741-28676821 1.0000 80 chr2:12176587-12176667 1.0000 80 chr12:116725953-11672603 1.0000 80 chr1:61755069-61755149 1.0000 80 chr7:100426584-100426664 1.0000 80 chr10:79700158-79700238 1.0000 80 chr9:95821232-95821312 1.0000 80 chr9:130462137-130462217 1.0000 80 chr1:41822567-41822647 1.0000 80 chr12:121021715-12102179 1.0000 80 chr6:27640847-27640927 1.0000 80 chr4:81049323-81049403 1.0000 80 chr9:33076977-33077057 1.0000 80 chr11:36214815-36214895 1.0000 80 chr1:31504235-31504315 1.0000 80 chr16:16215167-16215247 1.0000 80 chr8:56947949-56948029 1.0000 80 chr12:124990714-12499079 1.0000 80 chr19:921909-921989 1.0000 80 chr1:109323668-109323748 1.0000 80 chr17:25794103-25794183 1.0000 80 chr19:4790851-4790931 1.0000 80 chr19:14543464-14543544 1.0000 80 chr19:15955154-15955234 1.0000 80 chr1:12236517-12236597 1.0000 80 chr1:26404146-26404226 1.0000 80 chr17:30676110-30676190 1.0000 80 chr6:26988413-26988493 1.0000 80 chr6:43707001-43707081 1.0000 80 chr9:128046757-128046837 1.0000 80 chr12:48168136-48168216 1.0000 80 chr1:161581736-161581816 1.0000 80 chr1:15771445-15771525 1.0000 80 chr3:57679126-57679206 1.0000 80 chr11:96025627-96025707 1.0000 80 chr9:135820771-135820851 1.0000 80 chr2:122315071-122315151 1.0000 80 chr10:29024603-29024683 1.0000 80 chr1:15775515-15775595 1.0000 80 chr6:2965098-2965178 1.0000 80 chr22:26880233-26880313 1.0000 80 chr20:35501978-35502058 1.0000 80 chr7:77535501-77535581 1.0000 80 chr16:66933051-66933131 1.0000 80 chr12:110536767-11053684 1.0000 80 chr16:81653787-81653867 1.0000 80 chr6:16056837-16056917 1.0000 80 chr19:46173217-46173297 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ADNP/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ADNP.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.247 G 0.233 T 0.255 Background letter frequencies (from file dataset with add-one prior applied): A 0.265 C 0.247 G 0.233 T 0.255 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCAGCCTG MEME-1 width = 8 sites = 135 llr = 935 E-value = 5.6e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :16::::: pos.-specific C 771:7a:3 probability G :21a3::6 matrix T 3:2:::a1 bits 2.1 * * 1.9 * * 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.0 * **** (10.0 bits) 0.8 ** **** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGCCTG consensus T T G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:110536767-11053684 43 1.37e-05 ccattgcact ccagcctg ggcaacaagg chr3:57679126-57679206 50 1.37e-05 gagttcgaga ccagcctg accaacatgg chr6:28676741-28676821 68 1.37e-05 gagttcgaga ccagcctg accaa chr12:122181404-12218148 28 1.37e-05 ccactgcact ccagcctg ggtgacagag chr3:47785059-47785139 46 1.37e-05 gagttcaaga ccagcctg gccaacatgg chr12:122181191-12218127 66 1.37e-05 gagttcgaga ccagcctg gccaata chr1:27340094-27340174 17 1.37e-05 ccactgcacc ccagcctg ggcgacagag chr5:96037420-96037500 57 1.37e-05 tgactgcact ccagcctg ggccacatag chr1:35736131-35736211 31 1.37e-05 gagttcgaga ccagcctg gccaacatgg chr1:156308970-156309050 53 1.37e-05 tcactgcact ccagcctg gcgacagagc chr3:15352811-15352891 61 1.37e-05 gagttcgaga ccagcctg gccaacatgg chr16:75019536-75019616 64 1.37e-05 ccattatact ccagcctg ggtgacaag chr1:28445398-28445478 8 1.37e-05 ttcaaga ccagcctg gctaacatgg chr17:74721242-74721322 51 1.37e-05 gagttcgaga ccagcctg accaacatgg chr9:19380634-19380714 11 1.37e-05 gagttcgaga ccagcctg gccaacatgg chr17:42768192-42768272 46 1.37e-05 ccattgcact ccagcctg ggcaacaaga chr6:17701415-17701495 9 1.37e-05 gttgcact ccagcctg ggcaacaaga chr7:98670799-98670879 2 1.37e-05 a ccagcctg gccaaaatgg chr16:4350143-4350223 25 1.37e-05 gagttcaaga ccagcctg ggcaatatag chr10:104749491-10474957 36 1.37e-05 ccactgcact ccagcctg ggcgacagag chr11:63350525-63350605 45 1.37e-05 cctctgcact ccagcctg ggtgacagag chr9:97060760-97060840 5 1.37e-05 gaga ccagcctg gccaacatgg chr16:87809017-87809097 12 1.37e-05 gagttcaaga ccagcctg cccaatatgg chr19:14894133-14894213 11 1.37e-05 gggatcgaga ccagcctg ggcaacatgg chr19:15955154-15955234 15 2.81e-05 gccaccccac ccagcctc taaattaaaa chr19:12992843-12992923 10 2.81e-05 cgtgatcca ccagcctc ggcccccgaa chr7:77535501-77535581 11 5.51e-05 tccatattgg ccaggctg gtctcaaact chr6:2965098-2965178 14 5.51e-05 acgctgtcgc ccaggctg gaatgcagtt chr9:128046757-128046837 41 5.51e-05 gttatgttgc ccaggctg ttctcgaact chr7:100426584-100426664 67 5.51e-05 cctctatttc ccaggctg gagtgc chr20:30913620-30913700 58 5.51e-05 gccatgttgg ccaggctg ttctcgaact chr2:32390258-32390338 58 5.51e-05 gcgctgtcgc ccaggctg gagtgtagtg chr1:155828690-155828770 3 5.51e-05 gg ccaggctg gtctcgaact chr11:66140130-66140210 30 5.51e-05 catcttttga ccaggctg gtctcgaact chr19:13068418-13068498 4 5.51e-05 cgc ccaggctg gagggtaacg chr7:129844351-129844431 38 5.51e-05 aacattttgg ccaggctg gtctcgaact chr20:45829092-45829172 61 5.51e-05 accatgttgg ccaggctg gtctcgaact chr19:36294161-36294241 37 5.51e-05 actctgttgc ccaggctg gaatgcagtg chr7:139898775-139898855 26 5.51e-05 accatgttgg ccaggctg ttctcgaact chr2:26284412-26284492 55 5.51e-05 gttaggtttc ccaggctg gtctcgaact chr7:156659475-156659555 30 5.51e-05 accatcttgg ccaggctg gtctggaact chr6:71275747-71275827 28 5.51e-05 agagtgttgg ccaggctg gtctcgaact chr22:41776364-41776444 3 5.51e-05 gg ccaggctg gtctcgaact chr2:238872075-238872155 6 5.51e-05 gtcac ccaggctg gattgcaatg chr19:49955756-49955836 1 6.82e-05 . cctgcctg tagtcccagc chr6:27640847-27640927 39 1.24e-04 tgcagtggtc caagcctg taatcctagc chr3:151961834-151961914 10 1.24e-04 ctgcccgct tcagcctc ccaaagtgct chr7:2664580-2664660 27 1.24e-04 tcctcctgcc tcagcctc tcaagtagct chr19:11671012-11671092 60 1.24e-04 tcctcctgcc tcagcctc ttaagtagct chr19:40715538-40715618 34 1.24e-04 tccacccacc tcagcctc acaaagtgct chr19:50861469-50861549 20 1.24e-04 ttcgcctgcc tcagcctc ccgagtagct chr19:49382421-49382501 43 1.24e-04 ttctcctgga tcagcctc ccaagaagct chr16:58483336-58483416 4 1.24e-04 gat ccaggctc gagtctttgc chr12:109213894-10921397 10 1.24e-04 cctctcacc tcagcctc ccaaagtgct chr11:10772087-10772167 65 1.50e-04 accatgttgg tcaggctg gtctcgaa chr17:8150834-8150914 1 1.50e-04 . tcaggctg gtctcgaact chr20:48294426-48294506 66 1.50e-04 accatgttgg tcaggctg gtctcga chr17:30676110-30676190 19 1.64e-04 aagtgatccg cctgcctc ggccttggcc chr6:28318222-28318302 23 1.64e-04 tggttcaaat cctgcctc tgccacttac chr1:32234597-32234677 21 1.64e-04 gatctggatt cctgcctc tgtcccctca chr11:118933586-11893366 51 1.90e-04 cctcaggtga tctgcctg cttcggcctc chr18:8913445-8913525 39 2.19e-04 aagagatcct ccagcctt ggtctcccca chr2:238872288-238872368 27 2.19e-04 gccaccgtgc ccagcctt ctttgacata chr16:66933051-66933131 16 2.44e-04 atgaagaaac tgagcctg ggcatgtaaa chr20:45317281-45317361 25 2.44e-04 gtgagaaaac cgaggctg agaggctaaa chr11:118781724-11878180 64 2.44e-04 CGAAGAAAGT TGAGCCTG GTAGTCACA chr9:135820771-135820851 28 2.72e-04 ttaagtcctc caagcctc agtttcttcc chr2:25022115-25022195 68 2.72e-04 GGGCTTCTCT CCGGCCTG TGGTA chr1:51177410-51177490 21 2.72e-04 gccaccacac ccggccTG TTCTTTTTTA chr8:67838216-67838296 38 3.41e-04 tgtggtgacg cgtgcctg tagtcccagc chr12:110493289-11049336 12 3.41e-04 cgtgagtcac cgtgcctg gcAGAGACAG chr11:59332741-59332821 57 3.41e-04 ttcagtggct cgtgcctg taatcccaac chr19:921704-921784 24 3.41e-04 ctcgtgatcg cccgcctc ggcctcccaa chr3:172259127-172259207 27 3.41e-04 aagtaacccg cccgcctc agccttccaa chr2:217363188-217363268 26 3.41e-04 cctgacccac cccgcctc ccaaagtgtt chr9:33076977-33077057 39 4.08e-04 cgtagtggcg catgcctg taatccctac chr12:117020425-11702050 9 4.08e-04 CCTCccac catgcctg gcttattcta chr1:27817531-27817611 22 4.08e-04 cgtggtggcg catgcctg taatcccagc chr6:35362245-35362325 38 4.08e-04 catgatgact catgcctg taatctcagc chr10:104749282-10474936 13 4.08e-04 catggtgact catgcctg taatcccagc chr12:122308223-12230830 61 4.08e-04 tgtggtggcg catgcctg taatcccagc chr2:122315071-122315151 57 4.36e-04 ccactgcact ccagccta ggcgacagag chr15:60709578-60709658 24 4.36e-04 gagttcaaga ccagccta agtaacatac chr1:31542358-31542438 38 4.36e-04 gccaccacgc ccagccTA TCTTTACTTT chr1:156226968-156227048 44 4.36e-04 gccacagagc ccagccta ctgtttctta chr7:73937045-73937125 45 4.92e-04 tcagtttctt tgagcctc agttttccta chr12:110134498-11013457 29 4.92e-04 ttaatctctc tgagcctc agtttcctca chr3:128176334-128176414 12 4.92e-04 tctcgccctc tgagcctc agtttctgca chr12:117557880-11755796 3 4.92e-04 ac tgagcctc agtttcttca chr1:11801709-11801789 32 4.92e-04 tacttccttc tgagcctc agttttctca chr19:50178924-50179004 13 4.92e-04 tccgcccacc tcagcctt ccaaaatgct chr11:36214815-36214895 11 6.26e-04 TTATTACTTT CCTGCCTT TTCCTTTCCA chr6:35243792-35243872 47 6.26e-04 actatacctc taagcctc agttgcctca chr10:73974903-73974983 56 6.26e-04 gagttcgaga ccagccag gccaacatga chr2:30457462-30457542 45 6.26e-04 ctaatgccag taagcctc agtttcttca chr6:139767176-139767256 4 6.26e-04 tct cctgcctt agcctcccaa chr2:71558466-71558546 39 6.26e-04 accctgttgg ccgggctg gtctcgaact chr16:22207668-22207748 53 6.26e-04 ctcgggtgcc ccagccag CCGGCATTCC chr11:59333278-59333358 5 7.05e-04 tccg tccgcctc gacttcccaa chr19:45931684-45931764 18 7.05e-04 TTCGAATCTC CCCGGCTC CCAGAGTTGC chr2:43417142-43417222 51 7.05e-04 cgtggtggct cacgcctg tgggagcact chr2:70476609-70476689 26 7.05e-04 ggcagtggct cacgcctg ttattccagc chr12:110704027-11070410 73 7.05e-04 TACTTTTTTC TGTGCCTG chr19:39695888-39695968 33 7.05e-04 cgcggtgact cacgcctg taatcacaat chr12:98896504-98896584 11 7.05e-04 cgcggtggct cacgcctg taaatcccag chr20:33049226-33049306 25 7.05e-04 cgcagtggct cacgcctg taattccagc chr1:45434429-45434509 10 7.05e-04 atggtggcg tgtgcctg taatcccagc chr2:191299883-191299963 59 7.32e-04 ttaaacctgc catgcctc attcttctca chr2:12213574-12213654 37 7.88e-04 acctaagaag tctggctc cagagtcagt chr4:55270320-55270400 38 7.88e-04 AAAGACATat tctggctc caccacatac chr16:16215167-16215247 35 8.60e-04 cctggccGAg caagcctt gttgttccca chr19:4470994-4471074 63 8.60e-04 gctctgtcac ccagtctg gagtgcagtg chr12:112791377-11279145 57 8.60e-04 gagttcgata ccagtctg gccaatatgg chr1:109323668-109323748 27 9.29e-04 CTGAGTATTG TCAGGCTT GTTACTCTTA chr12:124990714-12499079 48 9.29e-04 atcagaaaac tgaggctc ggaaaggtga chr12:122370183-12237026 45 9.29e-04 aagaagaaac tgaggctc agagtgtttt chr1:31340570-31340650 36 9.29e-04 ctgtgcagac tgaggctc caaggagtca chr6:27661455-27661535 70 1.01e-03 tccgcccgtc tcggcctc cca chr3:156393395-156393475 62 1.01e-03 TCACTCGGAC CCGGGCTC GGCGCCGGGG chr12:110703827-11070390 9 1.01e-03 cacccacc tcggcctc ccaaagtgct chr9:95821518-95821598 5 1.01e-03 TCTC TGCGCCTG AGGGAGGTGT chr6:16056837-16056917 27 1.13e-03 atgtaatctc tgtgcctc agtttgctca chr22:26880233-26880313 65 1.13e-03 ttataatctc tgtgcctc agttttct chr1:161581736-161581816 22 1.13e-03 gattcgaacc cacgcctc cagcggaggg chr17:76026350-76026430 39 1.13e-03 tgccaccaca cctggctt gtgtgtgtgc chr12:51789814-51789894 29 1.13e-03 cccatttctg tgtgcctc aatttcctca chr1:39298164-39298244 39 1.13e-03 gcaggttctc tgtgcctc agttttctca chr6:158403813-158403893 72 1.20e-03 CTGACTTTTA TGTGGCTG T chr4:110652221-110652301 23 1.20e-03 cgcggtggtt tacgcctg taatcccagc chr2:68363080-68363160 68 1.38e-03 ggtttcaagt ccagactg ggcaa chr2:113031859-113031939 3 1.38e-03 gc ccggccTT TATTTTCAAT chr19:51092149-51092229 15 1.57e-03 tcaagaccat cctggcta acatggtgaa chr19:49955555-49955635 14 1.78e-03 CAGATCTAGA CCCGCCAG GTCTAGATCT chr9:95821232-95821312 62 1.90e-03 GGAGCCGAAG CCTGGCAG CGAGCAGTTC chr11:117198127-11719820 12 1.90e-03 CCTTCTCTGT CCTGGCAG AAATCCTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:110536767-11053684 1.4e-05 42_[+1]_30 chr3:57679126-57679206 1.4e-05 49_[+1]_23 chr6:28676741-28676821 1.4e-05 67_[+1]_5 chr12:122181404-12218148 1.4e-05 27_[+1]_45 chr3:47785059-47785139 1.4e-05 45_[+1]_27 chr12:122181191-12218127 1.4e-05 65_[+1]_7 chr1:27340094-27340174 1.4e-05 16_[+1]_56 chr5:96037420-96037500 1.4e-05 56_[+1]_16 chr1:35736131-35736211 1.4e-05 30_[+1]_42 chr1:156308970-156309050 1.4e-05 52_[+1]_20 chr3:15352811-15352891 1.4e-05 60_[+1]_12 chr16:75019536-75019616 1.4e-05 63_[+1]_9 chr1:28445398-28445478 1.4e-05 7_[+1]_65 chr17:74721242-74721322 1.4e-05 50_[+1]_22 chr9:19380634-19380714 1.4e-05 10_[+1]_62 chr17:42768192-42768272 1.4e-05 45_[+1]_27 chr6:17701415-17701495 1.4e-05 8_[+1]_64 chr7:98670799-98670879 1.4e-05 1_[+1]_71 chr16:4350143-4350223 1.4e-05 24_[+1]_48 chr10:104749491-10474957 1.4e-05 35_[+1]_37 chr11:63350525-63350605 1.4e-05 44_[+1]_28 chr9:97060760-97060840 1.4e-05 4_[+1]_68 chr16:87809017-87809097 1.4e-05 11_[+1]_61 chr19:14894133-14894213 1.4e-05 10_[+1]_62 chr19:15955154-15955234 2.8e-05 14_[+1]_58 chr19:12992843-12992923 2.8e-05 9_[+1]_63 chr7:77535501-77535581 5.5e-05 10_[+1]_62 chr6:2965098-2965178 5.5e-05 13_[+1]_59 chr9:128046757-128046837 5.5e-05 40_[+1]_32 chr7:100426584-100426664 5.5e-05 66_[+1]_6 chr20:30913620-30913700 5.5e-05 57_[+1]_15 chr2:32390258-32390338 5.5e-05 57_[+1]_15 chr1:155828690-155828770 5.5e-05 2_[+1]_70 chr11:66140130-66140210 5.5e-05 29_[+1]_43 chr19:13068418-13068498 5.5e-05 3_[+1]_69 chr7:129844351-129844431 5.5e-05 37_[+1]_35 chr20:45829092-45829172 5.5e-05 60_[+1]_12 chr19:36294161-36294241 5.5e-05 36_[+1]_36 chr7:139898775-139898855 5.5e-05 25_[+1]_47 chr2:26284412-26284492 5.5e-05 54_[+1]_18 chr7:156659475-156659555 5.5e-05 29_[+1]_43 chr6:71275747-71275827 5.5e-05 27_[+1]_45 chr22:41776364-41776444 5.5e-05 2_[+1]_70 chr2:238872075-238872155 5.5e-05 5_[+1]_67 chr19:49955756-49955836 6.8e-05 [+1]_72 chr6:27640847-27640927 0.00012 38_[+1]_34 chr3:151961834-151961914 0.00012 9_[+1]_63 chr7:2664580-2664660 0.00012 26_[+1]_46 chr19:11671012-11671092 0.00012 59_[+1]_13 chr19:40715538-40715618 0.00012 33_[+1]_39 chr19:50861469-50861549 0.00012 19_[+1]_53 chr19:49382421-49382501 0.00012 42_[+1]_30 chr16:58483336-58483416 0.00012 3_[+1]_69 chr12:109213894-10921397 0.00012 9_[+1]_63 chr11:10772087-10772167 0.00015 64_[+1]_8 chr17:8150834-8150914 0.00015 [+1]_72 chr20:48294426-48294506 0.00015 65_[+1]_7 chr17:30676110-30676190 0.00016 18_[+1]_54 chr6:28318222-28318302 0.00016 22_[+1]_50 chr1:32234597-32234677 0.00016 20_[+1]_52 chr11:118933586-11893366 0.00019 50_[+1]_22 chr18:8913445-8913525 0.00022 38_[+1]_34 chr2:238872288-238872368 0.00022 26_[+1]_46 chr16:66933051-66933131 0.00024 15_[+1]_57 chr20:45317281-45317361 0.00024 24_[+1]_48 chr11:118781724-11878180 0.00024 63_[+1]_9 chr9:135820771-135820851 0.00027 27_[+1]_45 chr2:25022115-25022195 0.00027 67_[+1]_5 chr1:51177410-51177490 0.00027 20_[+1]_52 chr8:67838216-67838296 0.00034 37_[+1]_35 chr12:110493289-11049336 0.00034 11_[+1]_61 chr11:59332741-59332821 0.00034 56_[+1]_16 chr19:921704-921784 0.00034 23_[+1]_49 chr3:172259127-172259207 0.00034 26_[+1]_46 chr2:217363188-217363268 0.00034 25_[+1]_47 chr9:33076977-33077057 0.00041 38_[+1]_34 chr12:117020425-11702050 0.00041 8_[+1]_64 chr1:27817531-27817611 0.00041 21_[+1]_51 chr6:35362245-35362325 0.00041 37_[+1]_35 chr10:104749282-10474936 0.00041 12_[+1]_60 chr12:122308223-12230830 0.00041 60_[+1]_12 chr2:122315071-122315151 0.00044 56_[+1]_16 chr15:60709578-60709658 0.00044 23_[+1]_49 chr1:31542358-31542438 0.00044 37_[+1]_35 chr1:156226968-156227048 0.00044 43_[+1]_29 chr7:73937045-73937125 0.00049 44_[+1]_28 chr12:110134498-11013457 0.00049 28_[+1]_44 chr3:128176334-128176414 0.00049 11_[+1]_61 chr12:117557880-11755796 0.00049 2_[+1]_70 chr1:11801709-11801789 0.00049 31_[+1]_41 chr19:50178924-50179004 0.00049 12_[+1]_60 chr11:36214815-36214895 0.00063 10_[+1]_62 chr6:35243792-35243872 0.00063 46_[+1]_26 chr10:73974903-73974983 0.00063 55_[+1]_17 chr2:30457462-30457542 0.00063 44_[+1]_28 chr6:139767176-139767256 0.00063 3_[+1]_69 chr2:71558466-71558546 0.00063 38_[+1]_34 chr16:22207668-22207748 0.00063 52_[+1]_20 chr11:59333278-59333358 0.0007 4_[+1]_68 chr19:45931684-45931764 0.0007 17_[+1]_55 chr2:43417142-43417222 0.0007 50_[+1]_22 chr2:70476609-70476689 0.0007 25_[+1]_47 chr12:110704027-11070410 0.0007 72_[+1] chr19:39695888-39695968 0.0007 32_[+1]_40 chr12:98896504-98896584 0.0007 10_[+1]_62 chr20:33049226-33049306 0.0007 24_[+1]_48 chr1:45434429-45434509 0.0007 9_[+1]_63 chr2:191299883-191299963 0.00073 58_[+1]_14 chr2:12213574-12213654 0.00079 36_[+1]_36 chr4:55270320-55270400 0.00079 37_[+1]_35 chr16:16215167-16215247 0.00086 34_[+1]_38 chr19:4470994-4471074 0.00086 62_[+1]_10 chr12:112791377-11279145 0.00086 56_[+1]_16 chr1:109323668-109323748 0.00093 26_[+1]_46 chr12:124990714-12499079 0.00093 47_[+1]_25 chr12:122370183-12237026 0.00093 44_[+1]_28 chr1:31340570-31340650 0.00093 35_[+1]_37 chr6:27661455-27661535 0.001 69_[+1]_3 chr3:156393395-156393475 0.001 61_[+1]_11 chr12:110703827-11070390 0.001 8_[+1]_64 chr9:95821518-95821598 0.001 4_[+1]_68 chr6:16056837-16056917 0.0011 26_[+1]_46 chr22:26880233-26880313 0.0011 64_[+1]_8 chr1:161581736-161581816 0.0011 21_[+1]_51 chr17:76026350-76026430 0.0011 38_[+1]_34 chr12:51789814-51789894 0.0011 28_[+1]_44 chr1:39298164-39298244 0.0011 38_[+1]_34 chr6:158403813-158403893 0.0012 71_[+1]_1 chr4:110652221-110652301 0.0012 22_[+1]_50 chr2:68363080-68363160 0.0014 67_[+1]_5 chr2:113031859-113031939 0.0014 2_[+1]_70 chr19:51092149-51092229 0.0016 14_[+1]_58 chr19:49955555-49955635 0.0018 13_[+1]_59 chr9:95821232-95821312 0.0019 61_[+1]_11 chr11:117198127-11719820 0.0019 11_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGCCTG width=8 seqs=135 chr12:110536767-11053684 ( 43) CCAGCCTG 1 chr3:57679126-57679206 ( 50) CCAGCCTG 1 chr6:28676741-28676821 ( 68) CCAGCCTG 1 chr12:122181404-12218148 ( 28) CCAGCCTG 1 chr3:47785059-47785139 ( 46) CCAGCCTG 1 chr12:122181191-12218127 ( 66) CCAGCCTG 1 chr1:27340094-27340174 ( 17) CCAGCCTG 1 chr5:96037420-96037500 ( 57) CCAGCCTG 1 chr1:35736131-35736211 ( 31) CCAGCCTG 1 chr1:156308970-156309050 ( 53) CCAGCCTG 1 chr3:15352811-15352891 ( 61) CCAGCCTG 1 chr16:75019536-75019616 ( 64) CCAGCCTG 1 chr1:28445398-28445478 ( 8) CCAGCCTG 1 chr17:74721242-74721322 ( 51) CCAGCCTG 1 chr9:19380634-19380714 ( 11) CCAGCCTG 1 chr17:42768192-42768272 ( 46) CCAGCCTG 1 chr6:17701415-17701495 ( 9) CCAGCCTG 1 chr7:98670799-98670879 ( 2) CCAGCCTG 1 chr16:4350143-4350223 ( 25) CCAGCCTG 1 chr10:104749491-10474957 ( 36) CCAGCCTG 1 chr11:63350525-63350605 ( 45) CCAGCCTG 1 chr9:97060760-97060840 ( 5) CCAGCCTG 1 chr16:87809017-87809097 ( 12) CCAGCCTG 1 chr19:14894133-14894213 ( 11) CCAGCCTG 1 chr19:15955154-15955234 ( 15) CCAGCCTC 1 chr19:12992843-12992923 ( 10) CCAGCCTC 1 chr7:77535501-77535581 ( 11) CCAGGCTG 1 chr6:2965098-2965178 ( 14) CCAGGCTG 1 chr9:128046757-128046837 ( 41) CCAGGCTG 1 chr7:100426584-100426664 ( 67) CCAGGCTG 1 chr20:30913620-30913700 ( 58) CCAGGCTG 1 chr2:32390258-32390338 ( 58) CCAGGCTG 1 chr1:155828690-155828770 ( 3) CCAGGCTG 1 chr11:66140130-66140210 ( 30) CCAGGCTG 1 chr19:13068418-13068498 ( 4) CCAGGCTG 1 chr7:129844351-129844431 ( 38) CCAGGCTG 1 chr20:45829092-45829172 ( 61) CCAGGCTG 1 chr19:36294161-36294241 ( 37) CCAGGCTG 1 chr7:139898775-139898855 ( 26) CCAGGCTG 1 chr2:26284412-26284492 ( 55) CCAGGCTG 1 chr7:156659475-156659555 ( 30) CCAGGCTG 1 chr6:71275747-71275827 ( 28) CCAGGCTG 1 chr22:41776364-41776444 ( 3) CCAGGCTG 1 chr2:238872075-238872155 ( 6) CCAGGCTG 1 chr19:49955756-49955836 ( 1) CCTGCCTG 1 chr6:27640847-27640927 ( 39) CAAGCCTG 1 chr3:151961834-151961914 ( 10) TCAGCCTC 1 chr7:2664580-2664660 ( 27) TCAGCCTC 1 chr19:11671012-11671092 ( 60) TCAGCCTC 1 chr19:40715538-40715618 ( 34) TCAGCCTC 1 chr19:50861469-50861549 ( 20) TCAGCCTC 1 chr19:49382421-49382501 ( 43) TCAGCCTC 1 chr16:58483336-58483416 ( 4) CCAGGCTC 1 chr12:109213894-10921397 ( 10) TCAGCCTC 1 chr11:10772087-10772167 ( 65) TCAGGCTG 1 chr17:8150834-8150914 ( 1) TCAGGCTG 1 chr20:48294426-48294506 ( 66) TCAGGCTG 1 chr17:30676110-30676190 ( 19) CCTGCCTC 1 chr6:28318222-28318302 ( 23) CCTGCCTC 1 chr1:32234597-32234677 ( 21) CCTGCCTC 1 chr11:118933586-11893366 ( 51) TCTGCCTG 1 chr18:8913445-8913525 ( 39) CCAGCCTT 1 chr2:238872288-238872368 ( 27) CCAGCCTT 1 chr16:66933051-66933131 ( 16) TGAGCCTG 1 chr20:45317281-45317361 ( 25) CGAGGCTG 1 chr11:118781724-11878180 ( 64) TGAGCCTG 1 chr9:135820771-135820851 ( 28) CAAGCCTC 1 chr2:25022115-25022195 ( 68) CCGGCCTG 1 chr1:51177410-51177490 ( 21) CCGGCCTG 1 chr8:67838216-67838296 ( 38) CGTGCCTG 1 chr12:110493289-11049336 ( 12) CGTGCCTG 1 chr11:59332741-59332821 ( 57) CGTGCCTG 1 chr19:921704-921784 ( 24) CCCGCCTC 1 chr3:172259127-172259207 ( 27) CCCGCCTC 1 chr2:217363188-217363268 ( 26) CCCGCCTC 1 chr9:33076977-33077057 ( 39) CATGCCTG 1 chr12:117020425-11702050 ( 9) CATGCCTG 1 chr1:27817531-27817611 ( 22) CATGCCTG 1 chr6:35362245-35362325 ( 38) CATGCCTG 1 chr10:104749282-10474936 ( 13) CATGCCTG 1 chr12:122308223-12230830 ( 61) CATGCCTG 1 chr2:122315071-122315151 ( 57) CCAGCCTA 1 chr15:60709578-60709658 ( 24) CCAGCCTA 1 chr1:31542358-31542438 ( 38) CCAGCCTA 1 chr1:156226968-156227048 ( 44) CCAGCCTA 1 chr7:73937045-73937125 ( 45) TGAGCCTC 1 chr12:110134498-11013457 ( 29) TGAGCCTC 1 chr3:128176334-128176414 ( 12) TGAGCCTC 1 chr12:117557880-11755796 ( 3) TGAGCCTC 1 chr1:11801709-11801789 ( 32) TGAGCCTC 1 chr19:50178924-50179004 ( 13) TCAGCCTT 1 chr11:36214815-36214895 ( 11) CCTGCCTT 1 chr6:35243792-35243872 ( 47) TAAGCCTC 1 chr10:73974903-73974983 ( 56) CCAGCCAG 1 chr2:30457462-30457542 ( 45) TAAGCCTC 1 chr6:139767176-139767256 ( 4) CCTGCCTT 1 chr2:71558466-71558546 ( 39) CCGGGCTG 1 chr16:22207668-22207748 ( 53) CCAGCCAG 1 chr11:59333278-59333358 ( 5) TCCGCCTC 1 chr19:45931684-45931764 ( 18) CCCGGCTC 1 chr2:43417142-43417222 ( 51) CACGCCTG 1 chr2:70476609-70476689 ( 26) CACGCCTG 1 chr12:110704027-11070410 ( 73) TGTGCCTG 1 chr19:39695888-39695968 ( 33) CACGCCTG 1 chr12:98896504-98896584 ( 11) CACGCCTG 1 chr20:33049226-33049306 ( 25) CACGCCTG 1 chr1:45434429-45434509 ( 10) TGTGCCTG 1 chr2:191299883-191299963 ( 59) CATGCCTC 1 chr2:12213574-12213654 ( 37) TCTGGCTC 1 chr4:55270320-55270400 ( 38) TCTGGCTC 1 chr16:16215167-16215247 ( 35) CAAGCCTT 1 chr19:4470994-4471074 ( 63) CCAGTCTG 1 chr12:112791377-11279145 ( 57) CCAGTCTG 1 chr1:109323668-109323748 ( 27) TCAGGCTT 1 chr12:124990714-12499079 ( 48) TGAGGCTC 1 chr12:122370183-12237026 ( 45) TGAGGCTC 1 chr1:31340570-31340650 ( 36) TGAGGCTC 1 chr6:27661455-27661535 ( 70) TCGGCCTC 1 chr3:156393395-156393475 ( 62) CCGGGCTC 1 chr12:110703827-11070390 ( 9) TCGGCCTC 1 chr9:95821518-95821598 ( 5) TGCGCCTG 1 chr6:16056837-16056917 ( 27) TGTGCCTC 1 chr22:26880233-26880313 ( 65) TGTGCCTC 1 chr1:161581736-161581816 ( 22) CACGCCTC 1 chr17:76026350-76026430 ( 39) CCTGGCTT 1 chr12:51789814-51789894 ( 29) TGTGCCTC 1 chr1:39298164-39298244 ( 39) TGTGCCTC 1 chr6:158403813-158403893 ( 72) TGTGGCTG 1 chr4:110652221-110652301 ( 23) TACGCCTG 1 chr2:68363080-68363160 ( 68) CCAGACTG 1 chr2:113031859-113031939 ( 3) CCGGCCTT 1 chr19:51092149-51092229 ( 15) CCTGGCTA 1 chr19:49955555-49955635 ( 14) CCCGCCAG 1 chr9:95821232-95821312 ( 62) CCTGGCAG 1 chr11:117198127-11719820 ( 12) CCTGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.86032 E= 5.6e-058 -1372 152 -1372 18 -91 149 -52 -1372 123 -125 -217 -20 -1372 -1372 210 -1372 -516 151 23 -410 -1372 202 -1372 -1372 -284 -1372 -1372 192 -284 26 136 -193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 135 E= 5.6e-058 0.000000 0.711111 0.000000 0.288889 0.140741 0.696296 0.162963 0.000000 0.622222 0.103704 0.051852 0.222222 0.000000 0.000000 1.000000 0.000000 0.007407 0.703704 0.274074 0.014815 0.000000 1.000000 0.000000 0.000000 0.037037 0.000000 0.000000 0.962963 0.037037 0.296296 0.600000 0.066667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-1 regular expression -------------------------------------------------------------------------------- [CT]C[AT]G[CG]CT[GC] -------------------------------------------------------------------------------- Time 4.97 secs. ******************************************************************************** ******************************************************************************** MOTIF ARRCTGRG MEME-2 width = 8 sites = 111 llr = 780 E-value = 3.0e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 95621:7: pos.-specific C :::71::: probability G :54:1a3a matrix T 1:::7::: bits 2.1 * * 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * * Entropy 1.0 *** *** (10.1 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACTGAG consensus GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:15775515-15775595 44 3.17e-05 acagatgaga aaactgag gccagacagg chr11:96025627-96025707 18 3.17e-05 acagatgatg aaactgag gccaagaagt chr12:48168136-48168216 61 3.17e-05 acagataagg aaactgag gcctgaagtt chr1:26404146-26404226 32 3.17e-05 acagatgaga aaactgag tcacacagag chr1:12236517-12236597 42 3.17e-05 acagatgaaa agactgag gtctatgaac chr17:25794103-25794183 22 3.17e-05 acagatgaag aaactgag gcacagaggg chr16:16215167-16215247 67 3.17e-05 acagataagg aaactgag gcttag chr1:41822567-41822647 10 3.17e-05 cagatgagg aaactgag acttagaaaa chr1:61755069-61755149 26 3.17e-05 acagattagg aaactgag acacaaagaa chr2:12176587-12176667 47 3.17e-05 acagatgaga aaactgag actcacagca chr12:93735339-93735419 49 3.17e-05 atagatgagg aaactgag ctccagggag chr3:171149472-171149552 55 3.17e-05 acagatagga aaactgag tcacagagaa chr6:158403813-158403893 12 3.17e-05 gcagatgagc aaactgag gcctaaagag chr11:85841125-85841205 22 3.17e-05 acaggtgagg aaactgag acccacagCA chr6:158450880-158450960 15 3.17e-05 acaggtagag agactgag gcacgaatag chr1:120279415-120279495 39 3.17e-05 acagataaag aaactgag gcttagatca chr12:104970114-10497019 44 3.17e-05 gcagagggga agactgag gtgcagtgat chr8:86971002-86971082 38 3.17e-05 acagataagg aaactgag ataaacaaaa chr11:118781724-11878180 29 3.17e-05 ACAGATGAAA AGACTGAG GCCGGCCACA chr5:39186979-39187059 31 3.17e-05 gcagatgaga aaactgag gctaaaagag chr7:12605661-12605741 29 3.17e-05 acagatgaga aaactgag acacataatg chr3:77239011-77239091 14 3.17e-05 acagatacaa aaactgag gcataaagag chr19:39695888-39695968 59 3.17e-05 atactttggg agactgag gcaggtggat chr9:95821518-95821598 73 3.17e-05 acagatggag aaactgag chr1:167218108-167218188 28 3.17e-05 acagatgagg aaactgag gtacagaaag chr2:236930416-236930496 48 5.96e-05 tcactttggg aggctgag gtgggcaggt chr8:67838216-67838296 63 5.96e-05 agctacccgg aagctgag gcacgagaaa chr17:61510036-61510116 9 5.96e-05 ATCCGGAC AGGCTGAG AGGAGGCGGG chr1:167727219-167727299 68 5.96e-05 gctattcagg aggctgag gccag chr2:68363080-68363160 28 5.96e-05 gcactttggg aggctgag gcaggaggat chr1:27817531-27817611 48 5.96e-05 gctactcagg aggctgag gcggacaatc chr2:55857914-55857994 36 5.96e-05 acactttggg aggctgag gtgggcggat chr10:104749282-10474936 39 5.96e-05 gcactttggg aggctgag gcgggcggat chr20:33049226-33049306 51 5.96e-05 gcaccttgga aggctgag gtgggaggat chr1:45434429-45434509 36 5.96e-05 gctacttgga aggctgag gcaggagaac chr12:117020425-11702050 40 8.74e-05 tgttttgtag agactggg tcttgctgca chr16:87809216-87809296 59 1.12e-04 CAGTGAATGA Aggctggg cgcagtggct chr19:49382421-49382501 56 1.12e-04 gcctcccaag aagctggg actacaggtg chr2:9970493-9970573 66 1.46e-04 ACTTTTATTT AAAATGAG ACTTCTG chr7:100426584-100426664 45 1.79e-04 tttttttttg agacagag tctccctcta chr20:30913620-30913700 36 1.79e-04 tttttagtag agacagag tttcgccatg chr7:106860435-106860515 33 1.79e-04 acagatgggt aaacagag gcatagagaa chr12:110493289-11049336 24 1.79e-04 tgcctggcAG AGACAGAG GTATTAAATA chr16:187678-187758 70 1.79e-04 ttttcagtag agacagag ttt chr17:39686899-39686979 52 1.79e-04 acagataagg aaacagag gcttggtgag chr6:16056837-16056917 50 3.27e-04 gctcatctat aaaatggg gacacaaata chr8:56947949-56948029 73 3.27e-04 gtgcgcaggc aggcagag chr11:74736757-74736837 61 3.27e-04 tctcatctgc aaaatggg aataGgcttt chr11:36313919-36313999 73 3.27e-04 catcatccgt aaaatggg chr1:22378756-22378836 48 3.27e-04 gctactcggg aggcagag gcaggaggat chr6:35243792-35243872 70 3.27e-04 cctcatctgt aaaatggg tat chr2:32390258-32390338 36 3.27e-04 cttttttttg agacggag tctcgcgctg chr7:73937045-73937125 68 3.27e-04 tcctatctgc aaaatggg actaa chr2:30457462-30457542 68 3.27e-04 cttcatctgt aaaatggg gcaac chr15:55611904-55611984 58 3.27e-04 gctcgtctgt aaaatggg gctaataata chr12:110134498-11013457 52 3.27e-04 cctcaccttt aaaatggg gatacatttt chr1:156308970-156309050 13 3.27e-04 tgaaccctgg agacggag gttgcagtga chr1:39280996-39281076 29 3.27e-04 cttccactgt aaaatggg aataacagta chr5:134792659-134792739 49 3.27e-04 tctgctctgt aaaatggg gacaaattgc chr3:128176334-128176414 35 3.27e-04 ctgcatctgc aaaatggg ggtgaacagt chr12:117557880-11755796 26 3.27e-04 cttcatcaat aaaatggg tttatagtaa chr2:26620027-26620107 54 3.27e-04 cctcatctat aaaatggg atcaatatta chr1:11801709-11801789 55 3.27e-04 tctcagctgt aaaatggg gataataaga chr12:109163048-10916312 61 3.27e-04 tctcatctgt aaaatggg aatgctaaga chr2:191398054-191398134 51 3.27e-04 tctcatctgt aaaatggg tataaaatgg chr19:1247797-1247877 68 3.27e-04 cttcatctgt aaaatggg gtaat chr15:58717068-58717148 68 3.27e-04 tctcatctgt aaaatggg gaaaa chr16:8233477-8233557 69 3.27e-04 cttcacctgt aaaatggg cata chr6:27640847-27640927 64 3.54e-04 agcactttgg aggccgag gcggggggg chr6:28676741-28676821 29 3.54e-04 gcacgatggg aggccgag gcgggaggat chr3:47785059-47785139 6 3.54e-04 ttggg aggccgag tctggcgggt chr1:153644352-153644432 68 3.54e-04 gcactgtggg aggccgag acggg chr10:73974903-73974983 19 3.54e-04 gcactttagg aggccgag gcggatcatc chr17:74721242-74721322 10 3.54e-04 cactttggg aggccgag gcgggcagat chr7:135460828-135460908 73 3.54e-04 gcactttggg aggccgag chr14:81770761-81770841 67 3.54e-04 gcactttggg aggccgag gcaggt chr12:110536566-11053664 38 3.54e-04 gcactttggg aggccgag gcgggtggat chr12:98896504-98896584 38 3.54e-04 gcactttggg aggccgag gcaggtggat chr9:128046757-128046837 19 3.83e-04 ttttttaaag agacaggg tctcgttatg chr7:139898775-139898855 4 3.83e-04 tag agacaggg tttcaccatg chr2:26284412-26284492 33 3.83e-04 tttttggtag agacaggg tcttgttagg chr8:67574142-67574222 47 3.83e-04 tttttagtag aaacaggg tttcaccatc chr12:110536767-11053684 3 4.62e-04 gg aggcggag gttgcagtga chr2:122315071-122315151 17 4.62e-04 tgaacctggg aggcggag gttgcagtga chr16:75019536-75019616 24 4.62e-04 tgaacccggg aggcggag attgcagtga chr17:42768192-42768272 6 4.62e-04 ccagg aggcggag gttgcggtga chr11:63350525-63350605 5 4.62e-04 cggg aggcggag gttgcagtga chr12:116725953-11672603 39 5.43e-04 acagatgaga taactgag gcccagagag chr20:45829092-45829172 38 5.43e-04 ccgtgcaaca agacgggg gtttcaccat chr12:112278705-11227878 58 5.43e-04 tttgaaatag agacgggg tttcgccatg chr17:42767952-42768032 36 5.67e-04 tacaaaaata aggccggg cacggtggct chr2:70476609-70476689 8 5.67e-04 GCTGTTT Aggccggg ggcagtggct chr3:197466883-197466963 10 5.97e-04 ctgggtgac agagtgag actgtcttgg chr10:104749491-10474957 50 5.97e-04 cctgggcgac agagtgag aatcctatct chr12:104998718-10499879 40 6.74e-04 atggatgggg gaactgag gccaataact chr7:100426189-100426269 25 7.27e-04 TGTGTCCGAG AGGGTGAG GGGTCCGGCT chr16:81653787-81653867 27 7.87e-04 gtgtggggtg gagctgag aAGGTTTTGT chr5:96037420-96037500 33 7.87e-04 aggttgcagt gagctgag atcacgtgac chr3:156393395-156393475 18 7.87e-04 CCGGGACCAG GAGCTGAG CAAACCGCCG chr3:13654998-13655078 60 7.87e-04 tccaagaagg agaaagag ggggagcaaa chr4:110652424-110652504 26 7.87e-04 atgttgcagt gagctgag attgcaccac chr1:161581736-161581816 5 8.46e-04 gtca aaagtggg attcgaaccc chr17:76026350-76026430 9 8.94e-04 ctcctgaa tagctggg attacccgta chr7:2664580-2664660 40 8.94e-04 gcctctcaag tagctggg attacacaca chr6:139767176-139767256 23 8.94e-04 gcctcccaag tagctggg actacagggg chr7:98670799-98670879 55 8.94e-04 caaaaaaagt tagctggg cctggtgttg chr19:50861469-50861549 33 8.94e-04 gcctcccgag tagctggg attacaggca chr16:50099585-50099665 1 8.94e-04 . tagctggg actacacaca chr12:124908374-12490845 45 1.09e-03 acagacgagg aaattgag gttcagaggg chr9:126448488-126448568 28 1.09e-03 acagatgaga aaattgag tcgtagagaa chr19:46173217-46173297 20 1.50e-03 CCCTCAGCGC AAAGAGAG TTTCAAGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:15775515-15775595 3.2e-05 43_[+2]_29 chr11:96025627-96025707 3.2e-05 17_[+2]_55 chr12:48168136-48168216 3.2e-05 60_[+2]_12 chr1:26404146-26404226 3.2e-05 31_[+2]_41 chr1:12236517-12236597 3.2e-05 41_[+2]_31 chr17:25794103-25794183 3.2e-05 21_[+2]_51 chr16:16215167-16215247 3.2e-05 66_[+2]_6 chr1:41822567-41822647 3.2e-05 9_[+2]_63 chr1:61755069-61755149 3.2e-05 25_[+2]_47 chr2:12176587-12176667 3.2e-05 46_[+2]_26 chr12:93735339-93735419 3.2e-05 48_[+2]_24 chr3:171149472-171149552 3.2e-05 54_[+2]_18 chr6:158403813-158403893 3.2e-05 11_[+2]_61 chr11:85841125-85841205 3.2e-05 21_[+2]_51 chr6:158450880-158450960 3.2e-05 14_[+2]_58 chr1:120279415-120279495 3.2e-05 38_[+2]_34 chr12:104970114-10497019 3.2e-05 43_[+2]_29 chr8:86971002-86971082 3.2e-05 37_[+2]_35 chr11:118781724-11878180 3.2e-05 28_[+2]_44 chr5:39186979-39187059 3.2e-05 30_[+2]_42 chr7:12605661-12605741 3.2e-05 28_[+2]_44 chr3:77239011-77239091 3.2e-05 13_[+2]_59 chr19:39695888-39695968 3.2e-05 58_[+2]_14 chr9:95821518-95821598 3.2e-05 72_[+2] chr1:167218108-167218188 3.2e-05 27_[+2]_45 chr2:236930416-236930496 6e-05 47_[+2]_25 chr8:67838216-67838296 6e-05 62_[+2]_10 chr17:61510036-61510116 6e-05 8_[+2]_64 chr1:167727219-167727299 6e-05 67_[+2]_5 chr2:68363080-68363160 6e-05 27_[+2]_45 chr1:27817531-27817611 6e-05 47_[+2]_25 chr2:55857914-55857994 6e-05 35_[+2]_37 chr10:104749282-10474936 6e-05 38_[+2]_34 chr20:33049226-33049306 6e-05 50_[+2]_22 chr1:45434429-45434509 6e-05 35_[+2]_37 chr12:117020425-11702050 8.7e-05 39_[+2]_33 chr16:87809216-87809296 0.00011 58_[+2]_14 chr19:49382421-49382501 0.00011 55_[+2]_17 chr2:9970493-9970573 0.00015 65_[+2]_7 chr7:100426584-100426664 0.00018 44_[+2]_28 chr20:30913620-30913700 0.00018 35_[+2]_37 chr7:106860435-106860515 0.00018 32_[+2]_40 chr12:110493289-11049336 0.00018 23_[+2]_49 chr16:187678-187758 0.00018 69_[+2]_3 chr17:39686899-39686979 0.00018 51_[+2]_21 chr6:16056837-16056917 0.00033 49_[+2]_23 chr8:56947949-56948029 0.00033 72_[+2] chr11:74736757-74736837 0.00033 60_[+2]_12 chr11:36313919-36313999 0.00033 72_[+2] chr1:22378756-22378836 0.00033 47_[+2]_25 chr6:35243792-35243872 0.00033 69_[+2]_3 chr2:32390258-32390338 0.00033 35_[+2]_37 chr7:73937045-73937125 0.00033 67_[+2]_5 chr2:30457462-30457542 0.00033 67_[+2]_5 chr15:55611904-55611984 0.00033 57_[+2]_15 chr12:110134498-11013457 0.00033 51_[+2]_21 chr1:156308970-156309050 0.00033 12_[+2]_60 chr1:39280996-39281076 0.00033 28_[+2]_44 chr5:134792659-134792739 0.00033 48_[+2]_24 chr3:128176334-128176414 0.00033 34_[+2]_38 chr12:117557880-11755796 0.00033 25_[+2]_47 chr2:26620027-26620107 0.00033 53_[+2]_19 chr1:11801709-11801789 0.00033 54_[+2]_18 chr12:109163048-10916312 0.00033 60_[+2]_12 chr2:191398054-191398134 0.00033 50_[+2]_22 chr19:1247797-1247877 0.00033 67_[+2]_5 chr15:58717068-58717148 0.00033 67_[+2]_5 chr16:8233477-8233557 0.00033 68_[+2]_4 chr6:27640847-27640927 0.00035 63_[+2]_9 chr6:28676741-28676821 0.00035 28_[+2]_44 chr3:47785059-47785139 0.00035 5_[+2]_67 chr1:153644352-153644432 0.00035 67_[+2]_5 chr10:73974903-73974983 0.00035 18_[+2]_54 chr17:74721242-74721322 0.00035 9_[+2]_63 chr7:135460828-135460908 0.00035 72_[+2] chr14:81770761-81770841 0.00035 66_[+2]_6 chr12:110536566-11053664 0.00035 37_[+2]_35 chr12:98896504-98896584 0.00035 37_[+2]_35 chr9:128046757-128046837 0.00038 18_[+2]_54 chr7:139898775-139898855 0.00038 3_[+2]_69 chr2:26284412-26284492 0.00038 32_[+2]_40 chr8:67574142-67574222 0.00038 46_[+2]_26 chr12:110536767-11053684 0.00046 2_[+2]_70 chr2:122315071-122315151 0.00046 16_[+2]_56 chr16:75019536-75019616 0.00046 23_[+2]_49 chr17:42768192-42768272 0.00046 5_[+2]_67 chr11:63350525-63350605 0.00046 4_[+2]_68 chr12:116725953-11672603 0.00054 38_[+2]_34 chr20:45829092-45829172 0.00054 37_[+2]_35 chr12:112278705-11227878 0.00054 57_[+2]_15 chr17:42767952-42768032 0.00057 35_[+2]_37 chr2:70476609-70476689 0.00057 7_[+2]_65 chr3:197466883-197466963 0.0006 9_[+2]_63 chr10:104749491-10474957 0.0006 49_[+2]_23 chr12:104998718-10499879 0.00067 39_[+2]_33 chr7:100426189-100426269 0.00073 24_[+2]_48 chr16:81653787-81653867 0.00079 26_[+2]_46 chr5:96037420-96037500 0.00079 32_[+2]_40 chr3:156393395-156393475 0.00079 17_[+2]_55 chr3:13654998-13655078 0.00079 59_[+2]_13 chr4:110652424-110652504 0.00079 25_[+2]_47 chr1:161581736-161581816 0.00085 4_[+2]_68 chr17:76026350-76026430 0.00089 8_[+2]_64 chr7:2664580-2664660 0.00089 39_[+2]_33 chr6:139767176-139767256 0.00089 22_[+2]_50 chr7:98670799-98670879 0.00089 54_[+2]_18 chr19:50861469-50861549 0.00089 32_[+2]_40 chr16:50099585-50099665 0.00089 [+2]_72 chr12:124908374-12490845 0.0011 44_[+2]_28 chr9:126448488-126448568 0.0011 27_[+2]_45 chr19:46173217-46173297 0.0015 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARRCTGRG width=8 seqs=111 chr1:15775515-15775595 ( 44) AAACTGAG 1 chr11:96025627-96025707 ( 18) AAACTGAG 1 chr12:48168136-48168216 ( 61) AAACTGAG 1 chr1:26404146-26404226 ( 32) AAACTGAG 1 chr1:12236517-12236597 ( 42) AGACTGAG 1 chr17:25794103-25794183 ( 22) AAACTGAG 1 chr16:16215167-16215247 ( 67) AAACTGAG 1 chr1:41822567-41822647 ( 10) AAACTGAG 1 chr1:61755069-61755149 ( 26) AAACTGAG 1 chr2:12176587-12176667 ( 47) AAACTGAG 1 chr12:93735339-93735419 ( 49) AAACTGAG 1 chr3:171149472-171149552 ( 55) AAACTGAG 1 chr6:158403813-158403893 ( 12) AAACTGAG 1 chr11:85841125-85841205 ( 22) AAACTGAG 1 chr6:158450880-158450960 ( 15) AGACTGAG 1 chr1:120279415-120279495 ( 39) AAACTGAG 1 chr12:104970114-10497019 ( 44) AGACTGAG 1 chr8:86971002-86971082 ( 38) AAACTGAG 1 chr11:118781724-11878180 ( 29) AGACTGAG 1 chr5:39186979-39187059 ( 31) AAACTGAG 1 chr7:12605661-12605741 ( 29) AAACTGAG 1 chr3:77239011-77239091 ( 14) AAACTGAG 1 chr19:39695888-39695968 ( 59) AGACTGAG 1 chr9:95821518-95821598 ( 73) AAACTGAG 1 chr1:167218108-167218188 ( 28) AAACTGAG 1 chr2:236930416-236930496 ( 48) AGGCTGAG 1 chr8:67838216-67838296 ( 63) AAGCTGAG 1 chr17:61510036-61510116 ( 9) AGGCTGAG 1 chr1:167727219-167727299 ( 68) AGGCTGAG 1 chr2:68363080-68363160 ( 28) AGGCTGAG 1 chr1:27817531-27817611 ( 48) AGGCTGAG 1 chr2:55857914-55857994 ( 36) AGGCTGAG 1 chr10:104749282-10474936 ( 39) AGGCTGAG 1 chr20:33049226-33049306 ( 51) AGGCTGAG 1 chr1:45434429-45434509 ( 36) AGGCTGAG 1 chr12:117020425-11702050 ( 40) AGACTGGG 1 chr16:87809216-87809296 ( 59) AGGCTGGG 1 chr19:49382421-49382501 ( 56) AAGCTGGG 1 chr2:9970493-9970573 ( 66) AAAATGAG 1 chr7:100426584-100426664 ( 45) AGACAGAG 1 chr20:30913620-30913700 ( 36) AGACAGAG 1 chr7:106860435-106860515 ( 33) AAACAGAG 1 chr12:110493289-11049336 ( 24) AGACAGAG 1 chr16:187678-187758 ( 70) AGACAGAG 1 chr17:39686899-39686979 ( 52) AAACAGAG 1 chr6:16056837-16056917 ( 50) AAAATGGG 1 chr8:56947949-56948029 ( 73) AGGCAGAG 1 chr11:74736757-74736837 ( 61) AAAATGGG 1 chr11:36313919-36313999 ( 73) AAAATGGG 1 chr1:22378756-22378836 ( 48) AGGCAGAG 1 chr6:35243792-35243872 ( 70) AAAATGGG 1 chr2:32390258-32390338 ( 36) AGACGGAG 1 chr7:73937045-73937125 ( 68) AAAATGGG 1 chr2:30457462-30457542 ( 68) AAAATGGG 1 chr15:55611904-55611984 ( 58) AAAATGGG 1 chr12:110134498-11013457 ( 52) AAAATGGG 1 chr1:156308970-156309050 ( 13) AGACGGAG 1 chr1:39280996-39281076 ( 29) AAAATGGG 1 chr5:134792659-134792739 ( 49) AAAATGGG 1 chr3:128176334-128176414 ( 35) AAAATGGG 1 chr12:117557880-11755796 ( 26) AAAATGGG 1 chr2:26620027-26620107 ( 54) AAAATGGG 1 chr1:11801709-11801789 ( 55) AAAATGGG 1 chr12:109163048-10916312 ( 61) AAAATGGG 1 chr2:191398054-191398134 ( 51) AAAATGGG 1 chr19:1247797-1247877 ( 68) AAAATGGG 1 chr15:58717068-58717148 ( 68) AAAATGGG 1 chr16:8233477-8233557 ( 69) AAAATGGG 1 chr6:27640847-27640927 ( 64) AGGCCGAG 1 chr6:28676741-28676821 ( 29) AGGCCGAG 1 chr3:47785059-47785139 ( 6) AGGCCGAG 1 chr1:153644352-153644432 ( 68) AGGCCGAG 1 chr10:73974903-73974983 ( 19) AGGCCGAG 1 chr17:74721242-74721322 ( 10) AGGCCGAG 1 chr7:135460828-135460908 ( 73) AGGCCGAG 1 chr14:81770761-81770841 ( 67) AGGCCGAG 1 chr12:110536566-11053664 ( 38) AGGCCGAG 1 chr12:98896504-98896584 ( 38) AGGCCGAG 1 chr9:128046757-128046837 ( 19) AGACAGGG 1 chr7:139898775-139898855 ( 4) AGACAGGG 1 chr2:26284412-26284492 ( 33) AGACAGGG 1 chr8:67574142-67574222 ( 47) AAACAGGG 1 chr12:110536767-11053684 ( 3) AGGCGGAG 1 chr2:122315071-122315151 ( 17) AGGCGGAG 1 chr16:75019536-75019616 ( 24) AGGCGGAG 1 chr17:42768192-42768272 ( 6) AGGCGGAG 1 chr11:63350525-63350605 ( 5) AGGCGGAG 1 chr12:116725953-11672603 ( 39) TAACTGAG 1 chr20:45829092-45829172 ( 38) AGACGGGG 1 chr12:112278705-11227878 ( 58) AGACGGGG 1 chr17:42767952-42768032 ( 36) AGGCCGGG 1 chr2:70476609-70476689 ( 8) AGGCCGGG 1 chr3:197466883-197466963 ( 10) AGAGTGAG 1 chr10:104749491-10474957 ( 50) AGAGTGAG 1 chr12:104998718-10499879 ( 40) GAACTGAG 1 chr7:100426189-100426269 ( 25) AGGGTGAG 1 chr16:81653787-81653867 ( 27) GAGCTGAG 1 chr5:96037420-96037500 ( 33) GAGCTGAG 1 chr3:156393395-156393475 ( 18) GAGCTGAG 1 chr3:13654998-13655078 ( 60) AGAAAGAG 1 chr4:110652424-110652504 ( 26) GAGCTGAG 1 chr1:161581736-161581816 ( 5) AAAGTGGG 1 chr17:76026350-76026430 ( 9) TAGCTGGG 1 chr7:2664580-2664660 ( 40) TAGCTGGG 1 chr6:139767176-139767256 ( 23) TAGCTGGG 1 chr7:98670799-98670879 ( 55) TAGCTGGG 1 chr19:50861469-50861549 ( 33) TAGCTGGG 1 chr16:50099585-50099665 ( 1) TAGCTGGG 1 chr12:124908374-12490845 ( 45) AAATTGAG 1 chr9:126448488-126448568 ( 28) AAATTGAG 1 chr19:46173217-46173297 ( 20) AAAGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.95209 E= 3.0e-036 175 -1344 -237 -201 105 -1344 95 -1344 123 -1344 70 -1344 -48 160 -237 -382 -107 -119 -152 143 -1344 -1344 210 -1344 133 -1344 51 -1344 -1344 -1344 210 -1344 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 3.0e-036 0.891892 0.000000 0.045045 0.063063 0.549550 0.000000 0.450450 0.000000 0.621622 0.000000 0.378378 0.000000 0.189189 0.747748 0.045045 0.018018 0.126126 0.108108 0.081081 0.684685 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRCTGRG MEME-2 regular expression -------------------------------------------------------------------------------- A[AG][AG]CTG[AG]G -------------------------------------------------------------------------------- Time 8.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTACAGR MEME-3 width = 8 sites = 44 llr = 426 E-value = 2.5e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::a:a:6 pos.-specific C ::::a::: probability G ::::::a4 matrix T 7aa::::: bits 2.1 * * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.0 ******** (14.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTACAGA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:15775515-15775595 31 1.78e-05 tcatgcccat tttacaga tgagaaaact chr11:96025627-96025707 5 1.78e-05 ccat tttacaga tgatgaaact chr12:48168136-48168216 48 1.78e-05 ttatgtccat tttacaga taaggaaact chr1:26404146-26404226 19 1.78e-05 ccatccccat tttacaga tgagaaaact chr17:25794103-25794183 9 1.78e-05 gtccccat tttacaga tgaagaaact chr1:109323668-109323748 51 1.78e-05 CTTATCTCTG TTTACAGA TCACTTATAA chr16:16215167-16215247 54 1.78e-05 ttgttcccat tttacaga taaggaaact chr1:61755069-61755149 13 1.78e-05 gtgtgcccat tttacaga ttaggaaact chr12:116725953-11672603 26 1.78e-05 cagaacccat tttacaga tgagataact chr2:12176587-12176667 34 1.78e-05 tcatccccat tttacaga tgagaaaact chr3:171149472-171149552 42 1.78e-05 ttattcccat tttacaga taggaaaact chr12:122370183-12237026 28 1.78e-05 atatatccat tttacaga agaagaaact chr6:43902490-43902570 71 1.78e-05 ttatccccat tttacaga tt chr7:106860435-106860515 20 1.78e-05 acatccccat tttacaga tgggtaaaca chr16:68767004-68767084 10 1.78e-05 cattcccat tttacaga tgaggaaacc chr17:58117533-58117613 49 1.78e-05 ttatccccat tttacaga tgaataaaat chr8:86971002-86971082 25 1.78e-05 gtgttcccat tttacaga taaggaaact chr17:39686899-39686979 39 1.78e-05 ttatctccat tttacaga taaggaaaca chr12:124908374-12490845 32 1.78e-05 ctatacccat tttacaga cgaggaaatt chr5:149125272-149125352 15 1.78e-05 gtattcccat tttacaga tgggaaaata chr16:22207668-22207748 5 1.78e-05 ccat tttacaga ggaggaaaat chr3:77239011-77239091 1 1.78e-05 . tttacaga tacaaaaact chr12:108522484-10852256 55 1.78e-05 ctgtccccat tttacaga tggggacaca chr1:51177410-51177490 35 1.78e-05 ccTGTTCTTT TTTACAGA GGTCTTGTTT chr9:95821518-95821598 60 1.78e-05 GCAGctccac tttacaga tggagaaact chr9:126448488-126448568 15 1.78e-05 attatcccat tttacaga tgagaaaatt chr1:167218108-167218188 15 1.78e-05 ttatccccat tttacaga tgaggaaact chr20:45317281-45317361 8 3.34e-05 ctcccat tttacagg tgagaaaacc chr11:85841125-85841205 9 3.34e-05 atgtccat tttacagg tgaggaaact chr6:158450880-158450960 2 3.34e-05 t tttacagg tagagagact chr7:77535501-77535581 73 6.81e-05 aagtgctgag attacagg chr11:59333278-59333358 32 6.81e-05 aaatgctggg attacagg cgtgagccac chr3:151961834-151961914 31 6.81e-05 aagtgctggg attacagg cgtcagccac chr2:9970493-9970573 23 6.81e-05 aagtgctggg attacagg cgtgagtcac chr1:155828690-155828770 67 6.81e-05 aaggtttggg attacagg catgag chr19:860404-860484 73 6.81e-05 aagtgctggg attacagg chr1:31542358-31542438 15 6.81e-05 gagtgccagg attacagg catgagccac chr8:41410801-41410881 21 6.81e-05 aagtgctgaa attacagg tgtgagccac chr19:50861469-50861549 41 6.81e-05 agtagctggg attacagg catgcgccac chr2:238872288-238872368 4 6.81e-05 gag attacagg catgagccac chr12:110703827-11070390 30 6.81e-05 aagtgctggg attacagg tgtgagtcac chr17:77697534-77697614 49 6.81e-05 aagtgctgga attacagg cgcgagtcac chr19:50178924-50179004 34 6.81e-05 aaatgctggg attacagg cgtgagtcac chr22:41776364-41776444 66 6.81e-05 aagtgccggg attacagg cgtgagt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:15775515-15775595 1.8e-05 30_[+3]_42 chr11:96025627-96025707 1.8e-05 4_[+3]_68 chr12:48168136-48168216 1.8e-05 47_[+3]_25 chr1:26404146-26404226 1.8e-05 18_[+3]_54 chr17:25794103-25794183 1.8e-05 8_[+3]_64 chr1:109323668-109323748 1.8e-05 50_[+3]_22 chr16:16215167-16215247 1.8e-05 53_[+3]_19 chr1:61755069-61755149 1.8e-05 12_[+3]_60 chr12:116725953-11672603 1.8e-05 25_[+3]_47 chr2:12176587-12176667 1.8e-05 33_[+3]_39 chr3:171149472-171149552 1.8e-05 41_[+3]_31 chr12:122370183-12237026 1.8e-05 27_[+3]_45 chr6:43902490-43902570 1.8e-05 70_[+3]_2 chr7:106860435-106860515 1.8e-05 19_[+3]_53 chr16:68767004-68767084 1.8e-05 9_[+3]_63 chr17:58117533-58117613 1.8e-05 48_[+3]_24 chr8:86971002-86971082 1.8e-05 24_[+3]_48 chr17:39686899-39686979 1.8e-05 38_[+3]_34 chr12:124908374-12490845 1.8e-05 31_[+3]_41 chr5:149125272-149125352 1.8e-05 14_[+3]_58 chr16:22207668-22207748 1.8e-05 4_[+3]_68 chr3:77239011-77239091 1.8e-05 [+3]_72 chr12:108522484-10852256 1.8e-05 54_[+3]_18 chr1:51177410-51177490 1.8e-05 34_[+3]_38 chr9:95821518-95821598 1.8e-05 59_[+3]_13 chr9:126448488-126448568 1.8e-05 14_[+3]_58 chr1:167218108-167218188 1.8e-05 14_[+3]_58 chr20:45317281-45317361 3.3e-05 7_[+3]_65 chr11:85841125-85841205 3.3e-05 8_[+3]_64 chr6:158450880-158450960 3.3e-05 1_[+3]_71 chr7:77535501-77535581 6.8e-05 72_[+3] chr11:59333278-59333358 6.8e-05 31_[+3]_41 chr3:151961834-151961914 6.8e-05 30_[+3]_42 chr2:9970493-9970573 6.8e-05 22_[+3]_50 chr1:155828690-155828770 6.8e-05 66_[+3]_6 chr19:860404-860484 6.8e-05 72_[+3] chr1:31542358-31542438 6.8e-05 14_[+3]_58 chr8:41410801-41410881 6.8e-05 20_[+3]_52 chr19:50861469-50861549 6.8e-05 40_[+3]_32 chr2:238872288-238872368 6.8e-05 3_[+3]_69 chr12:110703827-11070390 6.8e-05 29_[+3]_43 chr17:77697534-77697614 6.8e-05 48_[+3]_24 chr19:50178924-50179004 6.8e-05 33_[+3]_39 chr22:41776364-41776444 6.8e-05 65_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTACAGR width=8 seqs=44 chr1:15775515-15775595 ( 31) TTTACAGA 1 chr11:96025627-96025707 ( 5) TTTACAGA 1 chr12:48168136-48168216 ( 48) TTTACAGA 1 chr1:26404146-26404226 ( 19) TTTACAGA 1 chr17:25794103-25794183 ( 9) TTTACAGA 1 chr1:109323668-109323748 ( 51) TTTACAGA 1 chr16:16215167-16215247 ( 54) TTTACAGA 1 chr1:61755069-61755149 ( 13) TTTACAGA 1 chr12:116725953-11672603 ( 26) TTTACAGA 1 chr2:12176587-12176667 ( 34) TTTACAGA 1 chr3:171149472-171149552 ( 42) TTTACAGA 1 chr12:122370183-12237026 ( 28) TTTACAGA 1 chr6:43902490-43902570 ( 71) TTTACAGA 1 chr7:106860435-106860515 ( 20) TTTACAGA 1 chr16:68767004-68767084 ( 10) TTTACAGA 1 chr17:58117533-58117613 ( 49) TTTACAGA 1 chr8:86971002-86971082 ( 25) TTTACAGA 1 chr17:39686899-39686979 ( 39) TTTACAGA 1 chr12:124908374-12490845 ( 32) TTTACAGA 1 chr5:149125272-149125352 ( 15) TTTACAGA 1 chr16:22207668-22207748 ( 5) TTTACAGA 1 chr3:77239011-77239091 ( 1) TTTACAGA 1 chr12:108522484-10852256 ( 55) TTTACAGA 1 chr1:51177410-51177490 ( 35) TTTACAGA 1 chr9:95821518-95821598 ( 60) TTTACAGA 1 chr9:126448488-126448568 ( 15) TTTACAGA 1 chr1:167218108-167218188 ( 15) TTTACAGA 1 chr20:45317281-45317361 ( 8) TTTACAGG 1 chr11:85841125-85841205 ( 9) TTTACAGG 1 chr6:158450880-158450960 ( 2) TTTACAGG 1 chr7:77535501-77535581 ( 73) ATTACAGG 1 chr11:59333278-59333358 ( 32) ATTACAGG 1 chr3:151961834-151961914 ( 31) ATTACAGG 1 chr2:9970493-9970573 ( 23) ATTACAGG 1 chr1:155828690-155828770 ( 67) ATTACAGG 1 chr19:860404-860484 ( 73) ATTACAGG 1 chr1:31542358-31542438 ( 15) ATTACAGG 1 chr8:41410801-41410881 ( 21) ATTACAGG 1 chr19:50861469-50861549 ( 41) ATTACAGG 1 chr2:238872288-238872368 ( 4) ATTACAGG 1 chr12:110703827-11070390 ( 30) ATTACAGG 1 chr17:77697534-77697614 ( 49) ATTACAGG 1 chr19:50178924-50179004 ( 34) ATTACAGG 1 chr22:41776364-41776444 ( 66) ATTACAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.24397 E= 2.5e-037 27 -1210 -1210 142 -1210 -1210 -1210 197 -1210 -1210 -1210 197 192 -1210 -1210 -1210 -1210 202 -1210 -1210 192 -1210 -1210 -1210 -1210 -1210 210 -1210 121 -1210 73 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.5e-037 0.318182 0.000000 0.000000 0.681818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.613636 0.000000 0.386364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTACAGR MEME-3 regular expression -------------------------------------------------------------------------------- [TA]TTACAG[AG] -------------------------------------------------------------------------------- Time 11.93 secs. ******************************************************************************** ******************************************************************************** MOTIF TRWYCYCA MEME-4 width = 8 sites = 92 llr = 652 E-value = 1.5e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :55::::a pos.-specific C 1::4a6a: probability G :311:::: matrix T 9245:4:: bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 * * ** Relative 1.3 * * ** Entropy 1.0 * **** (10.2 bits) 0.8 * **** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAATCCCA consensus GTC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:28676741-28676821 11 1.82e-05 cccacgccta taatccca gcacgatggg chr12:122181191-12218127 9 1.82e-05 cacgcctg taatccca gcactttggc chr2:236930416-236930496 30 1.82e-05 ctcacacctc taatccca tcactttggg chr10:73974903-73974983 1 1.82e-05 . taatccca gcactttagg chr3:15352811-15352891 5 1.82e-05 cctg taatccca gcactttggg chr2:68363080-68363160 10 1.82e-05 tcacgccca taatccca gcactttggg chr11:59332741-59332821 65 1.82e-05 ctcgtgcctg taatccca acactttg chr1:27817531-27817611 30 1.82e-05 cgcatgcctg taatccca gctactcagg chr17:42767952-42768032 62 1.82e-05 ctcactcccg taatccca gcactttgga chr7:135460828-135460908 55 1.82e-05 ctcatgccta taatccca gcactttggg chr4:110652221-110652301 31 1.82e-05 tttacgcctg taatccca gcaccttggg chr12:110536566-11053664 20 1.82e-05 ctcacgactg taatccca gcactttggg chr10:104749282-10474936 21 1.82e-05 ctcatgcctg taatccca gcactttggg chr12:122308223-12230830 69 1.82e-05 cgcatgcctg taatccca gcta chr17:73106870-73106950 58 1.82e-05 agagtgcctg taatccca gctactagtg chr12:112791377-11279145 1 1.82e-05 . taatccca gactttggga chr1:45434429-45434509 18 1.82e-05 cgtgtgcctg taatccca gctacttgga chr1:31504235-31504315 48 5.34e-05 tcacagtgat tattccca ttttagagat chr3:171149472-171149552 33 5.34e-05 gtaaaatcat tattccca ttttacagat chr5:149125272-149125352 6 5.34e-05 agaag tattccca ttttacagat chr6:43902490-43902570 62 8.93e-05 TCATCGGtat tatcccca ttttacagat chr17:58117533-58117613 40 8.93e-05 taggcacttt tatcccca ttttacagat chr5:39186979-39187059 10 8.93e-05 tagacttat tatcccca ttagcagatg chr7:12605661-12605741 7 8.93e-05 tgtcag tatcccca ttccacagat chr6:35362245-35362325 46 8.93e-05 ctcatgcctg taatctca gcactttggg chr12:104998718-10499879 18 8.93e-05 ctaggtttta tatcccca ttttatggat chr1:167218108-167218188 6 8.93e-05 ataat tatcccca ttttacagat chr9:130462137-130462217 34 1.42e-04 agaagttact taacctca attttcccat chr1:22378756-22378836 30 1.42e-04 caggtgccag tgatccca gctactcggg chr12:54753725-54753805 42 1.42e-04 TTCTGAGGTC TAACCTCA ATCCCTATTG chr11:44399543-44399623 58 1.42e-04 agtttttact tattctca atttcctcat chr16:16215167-16215247 45 1.90e-04 caagccttgt tgttccca ttttacagat chr8:86971002-86971082 16 1.90e-04 acactatgag tgttccca ttttacagat chr12:108522484-10852256 46 2.22e-04 cgggcattac tgtcccca ttttacagat chr19:36294161-36294241 58 2.22e-04 tgcagtggca tgatctca gctcactgca chr1:15771445-15771525 56 2.54e-04 gttgaacctc tgacctca gtttttccat chr17:30676110-30676190 2 2.54e-04 c tgacctca agtgatccgc chr17:8150834-8150914 21 2.54e-04 ctcgaactcc tgacctca agtaatccgc chr1:155828690-155828770 23 2.54e-04 ctcgaactcc tgacctca agtgatctgc chr11:66140130-66140210 50 2.54e-04 ctcgaactct tgacctca ggtgatccgc chr19:860404-860484 10 2.54e-04 ttgaactcc tgacctca tgatctgcac chr2:71558466-71558546 59 2.54e-04 ctcgaactcc tgacctca gatgatccac chr19:40715538-40715618 11 2.54e-04 atcgaactcc tgacctca agtgatccac chr17:77697534-77697614 5 2.54e-04 ctcc tgacctca ggtgatccac chr7:139898775-139898855 46 2.54e-04 ctcgaactcc tgacctca agtgaccaac chr11:118933586-11893366 38 2.54e-04 ctcgaactcc tgacctca ggtgatctgc chr3:172259127-172259207 10 2.54e-04 tcgaacttc tgacctca agtaacccgc chr7:156659475-156659555 50 2.54e-04 ctggaactcc tgacctca tgatccaccc chr6:71275747-71275827 48 2.54e-04 ctcgaactcc tgacctca ggtaatctac chr22:41776364-41776444 23 2.54e-04 ctcgaactcc tgacctca ggtgatccgc chr9:126448488-126448568 6 2.87e-04 atgaa ttatccca ttttacagat chr19:4790851-4790931 61 3.37e-04 tggatgtctg tagtccca gctactcggg chr8:67838216-67838296 46 3.37e-04 cgcgtgcctg tagtccca gctacccgga chr19:49955756-49955836 9 3.37e-04 cctgcctg tagtccca gctactgtgc chr12:117038891-11703897 50 3.37e-04 ggcacctcag ttttccca cctgtcaaat chr20:61426355-61426435 45 3.37e-04 tgagcgcctg tagtccca gctacccggg chr22:27990599-27990679 64 3.87e-04 taaacctcag tttcccca tctgtaaaa chr12:48168136-48168216 13 4.38e-04 atccttacat tagtctca tgaagtaggc chr6:43707001-43707081 49 4.38e-04 tgggcctcag ttttctca tctgtaaaat chr11:74736757-74736837 48 4.38e-04 acagccttag ttttctca tctgcaaaat chr1:11801709-11801789 42 4.38e-04 tgagcctcag ttttctca gctgtaaaat chr12:109163048-10916312 48 4.38e-04 tgaacctcag ttttctca tctgtaaaat chr2:191398054-191398134 38 4.38e-04 CAAAccttcg ttttctca tctgtaaaat chr15:58717068-58717148 55 4.38e-04 cgaacctcag ttttctca tctgtaaaat chr1:39298164-39298244 49 4.38e-04 tgtgcctcag ttttctca tctgtaaaat chr12:121021715-12102179 31 4.85e-04 cagatcttag tttcctca tctgtgcaat chr1:167727219-167727299 50 4.85e-04 cacgcccctg tggtccca gctattcagg chr12:110134498-11013457 39 4.85e-04 tgagcctcag tttcctca cctttaaaat chr2:26620027-26620107 41 4.85e-04 taagccttag tttcctca tctataaaat chr12:51789814-51789894 39 4.85e-04 tgtgcctcaa tttcctca tctgtaaaat chr12:93735339-93735419 27 4.99e-04 tcaaaatcac tggcccca ttttatagat chr6:2965098-2965178 65 5.44e-04 ctcgaactcc tggcctca agcaatcc chr9:128046757-128046837 61 5.44e-04 ctcgaactcc tggcctca agtgatcctc chr2:55857914-55857994 18 5.44e-04 ctcacacctg taagccca acactttggg chr19:1247797-1247877 46 5.44e-04 TCATTGGCTG TGgcctca gtttcttcat chr16:50099585-50099665 27 5.60e-04 cacacgccac tatgccca gataattttt chr16:66933051-66933131 38 6.56e-04 tgtaaaaggt tgtgccca aggtcacaaa chr1:61755069-61755149 4 6.56e-04 tag tgtgccca ttttacagat chr2:9970493-9970573 41 6.56e-04 cgtgagtcac tgtgccca gccCTAGACT chr7:2371581-2371661 3 6.56e-04 tg caatccca gcactttgag chr17:42621677-42621757 12 6.56e-04 acagacttat tgtgccca ttcttcagat chr1:41822567-41822647 38 7.20e-04 gggaagttac ttgcccca agctcaTTTT chr16:68767004-68767084 1 7.20e-04 . cattccca ttttacagat chr1:26404146-26404226 10 7.85e-04 taccactac catcccca ttttacagat chr2:12176587-12176667 25 7.85e-04 tgaatattgt catcccca ttttacagat chr7:106860435-106860515 11 7.85e-04 ggtactatta catcccca ttttacagat chr12:92798401-92798481 6 7.85e-04 TAGTA TGTGCTCA ATTAATATTA chr6:35243792-35243872 57 8.51e-04 taagcctcag ttgcctca tctgtaaaat chr12:112278705-11227878 13 8.51e-04 cccacatctc caacctca tcCTTTTTAT chr8:27182114-27182194 11 8.51e-04 cagggggcgc cattctca gaaagtacat chr2:238872075-238872155 43 8.51e-04 tggttcactg caacctca gcctcccggg chr6:26988413-26988493 13 9.29e-04 TTCTGCACGT CGATCTCA GGTAAAGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28676741-28676821 1.8e-05 10_[+4]_62 chr12:122181191-12218127 1.8e-05 8_[+4]_64 chr2:236930416-236930496 1.8e-05 29_[+4]_43 chr10:73974903-73974983 1.8e-05 [+4]_72 chr3:15352811-15352891 1.8e-05 4_[+4]_68 chr2:68363080-68363160 1.8e-05 9_[+4]_63 chr11:59332741-59332821 1.8e-05 64_[+4]_8 chr1:27817531-27817611 1.8e-05 29_[+4]_43 chr17:42767952-42768032 1.8e-05 61_[+4]_11 chr7:135460828-135460908 1.8e-05 54_[+4]_18 chr4:110652221-110652301 1.8e-05 30_[+4]_42 chr12:110536566-11053664 1.8e-05 19_[+4]_53 chr10:104749282-10474936 1.8e-05 20_[+4]_52 chr12:122308223-12230830 1.8e-05 68_[+4]_4 chr17:73106870-73106950 1.8e-05 57_[+4]_15 chr12:112791377-11279145 1.8e-05 [+4]_72 chr1:45434429-45434509 1.8e-05 17_[+4]_55 chr1:31504235-31504315 5.3e-05 47_[+4]_25 chr3:171149472-171149552 5.3e-05 32_[+4]_40 chr5:149125272-149125352 5.3e-05 5_[+4]_67 chr6:43902490-43902570 8.9e-05 61_[+4]_11 chr17:58117533-58117613 8.9e-05 39_[+4]_33 chr5:39186979-39187059 8.9e-05 9_[+4]_63 chr7:12605661-12605741 8.9e-05 6_[+4]_66 chr6:35362245-35362325 8.9e-05 45_[+4]_27 chr12:104998718-10499879 8.9e-05 17_[+4]_55 chr1:167218108-167218188 8.9e-05 5_[+4]_67 chr9:130462137-130462217 0.00014 33_[+4]_39 chr1:22378756-22378836 0.00014 29_[+4]_43 chr12:54753725-54753805 0.00014 41_[+4]_31 chr11:44399543-44399623 0.00014 57_[+4]_15 chr16:16215167-16215247 0.00019 44_[+4]_28 chr8:86971002-86971082 0.00019 15_[+4]_57 chr12:108522484-10852256 0.00022 45_[+4]_27 chr19:36294161-36294241 0.00022 57_[+4]_15 chr1:15771445-15771525 0.00025 55_[+4]_17 chr17:30676110-30676190 0.00025 1_[+4]_71 chr17:8150834-8150914 0.00025 20_[+4]_52 chr1:155828690-155828770 0.00025 22_[+4]_50 chr11:66140130-66140210 0.00025 49_[+4]_23 chr19:860404-860484 0.00025 9_[+4]_63 chr2:71558466-71558546 0.00025 58_[+4]_14 chr19:40715538-40715618 0.00025 10_[+4]_62 chr17:77697534-77697614 0.00025 4_[+4]_68 chr7:139898775-139898855 0.00025 45_[+4]_27 chr11:118933586-11893366 0.00025 37_[+4]_35 chr3:172259127-172259207 0.00025 9_[+4]_63 chr7:156659475-156659555 0.00025 49_[+4]_23 chr6:71275747-71275827 0.00025 47_[+4]_25 chr22:41776364-41776444 0.00025 22_[+4]_50 chr9:126448488-126448568 0.00029 5_[+4]_67 chr19:4790851-4790931 0.00034 60_[+4]_12 chr8:67838216-67838296 0.00034 45_[+4]_27 chr19:49955756-49955836 0.00034 8_[+4]_64 chr12:117038891-11703897 0.00034 49_[+4]_23 chr20:61426355-61426435 0.00034 44_[+4]_28 chr22:27990599-27990679 0.00039 63_[+4]_9 chr12:48168136-48168216 0.00044 12_[+4]_60 chr6:43707001-43707081 0.00044 48_[+4]_24 chr11:74736757-74736837 0.00044 47_[+4]_25 chr1:11801709-11801789 0.00044 41_[+4]_31 chr12:109163048-10916312 0.00044 47_[+4]_25 chr2:191398054-191398134 0.00044 37_[+4]_35 chr15:58717068-58717148 0.00044 54_[+4]_18 chr1:39298164-39298244 0.00044 48_[+4]_24 chr12:121021715-12102179 0.00049 30_[+4]_42 chr1:167727219-167727299 0.00049 49_[+4]_23 chr12:110134498-11013457 0.00049 38_[+4]_34 chr2:26620027-26620107 0.00049 40_[+4]_32 chr12:51789814-51789894 0.00049 38_[+4]_34 chr12:93735339-93735419 0.0005 26_[+4]_46 chr6:2965098-2965178 0.00054 64_[+4]_8 chr9:128046757-128046837 0.00054 60_[+4]_12 chr2:55857914-55857994 0.00054 17_[+4]_55 chr19:1247797-1247877 0.00054 45_[+4]_27 chr16:50099585-50099665 0.00056 26_[+4]_46 chr16:66933051-66933131 0.00066 37_[+4]_35 chr1:61755069-61755149 0.00066 3_[+4]_69 chr2:9970493-9970573 0.00066 40_[+4]_32 chr7:2371581-2371661 0.00066 2_[+4]_70 chr17:42621677-42621757 0.00066 11_[+4]_61 chr1:41822567-41822647 0.00072 37_[+4]_35 chr16:68767004-68767084 0.00072 [+4]_72 chr1:26404146-26404226 0.00078 9_[+4]_63 chr2:12176587-12176667 0.00078 24_[+4]_48 chr7:106860435-106860515 0.00078 10_[+4]_62 chr12:92798401-92798481 0.00078 5_[+4]_67 chr6:35243792-35243872 0.00085 56_[+4]_16 chr12:112278705-11227878 0.00085 12_[+4]_60 chr8:27182114-27182194 0.00085 10_[+4]_62 chr2:238872075-238872155 0.00085 42_[+4]_30 chr6:26988413-26988493 0.00093 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRWYCYCA width=8 seqs=92 chr6:28676741-28676821 ( 11) TAATCCCA 1 chr12:122181191-12218127 ( 9) TAATCCCA 1 chr2:236930416-236930496 ( 30) TAATCCCA 1 chr10:73974903-73974983 ( 1) TAATCCCA 1 chr3:15352811-15352891 ( 5) TAATCCCA 1 chr2:68363080-68363160 ( 10) TAATCCCA 1 chr11:59332741-59332821 ( 65) TAATCCCA 1 chr1:27817531-27817611 ( 30) TAATCCCA 1 chr17:42767952-42768032 ( 62) TAATCCCA 1 chr7:135460828-135460908 ( 55) TAATCCCA 1 chr4:110652221-110652301 ( 31) TAATCCCA 1 chr12:110536566-11053664 ( 20) TAATCCCA 1 chr10:104749282-10474936 ( 21) TAATCCCA 1 chr12:122308223-12230830 ( 69) TAATCCCA 1 chr17:73106870-73106950 ( 58) TAATCCCA 1 chr12:112791377-11279145 ( 1) TAATCCCA 1 chr1:45434429-45434509 ( 18) TAATCCCA 1 chr1:31504235-31504315 ( 48) TATTCCCA 1 chr3:171149472-171149552 ( 33) TATTCCCA 1 chr5:149125272-149125352 ( 6) TATTCCCA 1 chr6:43902490-43902570 ( 62) TATCCCCA 1 chr17:58117533-58117613 ( 40) TATCCCCA 1 chr5:39186979-39187059 ( 10) TATCCCCA 1 chr7:12605661-12605741 ( 7) TATCCCCA 1 chr6:35362245-35362325 ( 46) TAATCTCA 1 chr12:104998718-10499879 ( 18) TATCCCCA 1 chr1:167218108-167218188 ( 6) TATCCCCA 1 chr9:130462137-130462217 ( 34) TAACCTCA 1 chr1:22378756-22378836 ( 30) TGATCCCA 1 chr12:54753725-54753805 ( 42) TAACCTCA 1 chr11:44399543-44399623 ( 58) TATTCTCA 1 chr16:16215167-16215247 ( 45) TGTTCCCA 1 chr8:86971002-86971082 ( 16) TGTTCCCA 1 chr12:108522484-10852256 ( 46) TGTCCCCA 1 chr19:36294161-36294241 ( 58) TGATCTCA 1 chr1:15771445-15771525 ( 56) TGACCTCA 1 chr17:30676110-30676190 ( 2) TGACCTCA 1 chr17:8150834-8150914 ( 21) TGACCTCA 1 chr1:155828690-155828770 ( 23) TGACCTCA 1 chr11:66140130-66140210 ( 50) TGACCTCA 1 chr19:860404-860484 ( 10) TGACCTCA 1 chr2:71558466-71558546 ( 59) TGACCTCA 1 chr19:40715538-40715618 ( 11) TGACCTCA 1 chr17:77697534-77697614 ( 5) TGACCTCA 1 chr7:139898775-139898855 ( 46) TGACCTCA 1 chr11:118933586-11893366 ( 38) TGACCTCA 1 chr3:172259127-172259207 ( 10) TGACCTCA 1 chr7:156659475-156659555 ( 50) TGACCTCA 1 chr6:71275747-71275827 ( 48) TGACCTCA 1 chr22:41776364-41776444 ( 23) TGACCTCA 1 chr9:126448488-126448568 ( 6) TTATCCCA 1 chr19:4790851-4790931 ( 61) TAGTCCCA 1 chr8:67838216-67838296 ( 46) TAGTCCCA 1 chr19:49955756-49955836 ( 9) TAGTCCCA 1 chr12:117038891-11703897 ( 50) TTTTCCCA 1 chr20:61426355-61426435 ( 45) TAGTCCCA 1 chr22:27990599-27990679 ( 64) TTTCCCCA 1 chr12:48168136-48168216 ( 13) TAGTCTCA 1 chr6:43707001-43707081 ( 49) TTTTCTCA 1 chr11:74736757-74736837 ( 48) TTTTCTCA 1 chr1:11801709-11801789 ( 42) TTTTCTCA 1 chr12:109163048-10916312 ( 48) TTTTCTCA 1 chr2:191398054-191398134 ( 38) TTTTCTCA 1 chr15:58717068-58717148 ( 55) TTTTCTCA 1 chr1:39298164-39298244 ( 49) TTTTCTCA 1 chr12:121021715-12102179 ( 31) TTTCCTCA 1 chr1:167727219-167727299 ( 50) TGGTCCCA 1 chr12:110134498-11013457 ( 39) TTTCCTCA 1 chr2:26620027-26620107 ( 41) TTTCCTCA 1 chr12:51789814-51789894 ( 39) TTTCCTCA 1 chr12:93735339-93735419 ( 27) TGGCCCCA 1 chr6:2965098-2965178 ( 65) TGGCCTCA 1 chr9:128046757-128046837 ( 61) TGGCCTCA 1 chr2:55857914-55857994 ( 18) TAAGCCCA 1 chr19:1247797-1247877 ( 46) TGGCCTCA 1 chr16:50099585-50099665 ( 27) TATGCCCA 1 chr16:66933051-66933131 ( 38) TGTGCCCA 1 chr1:61755069-61755149 ( 4) TGTGCCCA 1 chr2:9970493-9970573 ( 41) TGTGCCCA 1 chr7:2371581-2371661 ( 3) CAATCCCA 1 chr17:42621677-42621757 ( 12) TGTGCCCA 1 chr1:41822567-41822647 ( 38) TTGCCCCA 1 chr16:68767004-68767084 ( 1) CATTCCCA 1 chr1:26404146-26404226 ( 10) CATCCCCA 1 chr2:12176587-12176667 ( 25) CATCCCCA 1 chr7:106860435-106860515 ( 11) CATCCCCA 1 chr12:92798401-92798481 ( 6) TGTGCTCA 1 chr6:35243792-35243872 ( 57) TTGCCTCA 1 chr12:112278705-11227878 ( 13) CAACCTCA 1 chr8:27182114-27182194 ( 11) CATTCTCA 1 chr2:238872075-238872155 ( 43) CAACCTCA 1 chr6:26988413-26988493 ( 13) CGATCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.02908 E= 1.5e-020 -1317 -134 -1317 182 89 -1317 53 -55 82 -1317 -84 66 -1317 81 -162 94 -1317 202 -1317 -1317 -1317 117 -1317 81 -1317 202 -1317 -1317 192 -1317 -1317 -1317 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 92 E= 1.5e-020 0.000000 0.097826 0.000000 0.902174 0.489130 0.000000 0.336957 0.173913 0.467391 0.000000 0.130435 0.402174 0.000000 0.434783 0.076087 0.489130 0.000000 1.000000 0.000000 0.000000 0.000000 0.554348 0.000000 0.445652 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWYCYCA MEME-4 regular expression -------------------------------------------------------------------------------- T[AG][AT][TC]C[CT]CA -------------------------------------------------------------------------------- Time 15.26 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACTC MEME-5 width = 8 sites = 24 llr = 249 E-value = 3.9e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::aa::: pos.-specific C :8:::a:a probability G :1a::::: matrix T a1::::a: bits 2.1 * * * 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.0 ******** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:2965098-2965178 56 1.60e-05 cactgcagcc tcgaactc ctggcctcaa chr9:128046757-128046837 52 1.60e-05 caggctgttc tcgaactc ctggcctcaa chr20:30913620-30913700 69 1.60e-05 caggctgttc tcgaactc ctga chr12:117020425-11702050 73 1.60e-05 cgggctagtc tcgaactc chr17:8150834-8150914 12 1.60e-05 caggctggtc tcgaactc ctgacctcaa chr18:8913445-8913525 13 1.60e-05 tagggtagtc tcgaactc ttggtttcaa chr1:155828690-155828770 14 1.60e-05 caggctggtc tcgaactc ctgacctcaa chr6:27661455-27661535 40 1.60e-05 caggttggtt tcgaactc ctgaccttgt chr7:129844351-129844431 49 1.60e-05 caggctggtc tcgaactc ctgaccttgt chr2:71558466-71558546 50 1.60e-05 cgggctggtc tcgaactc ctgacctcag chr15:83754961-83755041 7 1.60e-05 ctggtc tcgaactc ctgactttag chr19:40715538-40715618 2 1.60e-05 a tcgaactc ctgacctcaa chr7:139898775-139898855 37 1.60e-05 caggctgttc tcgaactc ctgacctcaa chr17:30333313-30333393 68 1.60e-05 caggatggtc tcgaactc ctgac chr11:118933586-11893366 29 1.60e-05 cacgctggtc tcgaactc ctgacctcag chr2:26284412-26284492 66 1.60e-05 caggctggtc tcgaactc ctacctt chr2:217363188-217363268 9 1.60e-05 ggctggtc tcgaactc ctgacccacc chr6:71275747-71275827 39 1.60e-05 caggctggtc tcgaactc ctgacctcag chr22:41776364-41776444 14 1.60e-05 caggctggtc tcgaactc ctgacctcag chr20:35501978-35502058 41 3.26e-05 aaaccaggat ttgaactc tctgactcca chr9:115322341-115322421 56 3.26e-05 taggctggtc ttgaactc taggcctcaa chr19:860404-860484 1 3.26e-05 . ttgaactc ctgacctcat chr4:110652221-110652301 54 4.77e-05 ttgggaggcc tggaactc ctgaggtcag chr7:156659475-156659555 41 4.77e-05 caggctggtc tggaactc ctgacctcat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:2965098-2965178 1.6e-05 55_[+5]_17 chr9:128046757-128046837 1.6e-05 51_[+5]_21 chr20:30913620-30913700 1.6e-05 68_[+5]_4 chr12:117020425-11702050 1.6e-05 72_[+5] chr17:8150834-8150914 1.6e-05 11_[+5]_61 chr18:8913445-8913525 1.6e-05 12_[+5]_60 chr1:155828690-155828770 1.6e-05 13_[+5]_59 chr6:27661455-27661535 1.6e-05 39_[+5]_33 chr7:129844351-129844431 1.6e-05 48_[+5]_24 chr2:71558466-71558546 1.6e-05 49_[+5]_23 chr15:83754961-83755041 1.6e-05 6_[+5]_66 chr19:40715538-40715618 1.6e-05 1_[+5]_71 chr7:139898775-139898855 1.6e-05 36_[+5]_36 chr17:30333313-30333393 1.6e-05 67_[+5]_5 chr11:118933586-11893366 1.6e-05 28_[+5]_44 chr2:26284412-26284492 1.6e-05 65_[+5]_7 chr2:217363188-217363268 1.6e-05 8_[+5]_64 chr6:71275747-71275827 1.6e-05 38_[+5]_34 chr22:41776364-41776444 1.6e-05 13_[+5]_59 chr20:35501978-35502058 3.3e-05 40_[+5]_32 chr9:115322341-115322421 3.3e-05 55_[+5]_17 chr19:860404-860484 3.3e-05 [+5]_72 chr4:110652221-110652301 4.8e-05 53_[+5]_19 chr7:156659475-156659555 4.8e-05 40_[+5]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACTC width=8 seqs=24 chr6:2965098-2965178 ( 56) TCGAACTC 1 chr9:128046757-128046837 ( 52) TCGAACTC 1 chr20:30913620-30913700 ( 69) TCGAACTC 1 chr12:117020425-11702050 ( 73) TCGAACTC 1 chr17:8150834-8150914 ( 12) TCGAACTC 1 chr18:8913445-8913525 ( 13) TCGAACTC 1 chr1:155828690-155828770 ( 14) TCGAACTC 1 chr6:27661455-27661535 ( 40) TCGAACTC 1 chr7:129844351-129844431 ( 49) TCGAACTC 1 chr2:71558466-71558546 ( 50) TCGAACTC 1 chr15:83754961-83755041 ( 7) TCGAACTC 1 chr19:40715538-40715618 ( 2) TCGAACTC 1 chr7:139898775-139898855 ( 37) TCGAACTC 1 chr17:30333313-30333393 ( 68) TCGAACTC 1 chr11:118933586-11893366 ( 29) TCGAACTC 1 chr2:26284412-26284492 ( 66) TCGAACTC 1 chr2:217363188-217363268 ( 9) TCGAACTC 1 chr6:71275747-71275827 ( 39) TCGAACTC 1 chr22:41776364-41776444 ( 14) TCGAACTC 1 chr20:35501978-35502058 ( 41) TTGAACTC 1 chr9:115322341-115322421 ( 56) TTGAACTC 1 chr19:860404-860484 ( 1) TTGAACTC 1 chr4:110652221-110652301 ( 54) TGGAACTC 1 chr7:156659475-156659555 ( 41) TGGAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 3.9e-016 -1123 -1123 -1123 197 -1123 168 -148 -103 -1123 -1123 210 -1123 192 -1123 -1123 -1123 192 -1123 -1123 -1123 -1123 202 -1123 -1123 -1123 -1123 -1123 197 -1123 202 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.9e-016 0.000000 0.000000 0.000000 1.000000 0.000000 0.791667 0.083333 0.125000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTC MEME-5 regular expression -------------------------------------------------------------------------------- TCGAACTC -------------------------------------------------------------------------------- Time 18.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:45434429-45434509 4.62e-04 17_[+4(1.82e-05)]_10_[+2(5.96e-05)]_\ 37 chr11:44399543-44399623 2.72e-02 80 chr19:14894133-14894213 1.70e-02 10_[+1(1.37e-05)]_62 chr19:2702966-2703046 2.60e-01 80 chr2:238872075-238872155 3.33e-02 5_[+1(5.51e-05)]_67 chr16:50099585-50099665 7.12e-02 80 chr12:112791377-11279145 4.83e-03 [+4(1.82e-05)]_72 chr1:167218108-167218188 9.85e-05 5_[+4(8.93e-05)]_1_[+3(1.78e-05)]_5_\ [+2(3.17e-05)]_45 chr19:4968464-4968544 4.85e-01 80 chr12:109213894-10921397 3.13e-02 80 chr4:110652424-110652504 2.43e-01 80 chr20:61426355-61426435 1.62e-01 80 chr8:27182114-27182194 2.16e-01 80 chr22:27990599-27990679 2.86e-01 80 chr22:41776364-41776444 2.06e-06 2_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 44_[+3(6.81e-05)]_7 chr6:71275747-71275827 9.29e-05 27_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 34 chr7:156659475-156659555 5.21e-05 29_[+1(5.51e-05)]_3_[+5(4.77e-05)]_\ 32 chr19:49955555-49955635 4.02e-01 80 chr11:36214614-36214694 6.81e-01 80 chr16:87809017-87809097 2.55e-02 11_[+1(1.37e-05)]_61 chr2:217363188-217363268 1.79e-03 8_[+5(1.60e-05)]_64 chr3:172259127-172259207 1.57e-03 80 chr19:50178924-50179004 2.04e-02 33_[+3(6.81e-05)]_39 chr6:6968648-6968728 4.13e-01 80 chr12:112278705-11227878 8.15e-02 80 chr8:67574142-67574222 1.65e-01 80 chr17:73106870-73106950 3.14e-02 57_[+4(1.82e-05)]_15 chr16:58483336-58483416 8.12e-02 80 chr12:122308223-12230830 6.16e-04 6_[+4(8.93e-05)]_54_[+4(1.82e-05)]_\ 4 chr3:13654998-13655078 2.09e-01 80 chr2:26284412-26284492 1.04e-04 54_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 7 chr12:104998718-10499879 2.42e-02 17_[+4(8.93e-05)]_55 chr9:126448488-126448568 3.27e-03 14_[+3(1.78e-05)]_58 chr20:33049226-33049306 8.30e-03 50_[+2(5.96e-05)]_22 chr11:118933586-11893366 5.51e-04 28_[+5(1.60e-05)]_44 chr7:100426189-100426269 1.15e-01 80 chr20:48294426-48294506 5.99e-02 80 chr16:8233477-8233557 1.49e-01 80 chr17:30333313-30333393 7.73e-03 67_[+5(1.60e-05)]_5 chr7:139898775-139898855 1.72e-05 25_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 36 chr1:39298164-39298244 1.31e-01 80 chr12:98896504-98896584 3.54e-02 80 chr9:97060760-97060840 5.96e-02 4_[+1(1.37e-05)]_48_[+1(1.37e-05)]_\ 12 chr19:49382421-49382501 3.52e-03 80 chr19:51092149-51092229 6.12e-01 80 chr15:58717068-58717148 7.31e-02 80 chr12:104962770-10496285 5.39e-01 80 chr10:104749282-10474936 4.32e-04 20_[+4(1.82e-05)]_10_[+2(5.96e-05)]_\ 34 chr9:95821518-95821598 4.54e-04 