# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZBTB40/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZBTB40.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZBTB40.fasta (Sat Feb 12 18:00:41 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:07 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.354 C 0.143 G 0.140 T 0.362


MOTIF TTTATTGR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTTATTGR   YCAATAAA         94          0   9.8e-034   1.1e-030
#         TTTATTGG   CCAATAAA         65          0   2.2e-022   2.5e-019
#         TTTATTGA   TCAATAAA         32          0   8.1e-011   8.9e-008

letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 1.1e-030
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.329897 0.000000 0.670103 0.000000


MOTIF AAATAAAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAAAG   CTTTATTT         79          2   1.2e-024   1.2e-021
#         AAATAAAG   CTTTATTT         79          2   1.2e-024   1.2e-021

letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 1.2e-021
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACACAGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACACAGC   GCTGTGTT         27          0   3.5e-009   3.4e-006
#         AACACAGC   GCTGTGTT         27          0   3.5e-009   3.4e-006

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.4e-006
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAACAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACAG   CTGTTTTT         19          2   8.3e-005   7.7e-002
#         AAAAACAG   CTGTTTTT         19          2   8.3e-005   7.7e-002

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 7.7e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATAAAGT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAAAGT   ACTTTATT         14          2   1.8e-003   1.6e+000
#         AATAAAGT   ACTTTATT         14          2   1.8e-003   1.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.6e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds