# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZFX/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZFX.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZFX.fasta (Sat Feb 12 18:00:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.112 C 0.390 G 0.374 T 0.124


MOTIF CCSAGGCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCSAGGCC   GGCCTSGG         15          0   2.5e-005   5.7e-002
#         CCCAGGCC   GGCCTGGG          8          0   3.7e-003   8.5e+000
#         CCGAGGCC   GGCCTCGG          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.7e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.533333 0.466667 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCGCGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGCGGC   GCCGCGGG          6          0   1.5e-002   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGGCCTAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGCCTAG   CTAGGCCG          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGGGCCGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGCCGC   GCGGCCCG          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGGCCCCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCCCCG   CGGGGCCT          6          1   6.1e-002   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.05 seconds