# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_YY1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/YY1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/YY1.fasta (Sat Feb 12 18:00:39 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.178 C 0.328 G 0.310 T 0.184


MOTIF AAVATGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAVATGGC   GCCATBTT         78          0   2.6e-027   6.2e-024
#         AAGATGGC   GCCATCTT         50          0   5.8e-017   1.4e-013
#         AACATGGC   GCCATGTT         19          0   1.3e-006   3.2e-003
#         AAAATGGC   GCCATTTT          9          0   1.8e-003   4.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 6.2e-024
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.115385 0.243590 0.641026 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGGCGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGCGGC   GCCGCCAT         12          1   1.5e-003   3.1e+000
#         ATGGCGGC   GCCGCCAT         12          1   1.5e-003   3.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGCCGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCGCC   GGCGGCGG          7          0   7.5e-003   1.5e+001
#         CCGCCGCC   GGCGGCGG          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTGCCCAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGCCCAC   GTGGGCAG          4          0   6.2e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCAGCGGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAGCGGC   GCCGCTGC          4          0   6.2e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.77 seconds