# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF395/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF395.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF395.fasta (Sat Feb 12 18:00:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.235 C 0.278 G 0.268 T 0.218


MOTIF AGATGGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATGGAG   CTCCATCT         20          0   6.4e-007   1.5e-003
#         AGATGGAG   CTCCATCT         20          0   6.4e-007   1.5e-003

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.5e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAACCAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAACCAGA   TCTGGTTC         23          1   9.2e-007   2.1e-003
#         GAACCAGA   TCTGGTTC         23          1   9.2e-007   2.1e-003

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.1e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCCTCTGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCTCTGA   TCAGAGGC         12          0   2.1e-004   4.9e-001
#         GCCTCTGA   TCAGAGGC         12          0   2.1e-004   4.9e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.9e-001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTATTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTATTCA   TGAATAGG          9          0   1.8e-003   4.1e+000
#         CCTATTCA   TGAATAGG          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.1e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGAACAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAACAT   ATGTTCCT          6          0   1.5e-002   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds