# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZNF175/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF175.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZNF175.fasta (Sat Feb 12 18:00:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:07 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.261 C 0.239 G 0.241 T 0.259


MOTIF AACCAGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT         21          0   3.1e-007   7.5e-004
#         AACCAGAG   CTCTGGTT         21          0   3.1e-007   7.5e-004

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.5e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGGAGTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGAGTC   GACTCCAT         21          0   3.1e-007   7.4e-004
#         ATGGAGTC   GACTCCAT         21          0   3.1e-007   7.4e-004

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.4e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCTGACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGACA   TGTCAGAG         15          0   2.5e-005   5.8e-002
#         CTCTGACA   TGTCAGAG         15          0   2.5e-005   5.8e-002

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.8e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAAGATGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAGATGG   CCATCTTG          9          0   1.8e-003   4.1e+000
#         CAAGATGG   CCATCTTG          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.1e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GTTCAAAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTCAAAC   GTTTGAAC          9          0   1.8e-003   4.1e+000
#         GTTCAAAC   GTTTGAAC          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.1e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds