# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZKSCAN8/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZKSCAN8.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZKSCAN8.fasta (Sat Feb 12 18:00:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.259 C 0.250 G 0.231 T 0.259


MOTIF CTGTATRC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTATRC   GYATACAG         26          1   1.1e-007   2.8e-004
#         CTGTATAC   GTATACAG         17          1   5.6e-005   1.4e-001
#         CTGTATGC   GCATACAG          9          0   1.8e-003   4.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.8e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.653846 0.000000 0.346154 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TCAATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCAATAAA   TTTATTGA         16          0   1.2e-005   2.9e-002
#         TCAATAAA   TTTATTGA         16          0   1.2e-005   2.9e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.9e-002
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGTGCTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTGCTC   GAGCACCT          7          0   7.5e-003   1.8e+001
#         AGGTGCTC   GAGCACCT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTTATTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTATTA   TAATAAAT          5          0   3.1e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGCGCTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCGCTCA   TGAGCGCC          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.99 seconds