59_[+3(1.78e-05)]_5_[+2(3.17e-05)] chr19:39695888-39695968 1.22e-02 58_[+2(3.17e-05)]_14 chr11:63350525-63350605 2.14e-03 44_[+1(1.37e-05)]_28 chr17:77697534-77697614 6.86e-03 48_[+3(6.81e-05)]_24 chr19:36294161-36294241 2.42e-03 36_[+1(5.51e-05)]_36 chr12:110703827-11070390 6.87e-03 29_[+3(6.81e-05)]_43 chr17:42621677-42621757 1.98e-01 80 chr12:110536566-11053664 9.09e-03 19_[+4(1.82e-05)]_53 chr3:156393395-156393475 1.41e-01 80 chr10:104749491-10474957 1.85e-03 35_[+1(1.37e-05)]_37 chr6:35362245-35362325 3.84e-02 45_[+4(8.93e-05)]_27 chr4:110652221-110652301 4.79e-04 30_[+4(1.82e-05)]_15_[+5(4.77e-05)]_\ 19 chr19:12992843-12992923 1.42e-02 9_[+1(2.81e-05)]_63 chr1:46624850-46624930 7.53e-02 80 chr1:31340570-31340650 1.60e-03 31_[+2(3.17e-05)]_41 chr1:51177410-51177490 4.10e-03 34_[+3(1.78e-05)]_38 chr2:238872288-238872368 3.69e-03 3_[+3(6.81e-05)]_69 chr12:108522484-10852256 8.03e-04 54_[+3(1.78e-05)]_18 chr19:50861469-50861549 7.71e-04 40_[+3(6.81e-05)]_32 chr3:77239011-77239091 9.39e-04 [+3(1.78e-05)]_5_[+2(3.17e-05)]_59 chr16:4350143-4350223 2.49e-02 24_[+1(1.37e-05)]_48 chr7:12605661-12605741 3.18e-03 6_[+4(8.93e-05)]_14_[+2(3.17e-05)]_\ 44 chr8:41410801-41410881 6.57e-02 20_[+3(6.81e-05)]_52 chr14:81770761-81770841 2.93e-02 80 chr5:39186979-39187059 1.16e-03 9_[+4(8.93e-05)]_13_[+2(3.17e-05)]_\ 42 chr20:45829092-45829172 2.88e-03 60_[+1(5.51e-05)]_12 chr19:921704-921784 9.03e-03 80 chr1:156226968-156227048 8.57e-02 80 chr19:40715538-40715618 2.08e-05 1_[+5(1.60e-05)]_71 chr16:22207668-22207748 5.78e-03 4_[+3(1.78e-05)]_68 chr7:98670799-98670879 1.53e-02 1_[+1(1.37e-05)]_71 chr19:1247797-1247877 7.77e-02 80 chr2:55857914-55857994 2.24e-02 35_[+2(5.96e-05)]_37 chr1:29370713-29370793 8.35e-01 80 chr1:32234597-32234677 2.71e-01 80 chr4:55270320-55270400 4.00e-01 80 chr15:83754961-83755041 7.13e-03 6_[+5(1.60e-05)]_66 chr12:112278910-11227899 7.82e-01 80 chr2:71558466-71558546 3.65e-04 49_[+5(1.60e-05)]_23 chr7:129844351-129844431 7.93e-04 37_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 24 chr12:110704027-11070410 2.04e-01 80 chr6:17701415-17701495 1.17e-02 8_[+1(1.37e-05)]_64 chr1:31542358-31542438 2.96e-02 14_[+3(6.81e-05)]_58 chr6:139767176-139767256 3.20e-02 80 chr6:27661455-27661535 4.18e-03 39_[+5(1.60e-05)]_33 chr2:191398054-191398134 9.79e-02 80 chr19:4470994-4471074 4.30e-01 80 chr12:109163048-10916312 7.75e-02 80 chr17:42768192-42768272 1.99e-03 45_[+1(1.37e-05)]_27 chr20:17906681-17906761 4.11e-01 80 chr19:13068418-13068498 3.94e-02 3_[+1(5.51e-05)]_69 chr19:860404-860484 1.28e-04 [+5(3.26e-05)]_64_[+3(6.81e-05)] chr5:149125272-149125352 7.77e-04 5_[+4(5.34e-05)]_1_[+3(1.78e-05)]_\ 58 chr12:51789814-51789894 1.04e-01 80 chr2:113031859-113031939 3.25e-01 80 chr9:33077179-33077259 6.40e-01 80 chr12:109248861-10924894 7.50e-01 80 chr2:70476609-70476689 8.06e-02 80 chr7:135460828-135460908 1.10e-03 54_[+4(1.82e-05)]_18 chr2:191299883-191299963 2.20e-01 80 chr17:42767952-42768032 4.69e-03 61_[+4(1.82e-05)]_11 chr1:11801709-11801789 1.14e-02 80 chr2:26620027-26620107 1.75e-02 80 chr1:27817531-27817611 4.95e-05 29_[+4(1.82e-05)]_10_[+2(5.96e-05)]_\ 25 chr12:124908374-12490845 1.01e-02 31_[+3(1.78e-05)]_41 chr11:118781724-11878180 2.63e-03 28_[+2(3.17e-05)]_44 chr6:7135348-7135428 5.54e-01 80 chr17:39686899-39686979 4.59e-03 38_[+3(1.78e-05)]_34 chr9:19380634-19380714 6.39e-02 10_[+1(1.37e-05)]_62 chr11:59332741-59332821 3.83e-03 64_[+4(1.82e-05)]_8 chr8:86971002-86971082 1.50e-04 24_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 35 chr2:68363080-68363160 3.85e-04 9_[+4(1.82e-05)]_10_[+2(5.96e-05)]_\ 34_[+2(8.74e-05)]_3 chr18:3283363-3283443 4.46e-01 80 chr6:28318222-28318302 1.10e-01 80 chr12:117557880-11755796 2.44e-02 80 chr17:74721242-74721322 7.10e-03 50_[+1(1.37e-05)]_22 chr3:128176334-128176414 3.44e-02 80 chr16:87809216-87809296 2.62e-01 80 chr1:28445398-28445478 1.21e-02 7_[+1(1.37e-05)]_65 chr12:104970114-10497019 4.02e-03 43_[+2(3.17e-05)]_29 chr1:120279415-120279495 5.84e-03 38_[+2(3.17e-05)]_34 chr17:58117533-58117613 1.94e-03 39_[+4(8.93e-05)]_1_[+3(1.78e-05)]_\ 24 chr16:75019536-75019616 8.71e-04 63_[+1(1.37e-05)]_9 chr15:60709578-60709658 2.35e-01 80 chr3:15352811-15352891 1.62e-03 4_[+4(1.82e-05)]_48_[+1(1.37e-05)]_\ 12 chr3:183254294-183254374 4.88e-01 80 chr12:92798401-92798481 2.63e-01 80 chr5:134792659-134792739 3.72e-01 80 chr16:187678-187758 1.16e-01 80 chr12:54753725-54753805 1.56e-01 80 chr3:197466883-197466963 1.58e-01 80 chr12:110493289-11049336 4.51e-02 80 chr2:12213574-12213654 1.23e-01 80 chr1:39280996-39281076 3.89e-02 80 chr6:158450880-158450960 5.24e-04 1_[+3(3.34e-05)]_5_[+2(3.17e-05)]_\ 58 chr1:156308970-156309050 1.04e-03 52_[+1(1.37e-05)]_20 chr11:66140130-66140210 1.46e-04 12_[+5(1.60e-05)]_9_[+1(5.51e-05)]_\ 3_[+5(1.60e-05)]_32 chr19:11671012-11671092 1.04e-01 80 chr11:117198127-11719820 2.62e-01 80 chr12:110134498-11013457 7.41e-03 80 chr16:68767004-68767084 7.49e-03 9_[+3(1.78e-05)]_63 chr7:2371581-2371661 5.84e-01 80 chr2:43417142-43417222 5.57e-01 80 chr12:117038891-11703897 1.41e-01 80 chr7:106860435-106860515 1.33e-03 19_[+3(1.78e-05)]_53 chr1:155828690-155828770 2.06e-06 2_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 45_[+3(6.81e-05)]_6 chr11:85841125-85841205 3.61e-03 8_[+3(3.34e-05)]_5_[+2(3.17e-05)]_\ 51 chr15:55611904-55611984 1.23e-01 80 chr6:43902490-43902570 9.27e-04 61_[+4(8.93e-05)]_1_[+3(1.78e-05)]_\ 2 chr18:8913445-8913525 6.99e-04 12_[+5(1.60e-05)]_60 chr17:8150834-8150914 5.29e-05 11_[+5(1.60e-05)]_61 chr19:49955756-49955836 9.69e-03 [+1(6.82e-05)]_72 chr1:167727219-167727299 1.64e-02 67_[+2(5.96e-05)]_5 chr20:48294627-48294707 5.12e-01 80 chr9:115322341-115322421 1.69e-02 55_[+5(3.26e-05)]_17 chr2:30457462-30457542 4.02e-02 80 chr1:35736131-35736211 4.55e-02 30_[+1(1.37e-05)]_42 chr20:45317281-45317361 5.59e-04 7_[+3(3.34e-05)]_11_[+2(5.96e-05)]_\ 46 chr5:96037420-96037500 8.96e-03 56_[+1(1.37e-05)]_16 chr6:27242925-27243005 7.51e-01 80 chr10:73974903-73974983 1.99e-03 [+4(1.82e-05)]_72 chr7:2664580-2664660 5.83e-03 80 chr12:122370183-12237026 1.08e-04 27_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 32 chr2:9970493-9970573 5.46e-04 22_[+3(6.81e-05)]_50 chr3:151961834-151961914 1.58e-02 30_[+3(6.81e-05)]_42 chr1:153644352-153644432 3.30e-01 80 chr4:100482491-100482571 8.66e-01 80 chr7:73937045-73937125 3.16e-02 80 chr6:158403813-158403893 2.65e-02 11_[+2(3.17e-05)]_61 chr2:32390258-32390338 3.94e-03 57_[+1(5.51e-05)]_15 chr17:61510036-61510116 1.90e-01 8_[+2(5.96e-05)]_64 chr6:35243792-35243872 1.97e-02 80 chr12:117020425-11702050 8.89e-05 39_[+2(8.74e-05)]_25_[+5(1.60e-05)] chr19:45931684-45931764 4.30e-01 80 chr8:67838216-67838296 2.51e-03 62_[+2(5.96e-05)]_10 chr1:27340094-27340174 2.95e-02 16_[+1(1.37e-05)]_56 chr1:22378756-22378836 6.88e-03 80 chr20:52258926-52259006 2.27e-01 80 chr11:36149268-36149348 9.59e-01 80 chr2:236930416-236930496 2.10e-03 29_[+4(1.82e-05)]_10_[+2(5.96e-05)]_\ 25 chr11:36313919-36313999 4.84e-02 80 chr11:74736757-74736837 5.89e-02 80 chr3:171149472-171149552 3.38e-05 32_[+4(5.34e-05)]_1_[+3(1.78e-05)]_\ 5_[+2(3.17e-05)]_18 chr11:59333278-59333358 1.31e-02 31_[+3(6.81e-05)]_41 chr11:10772087-10772167 1.26e-01 80 chr2:25022115-25022195 6.95e-02 80 chr12:122181191-12218127 4.22e-04 8_[+4(1.82e-05)]_49_[+1(1.37e-05)]_\ 7 chr17:76026350-76026430 2.91e-01 80 chr1:113436223-113436303 8.75e-01 80 chr3:47785059-47785139 9.83e-03 45_[+1(1.37e-05)]_27 chr12:122181404-12218148 4.87e-03 27_[+1(1.37e-05)]_45 chr16:11659703-11659783 9.38e-01 80 chr20:30913620-30913700 5.96e-05 57_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 4 chr12:93735339-93735419 1.33e-03 48_[+2(3.17e-05)]_24 chr6:28676741-28676821 8.88e-05 10_[+4(1.82e-05)]_49_[+1(1.37e-05)]_\ 5 chr2:12176587-12176667 1.26e-04 33_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 26 chr12:116725953-11672603 3.04e-03 25_[+3(1.78e-05)]_47 chr1:61755069-61755149 2.57e-04 12_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 47 chr7:100426584-100426664 6.35e-03 66_[+1(5.51e-05)]_6 chr10:79700158-79700238 5.00e-01 80 chr9:95821232-95821312 5.26e-01 80 chr9:130462137-130462217 1.15e-01 80 chr1:41822567-41822647 2.35e-02 9_[+2(3.17e-05)]_63 chr12:121021715-12102179 4.08e-01 80 chr6:27640847-27640927 6.40e-03 80 chr4:81049323-81049403 9.10e-01 80 chr9:33076977-33077057 1.02e-01 80 chr11:36214815-36214895 3.59e-01 80 chr1:31504235-31504315 2.45e-02 47_[+4(5.34e-05)]_25 chr16:16215167-16215247 1.88e-05 53_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 6 chr8:56947949-56948029 4.09e-01 80 chr12:124990714-12499079 3.17e-03 43_[+2(3.17e-05)]_29 chr19:921909-921989 4.00e-01 80 chr1:109323668-109323748 1.18e-02 50_[+3(1.78e-05)]_22 chr17:25794103-25794183 2.54e-04 8_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 51 chr19:4790851-4790931 7.37e-02 80 chr19:14543464-14543544 9.34e-01 80 chr19:15955154-15955234 8.00e-02 14_[+1(2.81e-05)]_58 chr1:12236517-12236597 7.35e-04 41_[+2(3.17e-05)]_31 chr1:26404146-26404226 2.82e-04 18_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 41 chr17:30676110-30676190 8.16e-03 80 chr6:26988413-26988493 8.46e-02 80 chr6:43707001-43707081 1.04e-01 80 chr9:128046757-128046837 2.00e-06 40_[+1(5.51e-05)]_3_[+5(1.60e-05)]_\ 21 chr12:48168136-48168216 1.15e-04 47_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 12 chr1:161581736-161581816 3.43e-02 80 chr1:15771445-15771525 1.84e-01 80 chr3:57679126-57679206 6.35e-02 49_[+1(1.37e-05)]_23 chr11:96025627-96025707 3.26e-04 4_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 55 chr9:135820771-135820851 1.22e-01 80 chr2:122315071-122315151 3.95e-02 80 chr10:29024603-29024683 9.27e-01 80 chr1:15775515-15775595 3.17e-04 30_[+3(1.78e-05)]_5_[+2(3.17e-05)]_\ 29 chr6:2965098-2965178 2.56e-04 13_[+1(5.51e-05)]_34_[+5(1.60e-05)]_\ 17 chr22:26880233-26880313 2.24e-01 80 chr20:35501978-35502058 3.21e-02 40_[+5(3.26e-05)]_32 chr7:77535501-77535581 4.93e-05 10_[+1(5.51e-05)]_54_[+3(6.81e-05)] chr16:66933051-66933131 1.71e-03 11_[+2(3.17e-05)]_61 chr12:110536767-11053684 1.34e-03 42_[+1(1.37e-05)]_30 chr16:81653787-81653867 3.50e-01 80 chr6:16056837-16056917 5.24e-02 80 chr19:46173217-46173297 1.38e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************