# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_USF2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/USF2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/USF2.fasta (Sat Feb 12 18:00:38 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.211 C 0.290 G 0.303 T 0.196


MOTIF TCACRTGR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCACRTGR   YCAYGTGA         45          0   3.2e-015   7.9e-012
#         TCACGTGA   TCACGTGA         17          0   5.8e-006   1.4e-002
#         TCACGTGG   CCACGTGA         13          0   1.0e-004   2.6e-001
#         TCACATGA   TCATGTGA          8          0   3.7e-003   9.0e+000
#         TCACATGG   CCATGTGA          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.9e-012
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.333333 0.000000 0.666667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.555556 0.000000 0.444444 0.000000


MOTIF CCAATCAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATCAC   GTGATTGG         12          0   2.1e-004   4.8e-001
#         CCAATCAC   GTGATTGG         12          0   2.1e-004   4.8e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.8e-001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTGGCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGGCCA   TGGCCAAT         14          1   4.2e-004   9.1e-001
#         ATTGGCCA   TGGCCAAT         14          1   4.2e-004   9.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 9.1e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCACGTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCACGTGA   TCACGTGC         10          0   8.9e-004   1.9e+000
#         GCACGTGA   TCACGTGC         10          0   8.9e-004   1.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.9e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGTGACC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTGACC   GGTCACGT          6          0   1.5e-002   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.85 seconds