# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF507/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF507.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF507.fasta (Sat Feb 12 18:00:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.333 C 0.142 G 0.153 T 0.372


MOTIF ATRTAAAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATRTAAAT   ATTTAYAT         61          2   4.3e-018   7.3e-015
#         ATGTAAAT   ATTTACAT         52          2   5.3e-015   8.9e-012
#         ATATAAAT   ATTTATAT          9          0   1.8e-003   3.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 7.3e-015
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.147541 0.000000 0.852459 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATTTAGHC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTAGHC   GDCTAAAT         30          0   3.7e-010   5.9e-007
#         ATTTAGCC   GGCTAAAT         14          0   5.1e-005   8.1e-002
#         ATTTAGAC   GTCTAAAT          8          0   3.7e-003   5.9e+000
#         ATTTAGTC   GACTAAAT          8          0   3.7e-003   5.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.9e-007
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.266667 0.466667 0.000000 0.266667
0.000000 1.000000 0.000000 0.000000


MOTIF GYCTTTTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GYCTTTTA   TAAAAGRC         22          0   1.5e-007   2.3e-004
#         GTCTTTTA   TAAAAGAC         12          0   2.1e-004   3.3e-001
#         GCCTTTTA   TAAAAGGC         10          0   8.9e-004   1.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.3e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.454545 0.000000 0.545455
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACATTTAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATTTAA   TTAAATGT         13          0   1.0e-004   1.5e-001
#         ACATTTAA   TTAAATGT         13          0   1.0e-004   1.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.5e-001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACCTTAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCTTAA   TTAAGGTT         12          1   1.5e-003   2.2e+000
#         AACCTTAA   TTAAGGTT         12          1   1.5e-003   2.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.84 seconds