# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF592/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF592.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF592.fasta (Sat Feb 12 18:00:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.265 C 0.237 G 0.242 T 0.256


MOTIF ATGGAGTY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGAGTY   RACTCCAT         56          0   4.3e-019   8.6e-016
#         ATGGAGTC   GACTCCAT         33          0   3.8e-011   7.5e-008
#         ATGGAGTT   AACTCCAT         23          0   7.0e-008   1.4e-004

letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 8.6e-016
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.589286 0.000000 0.410714


MOTIF GAACCAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAACCAGA   TCTGGTTC         17          0   5.8e-006   1.1e-002
#         GAACCAGA   TCTGGTTC         17          0   5.8e-006   1.1e-002

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.1e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTTGAATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTGAATA   TATTCAAG         16          0   1.2e-005   2.2e-002
#         CTTGAATA   TATTCAAG         16          0   1.2e-005   2.2e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.2e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTCTGACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGACA   TGTCAGAG         10          0   8.9e-004   1.6e+000
#         CTCTGACA   TGTCAGAG         10          0   8.9e-004   1.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.6e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGCCAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCCAT   ATGGCTGT          6          0   1.5e-002   2.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.54 seconds