# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ZBTB33/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZBTB33.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ZBTB33.fasta (Sat Feb 12 18:00:40 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:07 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.189 C 0.314 G 0.313 T 0.184


MOTIF CTGGGAAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGGGAAG   CTTCCCAG         10          0   8.9e-004   2.1e+000
#         CTGGGAAG   CTTCCCAG         10          0   8.9e-004   2.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAGGCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGGCTGA   TCAGCCTC         10          0   8.9e-004   2.1e+000
#         GAGGCTGA   TCAGCCTC         10          0   8.9e-004   2.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGGCGT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGGCGT   ACGCCTGT          8          0   3.7e-003   8.5e+000
#         ACAGGCGT   ACGCCTGT          8          0   3.7e-003   8.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.5e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AGGAGAAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAGAAT   ATTCTCCT          8          0   3.7e-003   8.4e+000
#         AGGAGAAT   ATTCTCCT          8          0   3.7e-003   8.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.4e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CGCCACCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCACCA   TGGTGGCG          8          0   3.7e-003   8.4e+000
#         CGCCACCA   TGGTGGCG          8          0   3.7e-003   8.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.4e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds