# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF512/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF512.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF512.fasta (Sat Feb 12 18:00:51 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.321 C 0.175 G 0.218 T 0.286


MOTIF ARGAARGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARGAARGA   TCYTTCYT        150         51   5.1e-020   3.8e-017
#         AGGAAGGA   TCCTTCCT         41          2   2.1e-011   1.6e-008
#         AAGAAAGA   TCTTTCTT         99         34   2.4e-011   1.8e-008
#         AAGAAGGA   TCCTTCTT         22          8   6.6e-003   4.9e+000
#         AGGAAAGA   TCTTTCCT         26         11   7.9e-003   5.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 196 E= 3.8e-017
1.000000 0.000000 0.000000 0.000000
0.673469 0.000000 0.326531 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.724490 0.000000 0.275510 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGAAGG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGAAGG   CCTTCCTT         11          1   2.9e-003   1.9e+000
#         AAGGAAGG   CCTTCCTT         11          1   2.9e-003   1.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.9e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GGGAGGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGAGGGA   TCCCTCCC         11          2   1.0e-002   6.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.8e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGAGGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGAGGG   CCCTCCTT          7          1   3.4e-002   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAAAGAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAGAAA   TTTCTTTC         16          8   7.1e-002   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.5e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.57 seconds