# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF184/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF184.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF184.fasta (Sat Feb 12 18:00:46 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.300 C 0.207 G 0.197 T 0.297


MOTIF AAGTGYTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTGYTG   CARCACTT         54          2   1.1e-015   2.1e-012
#         AAGTGTTG   CAACACTT         44          2   2.3e-012   4.4e-009
#         AAGTGCTG   CAGCACTT         10          0   8.9e-004   1.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 2.1e-012
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.185185 0.000000 0.814815
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAAGWC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGWC   GWCTTTTT         17          0   5.8e-006   1.0e-002
#         AAAAAGAC   GTCTTTTT          9          0   1.8e-003   3.3e+000
#         AAAAAGTC   GACTTTTT          8          0   3.7e-003   6.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.0e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.529412 0.000000 0.000000 0.470588
0.000000 1.000000 0.000000 0.000000


MOTIF AAACAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAACA   TGTTGTTT         14          0   5.1e-005   8.9e-002
#         AAACAACA   TGTTGTTT         14          0   5.1e-005   8.9e-002

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.9e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GATGTGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GATGTGGA   TCCACATC          9          0   1.8e-003   3.2e+000
#         GATGTGGA   TCCACATC          9          0   1.8e-003   3.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.2e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACCATACC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCATACC   GGTATGGT          8          0   3.7e-003   6.3e+000
#         ACCATACC   GGTATGGT          8          0   3.7e-003   6.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.3e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds