# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF263/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF263.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF263.fasta (Sat Feb 12 18:00:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:06 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.174 C 0.324 G 0.334 T 0.169


MOTIF GGAGCACB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGCACB   VGTGCTCC         35          0   8.1e-012   1.9e-008
#         GGAGCACT   AGTGCTCC         16          0   1.2e-005   2.8e-002
#         GGAGCACC   GGTGCTCC         12          0   2.1e-004   5.0e-001
#         GGAGCACG   CGTGCTCC          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.9e-008
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.333333 0.194444 0.472222


MOTIF GGAGGAGS DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGGAGS   SCTCCTCC         44         10   4.7e-007   1.0e-003
#         GGAGGAGG   CCTCCTCC         30          8   1.4e-004   3.1e-001
#         GGAGGAGC   GCTCCTCC         18          2   1.6e-004   3.4e-001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.0e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.377778 0.622222 0.000000


MOTIF GGGAGGAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGAGGAC   GTCCTCCC          6          0   1.5e-002   3.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.0e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCACAGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCACAGC   GCTGTGCT          4          0   6.2e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGGGAGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGAGGA   TCCTCCCG          4          0   6.2e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.44 seconds