# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZSCAN29/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZSCAN29.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZSCAN29.fasta (Sat Feb 12 18:00:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.216 C 0.287 G 0.289 T 0.207


MOTIF GTCTACRC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTCTACRC   GYGTAGAC         27          1   5.4e-008   1.5e-004
#         GTCTACAC   GTGTAGAC         18          1   2.9e-005   8.2e-002
#         GTCTACGC   GCGTAGAC          9          0   1.8e-003   5.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.5e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.666667 0.000000 0.333333 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGGATTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGATTC   GAATCCGG          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTATGCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTATGCAG   CTGCATAG          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAGGGAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGAAC   GTTCCCTT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGACGCTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGACGCTG   CAGCGTCT          3          0   1.2e-001   3.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds