# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_XRCC3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/XRCC3.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/XRCC3.fasta (Sat Feb 12 18:00:39 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.297 C 0.213 G 0.210 T 0.280


MOTIF CAGAAAGK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGAAAGK   MCTTTCTG         23          0   7.0e-008   1.7e-004
#         CAGAAAGT   ACTTTCTG         14          0   5.1e-005   1.2e-001
#         CAGAAAGG   CCTTTCTG         13          0   1.0e-004   2.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.7e-004
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.464286 0.535714


MOTIF CTTGCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTGCTGA   TCAGCAAG         11          0   4.4e-004   1.0e+000
#         CTTGCTGA   TCAGCAAG         11          0   4.4e-004   1.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.0e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAGAGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGAGAA   TTCTCTCC          8          0   3.7e-003   8.7e+000
#         GGAGAGAA   TTCTCTCC          8          0   3.7e-003   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.7e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCACATTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACATTC   GAATGTGG          7          0   7.5e-003   1.7e+001
#         CCACATTC   GAATGTGG          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACCCTTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACCCTTC   GAAGGGTG          6          0   1.5e-002   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.5e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds