# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF316/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF316.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF316.fasta (Sat Feb 12 18:00:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.236 C 0.265 G 0.266 T 0.233


MOTIF TGARGGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGARGGCA   TGCCYTCA         67          1   1.6e-021   3.5e-018
#         TGAGGGCA   TGCCCTCA         54          0   2.2e-018   4.9e-015
#         TGAAGGCA   TGCCTTCA         13          1   8.0e-004   1.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 3.5e-018
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.194030 0.000000 0.805970 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGCTCCM DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCTCCM   KGGAGCTT         31          1   3.0e-009   6.2e-006
#         AAGCTCCA   TGGAGCTT         19          0   1.3e-006   2.7e-003
#         AAGCTCCC   GGGAGCTT         12          1   1.5e-003   3.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 6.2e-006
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.612903 0.387097 0.000000 0.000000


MOTIF AGGRCAGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGRCAGG   CCTGYCCT         17          1   5.6e-005   1.1e-001
#         AGGGCAGG   CCTGCCCT         10          1   5.4e-003   1.1e+001
#         AGGACAGG   CCTGTCCT          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.1e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.411765 0.000000 0.588235 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GGCAGGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCAGGGA   TCCCTGCC          5          0   3.1e-002   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.8e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGCCCCT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCCCCT   AGGGGCTT          4          0   6.2e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds