# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_YBX1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/YBX1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/YBX1.fasta (Sat Feb 12 18:00:39 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.272 C 0.232 G 0.230 T 0.266


MOTIF TCCATCCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCATCCA   TGGATGGA         14          0   5.1e-005   1.1e-001
#         TCCATCCA   TGGATGGA         14          0   5.1e-005   1.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.1e-001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTTCCTTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCTTC   GAAGGAAG         16          3   1.9e-003   3.9e+000
#         CTTCCTTC   GAAGGAAG         16          3   1.9e-003   3.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.9e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACATACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACATACA   TGTATGTG          6          0   1.5e-002   3.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAGGGAGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGGGAGA   TCTCCCTC          6          0   1.5e-002   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.1e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGAAAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGAAAG   CTTTCTCT          8          1   1.9e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.52 seconds